BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13427
(268 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q924T2|RT02_MOUSE 28S ribosomal protein S2, mitochondrial OS=Mus musculus GN=Mrps2
PE=2 SV=1
Length = 291
Score = 249 bits (635), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 117/221 (52%), Positives = 159/221 (71%)
Query: 33 PLPSTSNTESKDTSQEPEVPNPLRYHDYFQVRNLVKVKDMFDAKVHLGHKIGSLDERMKP 92
P+P+ S + D Q + PL++ D+F V+ L VK +F+A+VHLGHK G M+P
Sbjct: 42 PVPAVSEPQDGDDFQSRILDTPLQHSDFFNVKELFSVKSLFEARVHLGHKAGCRHRFMEP 101
Query: 93 YIYGVRQGQIIFDLDQSAELLRDALNFVAHIAYRDGIVLFVGQSAQNSLLIEKTAQDCQE 152
YI+G R GQ I DLDQ+A L+ ALNF AH+AYR GI+LFV ++ Q S LIE TAQ C E
Sbjct: 102 YIFGNRLGQDIIDLDQTALNLQLALNFTAHVAYRKGIILFVSRNRQFSHLIETTAQACGE 161
Query: 153 FAHTRFWRQGMFTNSEKLFRAVTRLPDLVILTNTLTTVLEPNPAIGEAAKMCIPTVGIVD 212
+AHTR+++ G+ TN++ LF RLPDL+I +TL V EP+ A+ +AAKM IPTVGIVD
Sbjct: 162 YAHTRYFKGGLLTNAQLLFGPSVRLPDLIIFLHTLNNVFEPHVAVRDAAKMNIPTVGIVD 221
Query: 213 SNCNPNLITYPVPGNDDTPSAIQYYCQVFKTAILKGKKAKQ 253
+NCNP LITYP+PGNDD+P AIQ +C++F+T I + K+ ++
Sbjct: 222 TNCNPCLITYPIPGNDDSPQAIQLFCKLFRTTINRAKEKRR 262
>sp|Q9Y399|RT02_HUMAN 28S ribosomal protein S2, mitochondrial OS=Homo sapiens GN=MRPS2
PE=1 SV=1
Length = 296
Score = 243 bits (620), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 113/215 (52%), Positives = 155/215 (72%), Gaps = 2/215 (0%)
Query: 41 ESKDTS--QEPEVPNPLRYHDYFQVRNLVKVKDMFDAKVHLGHKIGSLDERMKPYIYGVR 98
ES+D++ + + PL++ D+F V+ L V+ +FDA+VHLGHK G M+PYI+G R
Sbjct: 51 ESEDSTDFNDKILNEPLKHSDFFNVKELFSVRSLFDARVHLGHKAGCRHRFMEPYIFGSR 110
Query: 99 QGQIIFDLDQSAELLRDALNFVAHIAYRDGIVLFVGQSAQNSLLIEKTAQDCQEFAHTRF 158
I DL+Q+A L+ ALNF AH+AYR GI+LF+ ++ Q S LIE A+DC E+AHTR+
Sbjct: 111 LDHDIIDLEQTATHLQLALNFTAHMAYRKGIILFISRNRQFSYLIENMARDCGEYAHTRY 170
Query: 159 WRQGMFTNSEKLFRAVTRLPDLVILTNTLTTVLEPNPAIGEAAKMCIPTVGIVDSNCNPN 218
+R GM TN+ LF RLPDL+I +TL + EP+ A+ +AAKM IPTVGIVD+NCNP
Sbjct: 171 FRGGMLTNARLLFGPTVRLPDLIIFLHTLNNIFEPHVAVRDAAKMNIPTVGIVDTNCNPC 230
Query: 219 LITYPVPGNDDTPSAIQYYCQVFKTAILKGKKAKQ 253
LITYPVPGNDD+P A+ YC++F+TAI + K+ +Q
Sbjct: 231 LITYPVPGNDDSPLAVHLYCRLFQTAITRAKEKRQ 265
>sp|P82923|RT02_BOVIN 28S ribosomal protein S2, mitochondrial OS=Bos taurus GN=MRPS2 PE=1
SV=2
Length = 293
Score = 243 bits (619), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 108/200 (54%), Positives = 150/200 (75%)
Query: 54 PLRYHDYFQVRNLVKVKDMFDAKVHLGHKIGSLDERMKPYIYGVRQGQIIFDLDQSAELL 113
PL++ D+F V+ L V+ +F+A+VHLGHK G M+PYI+G R GQ I DL+Q+A L
Sbjct: 55 PLKHSDFFNVKELFSVRSLFNARVHLGHKAGCRHRFMEPYIFGSRLGQDIIDLEQTATHL 114
Query: 114 RDALNFVAHIAYRDGIVLFVGQSAQNSLLIEKTAQDCQEFAHTRFWRQGMFTNSEKLFRA 173
+ ALNF AH+A+R GI+LFV ++ Q S LIE TA+ C E+AHTR+++ G+ TN+ L A
Sbjct: 115 QLALNFTAHVAFRGGIILFVSRARQFSHLIESTARSCGEYAHTRYFKGGLLTNAPLLLGA 174
Query: 174 VTRLPDLVILTNTLTTVLEPNPAIGEAAKMCIPTVGIVDSNCNPNLITYPVPGNDDTPSA 233
RLPDL+I +TL V EP+ A+ +AAKM IPTVG+VD+NCNP LITYPVPGNDD+P A
Sbjct: 175 RVRLPDLIIFLHTLNNVFEPHVAVRDAAKMSIPTVGVVDTNCNPCLITYPVPGNDDSPPA 234
Query: 234 IQYYCQVFKTAILKGKKAKQ 253
+Q +CQ+F+TA+ + K+ ++
Sbjct: 235 VQLFCQLFQTAVTRAKEKRR 254
>sp|Q1RH01|RS2_RICBR 30S ribosomal protein S2 OS=Rickettsia bellii (strain RML369-C)
GN=rpsB PE=3 SV=1
Length = 291
Score = 130 bits (328), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 75/226 (33%), Positives = 108/226 (47%), Gaps = 48/226 (21%)
Query: 67 VKVKDMFDAKVHLGHKIGSLDERMKPYIYGVRQGQIIFDLDQSAELLRDALNFVAHIAYR 126
V VKD+ DA VH GHK + +M PYIYG R I DL Q+A L+ ALN +
Sbjct: 7 VNVKDLLDAGVHFGHKTSRWNPKMAPYIYGERDEVHIIDLRQTAALMNVALNAIYETVKN 66
Query: 127 DGIVLFVGQSAQNSLLIEKTAQDCQEFAHTRFWRQGMFTNSEKLFRAVTRL--------- 177
DG VLFV Q S +I + A+ C ++ W GM TN + + ++ +L
Sbjct: 67 DGKVLFVSTKIQASDIIAEYAEKCGQYYVNHRWLGGMLTNWKTISGSIEKLNKLEQTLEN 126
Query: 178 -----------------------------------PDLVILTNTLTTVLEPNPAIGEAAK 202
PDL+++ +T + + AI EA +
Sbjct: 127 EEACIGYTKKEILDMNRKKDKLLLSLAGIRELHSKPDLIVIIDT----NKEHIAISEAVR 182
Query: 203 MCIPTVGIVDSNCNPNLITYPVPGNDDTPSAIQYYCQVFKTAILKG 248
+ IP V +VD+N NP+ I YP+PGNDD +I++YC +F A L+G
Sbjct: 183 LDIPIVAVVDTNSNPDHIDYPIPGNDDAIRSIRFYCSLFADAALQG 228
>sp|A8GUK1|RS2_RICB8 30S ribosomal protein S2 OS=Rickettsia bellii (strain OSU 85-389)
GN=rpsB PE=3 SV=1
Length = 291
Score = 130 bits (328), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 75/226 (33%), Positives = 108/226 (47%), Gaps = 48/226 (21%)
Query: 67 VKVKDMFDAKVHLGHKIGSLDERMKPYIYGVRQGQIIFDLDQSAELLRDALNFVAHIAYR 126
V VKD+ DA VH GHK + +M PYIYG R I DL Q+A L+ ALN +
Sbjct: 7 VNVKDLLDAGVHFGHKTSRWNPKMAPYIYGERDEVHIIDLRQTAALMNVALNAIYETVKN 66
Query: 127 DGIVLFVGQSAQNSLLIEKTAQDCQEFAHTRFWRQGMFTNSEKLFRAVTRL--------- 177
DG VLFV Q S +I + A+ C ++ W GM TN + + ++ +L
Sbjct: 67 DGKVLFVSTKIQASDIIAEYAEKCGQYYVNHRWLGGMLTNWKTISGSIEKLNKLEQTLEN 126
Query: 178 -----------------------------------PDLVILTNTLTTVLEPNPAIGEAAK 202
PDL+++ +T + + AI EA +
Sbjct: 127 EEACIGYTKKEILDMNRKKDKLLLSLAGIRELHSKPDLIVIIDT----NKEHIAISEAVR 182
Query: 203 MCIPTVGIVDSNCNPNLITYPVPGNDDTPSAIQYYCQVFKTAILKG 248
+ IP V +VD+N NP+ I YP+PGNDD +I++YC +F A L+G
Sbjct: 183 LDIPIVAVVDTNSNPDHIDYPIPGNDDAIRSIRFYCSLFADAALQG 228
>sp|A8GM32|RS2_RICAH 30S ribosomal protein S2 OS=Rickettsia akari (strain Hartford)
GN=rpsB PE=3 SV=1
Length = 295
Score = 127 bits (319), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 75/226 (33%), Positives = 108/226 (47%), Gaps = 48/226 (21%)
Query: 67 VKVKDMFDAKVHLGHKIGSLDERMKPYIYGVRQGQIIFDLDQSAELLRDALNFVAHIAYR 126
V +K++ DA VH GHK + +M YIYG R I DL QSA L+ ALN + +
Sbjct: 7 VNIKELLDAGVHFGHKTSRWNPKMASYIYGERDDVHIIDLRQSAALMSVALNAIYETVKK 66
Query: 127 DGIVLFVGQSAQNSLLIEKTAQDCQEFAHTRFWRQGMFTN-------------------- 166
DG VLFV Q S +I + A+ C ++ W GM TN
Sbjct: 67 DGKVLFVSTKIQASDIIAEYAEKCGQYYVNHRWLGGMLTNWKTIAGSIEKLNKLEKTLEN 126
Query: 167 ------------------SEKLF------RAVTRLPDLVILTNTLTTVLEPNPAIGEAAK 202
EKL R + PDL+++ +T + + AI EA K
Sbjct: 127 AEALIGYTKKEILDMSRKKEKLLLSLAGIRNLNSKPDLLVVIDT----NKEHIAINEAVK 182
Query: 203 MCIPTVGIVDSNCNPNLITYPVPGNDDTPSAIQYYCQVFKTAILKG 248
+ +P V +VD+N NP+ + YP+PGNDD+ +I+ YC++F A L+G
Sbjct: 183 LNVPIVAVVDTNSNPDNVDYPIPGNDDSIRSIRLYCRLFADAALQG 228
>sp|Q4UND8|RS2_RICFE 30S ribosomal protein S2 OS=Rickettsia felis (strain ATCC VR-1525 /
