RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13420
(169 letters)
>gnl|CDD|146171 pfam03392, OS-D, Insect pheromone-binding family, A10/OS-D.
Length = 95
Score = 170 bits (434), Expect = 4e-56
Identities = 65/95 (68%), Positives = 77/95 (81%)
Query: 68 YTTKYDNVDLDEIIANDRLFTNYYKCLMDTGACSPDGAELKKVLPDAIATECGGCSDKQK 127
YTTKYDN+DLDEI+ NDRL NY KCL+D G C+P+G ELKKVLPDA+ T+C C++KQK
Sbjct: 1 YTTKYDNIDLDEILNNDRLLKNYVKCLLDKGPCTPEGKELKKVLPDALETDCAKCTEKQK 60
Query: 128 EGAKKIFKFLIEKKPEEWKALEGKYDPSGSYKAKY 162
EGA+K+ KFLIE KPEEWK L KYDP G Y+ KY
Sbjct: 61 EGARKVIKFLIENKPEEWKELVAKYDPEGEYRKKY 95
Score = 61.4 bits (150), Expect = 4e-13
Identities = 20/32 (62%), Positives = 25/32 (78%)
Query: 5 VDEIIANDRLFSNYYKCLMDTGACSPDGAELK 36
+DEI+ NDRL NY KCL+D G C+P+G ELK
Sbjct: 10 LDEILNNDRLLKNYVKCLLDKGPCTPEGKELK 41
>gnl|CDD|200444 cd11288, gelsolin_S5_like, Gelsolin sub-domain 5-like domain found
in gelsolin, severin, villin, and related proteins.
Gelsolin repeats occur in gelsolin, severin, villin,
advillin, villidin, supervillin, flightless, quail,
fragmin, and other proteins, usually in several copies.
They co-occur with villin headpiece domains,
leucine-rich repeats, and several other domains. These
gelsolin-related actin binding proteins (GRABPs) play
regulatory roles in the assembly and disassembly of
actin filaments; they are involved in F-actin capping,
uncapping, severing, or the nucleation of actin
filaments. Severing of actin filaments is Ca2+
dependent. Villins are also linked to generating bundles
of F-actin with uniform filament polarity, which is most
likely mediated by their extra villin headpiece domain.
Many family members have also adopted functions in the
nucleus, including the regulation of transcription.
Supervillin, gelsolin, and flightless I are involved in
intracellular signaling via nuclear hormone receptors.
The gelsolin-like domain is distantly related to the
actin depolymerizing domains found in cofilin and
similar proteins.
Length = 92
Score = 34.9 bits (81), Expect = 0.003
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 11/42 (26%)
Query: 121 GCSDKQKEGAKKIFKFLIEKK----------PEE-WKALEGK 151
G S+ ++E AK + FL K P+E W+AL GK
Sbjct: 49 GSSEDERELAKDVASFLKPKASLQEVAEGSEPDEFWEALGGK 90
>gnl|CDD|235668 PRK06007, fliF, flagellar MS-ring protein; Reviewed.
Length = 542
Score = 27.9 bits (63), Expect = 2.6
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 6/39 (15%)
Query: 50 LVLVACLACIGSV---LTSPAYTTKYDNV---DLDEIIA 82
A +A I ++ + P Y Y N+ D +I+A
Sbjct: 29 GAGAAVVAAIVALVLWASRPDYRVLYSNLSDQDAGQIVA 67
>gnl|CDD|226561 COG4075, COG4075, Uncharacterized conserved protein, homolog of
nitrogen regulatory protein PII [Function unknown].
Length = 110
Score = 27.1 bits (60), Expect = 2.7
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 136 FLIEKK---PEEWKALEGKYDPSGSYKAKYDAQLKAL 169
FL E + P++WK + DP + KA D KA+
Sbjct: 32 FLHEYRGVSPDKWKGFSKEEDPESAIKAIRDLSDKAV 68
>gnl|CDD|225157 COG2248, COG2248, Predicted hydrolase (metallo-beta-lactamase
superfamily) [General function prediction only].
Length = 304
Score = 27.4 bits (61), Expect = 4.1
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 7/47 (14%)
Query: 102 PDGAELKKVLPDAIATECGG-----CSDKQKEGAKKIFKFLIEKKPE 143
+G++L VL +A G SD Q + +F++EK+P+
Sbjct: 159 REGSKLGYVL--MVAVTDGKSSIVFASDVQGPINDEALEFILEKRPD 203
>gnl|CDD|182171 PRK09966, PRK09966, putative inner membrane diguanylate cyclase;
Provisional.
Length = 407
Score = 27.3 bits (60), Expect = 5.1
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 42 NTIIMFKSLVLVACLACIGSVLTSPAYTTKYDNVDL 77
+ +F +++L+ L + SVLT Y K N+ L
Sbjct: 21 SMTSIFITMMLIWLLLSVTSVLTLKQYAQK--NLAL 54
>gnl|CDD|224767 COG1854, LuxS, LuxS protein involved in autoinducer AI2 synthesis
[Signal transduction mechanisms].
Length = 161
Score = 26.2 bits (58), Expect = 6.7
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 112 PDAIATECGGCSDKQKEGAKKIFKFLIEKKPEEWK 146
P A +CG D EGAK+I + + + +
Sbjct: 120 PGANEKQCGNYKDHSLEGAKEIARKFLARGISINE 154
>gnl|CDD|215062 PLN00118, PLN00118, isocitrate dehydrogenase (NAD+).
Length = 372
Score = 26.8 bits (59), Expect = 6.8
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 63 LTSPAYTTKYDNVDLDEIIAN 83
+ P Y T+YD+VDL I N
Sbjct: 138 YSLPGYKTRYDDVDLVTIREN 158
>gnl|CDD|226980 COG4633, COG4633, Plastocyanin domain containing protein [General
function prediction only].
Length = 272
Score = 26.1 bits (57), Expect = 9.2
Identities = 10/41 (24%), Positives = 15/41 (36%)
Query: 23 MDTGACSPDGAELKMNNSSNTIIMFKSLVLVACLACIGSVL 63
D +P+G + + + KS V L IG L
Sbjct: 24 ADHNGYTPNGLQTEQFKPIKQPLDGKSAVTCNGLGLIGLEL 64
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.134 0.404
Gapped
Lambda K H
0.267 0.0707 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,486,552
Number of extensions: 743937
Number of successful extensions: 677
Number of sequences better than 10.0: 1
Number of HSP's gapped: 677
Number of HSP's successfully gapped: 19
Length of query: 169
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 79
Effective length of database: 6,945,742
Effective search space: 548713618
Effective search space used: 548713618
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.0 bits)