RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13425
         (224 letters)



>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain
           (RecD) {Escherichia coli [TaxId: 562]}
          Length = 359

 Score = 27.2 bits (59), Expect = 1.9
 Identities = 17/95 (17%), Positives = 32/95 (33%), Gaps = 3/95 (3%)

Query: 38  QLRELYITRAKEIDLGGKKSVIVYVPMPQLKQFQKIQPRLVPKEIDLGGKKSVIVYVPMP 97
           +L E      +++ L  ++   +      L +    QP         G    + V V   
Sbjct: 210 RLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLV--- 266

Query: 98  QLKQFQKIQPRLVRELEKKFSGKHVVFIGDRKILP 132
             +      P + R ++       V+F+GDR  L 
Sbjct: 267 VDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLA 301


>d1k28d1 b.106.1.1 (D:4-200) Baseplate structural protein gp27
           {Bacteriophage T4 [TaxId: 10665]}
          Length = 197

 Score = 25.6 bits (56), Expect = 4.5
 Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 5/36 (13%)

Query: 172 KRIKVKLDGKQLIKVHLDKNQQTNIEHKTDTFSQIY 207
           K I  K+DG ++I++ +      N        ++IY
Sbjct: 55  KNIHTKMDGNEIIQISVANANDINN-----VKTRIY 85


>d1ka8a_ a.4.5.20 (A:) P4 origin-binding domain {Bacteriophage P4
           [TaxId: 10680]}
          Length = 100

 Score = 24.7 bits (54), Expect = 4.8
 Identities = 7/23 (30%), Positives = 11/23 (47%)

Query: 180 GKQLIKVHLDKNQQTNIEHKTDT 202
           G    K H  +  QTN+  K ++
Sbjct: 71  GLNYEKRHTKQGIQTNLTLKEES 93


>d2hsja1 c.23.10.3 (A:1-211) Uncharacterized protein SP1450
           {Streptococcus pneumoniae [TaxId: 1313]}
          Length = 211

 Score = 25.4 bits (54), Expect = 5.1
 Identities = 9/30 (30%), Positives = 15/30 (50%)

Query: 98  QLKQFQKIQPRLVRELEKKFSGKHVVFIGD 127
            LK+ +KIQ +            +++FIGD
Sbjct: 10  LLKEQEKIQTKYRHLNHISVVEPNILFIGD 39


>d2bcgg2 c.3.1.3 (G:400-446) Guanine nucleotide dissociation
           inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae)
           [TaxId: 4932]}
          Length = 47

 Score = 23.1 bits (50), Expect = 6.0
 Identities = 7/25 (28%), Positives = 13/25 (52%)

Query: 194 TNIEHKTDTFSQIYKKLTGREVNFE 218
           ++ E  TD    IY ++TG  +  +
Sbjct: 20  SHFESMTDDVKDIYFRVTGHPLVLK 44


>d3bona1 d.92.1.7 (A:3-419) Botulinum neurotoxin {Clostridium
           botulinum, serotype A [TaxId: 1491]}
          Length = 417

 Score = 25.6 bits (56), Expect = 6.2
 Identities = 8/39 (20%), Positives = 14/39 (35%)

Query: 185 KVHLDKNQQTNIEHKTDTFSQIYKKLTGREVNFEFPEPY 223
           K  L ++           F ++YK LT       F + +
Sbjct: 318 KYLLSEDTSGKFSVDKLKFDKLYKMLTEIYTEDNFVKFF 356


>d1t3ca_ d.92.1.7 (A:) Botulinum neurotoxin {Clostridium botulinum,
           serotype E [TaxId: 1491]}
          Length = 411

 Score = 25.2 bits (55), Expect = 7.1
 Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 1/39 (2%)

Query: 185 KVHLDKNQQTNIEHKTDTFSQIYKKLTGREVNFEFPEPY 223
           K  LDK+         + F+ I+KKL      F+    +
Sbjct: 305 KYGLDKDASGIYSVNINKFNDIFKKLYSF-TEFDLATKF 342


>d1epwa3 d.92.1.7 (A:1-533) Botulinum neurotoxin {Clostridium
           botulinum, serotype B [TaxId: 1491]}
          Length = 533

 Score = 24.8 bits (54), Expect = 9.0
 Identities = 7/39 (17%), Positives = 14/39 (35%)

Query: 185 KVHLDKNQQTNIEHKTDTFSQIYKKLTGREVNFEFPEPY 223
           K    ++ +       ++F ++YK L          E Y
Sbjct: 326 KYKFVEDSEGKYSIDVESFDKLYKSLMFGFTETNIAENY 364


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.138    0.383 

Gapped
Lambda     K      H
   0.267   0.0622    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 817,542
Number of extensions: 39611
Number of successful extensions: 102
Number of sequences better than 10.0: 1
Number of HSP's gapped: 102
Number of HSP's successfully gapped: 15
Length of query: 224
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 142
Effective length of database: 1,281,736
Effective search space: 182006512
Effective search space used: 182006512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.7 bits)