Query psy13427
Match_columns 268
No_of_seqs 132 out of 1355
Neff 5.6
Searched_HMMs 29240
Date Fri Aug 16 19:12:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13427.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13427hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vqe_B 30S ribosomal protein S 100.0 2.8E-64 9.4E-69 457.1 7.9 187 67-257 5-234 (256)
2 3bbn_B Ribosomal protein S2; s 100.0 7.3E-63 2.5E-67 442.3 16.4 182 66-251 3-227 (231)
3 3bch_A 40S ribosomal protein S 100.0 5.5E-62 1.9E-66 440.3 15.8 197 44-251 24-221 (253)
4 1vi6_A 30S ribosomal protein S 100.0 1.6E-61 5.5E-66 427.2 16.2 180 63-253 7-187 (208)
5 3j20_B 30S ribosomal protein S 100.0 3.3E-61 1.1E-65 423.7 16.9 176 65-251 5-181 (202)
6 3u5c_A 40S ribosomal protein S 100.0 1E-60 3.4E-65 431.8 15.5 186 56-252 2-188 (252)
7 3r8n_B 30S ribosomal protein S 100.0 3.4E-62 1.2E-66 434.7 4.1 174 72-249 1-217 (218)
8 2xzm_B RPS0E; ribosome, transl 100.0 6.5E-60 2.2E-64 425.0 16.5 176 66-251 7-184 (241)
9 2zkq_b 40S ribosomal protein S 100.0 5.1E-60 1.7E-64 435.5 16.0 183 58-251 5-188 (295)
10 3iz6_A 40S ribosomal protein S 100.0 8.3E-59 2.8E-63 426.6 14.7 184 57-251 8-192 (305)
11 2yva_A DNAA initiator-associat 96.0 0.032 1.1E-06 46.4 9.2 138 105-246 15-187 (196)
12 3trj_A Phosphoheptose isomeras 95.8 0.086 2.9E-06 44.8 11.0 114 111-228 30-172 (201)
13 3sho_A Transcriptional regulat 95.6 0.079 2.7E-06 43.5 9.9 73 175-247 85-165 (187)
14 1tk9_A Phosphoheptose isomeras 94.9 0.19 6.6E-06 41.1 10.0 117 111-228 26-165 (188)
15 2xbl_A Phosphoheptose isomeras 94.8 0.44 1.5E-05 39.2 12.1 114 111-228 32-171 (198)
16 1nri_A Hypothetical protein HI 94.8 0.072 2.5E-06 48.3 7.7 143 105-247 49-223 (306)
17 1x92_A APC5045, phosphoheptose 94.8 0.22 7.5E-06 41.4 10.1 115 112-230 30-171 (199)
18 2i2w_A Phosphoheptose isomeras 94.7 0.5 1.7E-05 39.9 12.4 113 112-226 49-184 (212)
19 1vim_A Hypothetical protein AF 94.4 0.13 4.4E-06 43.3 7.9 94 125-229 45-145 (200)
20 3fxa_A SIS domain protein; str 93.8 0.33 1.1E-05 40.4 9.3 53 175-227 90-146 (201)
21 3etn_A Putative phosphosugar i 93.7 0.44 1.5E-05 40.7 10.1 130 112-248 43-193 (220)
22 2a3n_A Putative glucosamine-fr 93.3 0.79 2.7E-05 42.0 11.7 112 127-246 54-174 (355)
23 1m3s_A Hypothetical protein YC 92.3 0.24 8.3E-06 40.6 6.1 120 113-247 27-169 (186)
24 1jeo_A MJ1247, hypothetical pr 91.5 0.74 2.5E-05 37.4 8.1 73 175-247 80-163 (180)
25 2xhz_A KDSD, YRBH, arabinose 5 91.0 0.33 1.1E-05 39.6 5.5 52 175-226 94-149 (183)
26 3cvj_A Putative phosphoheptose 87.9 2.5 8.7E-05 36.1 9.1 102 111-213 26-144 (243)
27 2aml_A SIS domain protein; 469 86.2 13 0.00045 34.1 13.5 95 127-227 50-152 (373)
28 3g68_A Putative phosphosugar i 82.3 8.4 0.00029 35.2 10.2 117 125-247 32-163 (352)
29 3fkj_A Putative phosphosugar i 81.7 8.7 0.0003 35.1 10.1 109 111-227 25-143 (347)
30 3fj1_A Putative phosphosugar i 81.7 21 0.00072 32.4 12.7 101 125-230 41-149 (344)
31 3knz_A Putative sugar binding 81.3 15 0.00051 33.8 11.6 97 125-227 48-149 (366)
32 3eua_A Putative fructose-amino 80.4 5.8 0.0002 35.8 8.3 105 112-225 12-124 (329)
33 3jx9_A Putative phosphoheptose 76.2 4.3 0.00015 34.0 5.6 88 111-212 22-112 (170)
34 2zj3_A Glucosamine--fructose-6 74.3 2.1 7.1E-05 39.6 3.5 72 176-247 106-188 (375)
35 1moq_A Glucosamine 6-phosphate 73.0 6 0.0002 36.2 6.3 73 175-247 97-181 (368)
36 3tbf_A Glucosamine--fructose-6 72.6 11 0.00038 34.7 8.1 96 125-226 52-155 (372)
37 3hba_A Putative phosphosugar i 72.3 49 0.0017 29.8 12.3 87 125-216 40-129 (334)
38 1j5x_A Glucosamine-6-phosphate 71.0 4.3 0.00015 36.8 4.8 99 125-228 50-155 (342)
39 3lft_A Uncharacterized protein 70.3 11 0.00036 32.4 7.0 120 113-241 119-251 (295)
40 2poc_A D-fructose-6- PH, isome 67.6 3.2 0.00011 38.1 3.1 72 176-247 96-178 (367)
41 2xci_A KDO-transferase, 3-deox 61.9 34 0.0012 30.8 8.9 92 111-209 210-307 (374)
42 3r75_A Anthranilate/para-amino 60.6 20 0.00068 35.9 7.6 75 127-211 446-528 (645)
43 3dfz_A SIRC, precorrin-2 dehyd 59.1 58 0.002 28.0 9.5 109 116-241 43-161 (223)
44 3odp_A Putative tagatose-6-pho 57.5 48 0.0016 30.8 9.3 41 176-216 107-149 (393)
45 2qh8_A Uncharacterized protein 57.1 13 0.00045 32.0 5.0 125 114-241 127-258 (302)
46 3s2u_A UDP-N-acetylglucosamine 56.8 24 0.00081 31.8 6.9 91 111-208 14-119 (365)
47 3fro_A GLGA glycogen synthase; 55.6 80 0.0027 27.6 10.1 91 111-210 268-360 (439)
48 1pjq_A CYSG, siroheme synthase 48.2 78 0.0027 29.8 9.2 62 178-242 73-144 (457)
49 3gv0_A Transcriptional regulat 47.4 43 0.0015 28.2 6.7 60 175-242 64-123 (288)
50 2bpl_A Glucosamine--fructose-6 46.7 26 0.00088 34.4 5.8 117 125-247 290-421 (608)
51 3m3p_A Glutamine amido transfe 45.0 48 0.0016 28.8 6.7 79 127-212 3-90 (250)
52 3h5t_A Transcriptional regulat 44.5 1.2E+02 0.0041 26.5 9.4 129 107-243 38-186 (366)
53 3c3j_A Putative tagatose-6-pho 44.2 38 0.0013 31.0 6.2 42 176-217 102-145 (384)
54 2e5f_A Hypothetical protein PH 43.3 22 0.00074 31.8 4.3 111 125-245 29-153 (325)
55 3g1w_A Sugar ABC transporter; 42.1 54 0.0019 27.6 6.5 113 126-244 3-123 (305)
56 3hgt_A HDA1 complex subunit 3; 40.6 79 0.0027 29.0 7.7 105 109-215 107-238 (328)
57 3uow_A GMP synthetase; structu 38.7 86 0.0029 30.5 8.0 80 126-212 6-91 (556)
58 3bbl_A Regulatory protein of L 38.0 1.7E+02 0.0059 24.2 9.7 61 175-243 62-122 (287)
59 3qk7_A Transcriptional regulat 37.8 72 0.0025 26.9 6.6 61 175-243 63-123 (294)
60 3h75_A Periplasmic sugar-bindi 37.2 22 0.00074 31.1 3.2 63 176-245 61-137 (350)
61 2a9v_A GMP synthase; structura 36.5 32 0.0011 28.8 4.1 74 129-211 15-92 (212)
62 3rot_A ABC sugar transporter, 35.9 71 0.0024 26.9 6.3 64 175-244 59-126 (297)
63 4gud_A Imidazole glycerol phos 35.7 43 0.0015 27.5 4.7 73 128-212 3-80 (211)
64 3oy2_A Glycosyltransferase B73 35.2 96 0.0033 27.2 7.2 97 107-209 196-302 (413)
65 3psh_A Protein HI_1472; substr 35.1 17 0.00059 31.9 2.2 32 175-211 82-113 (326)
66 3jy6_A Transcriptional regulat 34.7 60 0.002 27.0 5.5 60 175-243 61-120 (276)
67 3eag_A UDP-N-acetylmuramate:L- 34.6 1.2E+02 0.0041 26.8 7.8 62 177-242 66-131 (326)
68 3egc_A Putative ribose operon 34.2 64 0.0022 27.0 5.7 61 175-243 62-122 (291)
69 4hv4_A UDP-N-acetylmuramate--L 34.1 84 0.0029 29.7 7.0 62 177-242 81-145 (494)
70 3hz7_A Uncharacterized protein 33.7 74 0.0025 23.2 5.2 49 115-163 17-65 (87)
71 1tjy_A Sugar transport protein 33.1 42 0.0014 28.9 4.4 65 175-244 58-123 (316)
72 3m9w_A D-xylose-binding peripl 31.3 50 0.0017 28.1 4.5 62 175-242 56-118 (313)
73 1k68_A Phytochrome response re 31.0 1.4E+02 0.0048 21.1 6.6 82 127-215 2-96 (140)
74 1gpm_A GMP synthetase, XMP ami 30.4 89 0.0031 30.0 6.6 79 127-212 7-87 (525)
75 3l7n_A Putative uncharacterize 30.2 23 0.00079 30.1 2.1 75 130-211 3-91 (236)
76 3tqi_A GMP synthase [glutamine 29.8 43 0.0015 32.3 4.2 79 126-211 9-89 (527)
77 3k4h_A Putative transcriptiona 29.8 1E+02 0.0036 25.5 6.2 61 175-243 67-128 (292)
78 2pln_A HP1043, response regula 29.7 1.4E+02 0.0047 21.5 6.3 77 125-214 16-96 (137)
79 3cs3_A Sugar-binding transcrip 29.3 92 0.0031 25.8 5.8 59 177-243 57-115 (277)
80 1tzb_A Glucose-6-phosphate iso 29.2 29 0.00098 30.7 2.6 48 176-224 78-125 (302)
81 2zxr_A Single-stranded DNA spe 29.0 1.1E+02 0.0037 30.8 7.1 99 112-215 57-162 (666)
82 2qzs_A Glycogen synthase; glyc 28.7 1.2E+02 0.0041 27.4 6.8 92 107-210 304-396 (485)
83 3brq_A HTH-type transcriptiona 28.5 1E+02 0.0035 25.4 6.0 61 175-243 75-136 (296)
84 3o74_A Fructose transport syst 28.3 61 0.0021 26.6 4.4 61 175-242 56-116 (272)
85 2j48_A Two-component sensor ki 28.2 1.3E+02 0.0046 20.3 5.7 80 127-215 1-86 (119)
86 2fep_A Catabolite control prot 28.0 1.1E+02 0.0037 25.6 6.1 60 176-243 71-130 (289)
87 1rzu_A Glycogen synthase 1; gl 27.9 1.1E+02 0.0037 27.7 6.4 91 108-210 304-395 (485)
88 3ga2_A Endonuclease V; alpha-b 27.7 88 0.003 27.7 5.5 56 158-213 85-146 (246)
89 2rgy_A Transcriptional regulat 27.5 1.2E+02 0.0039 25.4 6.1 61 175-243 65-125 (290)
90 3huu_A Transcription regulator 27.4 51 0.0017 28.0 3.9 61 175-243 81-141 (305)
91 1psw_A ADP-heptose LPS heptosy 27.1 1.2E+02 0.004 26.3 6.2 32 174-213 258-289 (348)
92 3d8u_A PURR transcriptional re 26.4 56 0.0019 26.9 3.9 60 175-242 57-116 (275)
93 3lvj_C Sulfurtransferase TUSA; 26.3 1.2E+02 0.004 21.6 5.1 41 116-157 27-67 (82)
94 2r79_A Periplasmic binding pro 26.1 1.9E+02 0.0065 24.5 7.4 32 175-210 57-88 (283)
95 3k9c_A Transcriptional regulat 25.9 99 0.0034 25.9 5.4 60 175-243 64-123 (289)
96 3kke_A LACI family transcripti 25.9 1.1E+02 0.0038 25.8 5.8 59 175-243 69-128 (303)
97 2etv_A Iron(III) ABC transport 25.9 1.6E+02 0.0054 26.1 7.0 38 165-210 87-124 (346)
98 3kht_A Response regulator; PSI 25.8 1.5E+02 0.005 21.6 5.8 82 126-214 4-91 (144)
99 3hn7_A UDP-N-acetylmuramate-L- 25.5 1.7E+02 0.0059 27.8 7.6 62 177-242 80-145 (524)
100 3uw1_A Ribose-5-phosphate isom 25.5 1.7E+02 0.0059 25.5 7.0 75 116-228 22-96 (239)
101 1k66_A Phytochrome response re 24.9 1.4E+02 0.0047 21.5 5.5 84 125-215 4-103 (149)
102 2q8p_A Iron-regulated surface 24.9 1E+02 0.0035 25.6 5.3 31 175-210 58-88 (260)
103 2jjm_A Glycosyl transferase, g 24.9 3.4E+02 0.011 23.4 11.8 99 108-220 224-323 (394)
104 2h3h_A Sugar ABC transporter, 24.8 1.7E+02 0.0058 24.7 6.8 63 176-244 56-119 (313)
105 3gt7_A Sensor protein; structu 24.8 2.1E+02 0.0073 21.1 6.8 82 125-215 5-92 (154)
106 2qvg_A Two component response 24.6 1.4E+02 0.0047 21.6 5.5 83 126-215 6-100 (143)
107 1l7b_A DNA ligase; BRCT, autos 24.6 1.1E+02 0.0039 22.4 4.9 62 126-209 9-70 (92)
108 1i1q_B Anthranilate synthase c 24.2 1.4E+02 0.0048 24.0 5.9 78 129-211 2-83 (192)
109 3cg4_A Response regulator rece 23.9 2E+02 0.0069 20.6 6.4 82 125-215 5-92 (142)
110 2ywb_A GMP synthase [glutamine 23.3 1.3E+02 0.0043 28.7 6.1 76 130-212 2-79 (503)
111 3hhe_A Ribose-5-phosphate isom 23.0 2.2E+02 0.0076 25.1 7.2 68 126-228 40-107 (255)
112 3md9_A Hemin-binding periplasm 23.0 1.9E+02 0.0064 23.9 6.6 32 175-210 57-88 (255)
113 3ksm_A ABC-type sugar transpor 22.9 1.9E+02 0.0065 23.4 6.5 63 176-244 57-121 (276)
114 3l6u_A ABC-type sugar transpor 22.7 79 0.0027 26.3 4.1 63 175-243 62-125 (293)
115 1jdq_A TM006 protein, hypothet 22.6 1.4E+02 0.0046 22.3 5.0 42 115-157 42-83 (98)
116 2pjm_A Ribose-5-phosphate isom 22.6 2.1E+02 0.0073 24.6 6.9 24 126-149 19-42 (226)
117 2x6q_A Trehalose-synthase TRET 22.6 2.3E+02 0.008 24.7 7.5 92 111-210 247-345 (416)
118 2k6g_A Replication factor C su 22.4 2.1E+02 0.0071 21.7 6.1 63 126-209 34-97 (109)
119 3qk7_A Transcriptional regulat 22.2 2.3E+02 0.0078 23.6 7.0 63 175-241 185-258 (294)
120 3h5i_A Response regulator/sens 22.2 2.3E+02 0.0077 20.5 7.2 81 126-215 4-89 (140)
121 3goc_A Endonuclease V; alpha-b 22.0 80 0.0027 27.8 4.1 57 157-213 82-144 (237)
122 2bfw_A GLGA glycogen synthase; 21.8 2.7E+02 0.0094 21.3 7.7 75 127-210 70-145 (200)
123 3egc_A Putative ribose operon 21.7 1.8E+02 0.006 24.1 6.2 61 175-239 184-254 (291)
124 3l49_A ABC sugar (ribose) tran 21.6 85 0.0029 26.0 4.1 123 114-241 112-263 (291)
125 1fy2_A Aspartyl dipeptidase; s 21.6 1.5E+02 0.0052 25.0 5.8 18 194-211 103-120 (229)
126 2iuy_A Avigt4, glycosyltransfe 21.6 2.2E+02 0.0077 24.0 7.0 77 127-210 188-271 (342)
127 3heb_A Response regulator rece 21.5 2.1E+02 0.0073 20.9 6.1 82 127-215 4-100 (152)
128 3tb6_A Arabinose metabolism tr 21.4 1.7E+02 0.0057 24.1 5.9 65 175-243 69-134 (298)
129 4e7p_A Response regulator; DNA 21.1 2.4E+02 0.0082 20.6 6.3 81 128-215 21-105 (150)
130 1qdl_B Protein (anthranilate s 21.0 1.2E+02 0.0041 24.6 4.8 75 130-211 4-84 (195)
131 3i0z_A Putative tagatose-6-pho 20.8 79 0.0027 29.2 4.0 39 176-214 108-148 (389)
132 1jx6_A LUXP protein; protein-l 20.8 1.9E+02 0.0064 24.7 6.3 131 107-243 16-170 (342)
133 3lkv_A Uncharacterized conserv 20.6 1.3E+02 0.0043 26.0 5.2 127 117-251 130-263 (302)
134 4hn9_A Iron complex transport 20.5 1.8E+02 0.006 25.5 6.1 36 166-210 108-143 (335)
135 4gyw_A UDP-N-acetylglucosamine 20.4 2E+02 0.0068 28.6 7.1 106 92-212 523-630 (723)
No 1
>2vqe_B 30S ribosomal protein S2; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.23.15.1 PDB: 1gix_E* 1hnw_B* 1hnx_B* 1hnz_B* 1hr0_B 1ibk_B* 1ibl_B* 1ibm_B 1j5e_B 1jgo_E* 1jgp_E* 1jgq_E* 1ml5_E* 1n32_B* 1n33_B* 1n34_B 1n36_B 1xmo_B* 1xmq_B* 1xnq_B* ...
