Query psy13425
Match_columns 224
No_of_seqs 172 out of 359
Neff 3.7
Searched_HMMs 29240
Date Fri Aug 16 19:09:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13425.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13425hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5c_H RP30, RP40, 40S ribosom 100.0 2.6E-85 8.9E-90 559.9 16.6 188 1-223 1-189 (190)
2 2xzm_3 RPS7E, 40S ribosomal pr 100.0 1E-74 3.4E-79 497.6 12.2 186 4-222 2-189 (197)
3 3u5c_H RP30, RP40, 40S ribosom 99.8 7.2E-21 2.5E-25 162.8 3.6 76 14-102 23-107 (190)
4 2xzm_3 RPS7E, 40S ribosomal pr 99.5 1.8E-15 6.1E-20 130.2 3.8 72 15-100 23-107 (197)
5 2cxc_A NUSA; transcription ter 92.1 0.69 2.4E-05 37.6 8.3 100 90-216 38-137 (144)
6 1k0r_A NUSA; two component arr 28.2 2E+02 0.0068 26.5 8.1 86 104-220 260-345 (366)
7 4gzl_A RAS-related C3 botulinu 25.9 2.2E+02 0.0075 21.7 7.9 81 47-133 68-148 (204)
8 4hlb_A Uncharacterized protein 22.4 1.1E+02 0.0036 23.7 4.3 29 89-117 55-84 (115)
9 1qp6_A Protein (alpha2D); de n 21.3 22 0.00077 22.5 0.2 9 110-118 3-11 (35)
10 3bwd_D RAC-like GTP-binding pr 20.4 2.2E+02 0.0076 20.5 5.7 49 84-132 77-125 (182)
No 1
>3u5c_H RP30, RP40, 40S ribosomal protein S7-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_H
Probab=100.00 E-value=2.6e-85 Score=559.86 Aligned_cols=188 Identities=47% Similarity=0.823 Sum_probs=177.2
Q ss_pred CCcccccccccCCCcchhhhhHHHHhhhccc-ChhhHhccceeEeeeeeEEEeCCceeeEEEeccchhhhhhhhcccccc
Q psy13425 1 MFLANSKIIKKGGEPDAFENSISQALLELEM-NSDLKAQLRELYITRAKEIDLGGKKSVIVYVPMPQLKQFQKIQPRLVP 79 (224)
Q Consensus 1 m~~~~~ki~k~~~~p~elE~~vaq~L~dLe~-~~dlk~~~kel~i~~~KaI~v~~~k~~~i~vP~~~l~~~~kiq~rlv~ 79 (224)
|.+.++||+||+ |+|||.+++|||.|||+ |+|||++|++|+|+++|||+||||+
T Consensus 1 m~~~~~KI~k~~--p~e~E~~vaqal~dLE~~~~dLK~~Lr~L~i~~akEiev~~~k----------------------- 55 (190)
T 3u5c_H 1 MSAPQAKILSQA--PTELELQVAQAFVELENSSPELKAELRPLQFKSIREIDVAGGK----------------------- 55 (190)
T ss_dssp ---CCSSTTCSS--CCSHHHHHHHHHHHHHCSHHHHTTSSSSCCCSCEEEEECTTSC-----------------------
T ss_pred CCccccccCCCC--CCHHHHHHHHHHHHHhhCcHHHHHhhhcceeeeEEEEEecCCc-----------------------
Confidence 555578999996 99999999999999995 5899999999999999999998866
Q ss_pred hhhccCCceEEEEEecCcchhhhhhhhhhhHHHhhhhcCCceEEEEeeeeeccCCCCcccccCcccccCCcchhhhhHHh
Q psy13425 80 KEIDLGGKKSVIVYVPMPQLKQFQKIQPRLVRELEKKFSGKHVVFIGDRKILPKPTRKTRAKTKQKRPRSRTLTSVYDCI 159 (224)
Q Consensus 80 eEkk~~~k~vvvI~vP~p~~k~~~k~q~rLvrELEkkfsGk~Vvfiaqrrilpkp~r~~r~~~~q~rprsrtlt~v~~aI 159 (224)