URRWXCal2) GN=rpsB PE=3 SV=1
Length = 295
Score = 126 bits (317), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 74/226 (32%), Positives = 107/226 (47%), Gaps = 48/226 (21%)
Query: 67 VKVKDMFDAKVHLGHKIGSLDERMKPYIYGVRQGQIIFDLDQSAELLRDALNFVAHIAYR 126
V +K++ DA VH GHK + +M YIYG R I DL QSA L+ ALN + +
Sbjct: 7 VNIKELLDAGVHFGHKTSRWNPKMASYIYGERDDVHIIDLRQSAALMSVALNTIYETVKK 66
Query: 127 DGIVLFVGQSAQNSLLIEKTAQDCQEFAHTRFWRQGMFTN-------------------- 166
DG +LFV Q S +I + A+ C ++ W GM TN
Sbjct: 67 DGKILFVSTKIQASDIIAEYAEKCGQYYVNHRWLGGMLTNWKTIAGSIEKLNKLEKTLEN 126
Query: 167 ------------------SEKLF------RAVTRLPDLVILTNTLTTVLEPNPAIGEAAK 202
EKL R + PDL+++ +T + + AI EA K
Sbjct: 127 EEALMGYTKKEILDMSRKKEKLLLSLAGIRNLNSKPDLLVVIDT----NKEHIAINEAVK 182
Query: 203 MCIPTVGIVDSNCNPNLITYPVPGNDDTPSAIQYYCQVFKTAILKG 248
+ +P V +VD+N NP+ + YP+PGNDD+ +I+ YC +F A L+G
Sbjct: 183 LNVPIVAVVDTNSNPDNVNYPIPGNDDSIRSIRLYCSLFADAALQG 228
>sp|Q68XV5|RS2_RICTY 30S ribosomal protein S2 OS=Rickettsia typhi (strain ATCC VR-144 /
Wilmington) GN=rpsB PE=3 SV=1
Length = 295
Score = 126 bits (317), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 77/222 (34%), Positives = 111/222 (50%), Gaps = 40/222 (18%)
Query: 67 VKVKDMFDAKVHLGHKIGSLDERMKPYIYGVRQGQIIFDLDQSAELLRDALNFVAHIAYR 126
+ +K++ DA VH GHK + +M YIYG R I DL QSA L+ ALN + +
Sbjct: 7 INIKELLDAGVHFGHKTSRWNPKMASYIYGERDDVHIIDLRQSAALMSVALNAIYETVKK 66
Query: 127 DGIVLFVGQSAQNSLLIEKTAQDCQEFAHTRFWRQGMFTNS----------EKLFRA--- 173
DG +LFV Q S +I + A+ C ++ W GM TN EKL +
Sbjct: 67 DGKILFVSTKIQASDIIAEYAEKCGQYYVNNRWLGGMLTNWKTIACSIEKLEKLEKTLES 126
Query: 174 --------------VTRLPDLVILT-------NT---LTTVLEPNP---AIGEAAKMCIP 206
++R D ++L+ N+ L V++ N AI EA K+ IP
Sbjct: 127 EETRVCYTKKEILDMSRKKDKLLLSLAGIRNLNSKPDLLVVIDTNKEHIAINEAVKLNIP 186
Query: 207 TVGIVDSNCNPNLITYPVPGNDDTPSAIQYYCQVFKTAILKG 248
V +VD+N NP+ I YP+PGNDD+ +I+ YC +F A L+G
Sbjct: 187 IVAVVDTNSNPDNINYPIPGNDDSIRSIRLYCSLFADAALQG 228
>sp|O67809|RS2_AQUAE 30S ribosomal protein S2 OS=Aquifex aeolicus (strain VF5) GN=rpsB
PE=3 SV=1
Length = 274
Score = 125 bits (314), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 72/241 (29%), Positives = 117/241 (48%), Gaps = 47/241 (19%)
Query: 66 LVKVKDMFDAKVHLGHKIGSLDERMKPYIYGVRQGQIIFDLDQSAELLRDALNFVAHIAY 125
+V +K++ +A VH GH + +M PYIYGVR G I DL+++ +L DA +FV+ +
Sbjct: 3 VVSMKELLEAGVHFGHSKSRWNPKMAPYIYGVRHGIHIIDLNKTIVMLEDAYHFVSDVIA 62
Query: 126 RDGIVLFVGQSAQNSLLIEKTAQDCQEFAHTRFWRQGMFTN------------------- 166
+ G +LFVG Q +I++ A+ C F W G+ TN
Sbjct: 63 QGGEILFVGTKKQAKDIIKEEAERCGAFYVNERWVGGLLTNFQTVRKSIMKLQTLERMEE 122
Query: 167 ------------------SEKL------FRAVTRLPDLVILTNTLTTVLEPNPAIGEAAK 202
EKL R + +LPD++ + +T+ + A+ EA K
Sbjct: 123 DGIFDVLPKKEVRNLRRKMEKLRKLYNGIRDMKKLPDVIWIVDTVREKI----AVSEARK 178
Query: 203 MCIPTVGIVDSNCNPNLITYPVPGNDDTPSAIQYYCQVFKTAILKGKKAKQDTLKLLSEK 262
+ IP V I DSNC+P +I Y +PGNDD +I+ A+L+GK+ ++ +++ K
Sbjct: 179 LGIPIVAIADSNCDPTVIDYTIPGNDDAIKSIKLLTSKIADAVLEGKQRRESAEEVVPTK 238
Query: 263 Q 263
+
Sbjct: 239 E 239
>sp|Q9ZE61|RS2_RICPR 30S ribosomal protein S2 OS=Rickettsia prowazekii (strain Madrid E)
GN=rpsB PE=3 SV=1
Length = 296
Score = 125 bits (313), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 71/226 (31%), Positives = 108/226 (47%), Gaps = 48/226 (21%)
Query: 67 VKVKDMFDAKVHLGHKIGSLDERMKPYIYGVRQGQIIFDLDQSAELLRDALNFVAHIAYR 126
+ +K++ DA VH GHK + +M YIYG R I DL QSA L+ ALN + +
Sbjct: 7 INIKELLDAGVHFGHKTSRWNPKMASYIYGERDDVHIIDLRQSAALMSVALNAIYETVKK 66
Query: 127 DGIVLFVGQSAQNSLLIEKTAQDCQEFAHTRFWRQGMFTNSEKLFRAVTRL--------- 177
DG +LFV Q S +I + A+ C ++ W GM TN + + ++ +L
Sbjct: 67 DGKILFVSTKIQASDIIAEYAEKCGQYYVNNRWLGGMLTNWKTIACSIEKLEKLEKTLES 126
Query: 178 -----------------------------------PDLVILTNTLTTVLEPNPAIGEAAK 202
PDL+++ +T + + AI EA K
Sbjct: 127 EEARICYTKKEILDMSRKKDKLLLSLAGIRNLNSKPDLLVVIDT----NKEHIAINEAVK 182
Query: 203 MCIPTVGIVDSNCNPNLITYPVPGNDDTPSAIQYYCQVFKTAILKG 248
+ IP V +VD+N NP+ + YP+PGNDD+ +I+ YC +F A L+G
Sbjct: 183 LNIPVVAVVDTNSNPDNVDYPIPGNDDSIRSIRLYCSLFADAALQG 228
>sp|A8EXF0|RS2_RICCK 30S ribosomal protein S2 OS=Rickettsia canadensis (strain McKiel)
GN=rpsB PE=3 SV=1
Length = 295
Score = 125 bits (313), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 71/226 (31%), Positives = 108/226 (47%), Gaps = 48/226 (21%)
Query: 67 VKVKDMFDAKVHLGHKIGSLDERMKPYIYGVRQGQIIFDLDQSAELLRDALNFVAHIAYR 126
V +K++ DA VH GHK + +M YIYG R I DL QSA L+ ALN + +
Sbjct: 7 VNIKELLDAGVHFGHKTSRWNPKMGSYIYGERDDVHIIDLRQSAVLMSVALNAIYETVKK 66
Query: 127 DGIVLFVGQSAQNSLLIEKTAQDCQEFAHTRFWRQGMFTNSEKLFRAVTRL--------- 177
DG +LFV Q S +I + A+ C ++ W GM TN + + ++ +L
Sbjct: 67 DGKILFVSTKIQASDIIAEYAEKCGQYYVNHRWLGGMLTNWKTIAGSIEKLNKLEKTLGN 126
Query: 178 -----------------------------------PDLVILTNTLTTVLEPNPAIGEAAK 202
PDL+++ +T + + AI EA K
Sbjct: 127 EEALMGYTKKEILDMSRKKDKLLLSLAGIRNLNSKPDLLVVIDT----NKEHIAINEAVK 182
Query: 203 MCIPTVGIVDSNCNPNLITYPVPGNDDTPSAIQYYCQVFKTAILKG 248
+ +P V +VD+N NP+ + YP+PGNDD+ +I+ YC +F A L+G
Sbjct: 183 LNVPIVAVVDTNSNPDNVDYPIPGNDDSIRSIRLYCSLFADAALQG 228
>sp|A8F0I9|RS2_RICM5 30S ribosomal protein S2 OS=Rickettsia massiliae (strain Mtu5)
GN=rpsB PE=3 SV=2
Length = 295
Score = 124 bits (311), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 107/226 (47%), Gaps = 48/226 (21%)
Query: 67 VKVKDMFDAKVHLGHKIGSLDERMKPYIYGVRQGQIIFDLDQSAELLRDALNFVAHIAYR 126
V +K++ DA VH GHK + +M YIYG R I DL QS L+ ALN + +
Sbjct: 7 VNIKELLDAGVHFGHKTSRWNPKMASYIYGERDDVHIIDLRQSVALMSVALNAIYETVKK 66
Query: 127 DGIVLFVGQSAQNSLLIEKTAQDCQEFAHTRFWRQGMFTNSEKLFRAVTRL--------- 177
DG +LFV Q S +I + A+ C ++ W GM TN + + ++ +L
Sbjct: 67 DGKILFVSTKIQASDIIAEYAEKCGQYYVNHRWLGGMLTNWKTIAGSIEKLNKLDKTLEN 126
Query: 178 -----------------------------------PDLVILTNTLTTVLEPNPAIGEAAK 202
PDL+++ +T + + AI EA K
Sbjct: 127 EEALMGYTKKEILDMSRKKDKLLLSLAGIRNLNSKPDLLVVIDT----NKEHIAINEAVK 182
Query: 203 MCIPTVGIVDSNCNPNLITYPVPGNDDTPSAIQYYCQVFKTAILKG 248
+ +P V +VD+N NP+ + YP+PGNDD+ +I+ YC +F A L+G
Sbjct: 183 LNVPIVAVVDTNSNPDNVDYPIPGNDDSIRSIRLYCSLFADAALQG 228
>sp|Q92JF5|RS2_RICCN 30S ribosomal protein S2 OS=Rickettsia conorii (strain ATCC VR-613
/ Malish 7) GN=rpsB PE=3 SV=1
Length = 295