Probab=100.00 E-value=2.8e-64 Score=457.11 Aligned_cols=187 Identities=29% Similarity=0.540 Sum_probs=176.8
Q ss_pred ccHHHHHhcCceeccccCCCCCCCCCCcccccCCeEEecHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCChhhHHHHHHH
Q psy13427 67 VKVKDMFDAKVHLGHKIGSLDERMKPYIYGVRQGQIIFDLDQSAELLRDALNFVAHIAYRDGIVLFVGQSAQNSLLIEKT 146 (268)
Q Consensus 67 v~l~~Ll~a~vHlGh~~~~~np~M~~yIyg~R~gi~IInL~~T~~~L~~A~~~I~~i~~~~g~ILfV~t~~~~~~~V~~~ 146 (268)
+++++||+||+|+||+++.|||+|+|||||.|+|+|||||++|+++|++|+++|.++++++|+||||||+++++++|+++
T Consensus 5 i~~~~LL~AgvH~Gh~t~~wnpkM~~YIyg~RngihIIdL~kT~~~L~~A~~~i~~~a~~gg~iLfVgTk~~a~~~V~~~ 84 (256)
T 2vqe_B 5 ITVKELLEAGVHFGHERKRWNPKFARYIYAERNGIHIIDLQKTMEELERTFRFIEDLAMRGGTILFVGTKKQAQDIVRME 84 (256)
T ss_dssp -CCCSTTCSSTTCCCBSSSCCGGGSTTEEEEETTEEEECHHHHHHHHHHHHHHHHHHHTTTCCEEEECCSSSSTTTTTTT
T ss_pred ccHHHHHHcCeeeccCcCCCCCccccceecccCCeEEEeHHHHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCceecCCcccCcccchhhhh-------------------------------------------ccccCCCceeee
Q psy13427 147 AQDCQEFAHTRFWRQGMFTNSEKLF-------------------------------------------RAVTRLPDLVIL 183 (268)
Q Consensus 147 A~~~g~~~i~~rW~gG~LTN~~~~~-------------------------------------------~~~~~~Pdlviv 183 (268)
|+++|++|+++||+||+||||.+.. +.+.++||+|||
T Consensus 85 A~~~g~~yv~~RWlgG~LTN~~ti~~~i~~l~~le~~~~~g~f~~l~Kke~~~~~r~~~kL~k~lgGik~m~~~Pdll~V 164 (256)
T 2vqe_B 85 AERAGMPYVNQRWLGGMLTNFKTISQRVHRLEELEALFASPEIEERPKKEQVRLKHELERLQKYLSGFRLLKRLPDAIFV 164 (256)
T ss_dssp TTSSSCCEECSCCCTTTTTTHHHHHHHHHHHHHHHHHTTSTTSSCSCHHHHTTHHHHHHHHHHHSTTGGGCSSCCSEEEE
T ss_pred HHHhCCeeecCeeCCCcccCHHHHHHHHHHHHHHHHHhhcCccccccHHHHHHHHHHHHHHHHhhcCccccccCCCEEEE
Confidence 9999999999999999999998631 234589999999
Q ss_pred ecCCCCCCCCCchHHHhhhhCCCccccccCCCCCCceeeeccCCCCchhHHHHHHHHHHHHHHhhhhhhHhHHH
Q psy13427 184 TNTLTTVLEPNPAIGEAAKMCIPTVGIVDSNCNPNLITYPVPGNDDTPSAIQYYCQVFKTAILKGKKAKQDTLK 257 (268)
Q Consensus 184 ld~~~~~~~d~~aI~EA~~l~IPtIalvDTn~~p~~IdypIP~NddS~~SI~li~~lL~~aIl~gk~~r~~~~~ 257 (268)
+|| .+|++||+||.++||||||+|||||||++|||||||||||.+||.|++|+|++||++|+.+|.+...
T Consensus 165 ~Dp----~~e~~Ai~EA~~l~IPvIaivDTn~dp~~VdypIP~NDds~~sI~Li~~~la~ai~~g~~~r~~~~~ 234 (256)
T 2vqe_B 165 VDP----TKEAIAVREARKLFIPVIALADTDSDPDLVDYIIPGNDDAIRSIQLILSRAVDLIIQARGGVVEPSP 234 (256)
T ss_dssp SCT----TTTHHHHHHHHHTTCCCEECCCTTSCGGGCSEECCSCSSCHHHHHHHHHHHHHHHHTTTSCCCCSCT
T ss_pred eCC----ccchHHHHHHHHcCCCEEEEecCCCCchhcceEeecCCchHHHHHHHHHHHHHHHHHHHhhhhccch
Confidence 996 7899999999999999999999999999999999999999999999999999999999998876543
No 2
>3bbn_B Ribosomal protein S2; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=100.00 E-value=7.3e-63 Score=442.26 Aligned_cols=182 Identities=30% Similarity=0.527 Sum_probs=173.1
Q ss_pred cccHHHHHhcCceeccccCCCCCCCCCCcccccCCeEEecHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCChhhHHHHHH
Q psy13427 66 LVKVKDMFDAKVHLGHKIGSLDERMKPYIYGVRQGQIIFDLDQSAELLRDALNFVAHIAYRDGIVLFVGQSAQNSLLIEK 145 (268)
Q Consensus 66 lv~l~~Ll~a~vHlGh~~~~~np~M~~yIyg~R~gi~IInL~~T~~~L~~A~~~I~~i~~~~g~ILfV~t~~~~~~~V~~ 145 (268)
.+++++|++||+|+||+++.|||+|+|||||.|+|+|||||++|+++|++|++++.++++++|+||||||+++++++|++
T Consensus 3 ~i~~~~lL~agvH~Gh~t~~wnpkM~~yIy~~RngihIIdL~kT~~~L~~A~~~i~~~~~~~~~iLfVgTk~~~~~~V~~ 82 (231)
T 3bbn_B 3 NINLEEMMEAGVHFGHGTRKWNPRMSPYISAKCKGIHIINLTRTARFLSEACDLVFDASSRGKQFLIVGTKNKAADSVAR 82 (231)
T ss_dssp SCSSHHHHHTSSSSCCCSSCCCGGGGGGEEEEETTEEEECHHHHHHHTHHHHHHSHHHHTTTCCEEEECCCTTTHHHHHH
T ss_pred cCCHHHHHHhCeEecCCcCcCCcccccceecccCCcEEeeHHHHHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCceecCCcccCcccchhhh------h-------------------------------------ccccCCCceee
Q psy13427 146 TAQDCQEFAHTRFWRQGMFTNSEKL------F-------------------------------------RAVTRLPDLVI 182 (268)
Q Consensus 146 ~A~~~g~~~i~~rW~gG~LTN~~~~------~-------------------------------------~~~~~~Pdlvi 182 (268)
+|+++|++|+++||+||+||||.+. | +.+.++||+||
T Consensus 83 ~A~~~g~~yv~~rWlgG~LTN~~ti~~~i~~~~~l~~~~~~g~~~~l~Kke~~~~~r~~~kl~k~lgGik~m~~~Pdll~ 162 (231)
T 3bbn_B 83 AAIRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRMEQTAGRLARLPKRDAAVVKRQLSHLQTYLGGIKYMTGLPDIVI 162 (231)
T ss_dssp HHHHHTCEECCSSCCSCSSSCHHHHHHHHHHHHHHHHSTTSTTTTTSCHHHHHHHHHHHHHHTTSTTSTTSCCSCCSEEE
T ss_pred HHHHhCCccccccccCCCCcCHHHHHHHHHHHHHHHHHHhcCccccCCHHHHHHHHHHHHHHHHhhhcccccccCCCEEE
Confidence 9999999999999999999999863 1 12456899999
Q ss_pred eecCCCCCCCCCchHHHhhhhCCCccccccCCCCCCceeeeccCCCCchhHHHHHHHHHHHHHHhhhhh
Q psy13427 183 LTNTLTTVLEPNPAIGEAAKMCIPTVGIVDSNCNPNLITYPVPGNDDTPSAIQYYCQVFKTAILKGKKA 251 (268)
Q Consensus 183 vld~~~~~~~d~~aI~EA~~l~IPtIalvDTn~~p~~IdypIP~NddS~~SI~li~~lL~~aIl~gk~~ 251 (268)
|+|| .+|++||+||.++||||||+|||||||+.|||||||||||.+||.|++++|++||++|+..
T Consensus 163 v~Dp----~~e~~ai~EA~~l~IPvIaivDTn~dp~~Vdy~IP~Ndds~~si~li~~~la~ai~~g~~~ 227 (231)
T 3bbn_B 163 IVDQ----QEEYTALRECITLGIPTICLIDTNCNPDLADISIPANDDAIASIRLILTKLVFAICEGRSS 227 (231)
T ss_dssp ESCT----TTTHHHHHHHHTTTCCEEECCCSSSCCSSCSEECCCCSSSHHHHHHHHHHHHHHHHHTSSC
T ss_pred EeCC----ccccHHHHHHHHhCCCEEEEecCCCCccceeEEeeCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 9996 7899999999999999999999999999999999999999999999999999999999753
No 3
>3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein, acetylation, cytoplasm, phosphorylation, polymorphism; 2.15A {Homo sapiens}
Probab=100.00 E-value=5.5e-62 Score=440.26 Aligned_cols=197 Identities=20% Similarity=0.267 Sum_probs=171.5
Q ss_pred CCCCCCCCCCCCCCCccccccccccHHHHHhcCceeccccCCCCCCCCCCccccc-CCeEEecHHHHHHHHHHHHHHHHH
Q psy13427 44 DTSQEPEVPNPLRYHDYFQVRNLVKVKDMFDAKVHLGHKIGSLDERMKPYIYGVR-QGQIIFDLDQSAELLRDALNFVAH 122 (268)
Q Consensus 44 ~~~~~~~~~~~l~~~d~f~~~~lv~l~~Ll~a~vHlGh~~~~~np~M~~yIyg~R-~gi~IInL~~T~~~L~~A~~~I~~ 122 (268)
-|.+....+.+....|.+.+++ +++++||+||+|+||+ .|||+|++||||.| +|+|||||++|+++|++|+++|.
T Consensus 24 ~~~~~~~~~~~~~~~~~l~~k~-~~v~~LL~AgvH~Gh~--~wnpkM~~YIyg~R~nGIhIIdL~kT~~~L~~A~~~i~- 99 (253)
T 3bch_A 24 LYFQGHMASGSSGALDVLQMKE-EDVLKFLAAGTHLGGT--NLDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIV- 99 (253)
T ss_dssp ------------------CCCH-HHHHHHHHHTTTBCCS--CCCGGGGGGEEEECTTSCEEECHHHHHHHHHHHHHHHH-
T ss_pred cchhhhhhhccccCCccccCcH-HHHHHHHHcCEEecCC--cCCccccccEEeecCCCcEEEeHHHHHHHHHHHHHHHH-
Confidence 4567778889999999998876 8999999999999995 59999999999999 89999999999999999999999
Q ss_pred HHhCCCeEEEEeCChhhHHHHHHHHHHcCCceecCCcccCcccchhhhhccccCCCceeeeecCCCCCCCCCchHHHhhh
Q psy13427 123 IAYRDGIVLFVGQSAQNSLLIEKTAQDCQEFAHTRFWRQGMFTNSEKLFRAVTRLPDLVILTNTLTTVLEPNPAIGEAAK 202 (268)
Q Consensus 123 i~~~~g~ILfV~t~~~~~~~V~~~A~~~g~~~i~~rW~gG~LTN~~~~~~~~~~~Pdlvivld~~~~~~~d~~aI~EA~~ 202 (268)
.++++|+||||||+++++++|+++|+++|++|+++||+||+||||.+ ..+++||+|||+|| ..|++||+||++
T Consensus 100 ~~~~~~~iLfVgTk~~aq~~V~~~A~~~g~~yv~~RWlgG~LTN~~~---~~f~~PdlliV~Dp----~~e~~AI~EA~~ 172 (253)
T 3bch_A 100 AIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQ---AAFREPRLLVVTDP----RADHQPLTEASY 172 (253)
T ss_dssp TCSSGGGEEEEECSHHHHHHHHHHHHHHCCEEEESCCCTTTTTCCSC---STTCSCSEEEESCT----TTTHHHHHHHHH
T ss_pred HHhCCCeEEEEeCCHHHHHHHHHHHHHhCCeeecceecCCcccCccc---cccCCCCEEEEECC----CccchHHHHHHH
Confidence 56899999999999999999999999999999999999999999997 35789999999996 789999999999
Q ss_pred hCCCccccccCCCCCCceeeeccCCCCchhHHHHHHHHHHHHHHhhhhh
Q psy13427 203 MCIPTVGIVDSNCNPNLITYPVPGNDDTPSAIQYYCQVFKTAILKGKKA 251 (268)
Q Consensus 203 l~IPtIalvDTn~~p~~IdypIP~NddS~~SI~li~~lL~~aIl~gk~~ 251 (268)
+||||||||||||||++|||||||||||.+||.|++|+|++||++|+..
T Consensus 173 lgIPvIalvDTn~dp~~VDy~IP~Ndds~~SI~Li~~lla~aIl~grg~ 221 (253)
T 3bch_A 173 VNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVLRMRGT 221 (253)
T ss_dssp TTCCEEEEECTTCCCTTCSEEEESCCSSHHHHHHHHHHHHHHHHHHHTS
T ss_pred hCCCEEEEEcCCCCcccCceEeecCCcchhhHHHHHHHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999999874
No 4
>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A
Probab=100.00 E-value=1.6e-61 Score=427.19 Aligned_cols=180 Identities=23% Similarity=0.313 Sum_probs=171.9
Q ss_pred ccccccHHHHHhcCceeccccCCCCCCCCCCccccc-CCeEEecHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCChhhHH
Q psy13427 63 VRNLVKVKDMFDAKVHLGHKIGSLDERMKPYIYGVR-QGQIIFDLDQSAELLRDALNFVAHIAYRDGIVLFVGQSAQNSL 141 (268)
Q Consensus 63 ~~~lv~l~~Ll~a~vHlGh~~~~~np~M~~yIyg~R-~gi~IInL~~T~~~L~~A~~~I~~i~~~~g~ILfV~t~~~~~~ 141 (268)
++.++++++||+||+|+||+. |||+|++||||.| +|+|||||++|+++|++|+++|.++ ++|+||||||++++++
T Consensus 7 ~~~~~~~~~lL~AgvH~Gh~~--~npkM~~YIy~~R~~gihIIdL~kT~~~L~~A~~~i~~i--~~~~iLfVgTk~~~~~ 82 (208)
T 1vi6_A 7 YEYLVPPDDYLAAGVHIGTQI--KTGDMKKFIFKVRQDGLYVLDIRKLDERIRVAAKFLSRY--EPSKILLVAARQYAHK 82 (208)
T ss_dssp CCCSSCHHHHHHHTTTBCCSC--CCTTTGGGEEEECTTSCEEECHHHHHHHHHHHHHHHTTS--CGGGEEEEECSGGGHH
T ss_pred chhhhhHHHHHhcCeEEcCCc--CCCCccceEEeeeCCCcEEEcHHHHHHHHHHHHHHHHhc--CCCEEEEEeCCHHHHH
Confidence 356799999999999999997 4999999999999 7999999999999999999999999 8999999999999999
Q ss_pred HHHHHHHHcCCceecCCcccCcccchhhhhccccCCCceeeeecCCCCCCCCCchHHHhhhhCCCccccccCCCCCCcee
Q psy13427 142 LIEKTAQDCQEFAHTRFWRQGMFTNSEKLFRAVTRLPDLVILTNTLTTVLEPNPAIGEAAKMCIPTVGIVDSNCNPNLIT 221 (268)
Q Consensus 142 ~V~~~A~~~g~~~i~~rW~gG~LTN~~~~~~~~~~~Pdlvivld~~~~~~~d~~aI~EA~~l~IPtIalvDTn~~p~~Id 221 (268)
+|+++|+++|++|+++||+||+||||.+ ..+++||++||+|| .+|++||+||+++||||||+|||||||++||
T Consensus 83 ~V~~~A~~~g~~~v~~rwlgG~LTN~~~---~~f~~PdlliV~Dp----~~e~~ai~EA~~l~IPvIalvDTn~~p~~Vd 155 (208)
T 1vi6_A 83 PVQMFSKVVGSDYIVGRFIPGTLTNPML---SEYREPEVVFVNDP----AIDKQAVSEATAVGIPVVALCDSNNSSADVD 155 (208)
T ss_dssp HHHHHHHHHCCEEEESSCCTTTTTCTTS---TTCCCCSEEEESCT----TTTHHHHHHHHHTTCCEEEEECTTCCCTTCS
T ss_pred HHHHHHHHhCCeeecCEECCCcccChhh---HhhCCCCEEEEECC----CcchhHHHHHHHhCCCEEEEeCCCCCccccC
Confidence 9999999999999999999999999996 34789999999996 7899999999999999999999999999999
Q ss_pred eeccCCCCchhHHHHHHHHHHHHHHhhhhhhH
Q psy13427 222 YPVPGNDDTPSAIQYYCQVFKTAILKGKKAKQ 253 (268)
Q Consensus 222 ypIP~NddS~~SI~li~~lL~~aIl~gk~~r~ 253 (268)
|||||||||.+||+|++|+|++||++|++...
T Consensus 156 ~~IP~Ndds~~SI~Li~~~la~ail~grg~~~ 187 (208)
T 1vi6_A 156 LVIPTNNKGRRALAIVYWLLAREIAKIRGQDF 187 (208)
T ss_dssp EEEESCCSCHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred EEEeCCCCchhHHHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999998754
No 5
>3j20_B 30S ribosomal protein S2P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=3.3e-61 Score=423.68 Aligned_cols=176 Identities=24% Similarity=0.344 Sum_probs=169.1
Q ss_pred ccccHHHHHhcCceeccccCCCCCCCCCCccccc-CCeEEecHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCChhhHHHH
Q psy13427 65 NLVKVKDMFDAKVHLGHKIGSLDERMKPYIYGVR-QGQIIFDLDQSAELLRDALNFVAHIAYRDGIVLFVGQSAQNSLLI 143 (268)
Q Consensus 65 ~lv~l~~Ll~a~vHlGh~~~~~np~M~~yIyg~R-~gi~IInL~~T~~~L~~A~~~I~~i~~~~g~ILfV~t~~~~~~~V 143 (268)
.++++++||+||+|+||+. |||+|++||||+| +|+|||||++||++|++|+++|..+ ++|+||||||+++++++|
T Consensus 5 ~~v~~~~lL~AgvH~Gh~~--~np~M~~YIy~~r~~Gi~IIdL~kT~~~L~~A~~~i~~~--~~~~ilfV~tk~~~~~~V 80 (202)
T 3j20_B 5 YLVPLDQYLAAGVHIGTQQ--KTKDMKKFIYRVRQDGLYVLDVRKTDERLKVAGKFLAKF--EPQSILAVSVRLYGQKPV 80 (202)
T ss_dssp CTTHHHHHHHHTCSBCCSC--CCTGGGGGEEEECTTSCEEECHHHHHHHHHHHHHHHHHS--CSSCEEEECCCTTTHHHH
T ss_pred ccccHHHHHhcCccccCCc--CCCCccccEeeeeCCCCEEECHHHHHHHHHHHHHHHHhh--CCCeEEEEecChHHHHHH
Confidence 5799999999999999997 6999999999999 7999999999999999999999986 789999999999999999
Q ss_pred HHHHHHcCCceecCCcccCcccchhhhhccccCCCceeeeecCCCCCCCCCchHHHhhhhCCCccccccCCCCCCceeee
Q psy13427 144 EKTAQDCQEFAHTRFWRQGMFTNSEKLFRAVTRLPDLVILTNTLTTVLEPNPAIGEAAKMCIPTVGIVDSNCNPNLITYP 223 (268)
Q Consensus 144 ~~~A~~~g~~~i~~rW~gG~LTN~~~~~~~~~~~Pdlvivld~~~~~~~d~~aI~EA~~l~IPtIalvDTn~~p~~Idyp 223 (268)
+++|+++|++|+++||+||+||||.+ ..+++||++||+|| ..|++||+||+++||||||+|||||||++||||
T Consensus 81 ~k~A~~~g~~~v~~rw~gG~lTN~~~---~~~~~Pdllvv~Dp----~~d~~ai~EA~~l~IP~Ial~DTn~~p~~Vd~~ 153 (202)
T 3j20_B 81 KKFGEVTGARAIPGRFLPGTMTNPAV---KNFFEPDVLIVTDP----RADHQAMREAVEIGIPIVALVDTENLLSYVDLA 153 (202)
T ss_dssp HHHHHHHSCCCCCSSCCSSSSSCSSS---SSCCCCSEEEESCT----TTSHHHHHHHHHHTCCEEEEECTTCCCTTCCEE
T ss_pred HHHHHHHCCceeCceecCCCcccHhH---HhccCCCeEEEeCC----ccchHHHHHHHHcCCCEEEEEcCCCCccccCEE
Confidence 99999999999999999999999986 45789999999996 799999999999999999999999999999999
Q ss_pred ccCCCCchhHHHHHHHHHHHHHHhhhhh
Q psy13427 224 VPGNDDTPSAIQYYCQVFKTAILKGKKA 251 (268)
Q Consensus 224 IP~NddS~~SI~li~~lL~~aIl~gk~~ 251 (268)
|||||||.+||.|++|+|+++|++|++.
