RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13420
         (169 letters)



>d1n8va_ a.118.21.1 (A:) Chemosensory protein Csp2 {Cabbage moth
           (Mamestra brassicae) [TaxId: 55057]}
          Length = 101

 Score =  155 bits (393), Expect = 2e-50
 Identities = 47/100 (47%), Positives = 70/100 (70%)

Query: 68  YTTKYDNVDLDEIIANDRLFTNYYKCLMDTGACSPDGAELKKVLPDAIATECGGCSDKQK 127
           YT KYDN++LDEI+AN RL   Y  C+M+ G CSP+G ELK+ L DAI   C  C++ Q+
Sbjct: 2   YTDKYDNINLDEILANKRLLVAYVNCVMERGKCSPEGKELKEHLQDAIENGCKKCTENQE 61

Query: 128 EGAKKIFKFLIEKKPEEWKALEGKYDPSGSYKAKYDAQLK 167
           +GA ++ + LI+ + E W+ L  KYDP+G+++ KY+ + K
Sbjct: 62  KGAYRVIEHLIKNEIEIWRELTAKYDPTGNWRKKYEDRAK 101



 Score = 53.1 bits (128), Expect = 2e-10
 Identities = 18/32 (56%), Positives = 23/32 (71%)

Query: 5  VDEIIANDRLFSNYYKCLMDTGACSPDGAELK 36
          +DEI+AN RL   Y  C+M+ G CSP+G ELK
Sbjct: 11 LDEILANKRLLVAYVNCVMERGKCSPEGKELK 42


>d1j98a_ d.185.1.2 (A:) Autoinducer-2 production protein LuxS
           {Bacillus subtilis [TaxId: 1423]}
          Length = 154

 Score = 30.4 bits (69), Expect = 0.050
 Identities = 11/35 (31%), Positives = 17/35 (48%)

Query: 112 PDAIATECGGCSDKQKEGAKKIFKFLIEKKPEEWK 146
           P A   +CG       EGAK++ +F + +  EE  
Sbjct: 116 PAANEKQCGQAKLHDLEGAKRLMRFWLSQDKEELL 150


>d1j6xa_ d.185.1.2 (A:) Autoinducer-2 production protein LuxS
           {Helicobacter pylori [TaxId: 210]}
          Length = 151

 Score = 28.5 bits (64), Expect = 0.25
 Identities = 9/35 (25%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 112 PDAIATECGGCSDKQKEGAKKIFKFLIEKKPEEWK 146
           P +   +CG  ++   EGA+ + +  ++K+  EW 
Sbjct: 115 PASNEKQCGWAANHTLEGAQNLARAFLDKR-AEWS 148


>d1xg7a_ a.96.1.6 (A:) Hypothetical protein PF0904 {Pyrococcus
           furiosus [TaxId: 2261]}
          Length = 245

 Score = 25.9 bits (57), Expect = 2.6
 Identities = 7/32 (21%), Positives = 15/32 (46%), Gaps = 2/32 (6%)

Query: 129 GAKKIFKFLIEKKPEEWKALEGKYDPSGSYKA 160
           G++++ + +     E  K +E K D    + A
Sbjct: 3   GSRELVEIIKGIGIEGAKEVEEKVDR--QFYA 32


>d1nyna_ d.235.1.1 (A:) Hypothetical protein Yhr087W {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 111

 Score = 24.4 bits (53), Expect = 4.4
 Identities = 9/61 (14%), Positives = 19/61 (31%), Gaps = 9/61 (14%)

Query: 75  VDLDEIIANDRLFTNYYKCLMDTGACSPDGAELKKVLPDAIATECGGCSDKQKEGAKKIF 134
             L E++    +FT       +    +   A+++            G   K +E    I 
Sbjct: 36  GKLSEVVELFEVFTPQDGRGAEGELGAASKAQVENEF---------GKGKKIEEVIDLIL 86

Query: 135 K 135
           +
Sbjct: 87  R 87


>d2j07a1 a.99.1.1 (A:172-405) C-terminal domain of DNA photolyase
           {Thermus thermophilus [TaxId: 274]}
          Length = 234

 Score = 25.3 bits (54), Expect = 4.5
 Identities = 3/19 (15%), Positives = 10/19 (52%)

Query: 151 KYDPSGSYKAKYDAQLKAL 169
           ++DP G +  ++  +  + 
Sbjct: 205 RHDPEGRWLKRWAPEYPSY 223


>d1zroa1 a.264.1.1 (A:8-282) Erythrocyte binding antigen region II
           {Plasmodium falciparum [TaxId: 5833]}
          Length = 275

 Score = 25.0 bits (54), Expect = 5.0
 Identities = 7/47 (14%), Positives = 14/47 (29%)

Query: 107 LKKVLPDAIATECGGCSDKQKEGAKKIFKFLIEKKPEEWKALEGKYD 153
            K               +K+       ++  I +   EW  L  +Y+
Sbjct: 188 AKLPKSKCKNNALYEACEKECIDPCMKYRDWIIRSKFEWHTLSKEYE 234


>d1zroa2 a.264.1.1 (A:283-596) Erythrocyte binding antigen region II
           {Plasmodium falciparum [TaxId: 5833]}
          Length = 314

 Score = 24.2 bits (52), Expect = 8.6
 Identities = 9/37 (24%), Positives = 14/37 (37%)

Query: 117 TECGGCSDKQKEGAKKIFKFLIEKKPEEWKALEGKYD 153
            +   C D   +     +K  I KK EE+     +Y 
Sbjct: 226 CKEKPCEDDNCKRKCNSYKEWISKKKEEYNKQAKQYQ 262


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.134    0.404 

Gapped
Lambda     K      H
   0.267   0.0453    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 656,923
Number of extensions: 29261
Number of successful extensions: 104
Number of sequences better than 10.0: 1
Number of HSP's gapped: 104
Number of HSP's successfully gapped: 15
Length of query: 169
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 90
Effective length of database: 1,322,926
Effective search space: 119063340
Effective search space used: 119063340
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.7 bits)