Score = 124 bits (310), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 71/226 (31%), Positives = 106/226 (46%), Gaps = 48/226 (21%)
Query: 67 VKVKDMFDAKVHLGHKIGSLDERMKPYIYGVRQGQIIFDLDQSAELLRDALNFVAHIAYR 126
V +K + DA VH GHK + +M YIYG R I DL QS L+ ALN + +
Sbjct: 7 VNIKALLDAGVHFGHKTSRWNPKMASYIYGERDDVHIIDLRQSVALMSVALNAIYETVKK 66
Query: 127 DGIVLFVGQSAQNSLLIEKTAQDCQEFAHTRFWRQGMFTNSEKLFRAVTRL--------- 177
DG +LFV Q S +I + A+ C ++ W GM TN + + ++ +L
Sbjct: 67 DGKILFVSTKIQASDIIAEYAEKCGQYYVNHRWLGGMLTNWKTIAGSIEKLNKLDKTLEN 126
Query: 178 -----------------------------------PDLVILTNTLTTVLEPNPAIGEAAK 202
PDL+++ +T + + AI EA K
Sbjct: 127 EEALMGYTKKEILNMSRKKDKLLLSLAGIRNLNSKPDLLVVIDT----NKEHIAINEAVK 182
Query: 203 MCIPTVGIVDSNCNPNLITYPVPGNDDTPSAIQYYCQVFKTAILKG 248
+ +P V +VD+N NP+ + YP+PGNDD+ AI+ YC +F A L+G
Sbjct: 183 LNVPIVAVVDTNSNPDNVDYPIPGNDDSIRAIRLYCSLFADAALQG 228
>sp|C4K1A0|RS2_RICPU 30S ribosomal protein S2 OS=Rickettsia peacockii (strain Rustic)
GN=rpsB PE=3 SV=1
Length = 295
Score = 122 bits (307), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 106/226 (46%), Gaps = 48/226 (21%)
Query: 67 VKVKDMFDAKVHLGHKIGSLDERMKPYIYGVRQGQIIFDLDQSAELLRDALNFVAHIAYR 126
V +K + DA VH GHK + +M YIYG R I DL QS L+ ALN + +
Sbjct: 7 VNIKALLDAGVHFGHKTSRWNPKMASYIYGERDDVHIIDLRQSVALMSVALNAIYETVKK 66
Query: 127 DGIVLFVGQSAQNSLLIEKTAQDCQEFAHTRFWRQGMFTNSEKLFRAVTRL--------- 177
DG +LFV Q S +I + A+ C ++ W GM TN + + ++ +L
Sbjct: 67 DGKILFVSTKIQASDIIAEYAEKCGQYYVNHRWLGGMLTNWKTIAGSIEKLNKLDKTLEN 126
Query: 178 -----------------------------------PDLVILTNTLTTVLEPNPAIGEAAK 202
PDL+++ +T + + AI EA K
Sbjct: 127 EEALMGYTKKEILYMSRKKDKLLLSLAGIRNLNSKPDLLVVIDT----NKEHIAINEAVK 182
Query: 203 MCIPTVGIVDSNCNPNLITYPVPGNDDTPSAIQYYCQVFKTAILKG 248
+ +P V +VD+N NP+ + YP+PGNDD+ +I+ YC +F A L+G
Sbjct: 183 LNVPIVAVVDTNSNPDNVDYPIPGNDDSIRSIRLYCSLFADAALQG 228
>sp|A8GQP7|RS2_RICRS 30S ribosomal protein S2 OS=Rickettsia rickettsii (strain Sheila
Smith) GN=rpsB PE=3 SV=1
Length = 295
Score = 122 bits (307), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 106/226 (46%), Gaps = 48/226 (21%)
Query: 67 VKVKDMFDAKVHLGHKIGSLDERMKPYIYGVRQGQIIFDLDQSAELLRDALNFVAHIAYR 126
V +K + DA VH GHK + +M YIYG R I DL QS L+ ALN + +
Sbjct: 7 VNIKALLDAGVHFGHKTSRWNPKMASYIYGKRDDVHIIDLRQSVALMNVALNAIYETVKK 66
Query: 127 DGIVLFVGQSAQNSLLIEKTAQDCQEFAHTRFWRQGMFTNSEKLFRAVTRL--------- 177
DG +LFV Q S +I + A+ C ++ W GM TN + + ++ +L
Sbjct: 67 DGKILFVSTKIQASDIIAEYAEKCGQYYVNHRWLGGMLTNWKTIAGSIEKLNKLDKTLEN 126
Query: 178 -----------------------------------PDLVILTNTLTTVLEPNPAIGEAAK 202
PDL+++ +T + + AI EA K
Sbjct: 127 EEALMGYTKKEILDMSRKKDKLLLSLAGIRNLNSKPDLLVVIDT----NKEHIAINEAVK 182
Query: 203 MCIPTVGIVDSNCNPNLITYPVPGNDDTPSAIQYYCQVFKTAILKG 248
+ +P V +VD+N NP+ + YP+PGNDD+ +I+ YC +F A L+G
Sbjct: 183 LNVPIVAVVDTNSNPDNVDYPIPGNDDSIRSIRLYCSLFADAALQG 228
>sp|B0BW38|RS2_RICRO 30S ribosomal protein S2 OS=Rickettsia rickettsii (strain Iowa)
GN=rpsB PE=3 SV=1
Length = 295
Score = 122 bits (307), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 106/226 (46%), Gaps = 48/226 (21%)
Query: 67 VKVKDMFDAKVHLGHKIGSLDERMKPYIYGVRQGQIIFDLDQSAELLRDALNFVAHIAYR 126
V +K + DA VH GHK + +M YIYG R I DL QS L+ ALN + +
Sbjct: 7 VNIKALLDAGVHFGHKTSRWNPKMASYIYGKRDDVHIIDLRQSVALMNVALNAIYETVKK 66
Query: 127 DGIVLFVGQSAQNSLLIEKTAQDCQEFAHTRFWRQGMFTNSEKLFRAVTRL--------- 177
DG +LFV Q S +I + A+ C ++ W GM TN + + ++ +L
Sbjct: 67 DGKILFVSTKIQASDIIAEYAEKCGQYYVNHRWLGGMLTNWKTIAGSIEKLNKLDKTLEN 126
Query: 178 -----------------------------------PDLVILTNTLTTVLEPNPAIGEAAK 202
PDL+++ +T + + AI EA K
Sbjct: 127 EEALMGYTKKEILDMSRKKDKLLLSLAGIRNLNSKPDLLVVIDT----NKEHIAINEAVK 182
Query: 203 MCIPTVGIVDSNCNPNLITYPVPGNDDTPSAIQYYCQVFKTAILKG 248
+ +P V +VD+N NP+ + YP+PGNDD+ +I+ YC +F A L+G
Sbjct: 183 LNVPIVAVVDTNSNPDNVDYPIPGNDDSIRSIRLYCSLFADAALQG 228
>sp|C3PMC2|RS2_RICAE 30S ribosomal protein S2 OS=Rickettsia africae (strain ESF-5)
GN=rpsB PE=3 SV=1
Length = 295
Score = 122 bits (307), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 106/226 (46%), Gaps = 48/226 (21%)
Query: 67 VKVKDMFDAKVHLGHKIGSLDERMKPYIYGVRQGQIIFDLDQSAELLRDALNFVAHIAYR 126
V +K + DA VH GHK + +M YIYG R I DL QS L+ ALN + +
Sbjct: 7 VNIKALLDAGVHFGHKTSRWNPKMASYIYGERDDVHIIDLRQSVALMSVALNAIYETVKK 66
Query: 127 DGIVLFVGQSAQNSLLIEKTAQDCQEFAHTRFWRQGMFTNSEKLFRAVTRL--------- 177
DG +LFV Q S +I + A+ C ++ W GM TN + + ++ +L
Sbjct: 67 DGKILFVSTKIQASDIIAEYAEKCGQYYVNHRWLGGMLTNWKTIAGSIEKLNKLDKTLEN 126
Query: 178 -----------------------------------PDLVILTNTLTTVLEPNPAIGEAAK 202
PDL+++ +T + + AI EA K
Sbjct: 127 EEALMGYTKKEILNMSRKKDKLLLSLAGIRNLNSKPDLLVVIDT----NKEHIAINEAVK 182
Query: 203 MCIPTVGIVDSNCNPNLITYPVPGNDDTPSAIQYYCQVFKTAILKG 248
+ +P V +VD+N NP+ + YP+PGNDD+ +I+ YC +F A L+G
Sbjct: 183 LNVPIVAVVDTNSNPDNVDYPIPGNDDSIRSIRLYCSLFADAALQG 228
>sp|Q2GKU9|RS2_ANAPZ 30S ribosomal protein S2 OS=Anaplasma phagocytophilum (strain HZ)
GN=rpsB PE=3 SV=1
Length = 296
Score = 122 bits (305), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 74/219 (33%), Positives = 109/219 (49%), Gaps = 40/219 (18%)
Query: 69 VKDMFDAKVHLGHKIGSLDERMKPYIYGV-RQGQI-IFDLDQSAELLRDALNFVAHIAYR 126
++D+ +A VHLGHK G + M PYIYGV R I I DL ++A LLR+AL+ + + +R
Sbjct: 9 IRDLMEAGVHLGHKAGRWNPAMAPYIYGVHRYKDIHIIDLRKTAVLLRNALSVLYDVVHR 68
Query: 127 DGIVLFVGQSAQNSLLIEKTAQDCQEFAHTRFWRQGMFTNSEKLFRAVTRLPDLVILTNT 186
G VLFVG Q S +I + A C ++ W GM TN E + ++ RL D L N
Sbjct: 69 RGRVLFVGTKVQASNVIAEEAARCGQYYVNHRWLGGMLTNWETVSSSIRRLLDFEKLLND 128
Query: 187 -----------------------------------LTTVLEPNP---AIGEAAKMCIPTV 208
+ V++ N AI EA K+ IP V
Sbjct: 129 TDAKFTKKELLMFDKKREKLERSLGGIREMGGLPHILFVIDTNKEHIAIQEANKLKIPVV 188
Query: 209 GIVDSNCNPNLITYPVPGNDDTPSAIQYYCQVFKTAILK 247
++D+N +P + YP+PGNDD+ +I ++C+ IL+
Sbjct: 189 AVLDTNSDPRGVDYPIPGNDDSIRSIDFFCRAVSNTILE 227
>sp|Q2GCI4|RS2_NEOSM 30S ribosomal protein S2 OS=Neorickettsia sennetsu (strain
Miyayama) GN=rpsB PE=3 SV=1
Length = 298
Score = 121 bits (303), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 72/221 (32%), Positives = 109/221 (49%), Gaps = 39/221 (17%)
Query: 67 VKVKDMFDAKVHLGHKIGSLDERMKPYIYGVRQGQI-IFDLDQSAELLRDALNFVAHIAY 125
V VK++F+ HLGHK + +M YIYG + I DL ++ +LR ALN ++ +A