T Consensus 154 IP~Ndds~~Si~Li~~~la~avl~~rg~ 181 (202)
T 3j20_B 154 IPTNNKGRKALALIYWILAREILYNRGE 181 (202)
T ss_dssp EECCCSSHHHHHHHHHHHHHHHHHHHTS
T ss_pred EeCCCCcHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999998875
No 6
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B
Probab=100.00 E-value=1e-60 Score=431.85 Aligned_cols=186 Identities=20% Similarity=0.299 Sum_probs=176.2
Q ss_pred CCCccccccccccHHHHHhcCceeccccCCCCCCCCCCccccc-CCeEEecHHHHHHHHHHHHHHHHHHHhCCCeEEEEe
Q psy13427 56 RYHDYFQVRNLVKVKDMFDAKVHLGHKIGSLDERMKPYIYGVR-QGQIIFDLDQSAELLRDALNFVAHIAYRDGIVLFVG 134 (268)
Q Consensus 56 ~~~d~f~~~~lv~l~~Ll~a~vHlGh~~~~~np~M~~yIyg~R-~gi~IInL~~T~~~L~~A~~~I~~i~~~~g~ILfV~ 134 (268)
+.||.+.+++ +++++||+||+||||+ .|||+|++||||+| +|+|||||++|+++|++|+++|..+ .++|+|||||
T Consensus 2 ~~~~~l~~~e-~~v~~lL~AGvH~G~~--~wnpkM~~YIy~~R~nGIhIIdL~kT~~~L~~A~~~i~~i-~~~~~vlfVg 77 (252)
T 3u5c_A 2 SLPATFDLTP-EDAQLLLAANTHLGAR--NVQVHQEPYVFNARPDGVHVINVGKTWEKLVLAARIIAAI-PNPEDVVAIS 77 (252)
T ss_dssp CCCSSCSCCH-HHHHHHHHHTTTEECS--SCCCTTCCCEEEEETTTEEEECHHHHHHHHHHHHHHHTTS-SSGGGEEEEE
T ss_pred CcchhcccCH-HHHHHHHHCCeeccCC--cCCcCchhheecccCCCcEEecHHHHHHHHHHHHHHHHHH-hcCCEEEEEe
Confidence 4588888776 9999999999999986 49999999999999 7999999999999999999999997 6899999999
Q ss_pred CChhhHHHHHHHHHHcCCceecCCcccCcccchhhhhccccCCCceeeeecCCCCCCCCCchHHHhhhhCCCccccccCC
Q psy13427 135 QSAQNSLLIEKTAQDCQEFAHTRFWRQGMFTNSEKLFRAVTRLPDLVILTNTLTTVLEPNPAIGEAAKMCIPTVGIVDSN 214 (268)
Q Consensus 135 t~~~~~~~V~~~A~~~g~~~i~~rW~gG~LTN~~~~~~~~~~~Pdlvivld~~~~~~~d~~aI~EA~~l~IPtIalvDTn 214 (268)
|+++++++|+++|+++|++|+++||+||+||||.+ ..+++||+|||+|| ..|++||+||+++|||||||||||
T Consensus 78 Tk~~~q~~V~k~A~~~g~~~v~~rwlgGtLTN~~t---~~f~~PdllvV~Dp----~~d~~ai~EA~~l~IP~Ial~DTn 150 (252)
T 3u5c_A 78 SRTFGQRAVLKFAAHTGATPIAGRFTPGSFTNYIT---RSFKEPRLVIVTDP----RSDAQAIKEASYVNIPVIALTDLD 150 (252)
T ss_dssp CSHHHHHHHHHHHHHSSCEEEESCCCTTSSSCTTS---TTCCCCSEEEESCT----TTTHHHHHHHHTTTCCEEEEECTT
T ss_pred CCcHHHHHHHHHHHHhCCceecCcccCCcccChhh---hhccCCceEEEeCC----ccchHHHHHHHHcCCCEEEEEcCC
Confidence 99999999999999999999999999999999998 45799999999996 799999999999999999999999
Q ss_pred CCCCceeeeccCCCCchhHHHHHHHHHHHHHHhhhhhh
Q psy13427 215 CNPNLITYPVPGNDDTPSAIQYYCQVFKTAILKGKKAK 252 (268)
Q Consensus 215 ~~p~~IdypIP~NddS~~SI~li~~lL~~aIl~gk~~r 252 (268)
|+|++|||||||||||.+||.|++|+|+++|++|++.-
T Consensus 151 ~~p~~VD~~IP~Ndds~~SI~Li~~~La~aVl~~rg~i 188 (252)
T 3u5c_A 151 SPSEFVDVAIPCNNRGKHSIGLIWYLLAREVLRLRGAL 188 (252)
T ss_dssp CCCTTCSSEEECCTTSTTHHHHHHHHHHHHHHSSSSSC
T ss_pred CCcccCCEEEeCCCCCcchHHHHHHHHHHHHHHhcCCc
Confidence 99999999999999999999999999999999987654
No 7
>3r8n_B 30S ribosomal protein S2; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_B 3fih_B* 3j18_B* 2wwl_B 3oar_B 3oaq_B 3ofb_B 3ofa_B 3ofp_B 3ofx_B 3ofy_B 3ofo_B 3r8o_B 4a2i_B 4gd1_B 4gd2_B 3i1m_B 1vs7_B* 3e1a_B 3e1c_B ...
Probab=100.00 E-value=3.4e-62 Score=434.72 Aligned_cols=174 Identities=32% Similarity=0.592 Sum_probs=166.0
Q ss_pred HHhcCceeccccCCCCCCCCCCcccccCCeEEecHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCChhhHHHHHHHHHHcC
Q psy13427 72 MFDAKVHLGHKIGSLDERMKPYIYGVRQGQIIFDLDQSAELLRDALNFVAHIAYRDGIVLFVGQSAQNSLLIEKTAQDCQ 151 (268)
Q Consensus 72 Ll~a~vHlGh~~~~~np~M~~yIyg~R~gi~IInL~~T~~~L~~A~~~I~~i~~~~g~ILfV~t~~~~~~~V~~~A~~~g 151 (268)
||+||+|+||+++.|||+|+|||||.|+|+|||||++|+++|++|+++|.++++++|+||||||+++++++|+++|+++|
T Consensus 1 lL~AgvH~Gh~~~~wnp~M~~yIy~~R~gihIIdL~kT~~~L~~A~~~i~~~~~~~~~iLfVgTk~~~~~~V~~~A~~~g 80 (218)
T 3r8n_B 1 MLKAGVHFGHQTRYWNPKMKPFIFGARNKVHIINLEKTVPMFNEALAELNKIASRKGKILFVGTKRAASEAVKDAALSCD 80 (218)
T ss_dssp CCCCSSCSCCCSSCCCGGGGGGBCCCTTSSCCBCTTTSGGGTTTHHHHHHHHHHTTCCCCEECCCTTTTTTTTTHHHHSS
T ss_pred CccccccccCCCCCCCCCcccccccccCCceEEcHHHHHHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHHcC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceecCCcccCcccchhhhh-------------------------------------------ccccCCCceeeeecCCC
Q psy13427 152 EFAHTRFWRQGMFTNSEKLF-------------------------------------------RAVTRLPDLVILTNTLT 188 (268)
Q Consensus 152 ~~~i~~rW~gG~LTN~~~~~-------------------------------------------~~~~~~Pdlvivld~~~ 188 (268)
++|+++||+||+||||.+.. +.+.++||+|||+||
T Consensus 81 ~~yv~~rWlgG~LTN~~ti~~~i~~l~~le~~~~~~~f~~l~Kke~~~~~re~~kl~k~lgGik~m~~~Pdllvv~Dp-- 158 (218)
T 3r8n_B 81 QFFVNHRWLGGMLTNWKTVRQSIKRLKDLETQSQDGTFDKLTKKEALMRTRELEKLENSLGGIKDMGGLPDALFVIDA-- 158 (218)
T ss_dssp CCEECSSCCSSSSTTTTTTHHHHHHHHHHHTTTSSSSCSSSCTTTTTTTHHHHHHHHSSSSSSSSCSSCCCSCEEEET--
T ss_pred CeeECCccCCCCccCHHHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHHHHHHhhccccccccCCCeEEecCc--
Confidence 99999999999999998631 123479999999996
Q ss_pred CCCCCCchHHHhhhhCCCccccccCCCCCCceeeeccCCCCchhHHHHHHHHHHHHHHhhh
Q psy13427 189 TVLEPNPAIGEAAKMCIPTVGIVDSNCNPNLITYPVPGNDDTPSAIQYYCQVFKTAILKGK 249 (268)
Q Consensus 189 ~~~~d~~aI~EA~~l~IPtIalvDTn~~p~~IdypIP~NddS~~SI~li~~lL~~aIl~gk 249 (268)
.+|++||+||+++||||||+|||||||++|||||||||||.+||.|++++|++||++|+
T Consensus 159 --~~e~~ai~Ea~~l~IP~IalvDTn~~p~~Vdy~IP~Ndds~~si~Li~~~la~ai~~g~ 217 (218)
T 3r8n_B 159 --DHEHIAIKEANNLGIPVFAIVDTNSDPDGVDFVIPGNDDAIRAVTLYLGAVAATVREGR 217 (218)
T ss_dssp --GGGHHHHHHHHHHTCCCEEECCSSSCCSSCSEECCSCSSSHHHHHHHHHHHHHHHSCSC
T ss_pred --ccccHHHHHHHHhCCCEEEEEeCcCCCcccceEeecCCccHHHHHHHHHHHHHHHHhhc
Confidence 78999999999999999999999999999999999999999999999999999999996
No 8
>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_B
Probab=100.00 E-value=6.5e-60 Score=425.04 Aligned_cols=176 Identities=18% Similarity=0.233 Sum_probs=168.6
Q ss_pred cccHHHHHhcCceeccccCCCCCCCCCCccccc-CCeEEecHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCChhhHHHHH
Q psy13427 66 LVKVKDMFDAKVHLGHKIGSLDERMKPYIYGVR-QGQIIFDLDQSAELLRDALNFVAHIAYRDGIVLFVGQSAQNSLLIE 144 (268)
Q Consensus 66 lv~l~~Ll~a~vHlGh~~~~~np~M~~yIyg~R-~gi~IInL~~T~~~L~~A~~~I~~i~~~~g~ILfV~t~~~~~~~V~ 144 (268)
.+++++||+||+|+||+ .|||+|++||||.| +|+|||||++|+++|++|+++|.+ +.++|+||||||+++++++|+
T Consensus 7 ~~~~~~lL~AgvH~G~~--~wnpkM~~YIy~~R~nGihIIdL~kT~~~L~~A~~~i~~-i~~~~~iLfVgtk~~~~~~V~ 83 (241)
T 2xzm_B 7 QDDIKRLLASNCHQATI--NLNNQMKRYISHKGVNGIHYINIEETWQKIKLAARVIAA-VQHPEDVMVVCSRIYGQRAAI 83 (241)
T ss_dssp HHHHHHHHHTTTTEECS--CCCGGGTTTEEEECSSSCEEECHHHHHHHHHHHHHHHHH-CSSGGGEEEECCSHHHHHHHH
T ss_pred HHHHHHHHhcCeEeccC--cCCCCCcccEeeeeCCCcEEEeHHHHHHHHHHHHHHHHH-HhCCCeEEEEECCHHHHHHHH
Confidence 48999999999999994 59999999999999 899999999999999999999999 478999999999999999999
Q ss_pred HHHHHcCCcee-cCCcccCcccchhhhhccccCCCceeeeecCCCCCCCCCchHHHhhhhCCCccccccCCCCCCceeee
Q psy13427 145 KTAQDCQEFAH-TRFWRQGMFTNSEKLFRAVTRLPDLVILTNTLTTVLEPNPAIGEAAKMCIPTVGIVDSNCNPNLITYP 223 (268)
Q Consensus 145 ~~A~~~g~~~i-~~rW~gG~LTN~~~~~~~~~~~Pdlvivld~~~~~~~d~~aI~EA~~l~IPtIalvDTn~~p~~Idyp 223 (268)
++|+++|++|+ ++||+||+||||.+ +.+++||+|||+|| .+|++||+||+++||||||||||||||++||||
T Consensus 84 ~~A~~~g~~yv~~~RWlgG~LTN~~t---~~~~~PdlliV~Dp----~~e~~ai~EA~~l~IPvIalvDTn~~p~~VDy~ 156 (241)
T 2xzm_B 84 KFAGYTHCKSTSSSRWTPGTLTNYQT---LKYEEPRVLIVTDP----RSDFQAIKEASYVNIPVIALCDSDSPLAYVDVV 156 (241)
T ss_dssp HHHHHHTCBCCCCSSCCTTTTTCTTC---TTCCCCSEEEESCT----TTTHHHHHHHTTTTCCEEECCCSSSCCTTCCEE
T ss_pred HHHHHhCCEEeccccccCCcccCccc---cccCCCCEEEEECC----CcchHHHHHHHHhCCCEEEEecCCCCcccccEE
Confidence 99999999999 99999999999998 56899999999996 789999999999999999999999999999999
Q ss_pred ccCCCCchhHHHHHHHHHHHHHHhhhhh
Q psy13427 224 VPGNDDTPSAIQYYCQVFKTAILKGKKA 251 (268)
Q Consensus 224 IP~NddS~~SI~li~~lL~~aIl~gk~~ 251 (268)
|||||||.+||.|++|+|+++|++|++.
T Consensus 157 IP~Ndds~~SI~Li~~~la~ail~~rg~ 184 (241)
T 2xzm_B 157 IPCNNRSTESISMIYWMIAREVKILRGE 184 (241)
T ss_dssp CCSCCSSHHHHHHHHHHHHHHHHHHHTS
T ss_pred EeCCCcccchHHHHHHHHHHHHHHhhCc
Confidence 9999999999999999999999998864
No 9
>2zkq_b 40S ribosomal protein SA; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=5.1e-60 Score=435.48 Aligned_cols=183 Identities=20% Similarity=0.306 Sum_probs=167.1
Q ss_pred CccccccccccHHHHHhcCceeccccCCCCCCCCCCccccc-CCeEEecHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCC
Q psy13427 58 HDYFQVRNLVKVKDMFDAKVHLGHKIGSLDERMKPYIYGVR-QGQIIFDLDQSAELLRDALNFVAHIAYRDGIVLFVGQS 136 (268)
Q Consensus 58 ~d~f~~~~lv~l~~Ll~a~vHlGh~~~~~np~M~~yIyg~R-~gi~IInL~~T~~~L~~A~~~I~~i~~~~g~ILfV~t~ 136 (268)
+|++.+++ +++++||+||+||||+ .|||+|++||||.| +|+|||||++|+++|++|+++|. .+.++|+||||||+
T Consensus 5 ~~~l~~~~-~~~~~LL~AgvH~Gh~--~wnpkM~~YIyg~R~nGIhIIdL~kT~~~L~~A~~~i~-~i~~~~~ILfVgTk 80 (295)
T 2zkq_b 5 LDVLQMKE-EDVLKFLAAGTHLGGT--NLDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIV-AIENPADVSVISSR 80 (295)
T ss_dssp ---------CCHHHHHHHTTTBCCS--CCCTGGGGGEEEECTTSCEEECHHHHHHHHHHHHHHHH-HSSCGGGEEEEECS
T ss_pred cccccccH-HHHHHHHhcCEEecCC--cCCccccceEEeecCCCCEEEeHHHHHHHHHHHHHHHH-HHhCCCeEEEEeCc
Confidence 67777776 9999999999999995 59999999999999 89999999999999999999999 55899999999999
Q ss_pred hhhHHHHHHHHHHcCCceecCCcccCcccchhhhhccccCCCceeeeecCCCCCCCCCchHHHhhhhCCCccccccCCCC
Q psy13427 137 AQNSLLIEKTAQDCQEFAHTRFWRQGMFTNSEKLFRAVTRLPDLVILTNTLTTVLEPNPAIGEAAKMCIPTVGIVDSNCN 216 (268)
Q Consensus 137 ~~~~~~V~~~A~~~g~~~i~~rW~gG~LTN~~~~~~~~~~~Pdlvivld~~~~~~~d~~aI~EA~~l~IPtIalvDTn~~ 216 (268)
++++++|+++|+++|++|+++||+||+||||.+. .+++||+|||+|| ..|++||+||+++|||||||||||||
T Consensus 81 ~~aq~~V~k~A~~~g~~yv~~RWlgG~LTN~~t~---~f~~PdlliV~Dp----~~e~~AI~EA~~lgIPvIalvDTn~d 153 (295)
T 2zkq_b 81 NTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQA---AFREPRLLVVTDP----RADHQPLTEASYVNLPTIALCNTDSP 153 (295)
T ss_dssp HHHHHHHHHHHHHHCCEEEESSCCCC-CCCTTCS---SCCCCSEEEESCT----TTTHHHHHHHHHHTCCEEEEECTTCC
T ss_pred HHHHHHHHHHHHHhCCceecceEecccccCcccc---cccCCCeEEEeCC----CcchhHHHHHHHhCCCEEEEecCCCC
Confidence 9999999999999999999999999999999973 5789999999996 78999999999999999999999999
Q ss_pred CCceeeeccCCCCchhHHHHHHHHHHHHHHhhhhh
Q psy13427 217 PNLITYPVPGNDDTPSAIQYYCQVFKTAILKGKKA 251 (268)
Q Consensus 217 p~~IdypIP~NddS~~SI~li~~lL~~aIl~gk~~ 251 (268)
|++|||||||||||.+||+|++++|+++|++|+.+
T Consensus 154 p~~VDy~IP~Ndds~~SI~Li~~lla~aIl~~rg~ 188 (295)
T 2zkq_b 154 LRYVDIAIPCNNKGAHSVGLMWWMLAREVLRMRGT 188 (295)
T ss_dssp CTTCSEEEESCSSCHHHHHHHHHHHHHHHHHCCSS
T ss_pred cccCCEEEeCCCCccchHHHHHHHHHHHHHHhcCc
Confidence 99999999999999999999999999999998764
No 10
>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=8.3e-59 Score=426.64 Aligned_cols=184 Identities=24% Similarity=0.292 Sum_probs=173.0
Q ss_pred CCccccccccccHHHHHhcCceeccccCCCCCCCCCCcccccC-CeEEecHHHHHHHHHHHHHHHHHHHhCCCeEEEEeC
Q psy13427 57 YHDYFQVRNLVKVKDMFDAKVHLGHKIGSLDERMKPYIYGVRQ-GQIIFDLDQSAELLRDALNFVAHIAYRDGIVLFVGQ 135 (268)
Q Consensus 57 ~~d~f~~~~lv~l~~Ll~a~vHlGh~~~~~np~M~~yIyg~R~-gi~IInL~~T~~~L~~A~~~I~~i~~~~g~ILfV~t 135 (268)
.+|.+.+++ +++++||+||+||||+. |||+|++||||+|+ |+|||||++|+++|++|+++|..+ .++++||||||
T Consensus 8 ~~~~l~~ke-~dv~kLLaAGvH~Gt~~--wNpkM~pYIyg~RndGIhIIdL~kT~e~L~~Aa~~I~~i-~~~~~ILfVgT 83 (305)
T 3iz6_A 8 AARALSQRE-QDIQMMLAADVHLGTKN--CDFQMERYVYKRRTDGIYIINLGKTWEKLQLAARVIVAI-ENPQDIIVQSA 83 (305)
T ss_dssp SCCCCSSCC-SCCCCHHHHHHSSCBSC--CCTTTTTSCCEEETTTEEECCHHHHHHHHHHHHHHHHHT-TSSCCEEEECC
T ss_pred ccccccccH-HHHHHHHHcCeeccCCc--CCcCccccEEeeecCCceEECHHHHHHHHHHHHHHHHHH-hCCCeEEEEeC
Confidence 456665544 78999999999999764 99999999999997 999999999999999999999997 78899999999
Q ss_pred ChhhHHHHHHHHHHcCCceecCCcccCcccchhhhhccccCCCceeeeecCCCCCCCCCchHHHhhhhCCCccccccCCC
Q psy13427 136 SAQNSLLIEKTAQDCQEFAHTRFWRQGMFTNSEKLFRAVTRLPDLVILTNTLTTVLEPNPAIGEAAKMCIPTVGIVDSNC 215 (268)
Q Consensus 136 ~~~~~~~V~~~A~~~g~~~i~~rW~gG~LTN~~~~~~~~~~~Pdlvivld~~~~~~~d~~aI~EA~~l~IPtIalvDTn~ 215 (268)
+++++++|+++|+++|++|+++||+||+||||.+. .+++||+|||+|| ..|++||+||+++||||||||||||
T Consensus 84 k~~aq~aV~k~A~~tG~~yV~~RWlgGtLTN~~t~---~f~ePdllvV~Dp----~~d~qAI~EA~~lnIPtIALvDTns 156 (305)
T 3iz6_A 84 RPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQT---SFSEPRLLILTDP----RTDHQPIKESALGNIPTIAFCDTDS 156 (305)
T ss_dssp SHHHHHHHHHHHHHHTCEEECSCCCTTTTTTTTTS---CSSCCSEEEESCT----TTTHHHHHHHHHHTCCEEEEECTTS
T ss_pred cHHHHHHHHHHHHHhCCccccCcccCCcccCcccc---cccCCceeEEeCc----ccchHHHHHHHHcCCCEEEEEcCCC
Confidence 99999999999999999999999999999999983 5799999999996 7999999999999999999999999
Q ss_pred CCCceeeeccCCCCchhHHHHHHHHHHHHHHhhhhh
Q psy13427 216 NPNLITYPVPGNDDTPSAIQYYCQVFKTAILKGKKA 251 (268)
Q Consensus 216 ~p~~IdypIP~NddS~~SI~li~~lL~~aIl~gk~~ 251 (268)
+|++|||||||||||.+||.|++|+|+++|++|+..