+||+||||+|++++||++|.||++||||||||+||+|||||||||||+++++ ++|+||||||||||||||
T Consensus 56 --------KAivIfVP~p~lk~f~KIq~rLvrELEKKfsgkhVvfiAqRrIlpkp~r~~~--~kqkRPRSRTLTaVhdai 125 (190)
T 3u5c_H 56 --------KALAIFVPVPSLAGFHKVQTKLTRELEKKFQDRHVIFLAERRILPKPSRTSR--QVQKRPRSRTLTAVHDKI 125 (190)
T ss_dssp --------EEEEEEECSSSHHHHHHHTHHHHHHHHHTTCSEEEEEEECCCCCCCCCSSSC--CCSCCCGGGSHHHHHHHH
T ss_pred --------EEEEEEecHHHHHHHHHHHHHHHHHHHhccCCCEEEEEecceEcCCCccCCc--ccccCCCCCchhHHHHHH
Confidence 7999999999999999999999999999999999999999999999999875 589999999999999999
Q ss_pred hhhhcccceeeeeeEEEeeCCeEEEEEEecccccccccchhhhHHHHHHHhhCCeEEEEcCCCC
Q psy13425 160 LEDIVFPAEIVGKRIKVKLDGKQLIKVHLDKNQQTNIEHKTDTFSQIYKKLTGREVNFEFPEPY 223 (224)
Q Consensus 160 LeDLV~PseIVGKRir~~lDGskl~KV~LD~~d~~~ve~Kletfs~VYkkLTGKdv~FeFp~~~ 223 (224)
|||||||+|||||||||++|||+++|||||++||||+|||+|||++|||+||||||+||||+..
T Consensus 126 LeDLv~P~eIVGKRir~rlDGskl~KV~LD~~~~~~ve~Kl~tfs~VYkkLTgkdv~FeFp~~~ 189 (190)
T 3u5c_H 126 LEDLVFPTEIVGKRVRYLVGGNKIQKVLLDSKDVQQIDYKLESFQAVYNKLTGKQIVFEIPSET 189 (190)
T ss_dssp HHHHSCSSCEEEEEEEECSSSCEEEEEEECSSSTHHHHTTHHHHHHHHHHHHSCEEEEECCC--
T ss_pred HhhcccchheeeeEEEEecCCCEEEEEEECHHHhcccchhhHHHHHHHHHhhCCcEEEEecCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999753
No 2
>2xzm_3 RPS7E, 40S ribosomal protein RPS7E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_3
Probab=100.00 E-value=1e-74 Score=497.65 Aligned_cols=186 Identities=38% Similarity=0.642 Sum_probs=176.7
Q ss_pred ccccccccCCCcchhhhhHHHHhhhcccCh-hhHhccceeEeeeeeEEEeC-CceeeEEEeccchhhhhhhhcccccchh
Q psy13425 4 ANSKIIKKGGEPDAFENSISQALLELEMNS-DLKAQLRELYITRAKEIDLG-GKKSVIVYVPMPQLKQFQKIQPRLVPKE 81 (224)
Q Consensus 4 ~~~ki~k~~~~p~elE~~vaq~L~dLe~~~-dlk~~~kel~i~~~KaI~v~-~~k~~~i~vP~~~l~~~~kiq~rlv~eE 81 (224)
|++||+|+ |+|++||.+++|||.|||+|+ |||++|++++|+++|||+|| |++
T Consensus 2 a~~ki~k~-~~p~e~E~~VaqaL~dLE~~~~dLK~~l~~l~i~~aKeiev~~~~~------------------------- 55 (197)
T 2xzm_3 2 ALAKFHKK-QSLTKIEEQVGSALVELQNTHPDLKTSLESIILTQVKEFQINKTNK------------------------- 55 (197)
T ss_dssp CCTTCSSC-SCCCHHHHHHHHHHHHHHHHCSHHHHHHHHCCEEEEEEEEEECTTC-------------------------
T ss_pred CcccccCC-CCCCHHHHHHHHHHHHHHhcCHHHHHhhhhcceEEEEEEEecCCCC-------------------------
Confidence 56799999 899999999999999999875 99999999999999999997 553
Q ss_pred hccCCceEEEEEecCcchhhhhhhhhhhHHHhhhhcCCceEEEEeeeeeccCCCCcccccCcccccCCcchhhhhHHhhh
Q psy13425 82 IDLGGKKSVIVYVPMPQLKQFQKIQPRLVRELEKKFSGKHVVFIGDRKILPKPTRKTRAKTKQKRPRSRTLTSVYDCILE 161 (224)