Sbjct: 8 VTVKNLFEVGAHLGHKTRFWNPKMVSYIYGTSNAKTHIVDLQKTVPMLRTALNAISDVAA 67
Query: 126 RDGIVLFVGQSAQNSLLIEKTAQDCQEFAHTRFWRQGMFTNSEKLFRAVTRL-------- 177
G VLFVG Q +I++ A C ++ W GMFTN + ++V +L
Sbjct: 68 NSGRVLFVGTKMQACDIIKEEATRCGQYYVNLRWPSGMFTNWNTVSKSVKKLVHYEKLLE 127
Query: 178 --PDLVILTNTLTT-------------------------VLEPNP---AIGEAAKMCIPT 207
D++ L+ V++P A+ EA K+ IP
Sbjct: 128 QEGDVLSKKERLSINRKRERIEKYLGGVRKMGGLPNIIFVIDPKKEHIAVEEAWKLGIPV 187
Query: 208 VGIVDSNCNPNLITYPVPGNDDTPSAIQYYCQVFKTAILKG 248
V +VD+NC+P+ ITY +PGNDD+ I+YYC + A+L G
Sbjct: 188 VAVVDTNCDPSKITYAIPGNDDSLRCIEYYCSLVADAVLVG 228
>sp|B4RBZ4|RS2_PHEZH 30S ribosomal protein S2 OS=Phenylobacterium zucineum (strain HLK1)
GN=rpsB PE=3 SV=1
Length = 295
Score = 118 bits (296), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 100/227 (44%), Gaps = 46/227 (20%)
Query: 69 VKDMFDAKVHLGHKIGSLDERMKPYIYGVRQGQIIFDLDQSAELLRDALNFVAHIAYRDG 128
++ + +A H GH+ + +M YI+G R I DL QS LL AL V +A G
Sbjct: 8 MRQLLEAGAHFGHQTHRWNPKMDKYIFGARSNIHIIDLSQSIPLLHQALVKVREVAAGGG 67
Query: 129 IVLFVGQSAQNSLLIEKTAQDCQEFAHTRFWRQGMFTNSEKLFRAVTRL----------- 177
+LFVG Q S I A+ C ++ W G TN + ++ RL
Sbjct: 68 RILFVGTKRQASEPIATAAKRCAQYYVNHRWLGGTLTNWRTVSNSIARLRELESVLGGEG 127
Query: 178 -------------------------------PDLVILTNTLTTVLEPNPAIGEAAKMCIP 206
PDL+ + +T + AI EA K+ IP
Sbjct: 128 QGRSKKELLQLTRERDKLELSLGGIKDMGGIPDLMFVIDTNKEAI----AIQEARKLNIP 183
Query: 207 TVGIVDSNCNPNLITYPVPGNDDTPSAIQYYCQVFKTAILKGKKAKQ 253
+ I+D+NCNP+ ITYP+PGNDD AIQ YC + AIL G A Q
Sbjct: 184 VIAILDTNCNPDGITYPIPGNDDAARAIQLYCDLMADAILDGLAAGQ 230
>sp|Q98MB2|RS2_RHILO 30S ribosomal protein S2 OS=Rhizobium loti (strain MAFF303099)
GN=rpsB PE=3 SV=1
Length = 260
Score = 118 bits (296), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 70/232 (30%), Positives = 104/232 (44%), Gaps = 46/232 (19%)
Query: 69 VKDMFDAKVHLGHKIGSLDERMKPYIYGVRQGQIIFDLDQSAELLRDALNFVAHIAYRDG 128
++ + +A +H GH+ + +M PYIYG R I DL Q+ LL AL V+ + G
Sbjct: 8 MRQLLEAGIHFGHQTHRWNPKMAPYIYGARNNIHIIDLSQTVPLLHQALKQVSDTVAKGG 67
Query: 129 IVLFVGQSAQNSLLIEKTAQDCQEFAHTRFWRQGMFTNSEKLFRAVTRL----------- 177
VLFVG Q S ++ AQ ++ W GM TN + + ++ RL
Sbjct: 68 RVLFVGTKRQASDIVADAAQRSAQYYVNSRWLGGMLTNWKTISNSIQRLRKLDEMLAGEA 127
Query: 178 -------------------------------PDLVILTNTLTTVLEPNPAIGEAAKMCIP 206
PDL+ + +T + AI EA ++ IP
Sbjct: 128 QGLTKKERLNLDREREKLDKALGGIKDMGSTPDLMFVIDTNKEAI----AILEAKRLGIP 183
Query: 207 TVGIVDSNCNPNLITYPVPGNDDTPSAIQYYCQVFKTAILKGKKAKQDTLKL 258
V I+DSNC+P+ I +P+PGNDD AIQ YC + A + G +Q L +
Sbjct: 184 VVAIIDSNCDPDKIDFPIPGNDDAARAIQLYCDLIAKAAIDGIARQQGALGV 235
>sp|C6E512|RS2_GEOSM 30S ribosomal protein S2 OS=Geobacter sp. (strain M21) GN=rpsB PE=3
SV=1
Length = 255
Score = 117 bits (293), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 108/230 (46%), Gaps = 39/230 (16%)
Query: 67 VKVKDMFDAKVHLGHKIGSLDERMKPYIYGVRQGQIIFDLDQSAELLRDALNFVAHIAYR 126
+ +K++ +A VH GH+ + +MKPYI+G R G I DL ++ L ++A +FV A
Sbjct: 4 ITMKELLEAGVHFGHQTKRWNPKMKPYIFGARNGIYIIDLQKTVRLFKNAYSFVTDAAQA 63
Query: 127 DGIVLFVGQSAQNSLLIEKTAQDCQEFAHTRFWRQGMFTNSEKLFRAVTRLP--DLVILT 184
VLFVG Q + + AQ C +F W GM TN + +++ RL D +I
Sbjct: 64 GETVLFVGTKKQAQDSVAEEAQRCGQFYVNDRWLGGMLTNFSTVKQSIDRLKRLDAMIAD 123
Query: 185 NTLTT----------------------------------VLEPNP---AIGEAAKMCIPT 207
T+ V++P A+ EA K+ IP
Sbjct: 124 GTIEAYTKKEQLKLAKEREKLEKTLGGIKGMGKVPGVLFVVDPKNEEIAVSEAKKLGIPV 183
Query: 208 VGIVDSNCNPNLITYPVPGNDDTPSAIQYYCQVFKTAILKGKKAKQDTLK 257
V IVD+NC+P+ I Y +PGNDD AI+ A+L+G +A+ L+
Sbjct: 184 VAIVDTNCDPDDINYVIPGNDDAIRAIRLLTSKMADAVLEGGQARNARLQ 233
>sp|B5EHW1|RS2_GEOBB 30S ribosomal protein S2 OS=Geobacter bemidjiensis (strain Bem /
ATCC BAA-1014 / DSM 16622) GN=rpsB PE=3 SV=1
Length = 255
Score = 117 bits (292), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 108/230 (46%), Gaps = 39/230 (16%)
Query: 67 VKVKDMFDAKVHLGHKIGSLDERMKPYIYGVRQGQIIFDLDQSAELLRDALNFVAHIAYR 126
+ +K++ +A VH GH+ + +MKPYI+G R G I DL ++ L ++A +FV A
Sbjct: 4 ITMKELLEAGVHFGHQTKRWNPKMKPYIFGARNGIYIIDLQKTVRLFKNAYSFVTDAAQA 63
Query: 127 DGIVLFVGQSAQNSLLIEKTAQDCQEFAHTRFWRQGMFTNSEKLFRAVTRLP--DLVILT 184
VLFVG Q + + AQ C +F W GM TN + +++ RL D +I
Sbjct: 64 GETVLFVGTKKQAQDSVAEEAQRCGQFYVNDRWLGGMLTNFATVKQSIDRLKRLDAMIAD 123
Query: 185 NTLTT----------------------------------VLEPNP---AIGEAAKMCIPT 207
T+ V++P A+ EA K+ IP
Sbjct: 124 GTIEAYTKKEQLKLAKEREKLEKTLGGIKGMGKVPGVLFVVDPKNEEIAVSEAKKLGIPV 183
Query: 208 VGIVDSNCNPNLITYPVPGNDDTPSAIQYYCQVFKTAILKGKKAKQDTLK 257
V IVD+NC+P+ I Y +PGNDD AI+ A+L+G +A+ L+
Sbjct: 184 VAIVDTNCDPDDINYVIPGNDDAIRAIRLLTSKMADAVLEGGQARNARLQ 233
>sp|B2S3J6|RS2_TREPS 30S ribosomal protein S2 OS=Treponema pallidum subsp. pallidum
(strain SS14) GN=rpsB PE=3 SV=1
Length = 291
Score = 116 bits (291), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/242 (29%), Positives = 109/242 (45%), Gaps = 49/242 (20%)
Query: 66 LVKVKDMFDAKVHLGHKIGSLDERMKPYIYGVRQGQIIFDLDQSAELLRDALNFVAHIAY 125
+V +K++ ++ VH GH++ D RMK YI+ R G I DL ++ +R+A + V
Sbjct: 3 VVTIKNLLESGVHFGHQVRRWDPRMKKYIFAERNGIHIIDLQKTITAIREAYDMVRRTVS 62
Query: 126 RDGIVLFVGQSAQNSLLIEKTAQDCQEFAHTRFWRQGMFTNSEKLFRAVTR--------- 176
VLFVG Q+ I K AQ C F T W GM TN + ++++R
Sbjct: 63 SGKSVLFVGTKKQSQQTIAKEAQRCGMFYVTNRWLGGMLTNFSTIRKSLSRLKKIERMEI 122
Query: 177 ----------------------------------LPDLVILTNTLTTVLEPNPAIGEAAK 202
LP +V + +T + AI EA +
Sbjct: 123 DGTFEHLSKKEVASLRKEHAKLEKNLGGIKEMKELPGVVFIIDTRKETI----AIREARR 178
Query: 203 MCIPTVGIVDSNCNPNLITYPVPGNDDTPSAIQYYCQVFKTAILKGKKAKQDTLKLLSEK 262
+ IP V +VD+NCNP I YP+PGNDD AI + Q+ A+++ + LK++
Sbjct: 179 VGIPIVAVVDTNCNPEGIDYPIPGNDDAIRAISLFTQLIANAVMEA--GNEHGLKIIENL 236
Query: 263 QE 264
Q+
Sbjct: 237 QD 238
>sp|O83615|RS2_TREPA 30S ribosomal protein S2 OS=Treponema pallidum (strain Nichols)
GN=rpsB PE=3 SV=1
Length = 291
Score = 116 bits (291), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/242 (29%), Positives = 109/242 (45%), Gaps = 49/242 (20%)
Query: 66 LVKVKDMFDAKVHLGHKIGSLDERMKPYIYGVRQGQIIFDLDQSAELLRDALNFVAHIAY 125
+V +K++ ++ VH GH++ D RMK YI+ R G I DL ++ +R+A + V
Sbjct: 3 VVTIKNLLESGVHFGHQVRRWDPRMKKYIFAERNGIHIIDLQKTITAIREAYDMVRRTVS 62
Query: 126 RDGIVLFVGQSAQNSLLIEKTAQDCQEFAHTRFWRQGMFTNSEKLFRAVTR--------- 176
VLFVG Q+ I K AQ C F T W GM TN + ++++R