T Consensus 157 dp~~VDy~IP~NDds~rSI~Li~~lLA~aVl~~rgt 192 (305)
T 3iz6_A 157 PMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMRGT 192 (305)
T ss_dssp CGGGCSEEEESCCSSTHHHHHHHHHHHHHHHHTTSS
T ss_pred CccccceEEeCCCCCccHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999998765
No 11
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=96.04 E-value=0.032 Score=46.39 Aligned_cols=138 Identities=12% Similarity=0.073 Sum_probs=73.9
Q ss_pred cHHHHHHHHH----HHHHHHHHHHhCCCeEEEEeCChhhHHHHHHHHHH---------cCCceecCCcccC---cc----
Q psy13427 105 DLDQSAELLR----DALNFVAHIAYRDGIVLFVGQSAQNSLLIEKTAQD---------CQEFAHTRFWRQG---MF---- 164 (268)
Q Consensus 105 nL~~T~~~L~----~A~~~I~~i~~~~g~ILfV~t~~~~~~~V~~~A~~---------~g~~~i~~rW~gG---~L---- 164 (268)
++.+|...+. .++.-+.....+.++|.++|...... +...++.+ .|...+ +.++ ++
T Consensus 15 ~l~~t~~~l~~~i~~~~~~~~~~i~~a~~I~i~G~G~S~~-~A~~~~~~l~~~~~~~~~g~~~~---~~~~~~~~~~a~~ 90 (196)
T 2yva_A 15 TQIAAAEALPDAISRAAMTLVQSLLNGNKILCCGNGTSAA-NAQHFAASMINRFETERPSLPAI---ALNTDNVVLTAIA 90 (196)
T ss_dssp HHHHHHHHSHHHHHHHHHHHHHHHHTTCCEEEEESTHHHH-HHHHHHHHHHTCSSSCCCCCCEE---ESSCCHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHcCCEEEEEeCchhhH-HHHHHHHHHhccccccCCCCceE---eecCchHHHHHHh
Confidence 4556665443 46666666667789999999986442 22334432 222111 1111 00
Q ss_pred --cchhhhh----ccccCCCceeeeecCCCCCCCCCchHHHhhhhCCCccccccCCCCC-------CceeeeccCCCCch
Q psy13427 165 --TNSEKLF----RAVTRLPDLVILTNTLTTVLEPNPAIGEAAKMCIPTVGIVDSNCNP-------NLITYPVPGNDDTP 231 (268)
Q Consensus 165 --TN~~~~~----~~~~~~Pdlvivld~~~~~~~d~~aI~EA~~l~IPtIalvDTn~~p-------~~IdypIP~NddS~ 231 (268)
......+ ......-|++|++..-....+-..+++.|++.|++||+|.+...+| ..+.+.+|.+..+.
T Consensus 91 ~d~~~~~~~~~~~~~~~~~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~~s~la~~~~~ad~~l~~~~~~~~~ 170 (196)
T 2yva_A 91 NDRLHDEVYAKQVRALGHAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGPQDVEIRIPSHRSAR 170 (196)
T ss_dssp TSTTGGGHHHHHHHHHCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECTTCHHHHTTCCTTSEEEECSCSCHHH
T ss_pred cCCCHHHHHHHHHHhcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCchhhhcccCCCEEEEeCCCChhH
Confidence 0111000 1224567888888732211122468888999999999999975432 33455666665444
Q ss_pred h--HHHHHHHHHHHHHH
Q psy13427 232 S--AIQYYCQVFKTAIL 246 (268)
Q Consensus 232 ~--SI~li~~lL~~aIl 246 (268)
. +.-+++..|...+.
T Consensus 171 ~~~~~l~~~~~L~~~~~ 187 (196)
T 2yva_A 171 IQEMHMLTVNCLCDLID 187 (196)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 3 33444444444443
No 12
>3trj_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 2.80A {Francisella tularensis subsp}
Probab=95.78 E-value=0.086 Score=44.77 Aligned_cols=114 Identities=18% Similarity=0.206 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEeCChhhHHHHHHHHHH---------cCCceecCCcccC---ccc---c---hhhhh-
Q psy13427 111 ELLRDALNFVAHIAYRDGIVLFVGQSAQNSLLIEKTAQD---------CQEFAHTRFWRQG---MFT---N---SEKLF- 171 (268)
Q Consensus 111 ~~L~~A~~~I~~i~~~~g~ILfV~t~~~~~~~V~~~A~~---------~g~~~i~~rW~gG---~LT---N---~~~~~- 171 (268)
+.+.+|+..+..-..++++|.++|....+. +...++.+ .|...+ +.+| ++| | +...+
T Consensus 30 ~~i~~a~~~i~~al~~~~~I~i~G~G~S~~-~A~~~~~~l~~~~~~~r~g~~~~---~~~~d~~~~~a~~~d~~~~~~~~ 105 (201)
T 3trj_A 30 PAIAQAAKAMVSCLENGGKVLVCGNGSSGV-IAQHFTSKLLNHFEMERPPLPAI---ALTGDVATITAVGNHYGFSQIFA 105 (201)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEESTHHHH-HHHHHHHHHHC-------CCCEE---ETTSCHHHHHHHHHHTCGGGTTH
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCcHhHH-HHHHHHHHhcCccCCCCCCCceE---EccCChHHHHHhccCCCHHHHHH
Confidence 357778888887778899999999887543 22223333 232211 1111 011 0 00001
Q ss_pred ---ccccCCCceeeeecCCCCCCCCCchHHHhhhhCCCccccccCCCCC--C-----ceeeeccCCC
Q psy13427 172 ---RAVTRLPDLVILTNTLTTVLEPNPAIGEAAKMCIPTVGIVDSNCNP--N-----LITYPVPGND 228 (268)
Q Consensus 172 ---~~~~~~Pdlvivld~~~~~~~d~~aI~EA~~l~IPtIalvDTn~~p--~-----~IdypIP~Nd 228 (268)
......-|++|++..-....+--.+++.|++.|+|+|+|++...+| . .+.+.+|.+.
T Consensus 106 ~~l~~~~~~~Dvvi~iS~SG~t~~~~~~~~~ak~~g~~vi~iT~~~~s~la~~a~~~d~~l~~~~~~ 172 (201)
T 3trj_A 106 KQVAALGNEDDILLVITTSGDSENILSAVEEAHDLEMKVIALTGGSGGALQNMYNTDDIELRVPSDN 172 (201)
T ss_dssp HHHHHHCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEEETTCCGGGGTCCTTCEEEEESCCC
T ss_pred HHHHhhCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCcEEEEECCCCCHHHHhhccCCEEEEeCCCC
Confidence 1224667888888632111122468889999999999999865443 2 3445555544
No 13
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=95.64 E-value=0.079 Score=43.51 Aligned_cols=73 Identities=19% Similarity=0.226 Sum_probs=46.2
Q ss_pred cCCCceeeeecCCCCCCCCCchHHHhhhhCCCccccccCCCCC----CceeeeccCCC----CchhHHHHHHHHHHHHHH
Q psy13427 175 TRLPDLVILTNTLTTVLEPNPAIGEAAKMCIPTVGIVDSNCNP----NLITYPVPGND----DTPSAIQYYCQVFKTAIL 246 (268)
Q Consensus 175 ~~~Pdlvivld~~~~~~~d~~aI~EA~~l~IPtIalvDTn~~p----~~IdypIP~Nd----dS~~SI~li~~lL~~aIl 246 (268)
...-|++|++..-....+-..+++.|++.|+|+|+|.|...+| ..+.+.+|... .|..+.-+++.+|...+.
T Consensus 85 ~~~~d~~i~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~l~~~~~~~~~~~S~~~~~~l~d~L~~~~~ 164 (187)
T 3sho_A 85 LRPTDLMIGVSVWRYLRDTVAALAGAAERGVPTMALTDSSVSPPARIADHVLVAATRGVGHSLSPVGLIAVVNLLLAEIA 164 (187)
T ss_dssp CCTTEEEEEECCSSCCHHHHHHHHHHHHTTCCEEEEESCTTSHHHHHCSEEEECCCCCSSSSCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCCEEEEeCCCCCcchhhCcEEEEecCCCCcccccHhHHHHHHHHHHHHHH
Confidence 4456888887631111112367788999999999999875554 33455555543 345566666777766665
Q ss_pred h
Q psy13427 247 K 247 (268)
Q Consensus 247 ~ 247 (268)
.
T Consensus 165 ~ 165 (187)
T 3sho_A 165 V 165 (187)
T ss_dssp H
T ss_pred H
Confidence 4
No 14
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3
Probab=94.90 E-value=0.19 Score=41.07 Aligned_cols=117 Identities=12% Similarity=0.137 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEeCChhhHHHHHHHHHHc-CCceec--C---Cccc---Ccccch----------hhhh
Q psy13427 111 ELLRDALNFVAHIAYRDGIVLFVGQSAQNSLLIEKTAQDC-QEFAHT--R---FWRQ---GMFTNS----------EKLF 171 (268)
Q Consensus 111 ~~L~~A~~~I~~i~~~~g~ILfV~t~~~~~~~V~~~A~~~-g~~~i~--~---rW~g---G~LTN~----------~~~~ 171 (268)
+.+.+++..+.....+.++|.++|...... +...++... ..+... + ...+ +.+|.. ....
T Consensus 26 ~~i~~~~~~i~~~l~~~~~I~i~G~G~S~~-~a~~~~~~l~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 104 (188)
T 1tk9_A 26 GQIAKVGELLCECLKKGGKILICGNGGSAA-DAQHFAAELSGRYKKERKALAGIALTTDTSALSAIGNDYGFEFVFSRQV 104 (188)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEESTHHHH-HHHHHHHHHHSCSSSCCCCCCEEESSCCHHHHHHHHHHTCGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCcHhHH-HHHHHHHHHhhhhccCCCCCceEeccCCchhHhhhhcCCCHHHHHHHHH
Confidence 567778888777667889999999986542 223344321 101000 0 1111 111100 0001
Q ss_pred ccccCCCceeeeecCCCCCCCCCchHHHhhhhCCCccccccCCCCC----CceeeeccCCC
Q psy13427 172 RAVTRLPDLVILTNTLTTVLEPNPAIGEAAKMCIPTVGIVDSNCNP----NLITYPVPGND 228 (268)
Q Consensus 172 ~~~~~~Pdlvivld~~~~~~~d~~aI~EA~~l~IPtIalvDTn~~p----~~IdypIP~Nd 228 (268)
......-|++|++..-....+-..+++.|++.|.|+|+|++...+| ..+.+.+|+.+
T Consensus 105 ~~~~~~~Dvvi~iS~sG~t~~~~~~~~~ak~~g~~vi~iT~~~~s~L~~~ad~~l~~~~~~ 165 (188)
T 1tk9_A 105 EALGNEKDVLIGISTSGKSPNVLEALKKAKELNMLCLGLSGKGGGMMNKLCDHNLVVPSDD 165 (188)
T ss_dssp HHHCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEEEGGGTTHHHHCSEEEEESCSC
T ss_pred HHhCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCcchHHcCCEEEEeCCCC
Confidence 1224567888887732111122467888999999999999875554 23445556554
No 15
>2xbl_A Phosphoheptose isomerase; capsule; HET: M7P PGE PG4; 1.62A {Burkholderia pseudomallei} PDB: 2x3y_A
Probab=94.82 E-value=0.44 Score=39.18 Aligned_cols=114 Identities=18% Similarity=0.126 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEeCChhhHHHHHHHHHH---------cCCceecCCccc---Ccccchh----------
Q psy13427 111 ELLRDALNFVAHIAYRDGIVLFVGQSAQNSLLIEKTAQD---------CQEFAHTRFWRQ---GMFTNSE---------- 168 (268)
Q Consensus 111 ~~L~~A~~~I~~i~~~~g~ILfV~t~~~~~~~V~~~A~~---------~g~~~i~~rW~g---G~LTN~~---------- 168 (268)
+.+.+++..+.....+.++|.++|...... +...++.. .|... ...+ +.++...
T Consensus 32 ~~i~~~~~~i~~~i~~~~~I~i~G~G~S~~-~A~~~~~~l~~~~~~~~~g~~~---~~~~~d~~~~~~~~~~~~~~~~~~ 107 (198)
T 2xbl_A 32 ATVRKVADACIASIAQGGKVLLAGNGGSAA-DAQHIAGEFVSRFAFDRPGLPA---VALTTDTSILTAIGNDYGYEKLFS 107 (198)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEECSTHHHH-HHHHHHHHHHSCSSSCCCCCCE---EETTCCHHHHHHHHHHHCGGGTTH
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEeCcHhhH-HHHHHHHHHHhhhccCCCCCce---EEecCChHHHHHhhccCCHHHHHH
Confidence 456777777776667889999999986443 22233322 12111 1111 0111000
Q ss_pred hhhccccCCCceeeeecCCCCCCCCCchHHHhhhhCCCccccccCCCCC----CceeeeccCCC
Q psy13427 169 KLFRAVTRLPDLVILTNTLTTVLEPNPAIGEAAKMCIPTVGIVDSNCNP----NLITYPVPGND 228 (268)
Q Consensus 169 ~~~~~~~~~Pdlvivld~~~~~~~d~~aI~EA~~l~IPtIalvDTn~~p----~~IdypIP~Nd 228 (268)
.........-|++|++..-....+-..+++.|++.|.|+|+|+|...+| ..+.+.+|+++
T Consensus 108 ~~~~~~~~~~d~vI~iS~SG~t~~~~~~~~~ak~~g~~vI~IT~~~~s~L~~~ad~~l~~~~~~ 171 (198)
T 2xbl_A 108 RQVQALGNEGDVLIGYSTSGKSPNILAAFREAKAKGMTCVGFTGNRGGEMRELCDLLLEVPSAD 171 (198)
T ss_dssp HHHHHHCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECSCCCTHHHHCSEEEECSCSS
T ss_pred HHHHhhCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCCcHHHhCCEEEEeCCCc
Confidence 0011224567888887732111122467888999999999999875554 23455566654
No 16
>1nri_A Hypothetical protein HI0754; structural genomics, haemophilus influ PSI, protein structure initiative, midwest center for struc genomics; 1.90A {Haemophilus influenzae} SCOP: c.80.1.3
Probab=94.81 E-value=0.072 Score=48.32 Aligned_cols=143 Identities=8% Similarity=0.060 Sum_probs=80.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCChhhHHHHH---HHHHHcCC--ceecCCcccCccc---------ch---
Q psy13427 105 DLDQSAELLRDALNFVAHIAYRDGIVLFVGQSAQNSLLIE---KTAQDCQE--FAHTRFWRQGMFT---------NS--- 167 (268)
Q Consensus 105 nL~~T~~~L~~A~~~I~~i~~~~g~ILfV~t~~~~~~~V~---~~A~~~g~--~~i~~rW~gG~LT---------N~--- 167 (268)
.++.|...+..++.-+.....++++|.|+|....+.-... ......|. ..+.+-..+|.-. .+
T Consensus 49 ai~~t~~~i~~~i~~i~~~l~~a~rI~~~G~G~S~~lA~~~a~~~~~~~g~~~~~~~~l~~~g~~a~~~a~e~~ed~~~~ 128 (306)
T 1nri_A 49 AIESCLPQISLAVEQIVQAFQQGGRLIYIGAGTSGRLGVLDASECPPTFGVSTEMVKGIIAGGECAIRHPVEGAEDNTKA 128 (306)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCEEEEESHHHHHHHHHHHHHHHHHHCCCTTSEEEEETTCTHHHHSCCTTGGGCTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCEEEEEeccHhHHHHHHHHHhcccccCCCHHHHHHHHhcchHHHhhhhhcccCcHHH
Confidence 3567777787888888877788999999998875543222 12222232 1111111233111 11
Q ss_pred -hhhhc-cccCCCceeeeecCCCCCCCCCchHHHhhhhCCCccccccCCCCC--CceeeeccCC--C---------Cchh
Q psy13427 168 -EKLFR-AVTRLPDLVILTNTLTTVLEPNPAIGEAAKMCIPTVGIVDSNCNP--NLITYPVPGN--D---------DTPS 232 (268)
Q Consensus 168 -~~~~~-~~~~~Pdlvivld~~~~~~~d~~aI~EA~~l~IPtIalvDTn~~p--~~IdypIP~N--d---------dS~~ 232 (268)
..... .....-|++|++..-....+--.+++.|+..|.+||+|.+...+| ...|+.|... . +|..
