Query psy13425
Match_columns 224
No_of_seqs 172 out of 359
Neff 3.7
Searched_HMMs 13730
Date Fri Aug 16 19:09:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13425.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/13425hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1t0hb_ c.37.1.1 (B:) Guanylat 35.7 18 0.0013 29.5 4.3 48 88-139 22-80 (219)
2 d2bcgg2 c.3.1.3 (G:400-446) Gu 24.7 9.1 0.00067 24.5 0.5 23 196-218 22-44 (47)
3 d1q98a_ c.47.1.10 (A:) Thiol p 20.1 63 0.0046 23.1 4.6 43 83-126 39-81 (164)
4 d1u7za_ c.72.3.1 (A:) Coenzyme 19.5 49 0.0036 25.6 4.1 72 82-162 2-82 (223)
5 d1m7ba_ c.37.1.8 (A:) RhoE (RN 18.5 89 0.0065 22.0 5.1 50 84-133 71-120 (179)
6 d1mh1a_ c.37.1.8 (A:) Rac {Hum 16.9 97 0.0071 21.6 5.0 51 84-134 74-124 (183)
7 d1hh2p3 d.52.3.1 (P:277-344) T 16.4 1.4E+02 0.01 19.4 5.3 58 159-218 6-63 (68)
8 d1nm3a2 c.47.1.10 (A:3-165) N- 14.8 1.1E+02 0.0081 21.7 4.9 23 169-191 120-142 (163)
9 d1qxha_ c.47.1.10 (A:) Thiol p 14.7 1E+02 0.0074 21.8 4.6 44 82-126 40-83 (164)
10 d2qqra2 b.34.9.1 (A:956-1011) 12.7 65 0.0047 20.9 2.6 25 160-184 13-42 (56)
No 1
>d1t0hb_ c.37.1.1 (B:) Guanylate kinase-like domain of the L-type calcium channel {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=35.73 E-value=18 Score=29.47 Aligned_cols=48 Identities=27% Similarity=0.538 Sum_probs=28.0
Q ss_pred eEEEEEecCcchhhh---hhhhhhhHHHhhhhcCCceEEEE--------eeeeeccCCCCccc
Q psy13425 88 KSVIVYVPMPQLKQF---QKIQPRLVRELEKKFSGKHVVFI--------GDRKILPKPTRKTR 139 (224)
Q Consensus 88 ~vvvI~vP~p~~k~~---~k~q~rLvrELEkkfsGk~Vvfi--------aqrrilpkp~r~~r 139 (224)
.+|+|. |.+|.| .-.|.+|...|-+.|.|+ +.+. |+|..+-.|.+...
T Consensus 22 PvvlvG---PsLkGyevTDMMqkALfD~Lk~rF~gr-I~itrv~aDIslakrs~~~n~~k~~~ 80 (219)
T d1t0hb_ 22 PVVLVG---PSLKGYEVTDMMQKALFDFLKHRFEGR-ISITRVTADISLAKRSVLNNPSKHAI 80 (219)
T ss_dssp CEEEEC---SSCTTSHHHHHHHHHHHHHHHHHTTTS-EEEEEECSCGGGCC----------CC
T ss_pred ceEEEC---CCcccccHHHHHHHHHHHHHHHhcCCc-eEEEEEecchhHhhhccccCchhhhh
Confidence 566654 677776 467999999999999988 4443 88888877766543
No 2
>d2bcgg2 c.3.1.3 (G:400-446) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=24.68 E-value=9.1 Score=24.52 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=18.8
Q ss_pred ccchhhhHHHHHHHhhCCeEEEE
Q psy13425 196 IEHKTDTFSQIYKKLTGREVNFE 218 (224)
Q Consensus 196 ve~Kletfs~VYkkLTGKdv~Fe 218 (224)
.|.=.+-...+|+++||++..|+
T Consensus 22 FEtt~~Dv~diY~ritG~~ldl~ 44 (47)
T d2bcgg2 22 FESMTDDVKDIYFRVTGHPLVLK 44 (47)
T ss_dssp SHHHHHHHHHHHHHHHSSCCCCC
T ss_pred hHHHHHHHHHHHHHhhCCcccee
Confidence 55566777889999999998775
No 3
>d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]}
Probab=20.06 E-value=63 Score=23.12 Aligned_cols=43 Identities=21% Similarity=0.233 Sum_probs=25.8
Q ss_pred ccCCceEEEEEecCcchhhhhhhhhhhHHHhhhhcCCceEEEEe
Q psy13425 83 DLGGKKSVIVYVPMPQLKQFQKIQPRLVRELEKKFSGKHVVFIG 126 (224)
Q Consensus 83 k~~~k~vvvI~vP~p~~k~~~k~q~rLvrELEkkfsGk~Vvfia 126 (224)
+|.||.+|+.+.|.-.-.. =..|..-.+++-.+|.|..|+.|.
