RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13425
(224 letters)
>3u5c_H RP30, RP40, 40S ribosomal protein S7-A; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3u5g_H
Length = 190
Score = 229 bits (585), Expect = 4e-77
Identities = 90/222 (40%), Positives = 132/222 (59%), Gaps = 36/222 (16%)
Query: 1 MFLANSKIIKKGGEPDAFENSISQALLELEMNS-DLKAQLRELYITRAKEIDLGGKKSVI 59
M +KI+ + P E ++QA +ELE +S +LKA+LR L +EID+ G
Sbjct: 1 MSAPQAKILSQ--APTELELQVAQAFVELENSSPELKAELRPLQFKSIREIDVAG----- 53
Query: 60 VYVPMPQLKQFQKIQPRLVPKEIDLGGKKSVIVYVPMPQLKQFQKIQPRLVRELEKKFSG 119
GKK++ ++VP+P L F K+Q +L RELEKKF
Sbjct: 54 --------------------------GKKALAIFVPVPSLAGFHKVQTKLTRELEKKFQD 87
Query: 120 KHVVFIGDRKILPKPTRKTRAKTKQKRPRSRTLTSVYDCILEDIVFPAEIVGKRIKVKLD 179
+HV+F+ +R+ILPKP+R + + QKRPRSRTLT+V+D ILED+VFP EIVGKR++ +
Sbjct: 88 RHVIFLAERRILPKPSRTS--RQVQKRPRSRTLTAVHDKILEDLVFPTEIVGKRVRYLVG 145
Query: 180 GKQLIKVHLDKNQQTNIEHKTDTFSQIYKKLTGREVNFEFPE 221
G ++ KV LD I++K ++F +Y KLTG+++ FE P
Sbjct: 146 GNKIQKVLLDSKDVQQIDYKLESFQAVYNKLTGKQIVFEIPS 187
>2xzm_3 RPS7E, 40S ribosomal protein RPS7E; ribosome, translation; 3.93A
{Tetrahymena thermophila} PDB: 2xzn_3
Length = 197
Score = 222 bits (568), Expect = 2e-74
Identities = 69/220 (31%), Positives = 106/220 (48%), Gaps = 33/220 (15%)
Query: 3 LANSKIIKKGGEPDAFENSISQALLELE-MNSDLKAQLRELYITRAKEIDLGGKKSVIVY 61
+A +K K E + AL+EL+ + DLK L + +T+ KE +
Sbjct: 1 MALAKFHK-KQSLTKIEEQVGSALVELQNTHPDLKTSLESIILTQVKEFQINKTNK---- 55
Query: 62 VPMPQLKQFQKIQPRLVPKEIDLGGKKSVIVYVPMPQLKQFQKIQPRLVRELEKKFSGKH 121
K +V++YV + +L+ ELEKK +
Sbjct: 56 -----------------------KAKSAVLIYVHFQSYRVLLSAARKLIIELEKKLK-QI 91
Query: 122 VVFIGDRKILPKPTRKTRAKTKQKRPRSRTLTSVYDCILEDIVFPAEIVGKRIKVKLDGK 181
V F RKI K ++ + Q+RPRSR LT VYD +L+D++ P+ ++GKRI+ +LDG
Sbjct: 92 VFFTAQRKIESKWVKEHK---SQQRPRSRCLTYVYDALLDDLLLPSTLIGKRIRARLDGT 148
Query: 182 QLIKVHLDKNQQTNIEHKTDTFSQIYKKLTGREVNFEFPE 221
++ LD+N + +E K D + IYK +T REV FEF E
Sbjct: 149 SFYRIQLDQNDRDFLEEKLDAITHIYKTVTTREVTFEFKE 188
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.7 bits (100), Expect = 6e-05
Identities = 38/256 (14%), Positives = 75/256 (29%), Gaps = 91/256 (35%)
Query: 8 IIKKGGEPDAFENSISQALLELEMNSDLKAQLRELYITRAKEIDLGGKKSVIVYVPMPQL 67
I + ++F S+ +A+ L +I G + Y P
Sbjct: 282 AIAETDSWESFFVSVRKAITVL------------FFI---------GVRCYEAY---PNT 317
Query: 68 KQFQKIQPRLVPKEIDLG-GKKSVIVYVPM-----PQLKQFQKIQPRLVRELEKKF-SGK 120
+ P ++ ++ G S PM +Q Q V + +GK
Sbjct: 318 S----LPPSILEDSLENNEGVPS-----PMLSISNLTQEQVQD----YVNKTNSHLPAGK 364
Query: 121 HV---VFIGDRKI-----------LPKPTRKTRAKTK---------QKRPR--------- 148
V + G + + L RK +A + +++ +
Sbjct: 365 QVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVA 424
Query: 149 ----SRTLTSVYDCILEDIVFPAEIVGKRIKVKLDGKQL-IKVHLDKNQQTNI-EHKTDT 202
S L D I +D+ + V + K + I V+ D +++
Sbjct: 425 SPFHSHLLVPASDLINKDL--------VKNNVSFNAKDIQIPVY-DTFDGSDLRVLSGSI 475
Query: 203 FSQIYKKLTGREVNFE 218
+I + V +E
Sbjct: 476 SERIVDCIIRLPVKWE 491
>2x8g_A Thioredoxin glutathione reductase; redox-active center,
detoxification pathway, oxidoreductase, flavoprotein;
HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A*
2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*
Length = 598
Score = 30.0 bits (68), Expect = 0.57
Identities = 6/25 (24%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Query: 174 IKVKLDGKQLIKVHLDKNQQTNIEH 198
+ VKLD + ++QT + +
Sbjct: 405 VGVKLDKNGRVVC--TDDEQTTVSN 427
>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide,
acetylation, alternative initiation, cytoplasm, FAD,
flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A
{Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A*
1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A*
3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A*
1xan_A* 5grt_A* ...