T Consensus 129 ~~~~l~~~~l~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~~IaIT~~~~S~La~~AD~~I~~~~g~E~~~~st~~~s~t 208 (306)
T 1nri_A 129 VLNDLQSIHFSKNDVLVGIAASGRTPYVIAGLQYAKSLGALTISIASNPKSEMAEIADIAIETIVGPEILTGSSRLKSGT 208 (306)
T ss_dssp HHHHHHHTTCCTTSEEEEECTTSCCHHHHHHHHHHHHHTCEEEEEESSTTCHHHHHSSEEEECCCCSCSSTTCTTTHHHH
T ss_pred HHHHHHhcCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCCCChHHHhCCEEEEcCCCCccccCcccchhHH
Confidence 01011 124567888887731111122468889999999999998876544 2344444332 1 2334
Q ss_pred HHHHHHHHHHHHHHh
Q psy13427 233 AIQYYCQVFKTAILK 247 (268)
Q Consensus 233 SI~li~~lL~~aIl~ 247 (268)
+..+++.+|..++..
T Consensus 209 a~~~vl~~L~~~~~~ 223 (306)
T 1nri_A 209 AQKMVLNMLTTASMI 223 (306)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 555777888777664
No 17
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=94.77 E-value=0.22 Score=41.36 Aligned_cols=115 Identities=14% Similarity=0.110 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEeCChhhHHHHHHHHHHc---------CCceecCCcccC---ccc------chhhhh--
Q psy13427 112 LLRDALNFVAHIAYRDGIVLFVGQSAQNSLLIEKTAQDC---------QEFAHTRFWRQG---MFT------NSEKLF-- 171 (268)
Q Consensus 112 ~L~~A~~~I~~i~~~~g~ILfV~t~~~~~~~V~~~A~~~---------g~~~i~~rW~gG---~LT------N~~~~~-- 171 (268)
.+.+++..+.....+.++|.|+|...... +...++.+. |...+ ...+ .++ +....+
T Consensus 30 ~i~~~~~~i~~~i~~a~~I~i~G~G~S~~-~A~~~~~~l~~~~~~~~~g~~~~---~~~~~~~~~~~~~~d~~~~~~~~~ 105 (199)
T 1x92_A 30 YIEQASLVMVNALLNEGKILSCGNGGSAG-DAQHFSSELLNRFERERPSLPAV---ALTTDSSTITSIANDYSYNEVFSK 105 (199)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEECSTHHHH-HHHHHHHHHHTCSSSCCCCCCEE---ETTCCHHHHHHHHHHTCGGGTTHH
T ss_pred HHHHHHHHHHHHHHCCCEEEEEcCchhHH-HHHHHHHHHhcCcccCCCCCceE---ecCCChhHHHHhhcCccHHHHHHH
Confidence 34556666667667889999999986542 233344433 21111 1110 011 000000
Q ss_pred --ccccCCCceeeeecCCCCCCCCCchHHHhhhhCCCccccccCCCCC--Cc---eeeeccCCCCc
Q psy13427 172 --RAVTRLPDLVILTNTLTTVLEPNPAIGEAAKMCIPTVGIVDSNCNP--NL---ITYPVPGNDDT 230 (268)
Q Consensus 172 --~~~~~~Pdlvivld~~~~~~~d~~aI~EA~~l~IPtIalvDTn~~p--~~---IdypIP~NddS 230 (268)
......-|++|++..-....+-..+++.|++.|+|||+|.+...+| .. .|+.|......
T Consensus 106 ~~~~~~~~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~~s~La~~~~~ad~~l~~~~~~ 171 (199)
T 1x92_A 106 QIRALGQPGDVLLAISTSGNSANVIQAIQAAHDREMLVVALTGRDGGGMASLLLPEDVEIRVPSKI 171 (199)
T ss_dssp HHHHHCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHCCTTCEEEECSCSC
T ss_pred HHHhCCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCcHHhccccCCEEEEeCCCc
Confidence 0224567888888732111112468888999999999999876544 23 45555444333
No 18
>2i2w_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 1.95A {Escherichia coli} PDB: 2i22_A 1x94_A
Probab=94.70 E-value=0.5 Score=39.91 Aligned_cols=113 Identities=17% Similarity=0.086 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEeCChhhHHHHHHHH----HH-----cCCceecCCcccCcccch----------hhhhc
Q psy13427 112 LLRDALNFVAHIAYRDGIVLFVGQSAQNSLLIEKTA----QD-----CQEFAHTRFWRQGMFTNS----------EKLFR 172 (268)
Q Consensus 112 ~L~~A~~~I~~i~~~~g~ILfV~t~~~~~~~V~~~A----~~-----~g~~~i~~rW~gG~LTN~----------~~~~~ 172 (268)
.+.+++..+.....+.++|.|+|...... +...++ .+ .|.....-. -++.+|-. .....
T Consensus 49 ~i~~~~~~i~~~l~~~~~I~i~G~G~S~~-~A~~~a~~l~~~~~~~~~g~~~~~~~-d~~~~~~~~~~~~~~~~~~~~~~ 126 (212)
T 2i2w_A 49 AIQRAAVLLADSFKAGGKVLSCGNGGSHC-DAMHFAEELTGRYRENRPGYPAIAIS-DVSHISCVGNDFGFNDIFSRYVE 126 (212)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEESTHHHH-HHHHHHHHHHHHHCTTSSSCSEEECC-CTTCGGGGSCCCSCSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHHHHHHHHhhhcccCCCCeEEecC-ChHHhhHhhccCCHHHHHHHHHH
Confidence 45666666666557788999999986443 111223 11 222111100 12222210 00001
Q ss_pred cccCCCceeeeecCCCCCCCCCchHHHhhhhCCCccccccCCCCC--Cc--eeeeccC
Q psy13427 173 AVTRLPDLVILTNTLTTVLEPNPAIGEAAKMCIPTVGIVDSNCNP--NL--ITYPVPG 226 (268)
Q Consensus 173 ~~~~~Pdlvivld~~~~~~~d~~aI~EA~~l~IPtIalvDTn~~p--~~--IdypIP~ 226 (268)
.....-|++|++..-....+--.++++|+..|.|||+|+|...+| +. +.+.+|.
T Consensus 127 ~~~~~~DvvI~iS~SG~t~~~i~~~~~ak~~G~~vIaIT~~~~s~La~~aD~~l~~~~ 184 (212)
T 2i2w_A 127 AVGREGDVLLGISTSGNSANVIKAIAAAREKGMKVITLTGKDGGKMAGTADIEIRVPH 184 (212)
T ss_dssp HHCCTTCEEEEECSSSCCHHHHHHHHHHHHHTCEEEEEEETTCGGGTTCSSEEEEECC
T ss_pred hcCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCeEEEEECCCCCchHHhCCEEEEcCC
Confidence 224567888888742211122468889999999999999875433 23 4444555
No 19
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Probab=94.38 E-value=0.13 Score=43.28 Aligned_cols=94 Identities=9% Similarity=-0.026 Sum_probs=50.9
Q ss_pred hCCCeEEEEeCChhhHHHHHHHHHH---cCCceecCCcccCcccchhhhhccccCCCceeeeecCCCCCCCCCchHHHhh
Q psy13427 125 YRDGIVLFVGQSAQNSLLIEKTAQD---CQEFAHTRFWRQGMFTNSEKLFRAVTRLPDLVILTNTLTTVLEPNPAIGEAA 201 (268)
Q Consensus 125 ~~~g~ILfV~t~~~~~~~V~~~A~~---~g~~~i~~rW~gG~LTN~~~~~~~~~~~Pdlvivld~~~~~~~d~~aI~EA~ 201 (268)
.+.++|.|+|...... +.+.++.+ .|.... +.+...+ .....-|++|++.--....+--.+++.|+
T Consensus 45 ~~a~~I~i~G~G~S~~-~A~~~~~~l~~~g~~~~---~~~~~~~-------~~~~~~DvvI~iS~SG~t~~~i~~~~~ak 113 (200)
T 1vim_A 45 DSARSIFVIGAGRSGY-IAKAFAMRLMHLGYTVY---VVGETVT-------PRITDQDVLVGISGSGETTSVVNISKKAK 113 (200)
T ss_dssp HHSSCEEEECSHHHHH-HHHHHHHHHHHTTCCEE---ETTSTTC-------CCCCTTCEEEEECSSSCCHHHHHHHHHHH
T ss_pred hcCCEEEEEEecHHHH-HHHHHHHHHHhcCCeEE---EeCCccc-------cCCCCCCEEEEEeCCCCcHHHHHHHHHHH
Confidence 3456899999875432 22333333 343211 1111111 12345688888773111111235788889
Q ss_pred hhCCCccccccCCCCC----CceeeeccCCCC
Q psy13427 202 KMCIPTVGIVDSNCNP----NLITYPVPGNDD 229 (268)
Q Consensus 202 ~l~IPtIalvDTn~~p----~~IdypIP~Ndd 229 (268)
+.|+|||+|.+...+| ..+.+.+|..+.
T Consensus 114 ~~g~~vI~IT~~~~s~La~~ad~~l~~~~~~~ 145 (200)
T 1vim_A 114 DIGSKLVAVTGKRDSSLAKMADVVMVVKGKMK 145 (200)
T ss_dssp HHTCEEEEEESCTTSHHHHHCSEEEECCSSCT
T ss_pred HCCCeEEEEECCCCChHHHhCCEEEEECCccc
Confidence 9999999999876544 234455565543
No 20
>3fxa_A SIS domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str}
Probab=93.84 E-value=0.33 Score=40.41 Aligned_cols=53 Identities=17% Similarity=0.136 Sum_probs=34.3
Q ss_pred cCCCceeeeecCCCCCCCCCchHHHhhhhCCCccccccCCCCC----CceeeeccCC
Q psy13427 175 TRLPDLVILTNTLTTVLEPNPAIGEAAKMCIPTVGIVDSNCNP----NLITYPVPGN 227 (268)
Q Consensus 175 ~~~Pdlvivld~~~~~~~d~~aI~EA~~l~IPtIalvDTn~~p----~~IdypIP~N 227 (268)
...-|++|++..-....+-..+++.|++.|.|+|+|.+...+| ..+.+.+|..
T Consensus 90 ~~~~dvvI~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~l~~~~~ 146 (201)
T 3fxa_A 90 LQKEDILILISKGGNTGELLNLIPACKTKGSTLIGVTENPDSVIAKEADIFFPVSVS 146 (201)
T ss_dssp CCTTCEEEEECSSSCCHHHHTTHHHHHHHTCEEEEEESCTTSHHHHHCSEEEECCCS
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEECCCCChhHHhCCEEEEcCCC
Confidence 3456888887632111112367889999999999999876555 3345555654
No 21
>3etn_A Putative phosphosugar isomerase involved in capsu formation; YP_209877.1; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343}
Probab=93.75 E-value=0.44 Score=40.74 Aligned_cols=130 Identities=10% Similarity=0.111 Sum_probs=67.8
Q ss_pred HHHHHHHHHHH-HHhCCCeEEEEeCChhhHHHHHHHHH---HcCCceecCCccc-CcccchhhhhccccCCCceeeeecC
Q psy13427 112 LLRDALNFVAH-IAYRDGIVLFVGQSAQNSLLIEKTAQ---DCQEFAHTRFWRQ-GMFTNSEKLFRAVTRLPDLVILTNT 186 (268)
Q Consensus 112 ~L~~A~~~I~~-i~~~~g~ILfV~t~~~~~~~V~~~A~---~~g~~~i~~rW~g-G~LTN~~~~~~~~~~~Pdlvivld~ 186 (268)
.+.+|+..|.. ...+.++|.|+|...... +.+.++. +.|.... +.+ +.+..... .....-|++|++..
T Consensus 43 ~i~~~~~~i~~~a~~~a~~I~i~G~G~S~~-~A~~~~~~l~~lg~~~~---~~~~~~~~~~~~---~~~~~~DlvI~iS~ 115 (220)
T 3etn_A 43 AYEKAVELIVEQIHRKKGKLVTSGMGKAGQ-IAMNIATTFCSTGIPSV---FLHPSEAQHGDL---GILQENDLLLLISN 115 (220)
T ss_dssp HHHHHHHHHHHHTTTTCCCEEEECSHHHHH-HHHHHHHHHHHTTCCEE---ECCTTGGGBTGG---GGCCTTCEEEEECS
T ss_pred HHHHHHHHHHhHhhccCCEEEEEEecHHHH-HHHHHHHHHHhcCCcEE---EeCCHHHHHhhh---ccCCCCCEEEEEcC
Confidence 45566666665 333478899999876432 2222222 3443211 111 11111110 22445678888763
Q ss_pred CCCCCCCCchHHHhhh--hCCCccccccCCCCC----CceeeeccCCCC----------chhHHHHHHHHHHHHHHhh
Q psy13427 187 LTTVLEPNPAIGEAAK--MCIPTVGIVDSNCNP----NLITYPVPGNDD----------TPSAIQYYCQVFKTAILKG 248 (268)
Q Consensus 187 ~~~~~~d~~aI~EA~~--l~IPtIalvDTn~~p----~~IdypIP~Ndd----------S~~SI~li~~lL~~aIl~g 248 (268)
-....+--.++++|+. .|.++|+|.|...+| ..+.+.+|.... |..+.-+++.+|...+..-
T Consensus 116 SG~t~~~i~~~~~ak~~~~Ga~vI~IT~~~~s~La~~aD~~l~~~~~~e~~~~~~~~~~S~~~~l~lld~L~~~l~~~ 193 (220)
T 3etn_A 116 SGKTREIVELTQLAHNLNPGLKFIVITGNPDSPLASESDVCLSTGHPAEVCTLGMTPTTSTTVMTVIGDILVVQTMKR 193 (220)
T ss_dssp SSCCHHHHHHHHHHHHHCTTCEEEEEESCTTSHHHHHSSEEEECCCCCCCSTTSCSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhcCCCCeEEEEECCCCChhHHhCCEEEEcCCCcccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 2111112367888999 999999999875554 334444554332 2234455555555555543
No 22
>2a3n_A Putative glucosamine-fructose-6-phosphate aminotr; structural genomics, joint center for structural genomics; HET: MSE; 1.23A {Salmonella typhimurium}
Probab=93.33 E-value=0.79 Score=42.01 Aligned_cols=112 Identities=12% Similarity=0.054 Sum_probs=58.5
Q ss_pred CCeEEEEeCChhhH--HHHHHHHHH-cCCceecCCcccCcccchhhhhcc--ccCCCceeeeecCCCCCCCCCchHHHhh
Q psy13427 127 DGIVLFVGQSAQNS--LLIEKTAQD-CQEFAHTRFWRQGMFTNSEKLFRA--VTRLPDLVILTNTLTTVLEPNPAIGEAA 201 (268)
Q Consensus 127 ~g~ILfV~t~~~~~--~~V~~~A~~-~g~~~i~~rW~gG~LTN~~~~~~~--~~~~Pdlvivld~~~~~~~d~~aI~EA~ 201 (268)
.++|.|+|...... ...+...++ .|...... +.....+.. .....|++|++..-....+--.+++.|+
T Consensus 54 ~~~I~i~G~G~S~~~a~~~~~~l~~~~g~~~~~~-------~~~e~~~~~~~~l~~~dlvI~iS~SG~t~e~~~a~~~ak 126 (355)
T 2a3n_A 54 FSSLFFASVGGSLAPMMAINEFAKELTTLPVYVE-------QAAELIHKGNKRLNKDSVVITLSKSGDTKESVAIAEWCK 126 (355)
T ss_dssp CSCEEEEECGGGHHHHHHHHHHHHHHCCSCEEEE-------EHHHHHHHCCTTCCTTCEEEEECSSSCCHHHHHHHHHHH
T ss_pred CCEEEEEEccHHHHHHHHHHHHHHhhcCCeEEEc-------CcHHHHhhchhcCCCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 57899999875332 223333444 55432210 111111111 1256788888873211112246888999
Q ss_pred hhCCCccccccCCCCC----CceeeeccCCCCchhHHHHHHHHHHHHHH
Q psy13427 202 KMCIPTVGIVDSNCNP----NLITYPVPGNDDTPSAIQYYCQVFKTAIL 246 (268)
Q Consensus 202 ~l~IPtIalvDTn~~p----~~IdypIP~NddS~~SI~li~~lL~~aIl 246 (268)
..|.++|+|++...++ ..+.+.+|+..++ .+-.+++.+++-.+.
T Consensus 127 ~~Ga~vi~IT~~~~S~La~~ad~~l~~~~~~~~-~~~~~~~~ll~~~l~ 174 (355)
T 2a3n_A 127 AQGIRVVAITKNADSPLAQAATWHIPMRHKNGV-EYEYMLLYWLFFRVL 174 (355)
T ss_dssp HTTCEEEEEESCTTSHHHHTCSEEEECCCSSCH-HHHHHHHHHHHHHHH
T ss_pred HCCCeEEEEECCCCChhhHhCCEEEEeCCCcch-hHHHHHHHHHHHHHH
Confidence 9999999999875444 2345556665554 222333334443333
No 23
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=92.28 E-value=0.24 Score=40.56 Aligned_cols=120 Identities=9% Similarity=0.065 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeCChhhHHHHHHHH---HHcCCceecCCcccCcccchhhhhccccCCCceeeeecCCCC
Q psy13427 113 LRDALNFVAHIAYRDGIVLFVGQSAQNSLLIEKTA---QDCQEFAHTRFWRQGMFTNSEKLFRAVTRLPDLVILTNTLTT 189 (268)
Q Consensus 113 L~~A~~~I~~i~~~~g~ILfV~t~~~~~~~V~~~A---~~~g~~~i~~rW~gG~LTN~~~~~~~~~~~Pdlvivld~~~~ 189 (268)
+.+++..|.. .++|.|+|...... +...++ .+.|.... +.+... . .....-|++|++..-..
