RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13420
(169 letters)
>1k19_A Chemosensory protein CSP2; pheromone, lipid transport; NMR
{Mamestra brassicae} SCOP: a.118.21.1 PDB: 1kx8_A 1kx9_A
1n8u_A* 1n8v_A* 2jnt_A
Length = 112
Score = 144 bits (364), Expect = 2e-45
Identities = 48/101 (47%), Positives = 71/101 (70%)
Query: 68 YTTKYDNVDLDEIIANDRLFTNYYKCLMDTGACSPDGAELKKVLPDAIATECGGCSDKQK 127
YT KYDN++LDEI+AN RL Y C+M+ G CSP+G ELK+ L DAI C C++ Q+
Sbjct: 4 YTDKYDNINLDEILANKRLLVAYVNCVMERGKCSPEGKELKEHLQDAIENGCKKCTENQE 63
Query: 128 EGAKKIFKFLIEKKPEEWKALEGKYDPSGSYKAKYDAQLKA 168
+GA ++ + LI+ + E W+ L KYDP+G+++ KY+ + KA
Sbjct: 64 KGAYRVIEHLIKNEIEIWRELTAKYDPTGNWRKKYEDRAKA 104
Score = 47.2 bits (112), Expect = 8e-08
Identities = 18/34 (52%), Positives = 24/34 (70%)
Query: 5 VDEIIANDRLFSNYYKCLMDTGACSPDGAELKMN 38
+DEI+AN RL Y C+M+ G CSP+G ELK +
Sbjct: 13 LDEILANKRLLVAYVNCVMERGKCSPEGKELKEH 46
>2gvs_A Chemosensory protein CSP-SG4; alpha-coil, lipid binding protein;
NMR {Schistocerca gregaria}
Length = 109
Score = 138 bits (348), Expect = 4e-43
Identities = 58/104 (55%), Positives = 74/104 (71%), Gaps = 2/104 (1%)
Query: 68 YTTKYDNVDLDEIIANDRLFTNYYKCLM--DTGACSPDGAELKKVLPDAIATECGGCSDK 125
YTTKYDNV+LDEI+ANDRL Y +CL+ D C+ DG ELK V+PDA++ EC C++K
Sbjct: 4 YTTKYDNVNLDEILANDRLLNKYVQCLLEDDESNCTADGKELKSVIPDALSNECAKCNEK 63
Query: 126 QKEGAKKIFKFLIEKKPEEWKALEGKYDPSGSYKAKYDAQLKAL 169
QKEG KK+ K LI KP+ W L+ KYDP G+Y KY+ + K L
Sbjct: 64 QKEGTKKVLKHLINHKPDVWAQLKAKYDPDGTYSKKYEDREKEL 107
Score = 43.7 bits (103), Expect = 2e-06
Identities = 18/36 (50%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Query: 5 VDEIIANDRLFSNYYKCLM--DTGACSPDGAELKMN 38
+DEI+ANDRL + Y +CL+ D C+ DG ELK
Sbjct: 13 LDEILANDRLLNKYVQCLLEDDESNCTADGKELKSV 48
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.4 bits (68), Expect = 0.33
Identities = 16/114 (14%), Positives = 36/114 (31%), Gaps = 35/114 (30%)
Query: 56 LACIGSVLTSPAYTTKYDNVDL--------DEIIANDRL-FTNYYKCLMDTGACSPDGAE 106
LA + V+ S V++ + D L +NY ++ G + ++
Sbjct: 1770 LASLADVM-SIE-----SLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQ 1823
Query: 107 --LKKVLPDAIATECGG--------CSDKQ------KEG---AKKIFKFLIEKK 141
L+ V+ + + G ++Q + F+ +K
Sbjct: 1824 EALQYVV-ERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQK 1876
>1j98_A Autoinducer-2 production protein LUXS; autoinducer synthesis,
signaling protein; 1.20A {Bacillus subtilis} SCOP:
d.185.1.2 PDB: 1jqw_A 1jvi_A* 1ie0_A 2fqo_A* 2fqt_A*
1ycl_A*
Length = 157
Score = 29.2 bits (66), Expect = 0.40
Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
Query: 107 LKKVL-----PDAIATECGGCSDKQKEGAKKIFKFLIEKKPEEWK 146
+K+ + P A +CG EGAK++ +F + + EE
Sbjct: 109 MKEAVEITEIPAANEKQCGQAKLHDLEGAKRLMRFWLSQDKEELL 153
>3ikm_A DNA polymerase subunit gamma-1; human mitochondrial DNA polymerase,
disease mutation, DNA replication, DNA-binding,
DNA-directed DNA polymerase; HET: DNA; 3.24A {Homo
sapiens}
Length = 1172
Score = 27.9 bits (61), Expect = 2.2
Identities = 11/38 (28%), Positives = 15/38 (39%), Gaps = 2/38 (5%)
Query: 122 CSDKQKEGAKKIFKFLIEKKPEEWKALEG--KYDPSGS 157
S E A + + + KP W EG +Y P G
Sbjct: 77 QSLPYLEAANLLLQAQLPPKPPAWAWAEGWTRYGPEGE 114
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.7 bits (58), Expect = 5.2
Identities = 19/123 (15%), Positives = 38/123 (30%), Gaps = 42/123 (34%)
Query: 61 SVLTSPAYTTKYDNV--DLDEIIANDRLF-------TNYYKCLMDTGACSPDGAELKKVL 111
S+L+ + D++ D + RLF + ++ + K L
Sbjct: 44 SILSK----EEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEE-VLRIN----YKFL 94
Query: 112 PDAIATECGG---------------CSDKQ---------KEGAKKIFKFLIEKKPEEWKA 147
I TE +D Q + K+ + L+E +P +
Sbjct: 95 MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL 154
Query: 148 LEG 150
++G
Sbjct: 155 IDG 157
>3bqk_A Pfemp1 protein, erythrocyte membrane protein 1; malaria, pregnancy,
VAR2CSA encoded pfemp1 protein, DBL3X DO chondroitin
sulphate A; 1.80A {Plasmodium falciparum} PDB: 3bqi_A
3bql_A 3cml_A 3cpz_A
Length = 360
Score = 26.1 bits (57), Expect = 7.1
Identities = 12/64 (18%), Positives = 22/64 (34%), Gaps = 5/64 (7%)
Query: 100 CSPDGAELKKVLPDAIATECGGCSDKQKEGAKKIFKFLIEKKPEEWKALEGKYDPSGSYK 159
+ + G C K ++ +K I +K +EW + KY+ K
Sbjct: 262 NGKNEKKCINSKSGQGDKIQGACKRKCEK-----YKKYISEKKQEWDKQKTKYENKYVGK 316
Query: 160 AKYD 163
+ D
Sbjct: 317 SASD 320
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.404
Gapped
Lambda K H
0.267 0.0664 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,647,410
Number of extensions: 148820
Number of successful extensions: 330
Number of sequences better than 10.0: 1
Number of HSP's gapped: 328
Number of HSP's successfully gapped: 21
Length of query: 169
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 82
Effective length of database: 4,272,666
Effective search space: 350358612
Effective search space used: 350358612
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.7 bits)