Length = 478
Score = 30.2 bits (69), Expect = 0.62
Identities = 8/23 (34%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
Query: 176 VKLDGKQLIKVHLDKNQQTNIEH 198
++ D K I V D+ Q TN++
Sbjct: 305 IQTDDKGHIIV--DEFQNTNVKG 325
>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping
sickness, flavoPro redox-active center; HET: FAD WPF;
1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A*
2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A*
1bzl_A* 1aog_A*
Length = 495
Score = 29.8 bits (68), Expect = 0.63
Identities = 8/25 (32%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 174 IKVKLDGKQLIKVHLDKNQQTNIEH 198
+ VKL K ++V D+ +TN+ +
Sbjct: 302 VGVKLTPKGGVQV--DEFSRTNVPN 324
>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed
with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A
{Saccharomyces cerevisiae}
Length = 479
Score = 29.8 bits (68), Expect = 0.71
Identities = 7/23 (30%), Positives = 12/23 (52%), Gaps = 2/23 (8%)
Query: 176 VKLDGKQLIKVHLDKNQQTNIEH 198
+KL+ I D+ Q TN+ +
Sbjct: 296 IKLNSHDQIIA--DEYQNTNVPN 316
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity,
oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile}
PDB: 2rab_A*
Length = 463
Score = 29.8 bits (68), Expect = 0.82
Identities = 4/23 (17%), Positives = 10/23 (43%), Gaps = 2/23 (8%)
Query: 176 VKLDGKQLIKVHLDKNQQTNIEH 198
+++ ++ D Q TN+
Sbjct: 276 IEVQSNGMVPT--DAYQNTNVPG 296
>1fec_A Trypanothione reductase; redox-active center, oxidoreductase,
flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia
fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A*
1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A*
2x50_A* 2ve2_A*
Length = 490
Score = 29.4 bits (67), Expect = 0.84
Identities = 7/23 (30%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
Query: 176 VKLDGKQLIKVHLDKNQQTNIEH 198
V++ IKV D +TN+++
Sbjct: 300 VEVAKNGAIKV--DAYSKTNVDN 320
>4dna_A Probable glutathione reductase; structural genomics, protein
structure initiative, NEW YORK structural genomix
research consortium; HET: FAD; 2.80A {Sinorhizobium
meliloti}
Length = 463
Score = 29.4 bits (67), Expect = 0.91
Identities = 5/23 (21%), Positives = 9/23 (39%), Gaps = 2/23 (8%)
Query: 176 VKLDGKQLIKVHLDKNQQTNIEH 198
V+ + I V D +T+
Sbjct: 280 VRTNELGAIIV--DAFSRTSTPG 300
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle
structural genomics center for infectious gluathione
reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella
henselae}
Length = 484
Score = 29.4 bits (67), Expect = 1.0
Identities = 7/23 (30%), Positives = 12/23 (52%), Gaps = 2/23 (8%)
Query: 176 VKLDGKQLIKVHLDKNQQTNIEH 198
VK++ + V D+ TN+ H
Sbjct: 300 VKVNEFGAVVV--DEKMTTNVSH 320
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A
{Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB:
1geu_A* 1ger_A* 1get_A*
Length = 450
Score = 29.0 bits (66), Expect = 1.4
Identities = 12/23 (52%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
Query: 176 VKLDGKQLIKVHLDKNQQTNIEH 198
VK + K I V DK Q TNIE
Sbjct: 277 VKTNEKGYIVV--DKYQNTNIEG 297
>3bzw_A Putative lipase; protein structure initiative II, (PSI-II),
NYSGXRC, structural genomics; 1.87A {Bacteroides
thetaiotaomicron vpi-5482} SCOP: c.23.10.9
Length = 274
Score = 27.1 bits (59), Expect = 4.5
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 113 LEKKFSGKHVVFIGD 127
++ + GK V +IGD
Sbjct: 20 IQHPWQGKKVGYIGD 34
>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein,
FAD, mitochondrion, redox-active center, selenium,
selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus
musculus} PDB: 1zkq_A* 1zdl_A*
Length = 488
Score = 27.1 bits (61), Expect = 4.6
Identities = 7/26 (26%), Positives = 12/26 (46%), Gaps = 3/26 (11%)
Query: 174 IKVKLDGK-QLIKVHLDKNQQTNIEH 198
+ + K Q I V D + T++ H
Sbjct: 297 AGISTNPKNQKIIV--DAQEATSVPH 320
>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha
polypeptide; C2 domain, lipid binding, PI3-kinase,
transferase; 2.30A {Mus musculus}
Length = 134
Score = 26.5 bits (59), Expect = 5.1
Identities = 8/49 (16%), Positives = 21/49 (42%), Gaps = 4/49 (8%)
Query: 129 KILPKPTRKTRAKTKQKRPRSRTLTSVYDCILE-DIVFPAEIVGKRIKV 176
+LP + ++ KTK R +T ++ +L + + +++
Sbjct: 47 YLLPDTHKTSKRKTKISR---KTRNPTFNEMLVYSGYSKETLRQRELQL 92
>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex,
rossmann fold, HO pyridine nucleotide disulfide
oxidoreductase, electron TRAN oxidoreductase; HET: FAD;
2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A*
2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*
Length = 519
Score = 27.2 bits (61), Expect = 5.7
Identities = 8/24 (33%), Positives = 13/24 (54%), Gaps = 3/24 (12%)
Query: 176 VKLDGKQ-LIKVHLDKNQQTNIEH 198
VK++ K I V +QTN+ +
Sbjct: 327 VKINEKTGKIPV--TDEEQTNVPY 348
>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer,
neurotransmitter release, transport protein; HET: MSE;
1.73A {Rattus norvegicus}
Length = 171
Score = 26.3 bits (58), Expect = 7.4
Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 6/48 (12%)
Query: 129 KILPKPTRKTRAKTKQKRPRSRTLTSVYDCILEDIVFPAEIVGKRIKV 176
+L + KT+ R +TL +Y + +VF GK ++V
Sbjct: 59 YLLENGACIAKKKTRIAR---KTLDPLYQ---QSLVFDESPQGKVLQV 100
>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase,
NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria
meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB:
1bhy_A*
Length = 482
Score = 26.3 bits (59), Expect = 8.7
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 6/32 (18%)
Query: 167 AEIVGKRIKVKLDGKQLIKVHLDKNQQTNIEH 198
AE G V + + I+V DK +TN+ H
Sbjct: 293 AEKAG----VAVTDRGFIEV--DKQMRTNVPH 318
>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center,
glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus
stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 455
Score = 26.3 bits (59), Expect = 8.9
Identities = 8/32 (25%), Positives = 18/32 (56%), Gaps = 6/32 (18%)
Query: 167 AEIVGKRIKVKLDGKQLIKVHLDKNQQTNIEH 198
E +G +K+ + LI+V D+ +T++ +
Sbjct: 277 LEQIG----IKMTNRGLIEV--DQQCRTSVPN 302
>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate
dehydrogenase, alpha- ketoglutarate dehydrogenase; HET:
FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A*
1zy8_A* 3rnm_A*
Length = 474
Score = 26.3 bits (59), Expect = 9.1
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 6/32 (18%)
Query: 167 AEIVGKRIKVKLDGKQLIKVHLDKNQQTNIEH 198
E +G ++LD + I V + QT I +
Sbjct: 289 LEELG----IELDPRGRIPV--NTRFQTKIPN 314
>3pet_A Putative adhesin; right-handed beta-helix, structural genomics,
joint center F structural genomics, JCSG; HET: PG4;
2.07A {Bacteroides fragilis nctc 9343}
Length = 221
Score = 26.1 bits (57), Expect = 9.7
Identities = 5/31 (16%), Positives = 12/31 (38%)
Query: 41 ELYITRAKEIDLGGKKSVIVYVPMPQLKQFQ 71
L+++ K + K + + + P L
Sbjct: 64 TLFLSIDKSKKVRNFKKMKITITSPTLNGIS 94
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly,
membrane coat, nucleocytoplasmic transport,
beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB:
3h7n_A 3hxr_A
Length = 729
Score = 26.3 bits (57), Expect = 9.8
Identities = 5/30 (16%), Positives = 9/30 (30%)
Query: 193 QTNIEHKTDTFSQIYKKLTGREVNFEFPEP 222
+ TF + G+ +N P
Sbjct: 71 HFSSRSTLLTFYPLSDAYHGKTINIHLPNA 100
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.138 0.383
Gapped
Lambda K H
0.267 0.0837 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,337,799
Number of extensions: 202424
Number of successful extensions: 623
Number of sequences better than 10.0: 1
Number of HSP's gapped: 616
Number of HSP's successfully gapped: 43
Length of query: 224
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 134
Effective length of database: 4,188,903
Effective search space: 561313002
Effective search space used: 561313002
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (24.8 bits)