T Consensus 27 i~~~~~~i~~----a~~I~i~G~G~S~~-~A~~~~~~l~~~g~~~~---~~~~~~----~---~~~~~~d~vI~iS~sG~ 91 (186)
T 1m3s_A 27 ADQLADHILS----SHQIFTAGAGRSGL-MAKSFAMRLMHMGFNAH---IVGEIL----T---PPLAEGDLVIIGSGSGE 91 (186)
T ss_dssp HHHHHHHHHH----CSCEEEECSHHHHH-HHHHHHHHHHHTTCCEE---ETTSTT----C---CCCCTTCEEEEECSSSC
T ss_pred HHHHHHHHHc----CCeEEEEecCHHHH-HHHHHHHHHHhcCCeEE---EeCccc----c---cCCCCCCEEEEEcCCCC
Confidence 4445554443 46899999875422 222222 23443211 112211 1 22445688888774221
Q ss_pred CCCCCchHHHhhhhCCCccccccCCCCC----CceeeeccCCCCc-----------h-----hHHHHHHHHHHHHHHh
Q psy13427 190 VLEPNPAIGEAAKMCIPTVGIVDSNCNP----NLITYPVPGNDDT-----------P-----SAIQYYCQVFKTAILK 247 (268)
Q Consensus 190 ~~~d~~aI~EA~~l~IPtIalvDTn~~p----~~IdypIP~NddS-----------~-----~SI~li~~lL~~aIl~ 247 (268)
..+-..++++|++.|.|||+|.|...+| ..+.+.+|+.... . .+.-+++.+|...+..
T Consensus 92 t~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~l~~~~~~~~~~~~~~~s~~~~~s~~~~~~~~~~d~L~~~~~~ 169 (186)
T 1m3s_A 92 TKSLIHTAAKAKSLHGIVAALTINPESSIGKQADLIIRMPGSPKDQSNGSYKTIQPMGSLFEQTLLLFYDAVILKLME 169 (186)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEESCTTSHHHHHCSEEEECSCCSCC-----CCCCSSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHCCCEEEEEECCCCCchHHhCCEEEEeCCccccCCCCcccccccCccHHHHHHHHHHHHHHHHHHH
Confidence 1112357899999999999999975444 2345556655432 1 1335666666666554
No 24
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=91.51 E-value=0.74 Score=37.36 Aligned_cols=73 Identities=16% Similarity=0.119 Sum_probs=42.0
Q ss_pred cCCCceeeeecCCCCCCCCCchHHHhhhhCCCccccccCCCCC---CceeeeccCCCCc---hh-----HHHHHHHHHHH
Q psy13427 175 TRLPDLVILTNTLTTVLEPNPAIGEAAKMCIPTVGIVDSNCNP---NLITYPVPGNDDT---PS-----AIQYYCQVFKT 243 (268)
Q Consensus 175 ~~~Pdlvivld~~~~~~~d~~aI~EA~~l~IPtIalvDTn~~p---~~IdypIP~NddS---~~-----SI~li~~lL~~ 243 (268)
...-|++|++..-....+-..++++|++.|.|+|+|.|...+. ..+.+.+|...++ .. +..+++.+|..
T Consensus 80 ~~~~d~vi~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~sl~~~ad~~l~~~~~~~~~~~~~s~~~~~~~~~ld~L~~ 159 (180)
T 1jeo_A 80 YEKDDLLILISGSGRTESVLTVAKKAKNINNNIIAIVCECGNVVEFADLTIPLEVKKSKYLPMGTTFEETALIFLDLVIA 159 (180)
T ss_dssp CCTTCEEEEEESSSCCHHHHHHHHHHHTTCSCEEEEESSCCGGGGGCSEEEECCCCCBTTBCTTHHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCcEEEEeCCCChHHHhCCEEEEeCCcccccccchhHHHHHHHHHHHHHHH
Confidence 3456788877732111112357888999999999999864322 2234455553321 22 23456666666
Q ss_pred HHHh
Q psy13427 244 AILK 247 (268)
Q Consensus 244 aIl~ 247 (268)
.+.+
T Consensus 160 ~~~~ 163 (180)
T 1jeo_A 160 EIMK 163 (180)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 25
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=91.03 E-value=0.33 Score=39.57 Aligned_cols=52 Identities=15% Similarity=0.097 Sum_probs=33.0
Q ss_pred cCCCceeeeecCCCCCCCCCchHHHhhhhCCCccccccCCCCC----CceeeeccC
Q psy13427 175 TRLPDLVILTNTLTTVLEPNPAIGEAAKMCIPTVGIVDSNCNP----NLITYPVPG 226 (268)
Q Consensus 175 ~~~Pdlvivld~~~~~~~d~~aI~EA~~l~IPtIalvDTn~~p----~~IdypIP~ 226 (268)
...-|++|++..-....+-..+++.|++.|.|+|+|.|...+| ..+.+.+|+
T Consensus 94 ~~~~d~vI~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~s~la~~ad~~l~~~~ 149 (183)
T 2xhz_A 94 VTPQDVVIAISNSGESSEITALIPVLKRLHVPLICITGRPESSMARAADVHLCVKV 149 (183)
T ss_dssp CCTTCEEEEECSSSCCHHHHHHHHHHHTTTCCEEEEESCTTSHHHHHSSEEEECCC
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCCEEEEECCCCChhHHhCCEEEEeCC
Confidence 3456888887731111122357788899999999999876554 234445554
No 26
>3cvj_A Putative phosphoheptose isomerase; rossman fold, 3-layer (ABA) sandwich, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.00A {Bacillus halodurans c-125}
Probab=87.89 E-value=2.5 Score=36.14 Aligned_cols=102 Identities=10% Similarity=0.134 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEeCChhhHHHHHHHHHHcCCce-ecCCcccCcccc--------------hhhhh--cc
Q psy13427 111 ELLRDALNFVAHIAYRDGIVLFVGQSAQNSLLIEKTAQDCQEFA-HTRFWRQGMFTN--------------SEKLF--RA 173 (268)
Q Consensus 111 ~~L~~A~~~I~~i~~~~g~ILfV~t~~~~~~~V~~~A~~~g~~~-i~~rW~gG~LTN--------------~~~~~--~~ 173 (268)
+.+.+|+..+.....+.++|.|+|...... +...++.+.+... +.-...++.... +...+ ..
T Consensus 26 ~~i~~a~~~l~~~i~~~~~I~i~G~G~S~~-~A~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~e~~~g~~~~~~~~~ 104 (243)
T 3cvj_A 26 QAIIKGAHLVSEAVMNGGRFYVFGSGHSHM-IAEEIYNRAGGLALVTAILPPELMLHERPNKSTYLERIEGLSKSYLKLH 104 (243)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEESGGGHH-HHHHTSSSTTCBTTEEECCCGGGSSSSSTTHHHHHTTCTTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEcCcHHHH-HHHHHHHHhccccccCcccchhhhccCCchhhhhhhhcccHHHHHHHHh
Confidence 567788888887667889999999986543 2223332222110 000011221110 00111 01
Q ss_pred ccCCCceeeeecCCCCCCCCCchHHHhhhhCCCccccccC
Q psy13427 174 VTRLPDLVILTNTLTTVLEPNPAIGEAAKMCIPTVGIVDS 213 (268)
Q Consensus 174 ~~~~Pdlvivld~~~~~~~d~~aI~EA~~l~IPtIalvDT 213 (268)
....-|++|++..-....+--.+++.|++.|+|||+|.+.
T Consensus 105 ~~~~~Dv~I~iS~SG~t~~~i~~~~~Ak~~G~~vI~IT~~ 144 (243)
T 3cvj_A 105 QVTNKDVIMIISNSGRNTVPVEMAIESRNIGAKVIAMTSM 144 (243)
T ss_dssp TCCTTCEEEEECSSCCSHHHHHHHHHHHHHTCEEEEEECH
T ss_pred cCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 2455688888773111112246888899999999999886
No 27
>2aml_A SIS domain protein; 46906266, LMO0035 protein, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=86.16 E-value=13 Score=34.06 Aligned_cols=95 Identities=12% Similarity=0.081 Sum_probs=50.7
Q ss_pred CCeEEEEeCChhh--HHHHHHHHHH-cCCceecCCcccCcccchhhhhccccCCCceeeeecCCCCCCCCCchHHHhhhh
Q psy13427 127 DGIVLFVGQSAQN--SLLIEKTAQD-CQEFAHTRFWRQGMFTNSEKLFRAVTRLPDLVILTNTLTTVLEPNPAIGEAAKM 203 (268)
Q Consensus 127 ~g~ILfV~t~~~~--~~~V~~~A~~-~g~~~i~~rW~gG~LTN~~~~~~~~~~~Pdlvivld~~~~~~~d~~aI~EA~~l 203 (268)
.++|.|+|..... ....+.+..+ .|.....- .+..+ . .........|++|++..-....+--.+++.|+..
T Consensus 50 ~~~I~i~G~G~S~~~a~~~~~~l~~~~g~~v~~~--~~~~~---~-~~~~~~~~~dlvI~iS~SG~T~e~l~a~~~ak~~ 123 (373)
T 2aml_A 50 AKEWLILATGSSLNAAQSAKYYIENLADVRITIE--EPFNH---L-YYEKLSSHLDLVIGISQSGQSTSTISALERVKKE 123 (373)
T ss_dssp CCEEEEEECHHHHHHHHHHHHHHHHHSSCEEEEE--CHHHH---H-HHCCCCTTCCEEEEECSSSCBHHHHHHHHHHHHH
T ss_pred CCEEEEEEecHHHHHHHHHHHHHHHHhCCcEEEE--CchhH---H-HhccCCCCCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 6889999987533 2222333333 34322110 11111 1 1112345678888887311111224688899999
Q ss_pred -CCCccccccCCCCC--Cc--eeeeccCC
Q psy13427 204 -CIPTVGIVDSNCNP--NL--ITYPVPGN 227 (268)
Q Consensus 204 -~IPtIalvDTn~~p--~~--IdypIP~N 227 (268)
|.++|+|+|...++ +. +.+.+|+.
T Consensus 124 ~Ga~vIaIT~~~~S~La~~ad~~l~~~~~ 152 (373)
T 2aml_A 124 ASVPVVALTSDVTSEIAEFADITLDIGSG 152 (373)
T ss_dssp CCCCEEEEESCTTSGGGGGCSEEEECSCC
T ss_pred CCCcEEEEECCCCChHHHhcCcceecCCC
Confidence 99999999875443 22 44455543
No 28
>3g68_A Putative phosphosugar isomerase; SIS domain, double-SIS DOMA protein, structural genomics, joint center for structural G JCSG; HET: MSE CIT; 1.80A {Clostridium difficile}
Probab=82.28 E-value=8.4 Score=35.20 Aligned_cols=117 Identities=9% Similarity=-0.002 Sum_probs=61.5
Q ss_pred hCCCeEEEEeCChhh--HHHHHHHHHH-cCCceecCCcccCcccchhhhhccccC-CCceeeeecCCCCCCCCCchHHHh
Q psy13427 125 YRDGIVLFVGQSAQN--SLLIEKTAQD-CQEFAHTRFWRQGMFTNSEKLFRAVTR-LPDLVILTNTLTTVLEPNPAIGEA 200 (268)
Q Consensus 125 ~~~g~ILfV~t~~~~--~~~V~~~A~~-~g~~~i~~rW~gG~LTN~~~~~~~~~~-~Pdlvivld~~~~~~~d~~aI~EA 200 (268)
.+.++|.|+|..... ....+.+.++ .|..... ..++.+.... .... ..|++|++.--....+--.+++.|
T Consensus 32 ~~~~~I~i~G~G~S~~~a~~~~~~l~~~~g~~~~~--~~~se~~~~~----~~~~~~~dlvI~iS~SG~T~e~l~a~~~a 105 (352)
T 3g68_A 32 TNLKKIIITGSGTSYHSGVQVQPYLQNLLDIDVVK--MYPFMITEDT----FKFDNENTLVVGVSQGGSSYSTYNAMKLA 105 (352)
T ss_dssp SCCSEEEEECSHHHHHHHHHHHHHHHHHCSSEEEE--ECGGGCCGGG----GSSCCTTEEEEEEESSSCCHHHHHHHHHH
T ss_pred cCCCEEEEEEeehHHHHHHHHHHHHHHHhCCcEEE--Ecchhhhhcc----cCCCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 466889999987643 2233334444 4543211 1222232111 1233 678888776311111123688999
Q ss_pred hhhCCCccccccCCCCC--CceeeeccCC---------CCchhHHHHHHHHHHHHHHh
Q psy13427 201 AKMCIPTVGIVDSNCNP--NLITYPVPGN---------DDTPSAIQYYCQVFKTAILK 247 (268)
Q Consensus 201 ~~l~IPtIalvDTn~~p--~~IdypIP~N---------ddS~~SI~li~~lL~~aIl~ 247 (268)
+..|.++|+|++...++ +..|+.|+.. .++..+--+.+.+|+-.+..
T Consensus 106 k~~ga~~iaIT~~~~S~La~~aD~~l~~~~g~E~~va~tksf~~ql~~l~~La~~l~~ 163 (352)
T 3g68_A 106 EDKGCKIASMAGCKNALIDEISDYILTVNCGEEKSGAKTKGYYCTKLNLMLLGLQIAR 163 (352)
T ss_dssp HHTTCEEEEEESSTTCGGGGGCSEECCCCCCCCCCSSCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCEEEEeCCCCChHHHhCCEEEEeCCCCCccccccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999764433 3345555432 23333333455556555543
No 29
>3fkj_A Putative phosphosugar isomerases; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.12A {Salmonella typhimurium LT2}
Probab=81.71 E-value=8.7 Score=35.06 Aligned_cols=109 Identities=16% Similarity=0.018 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEeCChhh--HHHHHHHHHH-c-CCceecCCcccCcccchhhhhc--cccCCCceeeee
Q psy13427 111 ELLRDALNFVAHIAYRDGIVLFVGQSAQN--SLLIEKTAQD-C-QEFAHTRFWRQGMFTNSEKLFR--AVTRLPDLVILT 184 (268)
Q Consensus 111 ~~L~~A~~~I~~i~~~~g~ILfV~t~~~~--~~~V~~~A~~-~-g~~~i~~rW~gG~LTN~~~~~~--~~~~~Pdlvivl 184 (268)
+.+.+++..|.. ..+.++|.|+|..... ....+....+ . |..... ..+ ....+. ......|++|++
T Consensus 25 ~~i~~~~~~i~~-~~~a~~I~i~G~GtS~~aa~~~~~~l~~~~~g~~~~~--~~~-----~e~~~~~~~~l~~~dlvI~i 96 (347)
T 3fkj_A 25 ENARRIISDILG-KQNIERVWFVGCGGSLTGFWPGKYFLDCEASKLAVGY--ITS-----NEFVHATPKALGKNSVVILA 96 (347)
T ss_dssp HHHHHHHHHHHT-TSCCCEEEEEESTHHHHTTHHHHHHHHHHCSSCEEEE--EEH-----HHHHHSCCTTCSTTEEEEEE
T ss_pred HHHHHHHHHHHh-hCCCCEEEEEEehHHHHHHHHHHHHHHHHhCCCeEEE--eCc-----HHHHhhCcCCCCCCCEEEEE
Confidence 445566666652 1356889999987643 2223333333 2 433211 001 111111 113456788887
Q ss_pred cCCCCCCCCCchHHHhhhhCCCccccccCCCCC--Cc--eeeeccCC
Q psy13427 185 NTLTTVLEPNPAIGEAAKMCIPTVGIVDSNCNP--NL--ITYPVPGN 227 (268)
Q Consensus 185 d~~~~~~~d~~aI~EA~~l~IPtIalvDTn~~p--~~--IdypIP~N 227 (268)
.--....+--.+++.|++.|.++|+|++...++ +. +.+.+|+.
T Consensus 97 S~SG~T~e~l~a~~~ak~~Ga~~iaIT~~~~S~La~~ad~~l~~~~g 143 (347)
T 3fkj_A 97 SQQGNTAETVAAARVAREKGAATIGLVYQPDTPLCEYSDYIIEYQWA 143 (347)
T ss_dssp ESSSCCHHHHHHHHHHHHHTCEEEEEESSTTCHHHHTCSEEEECBCC
T ss_pred eCCCCcHHHHHHHHHHHHCCCcEEEEeCCCCChHHhhcCeEEEeccC
Confidence 631111122468889999999999999875544 23 44445554
No 30
>3fj1_A Putative phosphosugar isomerase; YP_167080.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 1.75A {Silicibacter pomeroyi dss-3}
Probab=81.70 E-value=21 Score=32.37 Aligned_cols=101 Identities=8% Similarity=0.013 Sum_probs=53.4
Q ss_pred hCCCeEEEEeCChhh--HHHHHHHHHH-cCCceecCCcccCcccchhhhhccccCCCceeeeecCCCCCCCCCchHHHhh
Q psy13427 125 YRDGIVLFVGQSAQN--SLLIEKTAQD-CQEFAHTRFWRQGMFTNSEKLFRAVTRLPDLVILTNTLTTVLEPNPAIGEAA 201 (268)
Q Consensus 125 ~~~g~ILfV~t~~~~--~~~V~~~A~~-~g~~~i~~rW~gG~LTN~~~~~~~~~~~Pdlvivld~~~~~~~d~~aI~EA~ 201 (268)
.+.++|.|+|..... ....+.+.++ .|..... ..+...+.+. .......|++|++.--....+--.+++.|+
T Consensus 41 ~~~~~I~i~G~G~S~~aa~~~~~~l~~~~g~~~~~--~~~~~~~~~~---~~~~~~~dlvI~iS~SG~T~e~l~a~~~ak 115 (344)
T 3fj1_A 41 RDPSFVATVARGSSDHVCTYLSYAAELLLGLPVAS--LGPSVASVYD---ARLRLDRALCLAVSQSGKSPDIVAMTRNAG 115 (344)
T ss_dssp HCCSEEEEECCTHHHHHHHHHHHHHHHHHCCCEEE--CCTHHHHTTC---CCCCCTTEEEEEEESSSCCHHHHHHHHHHH
T ss_pred CCCCEEEEEEechHHHHHHHHHHHHHHHhCCcEEE--ecchHHhhhc---ccCCCCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 567889999987643 2233333333 5543221 0001111110 122346778877762111112246889999
Q ss_pred hhCCCccccccCCCCC----CceeeeccC-CCCc
Q psy13427 202 KMCIPTVGIVDSNCNP----NLITYPVPG-NDDT 230 (268)
Q Consensus 202 ~l~IPtIalvDTn~~p----~~IdypIP~-NddS 230 (268)
..|.++|+|++...++ +.+.+.+|+ ++.+
T Consensus 116 ~~Ga~~iaIT~~~~S~La~~ad~~l~~~~g~E~~ 149 (344)
T 3fj1_A 116 RDGALCVALTNDAASPLAGVSAHTIDIHAGPELS 149 (344)
T ss_dssp HTTCEEEEEESCTTSHHHHTSSEEEECCCCCCCS
T ss_pred HCCCcEEEEECCCCChHHHhcCEeeecCCCCccc
Confidence 9999999999764443 234445553 4444
No 31
>3knz_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 2.50A {Salmonella enterica subsp}
Probab=81.34 E-value=15 Score=33.82 Aligned_cols=97 Identities=12% Similarity=0.040 Sum_probs=53.6
Q ss_pred hCCCeEEEEeCChhh--HHHHHHHHHH-cCCceecCCcccCcccchhhhhccccCCCceeeeecCCCCCCCCCchHHHhh
Q psy13427 125 YRDGIVLFVGQSAQN--SLLIEKTAQD-CQEFAHTRFWRQGMFTNSEKLFRAVTRLPDLVILTNTLTTVLEPNPAIGEAA 201 (268)
Q Consensus 125 ~~~g~ILfV~t~~~~--~~~V~~~A~~-~g~~~i~~rW~gG~LTN~~~~~~~~~~~Pdlvivld~~~~~~~d~~aI~EA~ 201 (268)
.+.++|.|+|..... ....+.+.++ .|..... ..++.+..... .....|++|++.--....+--.+++.|+
T Consensus 48 ~~a~~I~i~G~GtS~~aa~~~~~~~~~~~g~~~~~--~~~se~~~~~~----~~~~~dlvI~iS~SGeT~e~l~a~~~ak 121 (366)
T 3knz_A 48 RGVTRIILTGSGTSYHGALTARTFMQRWCALPVDV--CWPFMLDDETL----ARSGKALVVGISQGGGSLSTLAAMERAR 121 (366)
T ss_dssp TTCCEEEEECCHHHHHHHHHHHHHHHHHHTSCEEE--ECGGGCCHHHH----HHSCSEEEEEEESSSCCHHHHHHHHHHH
T ss_pred cCCCEEEEEEechHHHHHHHHHHHHHHHHCCCeEE--EcchHHHhhcc----CCCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 566889999987642 2223333333 4543211 12233322111 1356788887763111112246889999
Q ss_pred hhCCCccccccCCCCC--CceeeeccCC
Q psy13427 202 KMCIPTVGIVDSNCNP--NLITYPVPGN 227 (268)
Q Consensus 202 ~l~IPtIalvDTn~~p--~~IdypIP~N 227 (268)
..|.+||+|++...+| +..|+.|+..