Q Consensus 82 kk~~~k~vvvI~vP~p~~k~~~k~q~rLvrELEkkfsGk~Vvfiaqrrilpkp~r~~r~~~~q~rprsrtlt~v~~aILe 161 (224)
.|+++|+|+||+|++++||++|.||++|||||| |+||+|||||||||+|+++ +++|+|||||||||||||||+
T Consensus 56 ---k~kkaivIfVP~~~lk~f~kiq~rLvrELEKKf-g~~Vv~ia~RrIl~kp~~~---~~~q~rprsrTltaV~~aiLe 128 (197)
T 2xzm_3 56 ---KAKSAVLIYVHFQSYRVLLSAARKLIIELEKKL-KQIVFFTAQRKIESKWVKE---HKSQQRPRSRCLTYVYDALLD 128 (197)
T ss_dssp ---CEEEEEEEEECGGGHHHHHHHHHHHHHHHHHTT-SSEEEEEECCCCCCSSCCC---CTTCCCCGGGSHHHHHHHHHH
T ss_pred ---ccceEEEEEEccchhhHHHHHHHHHHHHHHHHh-CCcEEEEecccccCCCccc---CccccCCCccchhhhHHHHHH
Confidence 134799999999999999999999999999999 8999999999999999987 479999999999999999999
Q ss_pred hhcccceeeeeeEEEeeCCeEEEEEEecccccccccchhhhHHHHHHHhhCCeEEEEcCCC
Q psy13425 162 DIVFPAEIVGKRIKVKLDGKQLIKVHLDKNQQTNIEHKTDTFSQIYKKLTGREVNFEFPEP 222 (224)
Q Consensus 162 DLV~PseIVGKRir~~lDGskl~KV~LD~~d~~~ve~Kletfs~VYkkLTGKdv~FeFp~~ 222 (224)
|||||+|||||||||++|||+++||+||++||+++|||+|+|++||++|||+||+||||++
T Consensus 129 DLv~PaeIvGkRir~~~DGs~~~KV~Ld~~d~~~ve~Kletf~~VykkLTGkdV~feFp~~ 189 (197)
T 2xzm_3 129 DLLLPSTLIGKRIRARLDGTSFYRIQLDQNDRDFLEEKLDAITHIYKTVTTREVTFEFKED 189 (197)
T ss_dssp HHSTTSCCSEEEEEECSSSCEECCEEEESTTHHHHHHHHHHHHHHHHHHSCCBCCEEEECC
T ss_pred HhccchheeeeEEEEecCCCEEEEEEeCHHHhcccccchHHHHHHHHHHhCCCEEEEEcCc
Confidence 9999999999999999999999999999999999999999999999999999999999975
No 3
>3u5c_H RP30, RP40, 40S ribosomal protein S7-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_H
Probab=99.81 E-value=7.2e-21 Score=162.79 Aligned_cols=76 Identities=25% Similarity=0.470 Sum_probs=68.8
Q ss_pred CcchhhhhH---HHHhhhcccChhhHhccceeEeee-eeEEEeCCceeeEEEeccchhhhhhhhcccccch-hhccCCce
Q psy13425 14 EPDAFENSI---SQALLELEMNSDLKAQLRELYITR-AKEIDLGGKKSVIVYVPMPQLKQFQKIQPRLVPK-EIDLGGKK 88 (224)
Q Consensus 14 ~p~elE~~v---aq~L~dLe~~~dlk~~~kel~i~~-~KaI~v~~~k~~~i~vP~~~l~~~~kiq~rlv~e-Ekk~~~k~ 88 (224)
...|||+++ .++|++|+|+ +++|++|++ .|||+ ||||||||++|||||.|||+| ||||||+|
T Consensus 23 al~dLE~~~~dLK~~Lr~L~i~-----~akEiev~~~kKAiv--------IfVP~p~lk~f~KIq~rLvrELEKKfsgkh 89 (190)
T 3u5c_H 23 AFVELENSSPELKAELRPLQFK-----SIREIDVAGGKKALA--------IFVPVPSLAGFHKVQTKLTRELEKKFQDRH 89 (190)
T ss_dssp HHHHHHCSHHHHTTSSSSCCCS-----CEEEEECTTSCEEEE--------EEECSSSHHHHHHHTHHHHHHHHHTTCSEE
T ss_pred HHHHHhhCcHHHHHhhhcceee-----eEEEEEecCCcEEEE--------EEecHHHHHHHHHHHHHHHHHHHhccCCCE
Confidence 357899665 4489999999 999999985 78999 999999999999999999999 99999999
Q ss_pred EEEEE----ecCcchhhh
Q psy13425 89 SVIVY----VPMPQLKQF 102 (224)
Q Consensus 89 vvvI~----vP~p~~k~~ 102 (224)
|+||| +|+|.+++.