Sbjct: 63 SGKSVLFVGTKKQSQQTIAKEAQRCGMFYVTNRWLGGMLTNFSTIRKSLSRLKKIERMEI 122
Query: 177 ----------------------------------LPDLVILTNTLTTVLEPNPAIGEAAK 202
LP +V + +T + AI EA +
Sbjct: 123 DGTFEHLSKKEVASLRKEHAKLEKNLGGIKEMKELPGVVFIIDTRKETI----AIREARR 178
Query: 203 MCIPTVGIVDSNCNPNLITYPVPGNDDTPSAIQYYCQVFKTAILKGKKAKQDTLKLLSEK 262
+ IP V +VD+NCNP I YP+PGNDD AI + Q+ A+++ + LK++
Sbjct: 179 VGIPIVAVVDTNCNPEGIDYPIPGNDDAIRAISLFTQLIANAVMEA--GNEHGLKIIENL 236
Query: 263 QE 264
Q+
Sbjct: 237 QD 238
>sp|Q5PAF6|RS2_ANAMM 30S ribosomal protein S2 OS=Anaplasma marginale (strain St. Maries)
GN=rpsB PE=3 SV=2
Length = 327
Score = 116 bits (290), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 70/219 (31%), Positives = 106/219 (48%), Gaps = 40/219 (18%)
Query: 69 VKDMFDAKVHLGHKIGSLDERMKPYIYGVRQGQII--FDLDQSAELLRDALNFVAHIAYR 126
++D+ +A VHLGHK G + M PYIYGV + + I DL ++ LLRDAL+ + + +
Sbjct: 9 IRDLVEAGVHLGHKAGRWNPAMAPYIYGVHKYKDIHVIDLRKTLVLLRDALSVLYDVVLK 68
Query: 127 DGIVLFVGQSAQNSLLIEKTAQDCQEFAHTRFWRQGMFTNSEKLFRAVTRLPDLVILTN- 185
G VLFVG Q S ++ + A C ++ W GM TN E + ++ RL + L N
Sbjct: 69 RGRVLFVGTKVQASNIVAEEATRCGQYYVNHRWLGGMLTNWETVSSSIRRLVEFERLINN 128
Query: 186 ----------------------TLTTVLEPNP---------------AIGEAAKMCIPTV 208
+L + E AI EA K+ IP V
Sbjct: 129 NEGQFTKKELLMLDKQRGKLERSLGGIREMGGLPHALFVIDTNKEHIAIREANKLKIPVV 188
Query: 209 GIVDSNCNPNLITYPVPGNDDTPSAIQYYCQVFKTAILK 247
I+D+N +P + YP+PGNDD+ +I ++C+ IL+
Sbjct: 189 AILDTNSDPGGVDYPIPGNDDSVRSIDFFCRAVSRTILE 227
>sp|Q6FZN0|RS2_BARQU 30S ribosomal protein S2 OS=Bartonella quintana (strain Toulouse)
GN=rpsB PE=3 SV=1
Length = 257
Score = 115 bits (287), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 72/229 (31%), Positives = 102/229 (44%), Gaps = 46/229 (20%)
Query: 72 MFDAKVHLGHKIGSLDERMKPYIYGVRQGQIIFDLDQSAELLRDALNFVAHIAYRDGIVL 131
+ +A VH GH+ + +M YIYG R I DL Q+ LL AL V+ R G +L
Sbjct: 11 LLEAGVHFGHQTHRWNPKMIRYIYGQRNNIHIIDLAQTVPLLHQALKLVSDTVARGGRIL 70
Query: 132 FVGQSAQNSLLIEKTAQDCQEFAHTRFWRQGMFTN------------------------- 166
FVG Q S +I A ++ W GM TN
Sbjct: 71 FVGTKRQASDIIADAANRSAQYYVNARWLGGMLTNWKTISNSIHRLRKLDKILATETQGF 130
Query: 167 -----------SEKLFRAVTRL------PDLVILTNTLTTVLEPNPAIGEAAKMCIPTVG 209
EKL RA+ + PDL+ + +T + N AI EA ++ IP +
Sbjct: 131 TKKERLNLERDREKLNRALGGIKDMGSVPDLIFIIDTN----KENIAIQEAKRLGIPVIA 186
Query: 210 IVDSNCNPNLITYPVPGNDDTPSAIQYYCQVFKTAILKGKKAKQDTLKL 258
I+D+NCNP+ + +P+PGNDD AI YC +F A L G +Q + +
Sbjct: 187 IIDTNCNPDNVDHPIPGNDDASRAISLYCDLFARAALDGIARQQGAMGI 235
>sp|B7IHT3|RS2_THEAB 30S ribosomal protein S2 OS=Thermosipho africanus (strain TCF52B)
GN=rpsB PE=3 SV=1
Length = 259
Score = 115 bits (287), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 69/225 (30%), Positives = 107/225 (47%), Gaps = 39/225 (17%)
Query: 66 LVKVKDMFDAKVHLGHKIGSLDERMKPYIYGVRQGQIIFDLDQSAELLRDALNFVAHIAY 125
++ +K + +A VH GH+ + +MK YI+G R+G I DL ++++LL +A NFV A
Sbjct: 3 VLTMKQLLEAGVHFGHRTQRWNPKMKEYIFGARKGIYIIDLQKTSKLLDEAYNFVRDKAA 62
Query: 126 RDGIVLFVGQSAQNSLLIEKTAQDCQEFAHTRFWRQGMFTNSEKLFRAVTRLPDLVILT- 184
G +LFVG Q +I++ A+ C F W G+ TN E + + + +L +L +
Sbjct: 63 EGGTILFVGTKKQAQQVIKQEAERCGAFYVNHRWLGGLLTNFETIRKRIDKLIELEEMEA 122
Query: 185 ------------NTLTTVLE--------------------------PNPAIGEAAKMCIP 206
+ L +LE A+ EA + IP
Sbjct: 123 NGEFDHLPKKEQSRLRRILEKLRKNLGGLKNMTSLPDVIYIVDPRKERNAVYEANLLKIP 182
Query: 207 TVGIVDSNCNPNLITYPVPGNDDTPSAIQYYCQVFKTAILKGKKA 251
TV IVD+NC+P+ I Y +PGNDD AIQ A L+G++
Sbjct: 183 TVAIVDTNCDPDEIDYIIPGNDDAIRAIQLITSKIADAYLEGREG 227
>sp|B9M5C6|RS2_GEOSF 30S ribosomal protein S2 OS=Geobacter sp. (strain FRC-32) GN=rpsB
PE=3 SV=1
Length = 255
Score = 115 bits (287), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 72/237 (30%), Positives = 107/237 (45%), Gaps = 39/237 (16%)
Query: 67 VKVKDMFDAKVHLGHKIGSLDERMKPYIYGVRQGQIIFDLDQSAELLRDALNFVAHIAYR 126
+ +K++ +A VH GH+ + +MKPYI+G R G I DL ++ L + A NFV A
Sbjct: 4 ITMKELLEAGVHFGHQTKRWNPKMKPYIFGARNGIYIIDLQKTVRLFKSAYNFVFEAAQA 63
Query: 127 DGIVLFVGQSAQNSLLIEKTAQDCQEFAHTRFWRQGMFTNSEKLFRAVTRLPDL------ 180
+LFVG Q + + AQ C F W GM TN + +++ RL +
Sbjct: 64 GETMLFVGTKKQAQDSVAEEAQRCGMFFVNDRWLGGMLTNFSTVKQSIERLKRIDAMFAD 123
Query: 181 ------------------VILTNTLTTVLEPNP---------------AIGEAAKMCIPT 207
V L TL + N A+ EA K+ IP
Sbjct: 124 GTIEAYTKKEALQMEKERVKLEKTLGGIKGMNKLPGLLFVIDPKNEEIAVSEAKKLGIPV 183
Query: 208 VGIVDSNCNPNLITYPVPGNDDTPSAIQYYCQVFKTAILKGKKAKQDTLKLLSEKQE 264
V IVD+NC+P+ I Y +PGNDD AI+ A+++G +A+ L+ +E E
Sbjct: 184 VAIVDTNCDPDNIDYVIPGNDDAIRAIRLLTSKVADAMIEGGQARNTQLQTDTEGAE 240
>sp|Q15WG3|RS2_PSEA6 30S ribosomal protein S2 OS=Pseudoalteromonas atlantica (strain T6c
/ ATCC BAA-1087) GN=rpsB PE=3 SV=1
Length = 243
Score = 114 bits (286), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 104/223 (46%), Gaps = 39/223 (17%)
Query: 67 VKVKDMFDAKVHLGHKIGSLDERMKPYIYGVRQGQIIFDLDQSAELLRDALNFVAHIAYR 126
V ++DM A VH GH+ + +MKP+I+G R I +L+++ L +ALN++ +A +
Sbjct: 4 VSMRDMLQAGVHFGHQTRYWNPKMKPFIFGARNKVHIINLEKTVPLFNNALNYIGSVASK 63
Query: 127 DGIVLFVGQSAQNSLLIEKTAQDCQEFAHTRFWRQGMFTNSEKLFRAVTRLPDL------ 180
G +LFVG S + A C +F + W GM TN + + +++ RL DL
Sbjct: 64 KGKILFVGTKRAASDSVRDAAVKCDQFYVNKRWLGGMLTNWKTVRQSIKRLKDLEQQSQD 123
Query: 181 ------------------VILTNTLTTVLEPNP---------------AIGEAAKMCIPT 207
L N+L + AI EA + IP
Sbjct: 124 GTFDKITKKEVLMLQREMAKLENSLGGIKNMGGLPDCLFVVDADHEHIAITEARNLGIPV 183
Query: 208 VGIVDSNCNPNLITYPVPGNDDTPSAIQYYCQVFKTAILKGKK 250
V IVD+N NP+ + Y +PGNDD A+Q Y A+++G++
Sbjct: 184 VSIVDTNSNPDGVDYIIPGNDDAIRAVQLYLNSAADAVIEGRE 226
>sp|A6LLI6|RS2_THEM4 30S ribosomal protein S2 OS=Thermosipho melanesiensis (strain BI429
/ DSM 12029) GN=rpsB PE=3 SV=1
Length = 257
Score = 114 bits (285), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 68/225 (30%), Positives = 107/225 (47%), Gaps = 39/225 (17%)
Query: 66 LVKVKDMFDAKVHLGHKIGSLDERMKPYIYGVRQGQIIFDLDQSAELLRDALNFVAHIAY 125
+V +K + +A VH GH+ + +MK YI+G R+G I DL ++++LL +A NFV A
Sbjct: 3 VVTMKQLLEAGVHFGHRTQRWNPKMKEYIFGARKGIYIIDLQKTSKLLEEAYNFVRDKAA 62
Query: 126 RDGIVLFVGQSAQNSLLIEKTAQDCQEFAHTRFWRQGMFTNSEKLFRAVTRLPDLVILTN 185
G +LFVG Q +I++ A+ C F W G+ TN + + + + +L +L +
Sbjct: 63 EGGTILFVGTKKQAQQVIKQEAERCGAFYVNHRWLGGLLTNFQTIRKRIDKLIELEEMEA 122