T Consensus 39 d~~Gk~vVL~f~p~~~tp~-C~~e~~~~~~~~~~~~~~~vi~iS 81 (164)
T d1q98a_ 39 DFASKRKVLNIFPSIDTGV-CATSVRKFNQQAAKLSNTIVLCIS 81 (164)
T ss_dssp GGTTSEEEEEECSCSCSSC-CCHHHHHHHHHHHHSTTEEEEEEE
T ss_pred hhCCcEEEEEecCccccCc-ccHHHHHHHHHHHHhccceEEeec
Confidence 5678888888877642221 123444444555567787777775
No 4
>d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]}
Probab=19.50 E-value=49 Score=25.60 Aligned_cols=72 Identities=18% Similarity=0.167 Sum_probs=47.2
Q ss_pred hccCCceEEEEE-------ecCc--chhhhhhhhhhhHHHhhhhcCCceEEEEeeeeeccCCCCcccccCcccccCCcch
Q psy13425 82 IDLGGKKSVIVY-------VPMP--QLKQFQKIQPRLVRELEKKFSGKHVVFIGDRKILPKPTRKTRAKTKQKRPRSRTL 152 (224)
Q Consensus 82 kk~~~k~vvvI~-------vP~p--~~k~~~k~q~rLvrELEkkfsGk~Vvfiaqrrilpkp~r~~r~~~~q~rprsrtl 152 (224)
+++.|++++|-+ =|++ +..+.-+.=..|.+|+-. .|..|.+|....-++.|.-- +.=+-.|.
T Consensus 2 ~dl~g~~vlITaG~T~E~ID~VR~ItN~SSGk~G~aiA~~~~~--~Ga~V~li~g~~~~~~p~~~-------~~~~~~t~ 72 (223)
T d1u7za_ 2 NDLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAAR--RGANVTLVSGPVSLPTPPFV-------KRVDVMTA 72 (223)
T ss_dssp CTTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHH--TTCEEEEEECSCCCCCCTTE-------EEEECCSH
T ss_pred cccCCCEEEEECCCCcccCCCcceeccCCcHHHHHHHHHHHHH--cCCchhhhhcccccCccccc-------ccceehhh
Confidence 478899999998 3444 555566777788888844 49999999886655555321 11123466
Q ss_pred hhhhHHhhhh
Q psy13425 153 TSVYDCILED 162 (224)
Q Consensus 153 t~v~~aILeD 162 (224)
...++++++-
T Consensus 73 ~~m~~~~~~~ 82 (223)
T d1u7za_ 73 LEMEAAVNAS 82 (223)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 6677776643
No 5
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=18.54 E-value=89 Score=22.03 Aligned_cols=50 Identities=8% Similarity=0.240 Sum_probs=39.6
Q ss_pred cCCceEEEEEecCcchhhhhhhhhhhHHHhhhhcCCceEEEEeeeeeccC
Q psy13425 84 LGGKKSVIVYVPMPQLKQFQKIQPRLVRELEKKFSGKHVVFIGDRKILPK 133 (224)
Q Consensus 84 ~~~k~vvvI~vP~p~~k~~~k~q~rLvrELEkkfsGk~Vvfiaqrrilpk 133 (224)
+.+-+++++..-.....+|+....+....++..-.+.++++|+...=++.
T Consensus 71 ~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~ 120 (179)
T d1m7ba_ 71 YPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 120 (179)
T ss_dssp CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGG
T ss_pred hhhhhhhheeeecccCCCHHHHHHHHHHHHhccCCcceEEEEEecccccc
Confidence 44557777777777888899888888888888888999999998765543
No 6
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.88 E-value=97 Score=21.62 Aligned_cols=51 Identities=8% Similarity=0.254 Sum_probs=39.3
Q ss_pred cCCceEEEEEecCcchhhhhhhhhhhHHHhhhhcCCceEEEEeeeeeccCC
Q psy13425 84 LGGKKSVIVYVPMPQLKQFQKIQPRLVRELEKKFSGKHVVFIGDRKILPKP 134 (224)
Q Consensus 84 ~~~k~vvvI~vP~p~~k~~~k~q~rLvrELEkkfsGk~Vvfiaqrrilpkp 134 (224)
+.+-+++++..-.....+|.....+...+++..-++..+++|+...-++.+
T Consensus 74 ~~~~~~~ilv~d~~~~~sf~~i~~~~~~~~~~~~~~~piilvgnK~Dl~~~ 124 (183)
T d1mh1a_ 74 YPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 124 (183)
T ss_dssp CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTC
T ss_pred ccccceeeeeeccchHHHHHHHHHHHHHHHHHhCCCCcEEEEeecccchhh
Confidence 445677777777778888888888888888888778899999987666544
No 7
>d1hh2p3 d.52.3.1 (P:277-344) Transcription factor NusA, C-terminal domains {Thermotoga maritima [TaxId: 2336]}
Probab=16.39 E-value=1.4e+02 Score=19.45 Aligned_cols=58 Identities=17% Similarity=0.252 Sum_probs=38.3
Q ss_pred hhhhhcccceeeeeeEEEeeCCeEEEEEEecccccccccchhhhHHHHHHHhhCCeEEEE
Q psy13425 159 ILEDIVFPAEIVGKRIKVKLDGKQLIKVHLDKNQQTNIEHKTDTFSQIYKKLTGREVNFE 218 (224)
Q Consensus 159 ILeDLV~PseIVGKRir~~lDGskl~KV~LD~~d~~~ve~Kletfs~VYkkLTGKdv~Fe 218 (224)
.+...++|+++++-.+. -...+.+.|.+++.|....=-|--.=...-.+|||.+..++
T Consensus 6 fI~nAL~PA~v~~V~i~--de~~~~~~v~V~~~qls~AIGk~G~NvrLas~Ltg~~idI~ 63 (68)
T d1hh2p3 6 LIANALAPATVIEVEIL--DKENKAARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIK 63 (68)
T ss_dssp HHHHHTCSSCCSEEEEE--ETTTTEEEEEECTTSHHHHHCGGGHHHHHHHHHHSCEEEEE
T ss_pred HHHHhCCCCeeeEEEEE--cCCCCEEEEEECcccccccccCCcchHHHHHHHHCCEEeeE
Confidence 34556799999888763 23446788889887765443333333344678999888765
No 8
>d1nm3a2 c.47.1.10 (A:3-165) N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}
Probab=14.83 E-value=1.1e+02 Score=21.72 Aligned_cols=23 Identities=13% Similarity=0.133 Sum_probs=15.9
Q ss_pred eeeeeEEEeeCCeEEEEEEeccc
Q psy13425 169 IVGKRIKVKLDGKQLIKVHLDKN 191 (224)
Q Consensus 169 IVGKRir~~lDGskl~KV~LD~~ 191 (224)
...+|..+-.|...+.++++++.
T Consensus 120 ~~s~R~~~IiddG~I~~~~v~~~ 142 (163)
T d1nm3a2 120 KRSWRYSMLVKNGVVEKMFIEPN 142 (163)
T ss_dssp EEECCEEEEEETTEEEEEEECCS
T ss_pred cccceEEEEEeCCEEEEEEEecC
Confidence 45677666556558888998754
No 9
>d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli [TaxId: 562]}
Probab=14.67 E-value=1e+02 Score=21.84 Aligned_cols=44 Identities=18% Similarity=0.222 Sum_probs=24.6
Q ss_pred hccCCceEEEEEecCcchhhhhhhhhhhHHHhhhhcCCceEEEEe
Q psy13425 82 IDLGGKKSVIVYVPMPQLKQFQKIQPRLVRELEKKFSGKHVVFIG 126 (224)
Q Consensus 82 kk~~~k~vvvI~vP~p~~k~~~k~q~rLvrELEkkfsGk~Vvfia 126 (224)
.+|.||.+|+++.|...-.. =..|..-++++-.++.|-.|+.|+
T Consensus 40 sd~~GK~vvl~f~~~~~~p~-C~~~~~~l~~~~~~~~~~~vv~Is 83 (164)
T d1qxha_ 40 GQFAGKRKVLNIFPSIDTGV-CAASVRKFNQLATEIDNTVVLCIS 83 (164)
T ss_dssp GGGTTSEEEEEECSCSCSSC-CCHHHHHHHHHHHTSTTEEEEEEE
T ss_pred HHhCCCeEEEEEecchhccc-chHHHHHHHHHHHhhccceeeeEE
Confidence 35779988888876531110 012333334455567777666665
No 10
>d2qqra2 b.34.9.1 (A:956-1011) Jumonji domain-containing protein 2A {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.66 E-value=65 Score=20.92 Aligned_cols=25 Identities=28% Similarity=0.329 Sum_probs=18.4
Q ss_pred hhhhcccceeeeeeEEE-----eeCCeEEE
Q psy13425 160 LEDIVFPAEIVGKRIKV-----KLDGKQLI 184 (224)
Q Consensus 160 LeDLV~PseIVGKRir~-----~lDGskl~ 184 (224)
-+-++|+|..+|.++.. .-|||++.
T Consensus 13 ~DG~~y~A~f~~~~~~~~YqVeFEDgSql~ 42 (56)
T d2qqra2 13 TDGQVYGAKFVASHPIQMYQVEFEDGSQLV 42 (56)
T ss_dssp TTSCEEEEEEEEEEEEEEEEEEETTSCEEE
T ss_pred CCCCEEEEEEEecceeEEEEEEEcCCcEEE
Confidence 45689999999999854 45666553
Done!