T Consensus 90 VvfiAqRrIlpkp~r~~~ 107 (190)
T 3u5c_H 90 VIFLAERRILPKPSRTSR 107 (190)
T ss_dssp EEEEECCCCCCCCCSSSC
T ss_pred EEEEecceEcCCCccCCc
Confidence 99999 999988764
No 4
>2xzm_3 RPS7E, 40S ribosomal protein RPS7E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_3
Probab=99.54 E-value=1.8e-15 Score=130.21 Aligned_cols=72 Identities=14% Similarity=0.174 Sum_probs=64.1
Q ss_pred cchhhhhH---HHHhhhcccChhhHhccceeEee--e---eeEEEeCCceeeEEEeccchhhhhhhhcccccch-hhccC
Q psy13425 15 PDAFENSI---SQALLELEMNSDLKAQLRELYIT--R---AKEIDLGGKKSVIVYVPMPQLKQFQKIQPRLVPK-EIDLG 85 (224)
Q Consensus 15 p~elE~~v---aq~L~dLe~~~dlk~~~kel~i~--~---~KaI~v~~~k~~~i~vP~~~l~~~~kiq~rlv~e-Ekk~~ 85 (224)
..|||+++ .++|++|+++ +++|++++ + .|+|+ ||||+|++++|||||.||++| ||||
T Consensus 23 L~dLE~~~~dLK~~l~~l~i~-----~aKeiev~~~~~k~kkaiv--------IfVP~~~lk~f~kiq~rLvrELEKKf- 88 (197)
T 2xzm_3 23 LVELQNTHPDLKTSLESIILT-----QVKEFQINKTNKKAKSAVL--------IYVHFQSYRVLLSAARKLIIELEKKL- 88 (197)
T ss_dssp HHHHHHHCSHHHHHHHHCCEE-----EEEEEEEECTTCCEEEEEE--------EEECGGGHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHhcCHHHHHhhhhcceE-----EEEEEEecCCCCccceEEE--------EEEccchhhHHHHHHHHHHHHHHHHh-
Confidence 57899864 5699999999 99999997 4 34777 999999999999999999999 9999
Q ss_pred CceEEEEE----ecCcchh
Q psy13425 86 GKKSVIVY----VPMPQLK 100 (224)
Q Consensus 86 ~k~vvvI~----vP~p~~k 100 (224)
|+||+||+ +|+|.++
T Consensus 89 g~~Vv~ia~RrIl~kp~~~ 107 (197)
T 2xzm_3 89 KQIVFFTAQRKIESKWVKE 107 (197)
T ss_dssp SSEEEEEECCCCCCSSCCC
T ss_pred CCcEEEEecccccCCCccc
Confidence 89999999 8999764
No 5
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=92.06 E-value=0.69 Score=37.56 Aligned_cols=100 Identities=11% Similarity=0.183 Sum_probs=67.3
Q ss_pred EEEEecCcchhhhhhhhhhhHHHhhhhcCCceEEEEeeeeeccCCCCcccccCcccccCCcchhhhhHHhhhhhccccee
Q psy13425 90 VIVYVPMPQLKQFQKIQPRLVRELEKKFSGKHVVFIGDRKILPKPTRKTRAKTKQKRPRSRTLTSVYDCILEDIVFPAEI 169 (224)
Q Consensus 90 vvI~vP~p~~k~~~k~q~rLvrELEkkfsGk~Vvfiaqrrilpkp~r~~r~~~~q~rprsrtlt~v~~aILeDLV~PseI 169 (224)
+++.|+.....+-.-.....++.+.+.+ |.+|-+|. ++... ...+..+++|+++
T Consensus 38 ~i~vVk~g~vGa~IG~~G~ri~~i~~el-gekIdIV~-------~s~d~------------------~~fI~naLsPA~V 91 (144)
T 2cxc_A 38 LIFLVSEGEAGRAIGRGGRLIKLLREAL-GKNIEVVE-------YSSDL------------------ERIVKNLFPGVKI 91 (144)
T ss_dssp EEEEECTTCHHHHHCGGGHHHHHHHHHH-SSEEEEEE-------CCSSH------------------HHHHHHHSTTSCE
T ss_pred EEEEEeCCCccccCccCchHHHHHHHHh-CCeeEEEE-------cCCCH------------------HHHHHHhcCCceE
Confidence 3334443333333222333444444444 99998887 33332 2678899999999
Q ss_pred eeeeEEEeeCCeEEEEEEecccccccccchhhhHHHHHHHhhCCeEE
Q psy13425 170 VGKRIKVKLDGKQLIKVHLDKNQQTNIEHKTDTFSQIYKKLTGREVN 216 (224)
Q Consensus 170 VGKRir~~lDGskl~KV~LD~~d~~~ve~Kletfs~VYkkLTGKdv~ 216 (224)
.+-.+... ||++.+.|.+++.|....--|-..-...-.+|||....