Query: 186 T------------------------------------LTTVLEPNP---AIGEAAKMCIP 206
+ +++P A+ EA + IP
Sbjct: 123 NGEFDNLPKKEQSRLRRILDKLRKNLGGLKEMDRIPDVIYIVDPRKERNAVYEANLLKIP 182
Query: 207 TVGIVDSNCNPNLITYPVPGNDDTPSAIQYYCQVFKTAILKGKKA 251
TV IVD+NC+P+ I Y +PGNDD AIQ A L+GK+
Sbjct: 183 TVSIVDTNCDPDEIDYIIPGNDDAIRAIQLITSKIADAYLEGKEG 227
>sp|P56351|RR2_CHLVU 30S ribosomal protein S2, chloroplastic OS=Chlorella vulgaris
GN=rps2 PE=3 SV=1
Length = 267
Score = 114 bits (285), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 74/226 (32%), Positives = 102/226 (45%), Gaps = 47/226 (20%)
Query: 67 VKVKDMFDAKVHLGHKIGSLDERMKPYIYGVRQGQIIFDLDQSAELLRDALNFVAHIAYR 126
VK++DM + +H GH + RM PYIYG R G+ I DL Q+ LL L F+ A +
Sbjct: 5 VKLEDMIQSGMHFGHSTREWNPRMAPYIYGERNGRHILDLVQTYYLLNKVLAFLEEQAAQ 64
Query: 127 DGIVLFVGQSAQNSLLIEKTAQDCQEFAHTRFWRQGMFTNS------------------- 167
LFVG Q + LI KTA C+ F + W GM TN
Sbjct: 65 GKTFLFVGTKQQAAPLIAKTALACESFYVNQRWLGGMLTNWRTIQKSLRKLQEYRRAEER 124
Query: 168 ---------------------EKLFRAV---TRLPDLVILTNTLTTVLEPNPAIGEAAKM 203
EK V +RLP +VIL + A+ E ++
Sbjct: 125 GDWNLLKKQEVARKRREKDRLEKYLSGVENMSRLPGVVILIGQTEEI----HAVKECRQL 180
Query: 204 CIPTVGIVDSNCNPNLITYPVPGNDDTPSAIQYYCQVFKTAILKGK 249
IPTV ++DSNC+PNL + +P NDD+ SA++ F+ AI G+
Sbjct: 181 GIPTVTLLDSNCDPNLADWFLPANDDSVSALRLILAWFQQAIQTGQ 226
>sp|A5G7W8|RS2_GEOUR 30S ribosomal protein S2 OS=Geobacter uraniireducens (strain Rf4)
GN=rpsB PE=3 SV=1
Length = 256
Score = 113 bits (283), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 68/225 (30%), Positives = 104/225 (46%), Gaps = 39/225 (17%)
Query: 67 VKVKDMFDAKVHLGHKIGSLDERMKPYIYGVRQGQIIFDLDQSAELLRDALNFVAHIAYR 126
+ +K++ +A VH GH+ + +MKPYI+G R G I DL ++ L + A NFV A
Sbjct: 4 ITMKELLEAGVHFGHQTKRWNPKMKPYIFGARNGIYIIDLQKTVRLFKGAYNFVVDAAQS 63
Query: 127 DGIVLFVGQSAQNSLLIEKTAQDCQEFAHTRFWRQGMFTNSEKLFRAVTRLP--DLVILT 184
+LFVG Q + + AQ C F W GM TN + +++ RL D ++
Sbjct: 64 GETMLFVGTKKQAQDSVSEEAQRCGMFYVNDRWLGGMLTNFSTVKQSIDRLKRLDAMVAD 123
Query: 185 NTLTT----------------------------------VLEPNP---AIGEAAKMCIPT 207
T+ V++P A+ EA K+ IP
Sbjct: 124 GTIEAYTKKEALQMEKDRQKLEKTLGGIKGMNKLPGVLFVIDPKNEEIAVSEAKKLGIPV 183
Query: 208 VGIVDSNCNPNLITYPVPGNDDTPSAIQYYCQVFKTAILKGKKAK 252
V IVD+NC+P+ I Y +PGNDD AI+ A+++G +A+
Sbjct: 184 VAIVDTNCDPDDIDYVIPGNDDAIRAIRLLTSKVADAMIEGGQAR 228
>sp|A8FY42|RS2_SHESH 30S ribosomal protein S2 OS=Shewanella sediminis (strain HAW-EB3)
GN=rpsB PE=3 SV=1
Length = 242
Score = 113 bits (282), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 112/233 (48%), Gaps = 45/233 (19%)
Query: 67 VKVKDMFDAKVHLGHKIGSLDERMKPYIYGVRQGQIIFDLDQSAELLRDALNFVAHIAYR 126
V ++DM A VH GH+ + +MKP+I+G R G I +L+ + + +AL F++++A +
Sbjct: 4 VSMRDMLQAGVHFGHQTRYWNPKMKPFIFGARNGVHIINLEHTVPMFNEALAFISNVASK 63
Query: 127 DGIVLFVGQSAQNSLLIEKTAQDCQEFAHTRFWRQGMFTNSEKLFRAVTRLPDL------ 180
G VLFVG S I+++A C++F W GM TN + + +++ RL DL
Sbjct: 64 KGKVLFVGTKRAASEAIKESAISCEQFYVDHRWLGGMLTNWKTVRQSIKRLKDLESQSVD 123
Query: 181 -----------VILTNTLTTVLEP----------------------NPAIGEAAKMCIPT 207
++ T L + + + AI EA + IP
Sbjct: 124 GTFDKLTKKEALMRTRELEKLEKSLGGIKNMGGLPDVIFVIGADHEHIAIKEANNLGIPV 183
Query: 208 VGIVDSNCNPNLITYPVPGNDDTPSAIQYYCQVFKTAILKGK------KAKQD 254
V +VD+N +P+ I Y VPGNDD +I+ Y Q A G+ +A+QD
Sbjct: 184 VAVVDTNSSPDGINYIVPGNDDAMRSIRLYTQSVAAAAKAGRGQDLAVQAEQD 236
>sp|B8CQ85|RS2_SHEPW 30S ribosomal protein S2 OS=Shewanella piezotolerans (strain WP3 /
JCM 13877) GN=rpsB PE=3 SV=1
Length = 242
Score = 112 bits (281), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 111/233 (47%), Gaps = 45/233 (19%)
Query: 67 VKVKDMFDAKVHLGHKIGSLDERMKPYIYGVRQGQIIFDLDQSAELLRDALNFVAHIAYR 126
V ++DM A VH GH+ + +MKP+I+G R G I +L+ + + +AL F+++IA +
Sbjct: 4 VSMRDMLQAGVHFGHQTRYWNPKMKPFIFGARNGVHIINLEHTVPMFNEALAFISNIASK 63
Query: 127 DGIVLFVGQSAQNSLLIEKTAQDCQEFAHTRFWRQGMFTNSEKLFRAVTRLPDL------ 180
G VLFVG S I++ A C +F W GM TN + + +++ RL DL
Sbjct: 64 KGKVLFVGTKRAASEAIKEAAVSCDQFYVDHRWLGGMLTNWKTVRQSIKRLKDLESQSID 123
Query: 181 -----------VILTNTLTTVLEP----------------------NPAIGEAAKMCIPT 207
++ T L + + + AI EA + IP
Sbjct: 124 GTFDKLTKKEALMRTRELEKLEKSLGGIKNMAGLPDVIFVIGADHEHIAIKEANNLGIPV 183
Query: 208 VGIVDSNCNPNLITYPVPGNDDTPSAIQYYCQVFKTAILKGK------KAKQD 254
V +VD+N +P+ I Y +PGNDD +I+ Y + TA G+ +A+QD
Sbjct: 184 VAVVDTNSSPDGINYIIPGNDDAMRSIRLYTESVATAAKAGRNQDLAVQAEQD 236
>sp|A5D2T5|RS2_PELTS 30S ribosomal protein S2 OS=Pelotomaculum thermopropionicum (strain
DSM 13744 / JCM 10971 / SI) GN=rpsB PE=3 SV=1
Length = 232
Score = 112 bits (281), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 106/227 (46%), Gaps = 39/227 (17%)
Query: 66 LVKVKDMFDAKVHLGHKIGSLDERMKPYIYGVRQGQIIFDLDQSAELLRDALNFVAHIAY 125
++ +K + +A VH GH+ + +M PYI+ R G I DL ++ + + +A NF+ +A
Sbjct: 3 VISMKQLLEAGVHFGHQTRRWNPKMAPYIFTDRNGIYIIDLQKTVKKVEEAYNFIKQLAA 62
Query: 126 RDGIVLFVGQSAQNSLLIEKTAQDCQEFAHTRFWRQGMFTNSEKLFRAVTRLPDLVILTN 185
VLFVG Q +++ A+ C F + W GM TN + + R + RL +L +
Sbjct: 63 EGETVLFVGTKKQAQEAVQEEAERCGMFYVNQRWLGGMLTNFQTIRRRIDRLQELEKMEE 122
Query: 186 TLTT------------------------------------VLEPNP---AIGEAAKMCIP 206
+ V++P A+ EA K+ IP
Sbjct: 123 NGSLEVLPKKEVAELMHEKEKLQKFLGGIKEMRRLPGALFVIDPRKERIAVAEARKLGIP 182
Query: 207 TVGIVDSNCNPNLITYPVPGNDDTPSAIQYYCQVFKTAILKGKKAKQ 253
V IVD+NC+P+ + Y +PGNDD A++ A+L+GK+ +Q
Sbjct: 183 IVAIVDTNCDPDEVDYVIPGNDDAIRAVRLLTAKMADAVLEGKQGEQ 229
>sp|A0KHG3|RS2_AERHH 30S ribosomal protein S2 OS=Aeromonas hydrophila subsp. hydrophila
(strain ATCC 7966 / NCIB 9240) GN=rpsB PE=3 SV=1
Length = 242
Score = 112 bits (280), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 103/222 (46%), Gaps = 39/222 (17%)
Query: 67 VKVKDMFDAKVHLGHKIGSLDERMKPYIYGVRQGQIIFDLDQSAELLRDALNFVAHIAYR 126
V ++DM A VH GH+ + +MK YI+G R I +L+++ + DA+NF++ +A +
Sbjct: 4 VSMRDMLQAGVHFGHQTRYWNPKMKSYIFGARSKVHIINLEKTVPMFDDAMNFISSVAAK 63
Query: 127 DGIVLFVGQSAQNSLLIEKTAQDCQEFAHTRFWRQGMFTNSEKLFRAVTRLPDL------ 180
G VLFVG S +++ A+ C +F W GM TN + + +++ RL DL
Sbjct: 64 KGKVLFVGTKRAASEAVKEAAERCDQFYVNHRWLGGMLTNWKTVRQSIKRLKDLETQSQD 123
Query: 181 ----------VILTNTLTTVLEPN-----------------------PAIGEAAKMCIPT 207
++ LE + AI EA + IP
Sbjct: 124 GTFDKLTKKEALMRTREMEKLEKSLGGIKNMGGLPDVLFVVDADHEHIAIKEANNLGIPV 183