T Consensus 122 ~~Ga~~IaIT~~~~S~La~~aD~~l~~~ 149 (366)
T 3knz_A 122 NVGHITASMAGVAPATIDRAADYILTVP 149 (366)
T ss_dssp HTTCEEEEEESSSSCGGGGGCSEECCCC
T ss_pred HcCCCEEEEECCCCChhhhhcCEEEecC
Confidence 9999999999764444 3456655543
No 32
>3eua_A Putative fructose-aminoacid-6-phosphate deglycase; putative phosphosugar isomerase, structural genomics, joint for structural genomics, JCSG; HET: MSE FLC; 1.90A {Bacillus subtilis}
Probab=80.39 E-value=5.8 Score=35.85 Aligned_cols=105 Identities=15% Similarity=0.024 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEeCChhh--HHHHHHHHHH-c-CCceecCCcccCcccchhhhhc--cccCCCceeeeec
Q psy13427 112 LLRDALNFVAHIAYRDGIVLFVGQSAQN--SLLIEKTAQD-C-QEFAHTRFWRQGMFTNSEKLFR--AVTRLPDLVILTN 185 (268)
Q Consensus 112 ~L~~A~~~I~~i~~~~g~ILfV~t~~~~--~~~V~~~A~~-~-g~~~i~~rW~gG~LTN~~~~~~--~~~~~Pdlvivld 185 (268)
.+.+++..|.+ .+.++|.|+|..... ....+...++ . |..... . +.....+. ......|++|++.
T Consensus 12 ~i~~~v~~i~~--~~~~~I~i~G~GtS~~aa~~~~~~l~~~~~g~~~~~---~----~~~e~~~~~~~~l~~~dlvI~iS 82 (329)
T 3eua_A 12 EVQAFLQDLKG--KTIDHVFFVACGGSSAIMYPSKYVFDRESKSINSDL---Y----SANEFIQRNPVQLGEKSLVILCS 82 (329)
T ss_dssp HHHHHHHHHTT--CCCCEEEEEECTHHHHTTHHHHHHHHHHCSSCEEEE---E----EHHHHHHHCCTTCSTTEEEEEEE
T ss_pred HHHHHHHHHHH--CCCCEEEEEEccHHHHHHHHHHHHHHHhcCCCeEEE---E----ccHHHHhcCccCCCCCcEEEEEc
Confidence 34455555532 256889999987632 2223333333 2 433211 0 11111111 1234567888876
Q ss_pred CCCCCCCCCchHHHhhhhCCCccccccCCCCC--Cceeeecc
Q psy13427 186 TLTTVLEPNPAIGEAAKMCIPTVGIVDSNCNP--NLITYPVP 225 (268)
Q Consensus 186 ~~~~~~~d~~aI~EA~~l~IPtIalvDTn~~p--~~IdypIP 225 (268)
--....+--.+++.|+..|.++|+|++...++ +..|+.|+
T Consensus 83 ~SG~T~e~l~a~~~ak~~Ga~~iaIT~~~~S~La~~ad~~l~ 124 (329)
T 3eua_A 83 HSGNTPETVKAAAFARGKGALTIAMTFKPESPLAQEAQYVAQ 124 (329)
T ss_dssp SSSCCHHHHHHHHHHHHTTCEEEEEESCTTSHHHHHSSEEEE
T ss_pred CCCCCHHHHHHHHHHHHCCCCEEEEECCCCChHHHhCCEEEE
Confidence 31111112468899999999999999875554 23444443
No 33
>3jx9_A Putative phosphoheptose isomerase; YP_001815198.1, structura genomics, joint center for structural genomics, JCSG; HET: MSE; 1.95A {Exiguobacterium sibiricum 255-15}
Probab=76.23 E-value=4.3 Score=34.01 Aligned_cols=88 Identities=13% Similarity=0.095 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEeCChhhHHHHHHHHHHcCCceecCCcccCcccchhhhhccccCCCceeeeecCCCCC
Q psy13427 111 ELLRDALNFVAHIAYRDGIVLFVGQSAQNSLLIEKTAQDCQEFAHTRFWRQGMFTNSEKLFRAVTRLPDLVILTNTLTTV 190 (268)
Q Consensus 111 ~~L~~A~~~I~~i~~~~g~ILfV~t~~~~~~~V~~~A~~~g~~~i~~rW~gG~LTN~~~~~~~~~~~Pdlvivld~~~~~ 190 (268)
..+.+|+.++..-...+|.|=+.|+..... +..++..+.+-..-.++|.. + ...+.-|.++++.+ .
T Consensus 22 ~~I~~AA~llaqai~~~g~IyvfG~Ghs~~-~~~e~~~~~e~l~~~~~~~~----~------~~i~~~D~vii~S~---S 87 (170)
T 3jx9_A 22 DELFDVVRLLAQALVGQGKVYLDAYGEFEG-LYPMLSDGPDQMKRVTKIKD----H------KTLHAVDRVLIFTP---D 87 (170)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEECGGGGG-GTHHHHTSTTCCTTEEECCT----T------CCCCTTCEEEEEES---C
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCCcHHH-HHHHHHcccCCccchhhhhh----c------CCCCCCCEEEEEeC---C
Confidence 388999999999889999998888876332 11122222221111223321 1 13567788888874 1
Q ss_pred CCCC---chHHHhhhhCCCcccccc
Q psy13427 191 LEPN---PAIGEAAKMCIPTVGIVD 212 (268)
Q Consensus 191 ~~d~---~aI~EA~~l~IPtIalvD 212 (268)
-.|. ....+|+..|+|+|||+.
T Consensus 88 g~n~~~ie~A~~ake~G~~vIaITs 112 (170)
T 3jx9_A 88 TERSDLLASLARYDAWHTPYSIITL 112 (170)
T ss_dssp SCCHHHHHHHHHHHHHTCCEEEEES
T ss_pred CCCHHHHHHHHHHHHCCCcEEEEeC
Confidence 2333 456778889999999998
No 34
>2zj3_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] 1; glucosamine-6-phosphate synthase, aldose/ketose isomerase, rossmann-like fold; HET: G6P; 1.90A {Homo sapiens} PDB: 2zj4_A* 2v4m_A*
Probab=74.27 E-value=2.1 Score=39.56 Aligned_cols=72 Identities=8% Similarity=0.016 Sum_probs=41.5
Q ss_pred CCCceeeeecCCCCCCCCCchHHHhhhhCCCccccccCCCCC----CceeeeccCC-C------CchhHHHHHHHHHHHH
Q psy13427 176 RLPDLVILTNTLTTVLEPNPAIGEAAKMCIPTVGIVDSNCNP----NLITYPVPGN-D------DTPSAIQYYCQVFKTA 244 (268)
Q Consensus 176 ~~Pdlvivld~~~~~~~d~~aI~EA~~l~IPtIalvDTn~~p----~~IdypIP~N-d------dS~~SI~li~~lL~~a 244 (268)
..-|++|++..-....+--.+++.|++.|.+||+|++...++ ..+.+.+|+. . +|..+.-+++.+|+..
T Consensus 106 ~~~dlvI~iS~SG~T~e~l~a~~~Ak~~Ga~~iaIT~~~~S~La~~ad~~l~~~~g~E~~~a~t~s~ta~l~~l~~L~~~ 185 (375)
T 2zj3_A 106 FRDDVCFFLSQSGETADTLMGLRYCKERGALTVGITNTVGSSISRETDCGVHINAGPEIGVASTKAYTSQFVSLVMFALM 185 (375)
T ss_dssp CTTEEEEEEESSSCCHHHHHHHHHHHHTTCEEEEEESCTTCHHHHHSSEEEECCCCCCCCSSCSHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHcCCcEEEEECCCCChHHHhCCEeeeecCCcccchhhhhhHHHHHHHHHHHHHH
Confidence 455677777631111122468899999999999999875444 2244445532 2 2333444555566555
Q ss_pred HHh
Q psy13427 245 ILK 247 (268)
Q Consensus 245 Il~ 247 (268)
+..
T Consensus 186 l~~ 188 (375)
T 2zj3_A 186 MCD 188 (375)
T ss_dssp HTT
T ss_pred HHH
Confidence 544
No 35
>1moq_A Glucosamine 6-phosphate synthase; glutamine amidotransferase; HET: GLP MES; 1.57A {Escherichia coli} SCOP: c.80.1.1 PDB: 1mor_A* 1mos_A*
Probab=72.96 E-value=6 Score=36.18 Aligned_cols=73 Identities=5% Similarity=0.056 Sum_probs=43.4
Q ss_pred cCCCceeeeecCCCCCCCCCchHHHhhhhC-CCccccccCCCCC----CceeeeccCCCC-------chhHHHHHHHHHH
Q psy13427 175 TRLPDLVILTNTLTTVLEPNPAIGEAAKMC-IPTVGIVDSNCNP----NLITYPVPGNDD-------TPSAIQYYCQVFK 242 (268)
Q Consensus 175 ~~~Pdlvivld~~~~~~~d~~aI~EA~~l~-IPtIalvDTn~~p----~~IdypIP~Ndd-------S~~SI~li~~lL~ 242 (268)
....|++|++..-....+--.+++.|++.| .++|+|++...++ ..+.+.+|+..+ |..+.-+++.+|+
T Consensus 97 ~~~~dlvI~iS~SG~T~e~l~a~~~ak~~G~a~viaIT~~~~S~La~~ad~~l~~~~~~e~~~a~t~s~~~~l~~l~~L~ 176 (368)
T 1moq_A 97 VRRNSLMITLSQSGETADTLAGLRLSKELGYLGSLAICNVPGSSLVRESDLALMTNAGTEIGVASTKAFTTQLTVLLMLV 176 (368)
T ss_dssp CCTTEEEEEEESSSCCHHHHHHHHHHTTTTCSEEEEEESSTTCHHHHHSSEEEECCCCCCCSSSCSHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCCeEEEEECCCCChHHHhCCEEEEcCCCCeecccchhhHHHHHHHHHHHH
Confidence 456788888773111112246788899999 9999999875444 224444554332 3444455555565
Q ss_pred HHHHh
Q psy13427 243 TAILK 247 (268)
Q Consensus 243 ~aIl~ 247 (268)
..+..
T Consensus 177 ~~l~~ 181 (368)
T 1moq_A 177 AKLSR 181 (368)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
No 36
>3tbf_A Glucosamine--fructose-6-phosphate aminotransferas [isomerizing]; structural genomics; 2.28A {Francisella tularensis subsp}
Probab=72.60 E-value=11 Score=34.67 Aligned_cols=96 Identities=6% Similarity=-0.011 Sum_probs=51.3
Q ss_pred hCCCeEEEEeCChhh--HHHHHHHHHH-cCCceecCCcccCcccchhhhhccccCCCceeeeecCCCCCCCCCchHHHhh
Q psy13427 125 YRDGIVLFVGQSAQN--SLLIEKTAQD-CQEFAHTRFWRQGMFTNSEKLFRAVTRLPDLVILTNTLTTVLEPNPAIGEAA 201 (268)
Q Consensus 125 ~~~g~ILfV~t~~~~--~~~V~~~A~~-~g~~~i~~rW~gG~LTN~~~~~~~~~~~Pdlvivld~~~~~~~d~~aI~EA~ 201 (268)
.+.++|.|+|..... ....+.+.++ .|..... ..++-+. .........|++|++.--....+--.+++.|+
T Consensus 52 ~~a~~I~i~G~GtS~~aa~~~~~~~~~~~g~~~~~--~~~se~~----~~~~~~~~~dlvI~iS~SG~T~e~l~al~~ak 125 (372)
T 3tbf_A 52 EKTKHICIVACGTSYNAGMTAKYWIEKYAKVPCSV--EIASEIR----YRDNVVVDGSLFVSISQSGETADTLESLRKSK 125 (372)
T ss_dssp HSCCEEEEEECHHHHHHHHHHHHHHHHHTCCCEEE--EEHHHHT----TSCCCCCTTEEEEEEESSSCCHHHHHHHHHHT
T ss_pred hcCCEEEEEEechHHHHHHHHHHHHHHHhCCcEEE--echhHhh----hcccCCCCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 577899999987642 2223333333 3433211 0111111 00122456788888763111111236888999
Q ss_pred hhC-CCccccccCCCCC----CceeeeccC
Q psy13427 202 KMC-IPTVGIVDSNCNP----NLITYPVPG 226 (268)
Q Consensus 202 ~l~-IPtIalvDTn~~p----~~IdypIP~ 226 (268)
..| .++|+|++...++ ..+.+.+|+
T Consensus 126 ~~G~a~~iaIT~~~~S~La~~aD~~l~~~~ 155 (372)
T 3tbf_A 126 KQNYVGSMCICNVPNSSLVRESDIAFMTKA 155 (372)
T ss_dssp TTTEEEEEEEESSSSSHHHHHSSEEEECCC
T ss_pred HcCCceEEEEcCCCCChHHHhCCEeeeecC
Confidence 999 9999999765444 224445554
No 37
>3hba_A Putative phosphosugar isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE CIT; 2.00A {Shewanella denitrificans OS217}
Probab=72.30 E-value=49 Score=29.83 Aligned_cols=87 Identities=10% Similarity=0.111 Sum_probs=46.2
Q ss_pred hCCCeEEEEeCChhh--HHHHHHHHH-HcCCceecCCcccCcccchhhhhccccCCCceeeeecCCCCCCCCCchHHHhh
Q psy13427 125 YRDGIVLFVGQSAQN--SLLIEKTAQ-DCQEFAHTRFWRQGMFTNSEKLFRAVTRLPDLVILTNTLTTVLEPNPAIGEAA 201 (268)
Q Consensus 125 ~~~g~ILfV~t~~~~--~~~V~~~A~-~~g~~~i~~rW~gG~LTN~~~~~~~~~~~Pdlvivld~~~~~~~d~~aI~EA~ 201 (268)
.+.++|.|+|..... ....+...+ ..|..... ..+...+.+. .......|++|++.--....+--.+++.|+
T Consensus 40 ~~~~~I~i~G~G~S~~aa~~~~~~l~~~~g~~v~~--~~~~~~~~~~---~~~~~~~dl~i~iS~SG~T~e~~~a~~~ak 114 (334)
T 3hba_A 40 FKPKFVMIVGRGSSDHAGVFAKYLFEIEASIPTFA--AAPSVASVYG---KTLKLAGGLVIVISQSGRSPDILAQARMAK 114 (334)
T ss_dssp HCCSCEEEESSGGGCHHHHHHHHHHHHHHCCCEEE--CCHHHHHTSC---CCCCCTTCEEEEEESSSCCHHHHHHHHHHH
T ss_pred CCCCEEEEEEechHHHHHHHHHHHHHHHhCCcEEE--EcchHHHHhc---ccCCCCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 566889999876532 222333333 35644221 0011111110 112345678877763111112246889999
Q ss_pred hhCCCccccccCCCC
Q psy13427 202 KMCIPTVGIVDSNCN 216 (268)
Q Consensus 202 ~l~IPtIalvDTn~~ 216 (268)
+.|.++|+|++...+
T Consensus 115 ~~g~~~i~IT~~~~S 129 (334)
T 3hba_A 115 NAGAFCVALVNDETA 129 (334)
T ss_dssp HTTCEEEEEESCTTS
T ss_pred HcCCcEEEEeCCCCC
Confidence 999999999976433
No 38
>1j5x_A Glucosamine-6-phosphate deaminase; structural genomics, TM0813, glucosamine-6-phosphate deamina PSI, protein structure initiative; 1.80A {Thermotoga maritima} SCOP: c.80.1.1
Probab=70.99 E-value=4.3 Score=36.85 Aligned_cols=99 Identities=18% Similarity=0.069 Sum_probs=51.2
Q ss_pred hCCCeEEEEeCChhh--HHHHHHHHHH-cCCceecCCcccCcccchhhhhccccCCCceeeeecCCCCCCCCCchHHHhh
Q psy13427 125 YRDGIVLFVGQSAQN--SLLIEKTAQD-CQEFAHTRFWRQGMFTNSEKLFRAVTRLPDLVILTNTLTTVLEPNPAIGEAA 201 (268)
Q Consensus 125 ~~~g~ILfV~t~~~~--~~~V~~~A~~-~g~~~i~~rW~gG~LTN~~~~~~~~~~~Pdlvivld~~~~~~~d~~aI~EA~ 201 (268)
.+.++|.|+|..... .........+ .|..... ..+..+. ... ......||++|++..-....+--.+++.|+
T Consensus 50 ~~~~~I~i~G~G~S~~~a~~~~~~l~~~~g~~v~~--~~~~~~~-~~~--~~~~~~~dlvI~iS~SG~T~e~l~a~~~ak 124 (342)
T 1j5x_A 50 NLTDEVLFVGCGSSYNLALTISYYFERVLKIRTKA--IPAGEVA-FQK--IPDLEERGLAFLFSRTGNTTEVLLANDVLK 124 (342)
T ss_dssp --CCEEEEEESTHHHHHHHHHHHHHHHHHCCEEEE--EEHHHHH-TTC--SCCCCSSEEEEEECSSSCCHHHHHHHHHHH
T ss_pred CCCCEEEEEEchHHHHHHHHHHHHHHHhhCCeEEE--ECchHHH-hcC--cccCCCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 456889999987632 2222333333 5543211 0111110 000 011223588888873221112246888999
Q ss_pred hhCCCccccccCCCCC----CceeeeccCCC
Q psy13427 202 KMCIPTVGIVDSNCNP----NLITYPVPGND 228 (268)
Q Consensus 202 ~l~IPtIalvDTn~~p----~~IdypIP~Nd 228 (268)
+.|.++|+|++...++ ....+.+|+++
T Consensus 125 ~~Ga~vIaIT~~~~S~La~~ad~~l~~~~~e 155 (342)
T 1j5x_A 125 KRNHRTIGITIEEESRLAKESDLPLVFPVRE 155 (342)
T ss_dssp HTTEEEEEEESCTTSHHHHHSSEEEECCCCC
T ss_pred HCCCCEEEEECCCCCHHHHhcCEEEEcCCCc
Confidence 9999999999875444 23455566644
No 39
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=70.32 E-value=11 Score=32.42 Aligned_cols=120 Identities=10% Similarity=0.005 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeCChh--hH---HHHHHHHHHcCCceecCCcccCcccchhhhhccccCCCceeeeecCC
Q psy13427 113 LRDALNFVAHIAYRDGIVLFVGQSAQ--NS---LLIEKTAQDCQEFAHTRFWRQGMFTNSEKLFRAVTRLPDLVILTNTL 187 (268)
Q Consensus 113 L~~A~~~I~~i~~~~g~ILfV~t~~~--~~---~~V~~~A~~~g~~~i~~rW~gG~LTN~~~~~~~~~~~Pdlvivld~~ 187 (268)
.+++..++....-.-++|.|++.... .. +-.+++++..|..+.. .|... ..........+...||+||+.+
T Consensus 119 ~~~~~~~l~~~~pg~~~I~~i~~~~~~~~~~r~~g~~~al~~~gi~~~~-~~~~~-~~~~~~~~~~l~~~~dai~~~~-- 194 (295)
T 3lft_A 119 AQQQVELIKALTPNVKTIGALYSSSEDNSKTQVEEFKAYAEKAGLTVET-FAVPS-TNEIASTVTVMTSKVDAIWVPI-- 194 (295)
T ss_dssp HHHHHHHHHHHCTTCCEEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEE-EEESS-GGGHHHHHHHHTTTCSEEEECS--
T ss_pred HHHHHHHHHHhCCCCcEEEEEeCCCCcchHHHHHHHHHHHHHcCCEEEE-EecCC-HHHHHHHHHHHHhcCCEEEECC--
Confidence 34555666554223468988875432 11 3345566677765443 23321 1222222223345799998865
Q ss_pred CCCCCCCch------HHH-hhhhCCCccccccCC-CCCCceeeeccCCCCchhHHHHHHHHH
Q psy13427 188 TTVLEPNPA------IGE-AAKMCIPTVGIVDSN-CNPNLITYPVPGNDDTPSAIQYYCQVF 241 (268)
Q Consensus 188 ~~~~~d~~a------I~E-A~~l~IPtIalvDTn-~~p~~IdypIP~NddS~~SI~li~~lL 241 (268)
|..| +++ +...+||++|+-|.. ..+.+.++-.|.-.-+..+..+++.+|
T Consensus 195 -----D~~a~g~~~~l~~~~~~~~i~vig~d~~~~~~~~Lttv~~~~~~~G~~Aa~~l~~~l 251 (295)
T 3lft_A 195 -----DNTIASGFPTVVSSNQSSKKPIYPSATAMVEVGGLASVVIDQHDLGVATGKMIVQVL 251 (295)
T ss_dssp -----CHHHHHTHHHHHHHTTTTCCCEEESSHHHHTTTCCEEEECCHHHHHHHHHHHHHHHH
T ss_pred -----chhHHHHHHHHHHHHHHcCCCEEeCCHHHHhcCcEEEEecCHHHHHHHHHHHHHHHH
Confidence 2233 333 234589999997654 345667777665555555555554433
No 40
>2poc_A D-fructose-6- PH, isomerase domain of glutamine-fructose-6-phosphat transaminase (isomerizing); glucosamine-6-phosphate synthase; HET: BG6 UD1; 1.80A {Candida albicans} PDB: 2put_A* 2puv_A* 2puw_A*
Probab=67.58 E-value=3.2 Score=38.14 Aligned_cols=72 Identities=13% Similarity=0.041 Sum_probs=41.1
Q ss_pred CCCceeeeecCCCCCCCCCchHHHhhhhCCCccccccCCCCC----CceeeeccC-CCC------chhHHHHHHHHHHHH
Q psy13427 176 RLPDLVILTNTLTTVLEPNPAIGEAAKMCIPTVGIVDSNCNP----NLITYPVPG-NDD------TPSAIQYYCQVFKTA 244 (268)
Q Consensus 176 ~~Pdlvivld~~~~~~~d~~aI~EA~~l~IPtIalvDTn~~p----~~IdypIP~-Ndd------S~~SI~li~~lL~~a 244 (268)
..-|++|++..-....+--.+++.|+..|.++|+|++...++ ..+.+.+|+ +.. |..+--+.+.+|+..