T Consensus 92 ~~V~i~~~-~~~~~~~V~V~~~q~slAIGk~G~NvrLa~~Ltg~~id 137 (144)
T 2cxc_A 92 ESINVRER-NGVKQVVIKVSEDDKGAAIGKGGKNVKRARLVLSKLFG 137 (144)
T ss_dssp EEEEEEEE-TTEEEEEEEECTTTHHHHHCGGGHHHHHHHHHHHHHHC
T ss_pred EEEEEeec-CCcEEEEEEEChHHhhhccCCCCHHHHHHHHHhCCeeC
Confidence 99987666 99999999999988777766766667777888886543
No 6
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=28.21 E-value=2e+02 Score=26.48 Aligned_cols=86 Identities=16% Similarity=0.205 Sum_probs=63.9
Q ss_pred hhhhhhHHHhhhhcCCceEEEEeeeeeccCCCCcccccCcccccCCcchhhhhHHhhhhhcccceeeeeeEEEeeCCeEE
Q psy13425 104 KIQPRLVRELEKKFSGKHVVFIGDRKILPKPTRKTRAKTKQKRPRSRTLTSVYDCILEDIVFPAEIVGKRIKVKLDGKQL 183 (224)
Q Consensus 104 k~q~rLvrELEkkfsGk~Vvfiaqrrilpkp~r~~r~~~~q~rprsrtlt~v~~aILeDLV~PseIVGKRir~~lDGskl 183 (224)
.+-..+++|| .|..|-+|. ++... ...+...++|+++.+-.+. ..| .+.
T Consensus 260 ~rI~~i~~eL----~gekIDIi~-------~s~dp------------------~~fi~nalsPA~V~~V~~~-~~~-~~~ 308 (366)
T 1k0r_A 260 QRVRNVMSEL----SGEKIDIID-------YDDDP------------------ARFVANALSPAKVVSVSVI-DQT-ARA 308 (366)
T ss_dssp HHHHHHHHHT----TTCEEEEEE-------CCSSH------------------HHHHHHHTTTSCCSEEEEE-ETT-TTE
T ss_pred hHHHHHHHHh----CCCeEEEEE-------cCCCH------------------HHHHHHhcCCcceeEEEEE-cCC-CcE
Confidence 4445677777 799998887 43332 2567889999999888644 334 789
Q ss_pred EEEEecccccccccchhhhHHHHHHHhhCCeEEEEcC
Q psy13425 184 IKVHLDKNQQTNIEHKTDTFSQIYKKLTGREVNFEFP 220 (224)
Q Consensus 184 ~KV~LD~~d~~~ve~Kletfs~VYkkLTGKdv~FeFp 220 (224)
+.|.+++.|....--|-..=...-.+|||..+....-
T Consensus 309 a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~ 345 (366)
T 1k0r_A 309 ARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGD 345 (366)
T ss_dssp EEEEECGGGHHHHHCGGGHHHHHHHHHHCCEEEEEES
T ss_pred EEEEEChHHhhhccCCCcHHHHHHHHHHCCeeeeeEH
Confidence 9999998887776667666677789999999887643
No 7
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=25.91 E-value=2.2e+02 Score=21.67 Aligned_cols=81 Identities=10% Similarity=0.289 Sum_probs=53.0
Q ss_pred eeEEEeCCceeeEEEeccchhhhhhhhcccccchhhccCCceEEEEEecCcchhhhhhhhhhhHHHhhhhcCCceEEEEe
Q psy13425 47 AKEIDLGGKKSVIVYVPMPQLKQFQKIQPRLVPKEIDLGGKKSVIVYVPMPQLKQFQKIQPRLVRELEKKFSGKHVVFIG 126 (224)
Q Consensus 47 ~KaI~v~~~k~~~i~vP~~~l~~~~kiq~rlv~eEkk~~~k~vvvI~vP~p~~k~~~k~q~rLvrELEkkfsGk~Vvfia 126 (224)
...+.+++....+.++-.|-...|+.+... -+.+-+++++.+......++......+..+++....+..+++++
T Consensus 68 ~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~------~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~ 141 (204)
T 4gzl_A 68 SANVMVDGKPVNLGLWDTAGLEDYDRLRPL------SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVG 141 (204)