Query: 208 VGIVDSNCNPNLITYPVPGNDDTPSAIQYYCQVFKTAILKGK 249
V IVD+N NP+ + Y +PGNDD A+Q Y +L+ +
Sbjct: 184 VSIVDTNSNPDGVDYVIPGNDDAIRAVQLYLNAAADTVLEAR 225
>sp|Q39W88|RS2_GEOMG 30S ribosomal protein S2 OS=Geobacter metallireducens (strain GS-15
/ ATCC 53774 / DSM 7210) GN=rpsB PE=3 SV=1
Length = 251
Score = 112 bits (280), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 69/230 (30%), Positives = 106/230 (46%), Gaps = 39/230 (16%)
Query: 67 VKVKDMFDAKVHLGHKIGSLDERMKPYIYGVRQGQIIFDLDQSAELLRDALNFVAHIAYR 126
V +K++ +A VH GH+ + +MKPYI+G R G I DL ++ L ++A +FV A
Sbjct: 4 VTMKELLEAGVHFGHQTKRWNPKMKPYIFGARNGIYIIDLQKTVRLFKNAYSFVRECAQS 63
Query: 127 DGIVLFVGQSAQNSLLIEKTAQDCQEFAHTRFWRQGMFTNSEKLFRAVTRLP--DLVILT 184
+LFVG Q I + A C + + W GM TN + +++ RL D +
Sbjct: 64 GETILFVGTKKQAQDAIGEEASRCNMYYVNQRWLGGMLTNFATVKQSIDRLKRLDAMFAD 123
Query: 185 NTLTT----------------------------------VLEPNP---AIGEAAKMCIPT 207
T+ V++P AI EA K+ IP
Sbjct: 124 GTVEAYTKKEALQLEKERQKLEKTLGGIKGMGKVPGALFVIDPKNETIAINEAKKLGIPV 183
Query: 208 VGIVDSNCNPNLITYPVPGNDDTPSAIQYYCQVFKTAILKGKKAKQDTLK 257
V +VD+NC+P+ I Y +PGNDD AI+ A+L+G +A+ L+
Sbjct: 184 VAVVDTNCDPDPIDYVIPGNDDAIRAIRLLTSKMADAVLEGAQARDAQLQ 233
>sp|Q6MGY6|RS2_BDEBA 30S ribosomal protein S2 OS=Bdellovibrio bacteriovorus (strain ATCC
15356 / DSM 50701 / NCIB 9529 / HD100) GN=rpsB PE=3 SV=1
Length = 313
Score = 111 bits (278), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 68/236 (28%), Positives = 110/236 (46%), Gaps = 39/236 (16%)
Query: 67 VKVKDMFDAKVHLGHKIGSLDERMKPYIYGVRQGQIIFDLDQSAELLRDALNFVAHIAYR 126
V +K+M DA VH GH+ + +MKPY+Y R G I DL ++ A FV IA
Sbjct: 4 VTMKEMLDAGVHFGHQTQRWNPKMKPYVYTARGGIHIIDLQKTVVRANKAAEFVKEIAAN 63
Query: 127 DGIVLFVGQSAQNSLLIEKTAQDCQEFAHTRFWRQGMFTNSEKLFRAVTRL--------- 177
G ++FVG Q I++ A C ++ T+ W GM TN E + ++ RL
Sbjct: 64 GGRLIFVGTKKQAIEPIQEAAAKCGQYYVTKRWLGGMMTNFETIKSSIDRLRKIDTMKEK 123
Query: 178 ---------------PDLVILTNTLTTV--LEPNP-------------AIGEAAKMCIPT 207
+ + LT+ L + ++ P A+ EA ++ IP
Sbjct: 124 GEFNYLTKKERAKLEKEYLRLTDFLAGIRDMKEMPSAMFVVDLPKEHIAVAEAKRLGIPV 183
Query: 208 VGIVDSNCNPNLITYPVPGNDDTPSAIQYYCQVFKTAILKGKKAKQDTLKLLSEKQ 263
V I D+N +P + + +PGNDD +I+ + + A L+G K + L+ +++KQ
Sbjct: 184 VAIADTNSDPESVDFAIPGNDDAIRSIKLFSNLVADAYLEGAKEWEGKLRTMTDKQ 239
>sp|Q2NRK7|RS2_SODGM 30S ribosomal protein S2 OS=Sodalis glossinidius (strain morsitans)
GN=rpsB PE=3 SV=1
Length = 241
Score = 110 bits (276), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 102/222 (45%), Gaps = 39/222 (17%)
Query: 67 VKVKDMFDAKVHLGHKIGSLDERMKPYIYGVRQGQIIFDLDQSAELLRDALNFVAHIAYR 126
V ++DM A VH GH+ + +MKP+I+G R I +L+Q+ L DAL + IA R
Sbjct: 4 VSMRDMLQAGVHFGHQTRYWNPKMKPFIFGARNKVHIINLEQTVPLFNDALAELNKIASR 63
Query: 127 DGIVLFVGQSAQNSLLIEKTAQDCQEFAHTRFWRQGMFTNSEKLFRAVTRLPDLVI---- 182
G +LFVG S +++ A C +F W GM TN + + +++ RL DL
Sbjct: 64 KGKILFVGTKRAASEAVKEAANSCDQFFVNHRWLGGMLTNWKTVRQSIKRLKDLETQSQD 123
Query: 183 --------------------LTNTLTTVLE----PNP-----------AIGEAAKMCIPT 207
L N+L + + P+ AI EA + IP
Sbjct: 124 GTFEKLTKKEALMRTRELDKLENSLGGIKDMGGLPDALFVIDAEHEHIAINEANNLGIPV 183
Query: 208 VGIVDSNCNPNLITYPVPGNDDTPSAIQYYCQVFKTAILKGK 249
IVD+N +P+ + + +PGNDD AI Y T + KG+
Sbjct: 184 FAIVDTNSDPDGVDFIIPGNDDAIRAINLYLTAVATTVRKGR 225
>sp|C4L864|RS2_TOLAT 30S ribosomal protein S2 OS=Tolumonas auensis (strain DSM 9187 /
TA4) GN=rpsB PE=3 SV=1
Length = 242
Score = 110 bits (276), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 104/218 (47%), Gaps = 39/218 (17%)
Query: 67 VKVKDMFDAKVHLGHKIGSLDERMKPYIYGVRQGQIIFDLDQSAELLRDALNFVAHIAYR 126
V ++DM A VH GH+ + +MKP+I+G R I +L+++ + DALN+++ +A +
Sbjct: 4 VSMRDMLQAGVHFGHQTRFWNPKMKPFIFGARNNVHIINLEKTVPMFDDALNYLSSVASK 63
Query: 127 DGIVLFVGQSAQNSLLIEKTAQDCQEFAHTRFWRQGMFTNSEKLFRAVTRLPDLVI---- 182
G +LFVG + +++ A +C++F W GM TN + + +++ RL DL
Sbjct: 64 KGKILFVGTKRAATEAVKEAAANCEQFYVNHRWLGGMLTNWKTVRQSIKRLKDLEAQSLD 123
Query: 183 --------------------LTNTLTTVLE---------------PNPAIGEAAKMCIPT 207
L +L + + + AI EA + IP
Sbjct: 124 GTFEKLTKKEALMRTREMEKLEKSLGGIKDMGGLPDVLFVIDADHEHIAIKEANNLGIPV 183
Query: 208 VGIVDSNCNPNLITYPVPGNDDTPSAIQYYCQVFKTAI 245
V IVD+N NP+ + Y +PGNDD A+Q Y +I
Sbjct: 184 VSIVDTNSNPDGVDYIIPGNDDAIRAVQLYLNAAADSI 221
>sp|Q1D1H9|RS2_MYXXD 30S ribosomal protein S2 OS=Myxococcus xanthus (strain DK 1622)
GN=rpsB PE=3 SV=1
Length = 312
Score = 110 bits (275), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 101/221 (45%), Gaps = 39/221 (17%)
Query: 67 VKVKDMFDAKVHLGHKIGSLDERMKPYIYGVRQGQIIFDLDQSAELLRDALNFVAHIAYR 126
+ ++ + +A VH GH+ + +MKP+I+G R G I DL ++ + R A FVA I R
Sbjct: 7 ITMRQLLEAGVHFGHQTKRWNPKMKPFIFGARNGIYIIDLQKTVVMARSAFRFVADITAR 66
Query: 127 DGIVLFVGQSAQNSLLIEKTAQDCQEFAHTRFWRQGMFTNSEKLFRAVTRLPDLVILTNT 186
G VLFVG Q ++ + A +F T W G TN + + + + RL L +
Sbjct: 67 GGSVLFVGTKKQAQDVVREEASRAGQFFVTSRWLGGTLTNFKTIKQGIDRLKTLEKMAED 126
Query: 187 LT------------------------------------TVLEPNP---AIGEAAKMCIPT 207
T V++P AI EA ++ IP
Sbjct: 127 GTFERLPKKEVAQLEREREKLEKNLGGVKEMSKLPRCVFVIDPKKEHIAIHEAGRLGIPV 186
Query: 208 VGIVDSNCNPNLITYPVPGNDDTPSAIQYYCQVFKTAILKG 248
+G+VD+NC+P+ I + +PGNDD +I+ + A L+G
Sbjct: 187 IGLVDTNCDPDGIDFVIPGNDDAIRSIKLFTSKIAEACLEG 227
>sp|A4SQI2|RS2_AERS4 30S ribosomal protein S2 OS=Aeromonas salmonicida (strain A449)
GN=rpsB PE=3 SV=1
Length = 242
Score = 110 bits (275), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 101/222 (45%), Gaps = 39/222 (17%)
Query: 67 VKVKDMFDAKVHLGHKIGSLDERMKPYIYGVRQGQIIFDLDQSAELLRDALNFVAHIAYR 126
V ++DM A VH GH+ + +MK YI+G R I +L+++ + DA+NF++ +A +
Sbjct: 4 VSMRDMLQAGVHFGHQTRYWNPKMKSYIFGARSKVHIINLEKTVPMFDDAMNFISSVAAK 63
Query: 127 DGIVLFVGQSAQNSLLIEKTAQDCQEFAHTRFWRQGMFTNSEKLFRAVTRLPDL------ 180
G VLFVG S ++ A C +F W GM TN + + +++ RL DL
Sbjct: 64 KGKVLFVGTKRAASEAVKDAAGRCDQFYVNHRWLGGMLTNWKTVRQSIKRLKDLETQSQD 123
Query: 181 ----------VILTNTLTTVLEPN-----------------------PAIGEAAKMCIPT 207
++ LE + AI EA + IP
Sbjct: 124 GTFEKLTKKEALMRTREMDKLEKSLGGIKNMGGLPDVLFVVDADHEHIAIKEANNLGIPV 183
Query: 208 VGIVDSNCNPNLITYPVPGNDDTPSAIQYYCQVFKTAILKGK 249
V IVD+N NP+ + Y +PGNDD A+Q Y +L+ +
Sbjct: 184 VSIVDTNSNPDGVDYVIPGNDDAIRAVQLYLNAAADTVLEAR 225
>sp|Q7N8P7|RS2_PHOLL 30S ribosomal protein S2 OS=Photorhabdus luminescens subsp.