T ss_dssp EEEEECC-CEEEEEEEEECCSGGGTTTGGG------GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEE
T ss_pred EEEEEECCEEEEEEEEECCCchhhHHHHHH------HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEE
Confidence 345556666655556666655555543332 23355677777666677778777777888898888889999999
Q ss_pred eeeeccC
Q psy13425 127 DRKILPK 133 (224)
Q Consensus 127 qrrilpk 133 (224)
...=++.
T Consensus 142 nK~Dl~~ 148 (204)
T 4gzl_A 142 TKLDLRD 148 (204)
T ss_dssp ECHHHHT
T ss_pred echhhcc
Confidence 7665543
No 8
>4hlb_A Uncharacterized protein; alpha-lytic protease prodomain-like fold, structural genomic center for structural genomics, JCSG; 1.80A {Desulfovibrio piger}
Probab=22.40 E-value=1.1e+02 Score=23.65 Aligned_cols=29 Identities=31% Similarity=0.419 Sum_probs=21.9
Q ss_pred EEEEE-ecCcchhhhhhhhhhhHHHhhhhc
Q psy13425 89 SVIVY-VPMPQLKQFQKIQPRLVRELEKKF 117 (224)
Q Consensus 89 vvvI~-vP~p~~k~~~k~q~rLvrELEkkf 117 (224)
.+|++ -.+-.+..|..+-.|-+|||...|
T Consensus 55 ivfvaadrkmtraefsaiasrsirelkerf 84 (115)
T 4hlb_A 55 IVFVAADRKMTRAEFSAIASRSIRELKERF 84 (115)
T ss_dssp EEEEESSSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeccchhhHHHHHHHHHHHHHHHHHHh
Confidence 55555 334466778889999999999888
No 9
>1qp6_A Protein (alpha2D); de novo design, protein design, protein folding, bisecting U motif, four-helix bundle, helix-turn-helix, de novo protein; NMR {Synthetic} SCOP: k.16.1.1
Probab=21.30 E-value=22 Score=22.51 Aligned_cols=9 Identities=78% Similarity=1.054 Sum_probs=7.1
Q ss_pred HHHhhhhcC
Q psy13425 110 VRELEKKFS 118 (224)
Q Consensus 110 vrELEkkfs 118 (224)
+.||||||.
T Consensus 3 veelekkfk 11 (35)
T 1qp6_A 3 VEELEKKFK 11 (35)
T ss_dssp SHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 578999984
No 10
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=20.43 E-value=2.2e+02 Score=20.49 Aligned_cols=49 Identities=16% Similarity=0.333 Sum_probs=34.1
Q ss_pred cCCceEEEEEecCcchhhhhhhhhhhHHHhhhhcCCceEEEEeeeeecc
Q psy13425 84 LGGKKSVIVYVPMPQLKQFQKIQPRLVRELEKKFSGKHVVFIGDRKILP 132 (224)
Q Consensus 84 ~~~k~vvvI~vP~p~~k~~~k~q~rLvrELEkkfsGk~Vvfiaqrrilp 132 (224)
+.+-+++++.+......++......+..+++...++.++++++...=+.
T Consensus 77 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 125 (182)
T 3bwd_D 77 YRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLR 125 (182)
T ss_dssp GTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHH
T ss_pred ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhh
Confidence 3445666666665566667666656778888877788999999765543
Done!