laumondii (strain TT01) GN=rpsB PE=3 SV=1
Length = 241
Score = 110 bits (274), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 106/222 (47%), Gaps = 39/222 (17%)
Query: 67 VKVKDMFDAKVHLGHKIGSLDERMKPYIYGVRQGQIIFDLDQSAELLRDALNFVAHIAYR 126
V ++DM A VH GH+ + +MKP+I+G R I +L+++ + DAL + IA R
Sbjct: 4 VSMRDMLQAGVHFGHQTRYWNPKMKPFIFGARNKVHIINLEKTVPMFNDALAELNKIASR 63
Query: 127 DGIVLFVGQSAQNSLLIEKTAQDCQEFAHTRFWRQGMFTNSEKLFRAVTRLPDLVI---- 182
G +LFVG S +++ AQ+C +F W GM TN + + +++ RL DL
Sbjct: 64 KGKILFVGTKRAASEAVKEAAQNCDQFFVNHRWLGGMLTNWKTVRQSIKRLKDLEAQSQD 123
Query: 183 --------------------LTNTLTTVLE----PNP-----------AIGEAAKMCIPT 207
L N+L + + P+ AI EA + IP
Sbjct: 124 GTFDKLTKKEALIRSRELGKLENSLGGIKDMGGLPDALFVIDAEHEHIAIKEANNLGIPV 183
Query: 208 VGIVDSNCNPNLITYPVPGNDDTPSAIQYYCQVFKTAILKGK 249
+VD+N +P+ + + +PGNDD A++ Y TA+ +G+
Sbjct: 184 FAVVDTNSDPDGVDFIIPGNDDAIRAVKLYLGAVATAVREGR 225
>sp|A8H6L6|RS2_SHEPA 30S ribosomal protein S2 OS=Shewanella pealeana (strain ATCC 700345
/ ANG-SQ1) GN=rpsB PE=3 SV=1
Length = 242
Score = 110 bits (274), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/233 (29%), Positives = 110/233 (47%), Gaps = 45/233 (19%)
Query: 67 VKVKDMFDAKVHLGHKIGSLDERMKPYIYGVRQGQIIFDLDQSAELLRDALNFVAHIAYR 126
V ++DM A VH GH+ + +MKP+I+G R G I +L+ + + +AL F++++A +
Sbjct: 4 VSMRDMLQAGVHFGHQTRYWNPKMKPFIFGARNGVHIINLEHTVPMFNEALAFISNVASK 63
Query: 127 DGIVLFVGQSAQNSLLIEKTAQDCQEFAHTRFWRQGMFTNSEKLFRAVTRLPDL------ 180
G VLFVG S I++ A C ++ W GM TN + + +++ RL DL
Sbjct: 64 KGKVLFVGTKRAASEAIKEAAVSCDQYYVDHRWLGGMLTNWKTVRQSIKRLKDLESQSVD 123
Query: 181 -----------VILTNTLTTVLEP----------------------NPAIGEAAKMCIPT 207
++ T L + + + AI EA + IP
Sbjct: 124 GTFDKLTKKEALMRTRELDKLEKSLGGIKNMAGLPDVIFVIGADHEHIAIKEANNLGIPV 183
Query: 208 VGIVDSNCNPNLITYPVPGNDDTPSAIQYYCQVFKTAILKGK------KAKQD 254
V +VD+N +P+ I Y +PGNDD +I+ Y Q A G+ +A+QD
Sbjct: 184 VAVVDTNSSPDGINYIIPGNDDAMRSIRLYTQSVAAAAKAGRGQDLAVQAEQD 236
>sp|B0U101|RS2_FRAP2 30S ribosomal protein S2 OS=Francisella philomiragia subsp.
philomiragia (strain ATCC 25017) GN=rpsB PE=3 SV=2
Length = 239
Score = 110 bits (274), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 101/217 (46%), Gaps = 39/217 (17%)
Query: 69 VKDMFDAKVHLGHKIGSLDERMKPYIYGVRQGQIIFDLDQSAELLRDALNFVAHIAYRDG 128
+K+M A VH GHK + +MK YI+G+ G I +L+++ L +DA+NFV G
Sbjct: 4 MKEMLSAGVHFGHKKAFWNPQMKEYIFGINHGVHIINLEKTVPLFQDAVNFVGKTVANGG 63
Query: 129 IVLFVGQSAQNSLLIEKTAQDCQEFAHTRFWRQGMFTNSEKLFRAVTRLPDL-------- 180
VLFVG Q +IE A+ C + W GM TN + + +++ RL L
Sbjct: 64 KVLFVGTKRQAQDIIEAEAKRCGMPFVSHRWLGGMLTNYKTVRQSIKRLAQLEKMKEDGT 123
Query: 181 -------VILTNTLT---------------------TVLEPNP---AIGEAAKMCIPTVG 209
+L N T V++ N AI EA K+ I V
Sbjct: 124 FESLTKKEMLQNIRTIEKLEKVLGGIKEMGGLPDAIVVIDSNKEHIAIQEAQKLGIKVVS 183
Query: 210 IVDSNCNPNLITYPVPGNDDTPSAIQYYCQVFKTAIL 246
IVD+N NP I Y +PGNDD +I +Y + F A++
Sbjct: 184 IVDTNSNPEGIDYIIPGNDDAVKSISFYMKKFADAVI 220
>sp|B3E716|RS2_GEOLS 30S ribosomal protein S2 OS=Geobacter lovleyi (strain ATCC BAA-1151
/ DSM 17278 / SZ) GN=rpsB PE=3 SV=1
Length = 257
Score = 109 bits (273), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/234 (28%), Positives = 106/234 (45%), Gaps = 39/234 (16%)
Query: 67 VKVKDMFDAKVHLGHKIGSLDERMKPYIYGVRQGQIIFDLDQSAELLRDALNFVAHIAYR 126
+ +K++ +A VH GH+ + +MKPYI+G R G I DL ++ + A NFV A +
Sbjct: 4 ISMKELLEAGVHFGHQTKRWNPKMKPYIFGARNGIYIIDLQKTVRYFKSAYNFVKESAEQ 63
Query: 127 DGIVLFVGQSAQNSLLIEKTAQDCQEFAHTRFWRQGMFTNSEKLFRAVTRLPDLVILTNT 186
VLFVG Q + + A C ++ + W GM TN + +++ RL L +
Sbjct: 64 GNTVLFVGTKKQAQDSVAEEATRCGQYYVNQRWLGGMLTNFSTVKQSIERLKKLDAMFED 123
Query: 187 LTT------------------------------------VLEPNP---AIGEAAKMCIPT 207
T V++P A+ EA K+ IP
Sbjct: 124 GTIEAYTKKEALKMDKEREKLEKVLGGIKNMNKLPGMMFVIDPKNEEIAVQEAKKLGIPV 183
Query: 208 VGIVDSNCNPNLITYPVPGNDDTPSAIQYYCQVFKTAILKGKKAKQDTLKLLSE 261
V IVD+NC+P++I + +PGNDD AI+ A+ +G A+ L+ +E
Sbjct: 184 VAIVDTNCDPDMIDHVIPGNDDAIRAIRLLTAKIADAVQEGADARNVVLQSGAE 237
>sp|A7HMF2|RS2_FERNB 30S ribosomal protein S2 OS=Fervidobacterium nodosum (strain ATCC
35602 / DSM 5306 / Rt17-B1) GN=rpsB PE=3 SV=1
Length = 259
Score = 109 bits (273), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/225 (29%), Positives = 105/225 (46%), Gaps = 39/225 (17%)
Query: 66 LVKVKDMFDAKVHLGHKIGSLDERMKPYIYGVRQGQIIFDLDQSAELLRDALNFVAHIAY 125
+V +K + +A VH GH+ + +MKPYIYG R+G I DL ++ +L+ +A +FV +A
Sbjct: 3 VVTMKQLLEAGVHFGHRTQRWNPKMKPYIYGARKGIYIIDLQKTVKLIDEAYDFVRDVAS 62
Query: 126 RDGIVLFVGQSAQNSLLIEKTAQDCQEFAHTRFWRQGMFTNSEKLFRAVTRLPDL----- 180
+ G +LFVG Q +++ A+ C F W G+ TN + + + RL +L
Sbjct: 63 KGGTILFVGTKKQAQQVVKNEAERCGGFYVNNRWLGGLLTNFQTIQSRIQRLIELEEMEA 122
Query: 181 ------------VILTNTLTT-------------------VLEPNP---AIGEAAKMCIP 206
L TL V++P A+ EA + IP
Sbjct: 123 NGELDKLPKKEQSKLRKTLEKLRKNLGGLKNMRGLPDVIFVVDPRKEKIAVEEANYLGIP 182
Query: 207 TVGIVDSNCNPNLITYPVPGNDDTPSAIQYYCQVFKTAILKGKKA 251
V +VD+NC+P+ I Y +P NDD AI A L+G++
Sbjct: 183 IVAMVDTNCDPDPIDYVIPSNDDAIRAIALIASKIADAYLEGREG 227
>sp|C6DAI3|RS2_PECCP 30S ribosomal protein S2 OS=Pectobacterium carotovorum subsp.
carotovorum (strain PC1) GN=rpsB PE=3 SV=1
Length = 241
Score = 109 bits (273), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 104/222 (46%), Gaps = 39/222 (17%)
Query: 67 VKVKDMFDAKVHLGHKIGSLDERMKPYIYGVRQGQIIFDLDQSAELLRDALNFVAHIAYR 126
V ++DM A VH GH+ + +MKP+I+G R I +L+++ + DAL ++ IA R
Sbjct: 4 VSMRDMLKAGVHFGHQTRYWNPKMKPFIFGARNKVHIINLEKTVPMFNDALAELSKIASR 63
Query: 127 DGIVLFVGQSAQNSLLIEKTAQDCQEFAHTRFWRQGMFTNSEKLFRAVTRLPDLVI---- 182
G +LFVG S ++ A +C +F W GM TN + + +++ RL DL
Sbjct: 64 KGKILFVGTKRAASEAVKDAANNCDQFFVNHRWLGGMLTNWKTVRQSIKRLKDLETQSQD 123
Query: 183 --------------------LTNTLTTVLE----PNP-----------AIGEAAKMCIPT 207
L N+L + + P+ AI EA + IP
Sbjct: 124 GTFDKLTKKEALMRTRELDKLENSLGGIKDMGGLPDALFVIDADHEHIAIKEANNLGIPV 183
Query: 208 VGIVDSNCNPNLITYPVPGNDDTPSAIQYYCQVFKTAILKGK 249
+VD+N +P+ + Y +PGNDD A+ Y TA+ +G+
Sbjct: 184 FAVVDTNSDPDGVDYIIPGNDDAIRAVSLYLSAVATAVREGR 225
>sp|P49668|RS2_PEDAC 30S ribosomal protein S2 OS=Pediococcus acidilactici GN=rpsB PE=3
SV=1
Length = 261
Score = 109 bits (273), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 107/229 (46%), Gaps = 39/229 (17%)
Query: 65 NLVKVKDMFDAKVHLGHKIGSLDERMKPYIYGVRQGQIIFDLDQSAELLRDALNFVAHIA 124
+++ +K + +A VH GH+ + +MKP+I+ R G I DL ++ +L+ +A NFV +A
Sbjct: 2 SVISMKQLLEAGVHFGHQTRRWNPKMKPFIFTERNGIYIIDLQKTVKLIDNAYNFVKDVA 61
Query: 125 YRDGIVLFVGQSAQNSLLIEKTAQDCQEFAHTRFWRQGMFTNSEKLFRAVTRLPDL---- 180
DG+VLFVG Q IE+ A+ +F W G TN + + + RL DL
Sbjct: 62 ANDGVVLFVGTKKQAQTAIEEEAKRAGQFYVNHRWLGGTLTNWNTIQKRIKRLKDLKKME 121
Query: 181 ------------VILTNTLTTVLEP------------------NP-----AIGEAAKMCI 205
V L N LE +P AI EA K+ I
Sbjct: 122 EDGTFDRLPKKEVALLNKQKDKLEKFLGGIEDMPHIPDVLFVVDPRKEQIAIKEAQKLNI 181
Query: 206 PTVGIVDSNCNPNLITYPVPGNDDTPSAIQYYCQVFKTAILKGKKAKQD 254
P V +VD+N +P+ + +P NDD A++ A+++G++ + D
Sbjct: 182 PVVAMVDTNTDPDQVDVIIPSNDDAIRAVRLITSKMADAVVEGRQGEDD 230
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,606,253
Number of Sequences: 539616
Number of extensions: 3910403
Number of successful extensions: 11624
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 891
Number of HSP's successfully gapped in prelim test: 81
Number of HSP's that attempted gapping in prelim test: 9822
Number of HSP's gapped (non-prelim): 1841
length of query: 268
length of database: 191,569,459
effective HSP length: 115
effective length of query: 153
effective length of database: 129,513,619
effective search space: 19815583707
effective search space used: 19815583707
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)