T Consensus 96 ~~~dlvI~iS~SG~T~e~l~a~~~Ak~~Ga~~iaIT~~~~S~La~~ad~~l~~~~g~E~~~a~t~s~t~~l~~l~~L~~~ 175 (367)
T 2poc_A 96 FRDDTCVFVSQSGETADSILALQYCLERGALTVGIVNSVGSSMSRQTHCGVHINAGPEIGVASTKAYTSQYIALVMFALS 175 (367)
T ss_dssp CTTEEEEEEESSSCCHHHHHHHHHHHHTTCEEEEEESSTTSHHHHHSSEEEECCCCCCCSSSCSHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCCEEEEECCCCChHHHhCCEEEEcCCCCcccccccHHHHHHHHHHHHHHHH
Confidence 445677777631111122468889999999999999875444 224444553 222 223444455556555
Q ss_pred HHh
Q psy13427 245 ILK 247 (268)
Q Consensus 245 Il~ 247 (268)
+..
T Consensus 176 l~~ 178 (367)
T 2poc_A 176 LSN 178 (367)
T ss_dssp HTT
T ss_pred HHH
Confidence 543
No 41
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=61.87 E-value=34 Score=30.83 Aligned_cols=92 Identities=17% Similarity=0.169 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEeCChhhHHHHHHHHHHcCCceec------CCcccCcccchhhhhccccCCCceeeee
Q psy13427 111 ELLRDALNFVAHIAYRDGIVLFVGQSAQNSLLIEKTAQDCQEFAHT------RFWRQGMFTNSEKLFRAVTRLPDLVILT 184 (268)
Q Consensus 111 ~~L~~A~~~I~~i~~~~g~ILfV~t~~~~~~~V~~~A~~~g~~~i~------~rW~gG~LTN~~~~~~~~~~~Pdlvivl 184 (268)
..|.+|+..+..- ..+-++++||..+.-.+.+++.++..|..+.. .-+++|...+-.. ....-|++|+.
T Consensus 210 ~~ll~A~~~l~~~-~p~~~lvivG~g~~~~~~l~~~~~~~gl~~~~~~~~~~~v~~~~~~~dl~~----~y~~aDv~vl~ 284 (374)
T 2xci_A 210 EIILKAFKEIKKT-YSSLKLILVPRHIENAKIFEKKARDFGFKTSFFENLEGDVILVDRFGILKE----LYPVGKIAIVG 284 (374)
T ss_dssp HHHHHHHHHHHTT-CTTCEEEEEESSGGGHHHHHHHHHHTTCCEEETTCCCSSEEECCSSSCHHH----HGGGEEEEEEC
T ss_pred HHHHHHHHHHHhh-CCCcEEEEECCCHHHHHHHHHHHHHCCCceEEecCCCCcEEEECCHHHHHH----HHHhCCEEEEC
Confidence 4455555544321 12457888998776545567778877765431 1133343333222 23456766654
Q ss_pred cCCCCCCCCCchHHHhhhhCCCccc
Q psy13427 185 NTLTTVLEPNPAIGEAAKMCIPTVG 209 (268)
Q Consensus 185 d~~~~~~~d~~aI~EA~~l~IPtIa 209 (268)
... ...--..+-||..+|.|+|+
T Consensus 285 ss~--~e~gg~~~lEAmA~G~PVI~ 307 (374)
T 2xci_A 285 GTF--VNIGGHNLLEPTCWGIPVIY 307 (374)
T ss_dssp SSS--SSSCCCCCHHHHTTTCCEEE
T ss_pred Ccc--cCCCCcCHHHHHHhCCCEEE
Confidence 211 01113679999999999995
No 42
>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A*
Probab=60.57 E-value=20 Score=35.86 Aligned_cols=75 Identities=8% Similarity=-0.023 Sum_probs=49.7
Q ss_pred CCeEEEEeCChhhHHHHHHHHHHcCCceecCCcccCcccchhhhhccccCCCceeeeecCCCCCCCCC--------chHH
Q psy13427 127 DGIVLFVGQSAQNSLLIEKTAQDCQEFAHTRFWRQGMFTNSEKLFRAVTRLPDLVILTNTLTTVLEPN--------PAIG 198 (268)
Q Consensus 127 ~g~ILfV~t~~~~~~~V~~~A~~~g~~~i~~rW~gG~LTN~~~~~~~~~~~Pdlvivld~~~~~~~d~--------~aI~ 198 (268)
+++|+++.....+...+.+.....|.....-++--- . ....+|.||+..-..++.... .+|+
T Consensus 446 Gk~IlviD~gdsf~~~l~~~l~~~G~~v~Vv~~d~~-----~-----~~~~~DgIIlsGGPg~p~d~~~p~i~~~~~lI~ 515 (645)
T 3r75_A 446 GCRALIVDAEDHFTAMIAQQLSSLGLATEVCGVHDA-----V-----DLARYDVVVMGPGPGDPSDAGDPRIARLYAWLR 515 (645)
T ss_dssp TCEEEEEESSCTHHHHHHHHHHHTTCEEEEEETTCC-----C-----CGGGCSEEEECCCSSCTTCTTSHHHHHHHHHHH
T ss_pred CCEEEEEECCccHHHHHHHHHHHCCCEEEEEECCCc-----c-----cccCCCEEEECCCCCChhhhhhhhHHHHHHHHH
Confidence 568999999988888888888888865433222110 0 123589998875223333322 3567
Q ss_pred HhhhhCCCccccc
Q psy13427 199 EAAKMCIPTVGIV 211 (268)
Q Consensus 199 EA~~l~IPtIalv 211 (268)
++...++|+.|||
T Consensus 516 ~a~~~~iPiLGIC 528 (645)
T 3r75_A 516 HLIDEGKPFMAVC 528 (645)
T ss_dssp HHHHHTCCEEEET
T ss_pred HHHHCCCCEEEEC
Confidence 7888899999998
No 43
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=59.14 E-value=58 Score=28.00 Aligned_cols=109 Identities=8% Similarity=-0.018 Sum_probs=52.1
Q ss_pred HHHHHHHHHhCCCeEEEEeCChhhHHHHHHHHHHcCCceecCCcccCcccchhhhhccccCCCceeeeecCCCCCCCCCc
Q psy13427 116 ALNFVAHIAYRDGIVLFVGQSAQNSLLIEKTAQDCQEFAHTRFWRQGMFTNSEKLFRAVTRLPDLVILTNTLTTVLEPNP 195 (268)
Q Consensus 116 A~~~I~~i~~~~g~ILfV~t~~~~~~~V~~~A~~~g~~~i~~rW~gG~LTN~~~~~~~~~~~Pdlvivld~~~~~~~d~~ 195 (268)
|..-+..+...+..|.+|+... ...++.+++..+..++.+.|.++.| ...|+||.. | ++...+..
T Consensus 43 a~~ka~~Ll~~GA~VtVvap~~--~~~l~~l~~~~~i~~i~~~~~~~dL-----------~~adLVIaA-T-~d~~~N~~ 107 (223)
T 3dfz_A 43 ATRRIKGFLQEGAAITVVAPTV--SAEINEWEAKGQLRVKRKKVGEEDL-----------LNVFFIVVA-T-NDQAVNKF 107 (223)
T ss_dssp HHHHHHHHGGGCCCEEEECSSC--CHHHHHHHHTTSCEEECSCCCGGGS-----------SSCSEEEEC-C-CCTHHHHH
T ss_pred HHHHHHHHHHCCCEEEEECCCC--CHHHHHHHHcCCcEEEECCCCHhHh-----------CCCCEEEEC-C-CCHHHHHH
Confidence 3444455556677787777542 2334555555444433333333222 235666543 2 22223334
Q ss_pred hHHHhhhhCCCccccccCCCCCC----------ceeeeccCCCCchhHHHHHHHHH
Q psy13427 196 AIGEAAKMCIPTVGIVDSNCNPN----------LITYPVPGNDDTPSAIQYYCQVF 241 (268)
Q Consensus 196 aI~EA~~l~IPtIalvDTn~~p~----------~IdypIP~NddS~~SI~li~~lL 241 (268)
.-.+|. .|||+ -.+|.-...+ .+.+.|-.|-.|+.-...+-.-|
T Consensus 108 I~~~ak-~gi~V-NvvD~p~~~~f~~Paiv~rg~l~iaIST~G~sP~la~~iR~~i 161 (223)
T 3dfz_A 108 VKQHIK-NDQLV-NMASSFSDGNIQIPAQFSRGRLSLAISTDGASPLLTKRIKEDL 161 (223)
T ss_dssp HHHHSC-TTCEE-EC-----CCSEECCEEEEETTEEEEEECTTSCHHHHHHHHHHH
T ss_pred HHHHHh-CCCEE-EEeCCcccCeEEEeeEEEeCCEEEEEECCCCCcHHHHHHHHHH
Confidence 444454 99995 5566522221 24556666667776555444433
No 44
>3odp_A Putative tagatose-6-phosphate ketose/aldose isome; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE PG4; 2.35A {Clostridium novyi}
Probab=57.45 E-value=48 Score=30.75 Aligned_cols=41 Identities=22% Similarity=0.148 Sum_probs=26.7
Q ss_pred CCCceeeeecCCCCCCCCCchHHHhhhh--CCCccccccCCCC
Q psy13427 176 RLPDLVILTNTLTTVLEPNPAIGEAAKM--CIPTVGIVDSNCN 216 (268)
Q Consensus 176 ~~Pdlvivld~~~~~~~d~~aI~EA~~l--~IPtIalvDTn~~ 216 (268)
...|++|++.--....+--.|++.|+.. |.++|||++...+
T Consensus 107 ~~~dlvI~iS~SGeT~e~l~al~~ak~~~~Ga~~iaIT~~~~S 149 (393)
T 3odp_A 107 DEPTLLISCARSGNSPESTAAVTLAEKIVDDISHLIITCNSEG 149 (393)
T ss_dssp TSCEEEEEEESSSCCHHHHHHHHHHHHHCSSEEEEEEESCTTS
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHhhcCCCcEEEEECCCCC
Confidence 4667887776211111113577889998 9999999976443
No 45
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=57.15 E-value=13 Score=32.02 Aligned_cols=125 Identities=10% Similarity=0.009 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCChh--hH---HHHHHHHHHcCCceecCCcccCcccchhhhhccccCCCceeeeecCCC
Q psy13427 114 RDALNFVAHIAYRDGIVLFVGQSAQ--NS---LLIEKTAQDCQEFAHTRFWRQGMFTNSEKLFRAVTRLPDLVILTNTLT 188 (268)
Q Consensus 114 ~~A~~~I~~i~~~~g~ILfV~t~~~--~~---~~V~~~A~~~g~~~i~~rW~gG~LTN~~~~~~~~~~~Pdlvivld~~~ 188 (268)
+.+..++.+..-.-++|.|++.... .. +-.+++++..|..+.. .|... ..........+...||.||+.+-..
T Consensus 127 ~~~~~~l~~~~Pg~~~I~~i~~~~~~~~~~r~~g~~~al~~~gi~~~~-~~~~~-~~~~~~~~~~l~~~~dai~~~~D~~ 204 (302)
T 2qh8_A 127 EQHVELIKEILPNVKSIGVVYNPGEANAVSLMELLKLSAAKHGIKLVE-ATALK-SADVQSATQAIAEKSDVIYALIDNT 204 (302)
T ss_dssp HHHHHHHHHHSTTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTCEEEE-EECSS-GGGHHHHHHHHGGGCSEEEECSCHH
T ss_pred HHHHHHHHHhCCCCcEEEEEecCCCcchHHHHHHHHHHHHHcCCEEEE-EecCC-hHHHHHHHHHHhccCCEEEECCcHh
Confidence 3445555554224468988876532 11 3344566677765443 34322 1222222223345799998865100
Q ss_pred CCCCCCchHHH-hhhhCCCccccccCC-CCCCceeeeccCCCCchhHHHHHHHHH
Q psy13427 189 TVLEPNPAIGE-AAKMCIPTVGIVDSN-CNPNLITYPVPGNDDTPSAIQYYCQVF 241 (268)
Q Consensus 189 ~~~~d~~aI~E-A~~l~IPtIalvDTn-~~p~~IdypIP~NddS~~SI~li~~lL 241 (268)
-. .-..++.+ +...+||++|+-|.. ..|.+.++-.|.-.-+..+..+++.+|
T Consensus 205 a~-g~~~~l~~~~~~~~i~vig~d~~~~~~~~Lttv~~~~~~~G~~Aa~~l~~~l 258 (302)
T 2qh8_A 205 VA-SAIEGMIVAANQAKTPVFGAATSYVERGAIASLGFDYYQIGVQTADYVAAIL 258 (302)
T ss_dssp HH-TTHHHHHHHHHHTTCCEEESSHHHHHTTCSEEEECCHHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHcCCCEEECCHHHHhCCcEEEEeCCHHHHHHHHHHHHHHHH
Confidence 00 00122333 445799999986643 236677777666655666666555443
No 46
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=56.77 E-value=24 Score=31.77 Aligned_cols=91 Identities=16% Similarity=0.068 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEeCChhhHHHHHHHHHHcCCceec---CCccc-Ccccchh---hhhcc--------cc
Q psy13427 111 ELLRDALNFVAHIAYRDGIVLFVGQSAQNSLLIEKTAQDCQEFAHT---RFWRQ-GMFTNSE---KLFRA--------VT 175 (268)
Q Consensus 111 ~~L~~A~~~I~~i~~~~g~ILfV~t~~~~~~~V~~~A~~~g~~~i~---~rW~g-G~LTN~~---~~~~~--------~~ 175 (268)
=++..|+.+..++.+++-.|.|+++...... +.....|..+.. ..+.+ |.+.+.. ..+++ ..
T Consensus 14 GHi~palala~~L~~~g~~V~~vg~~~g~e~---~~v~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 90 (365)
T 3s2u_A 14 GHVFPALACAREFQARGYAVHWLGTPRGIEN---DLVPKAGLPLHLIQVSGLRGKGLKSLVKAPLELLKSLFQALRVIRQ 90 (365)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEECSSSTHH---HHTGGGTCCEEECC--------------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEECCchHhh---chhhhcCCcEEEEECCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566777777888788889999998764321 233344533221 11111 1222211 11111 12
Q ss_pred CCCceeeeecCCCCCCCCCchHHHhhhhCCCcc
Q psy13427 176 RLPDLVILTNTLTTVLEPNPAIGEAAKMCIPTV 208 (268)
Q Consensus 176 ~~Pdlvivld~~~~~~~d~~aI~EA~~l~IPtI 208 (268)
..||+|+.+.. ...-.++.-|..++||+|
T Consensus 91 ~~PDvVi~~g~----~~s~p~~laA~~~~iP~v 119 (365)
T 3s2u_A 91 LRPVCVLGLGG----YVTGPGGLAARLNGVPLV 119 (365)
T ss_dssp HCCSEEEECSS----STHHHHHHHHHHTTCCEE
T ss_pred cCCCEEEEcCC----cchHHHHHHHHHcCCCEE
Confidence 47999987652 112234566888999997
No 47
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=55.58 E-value=80 Score=27.60 Aligned_cols=91 Identities=11% Similarity=0.028 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHh-CCCeEEEEeCChh-hHHHHHHHHHHcCCceecCCcccCcccchhhhhccccCCCceeeeecCCC
Q psy13427 111 ELLRDALNFVAHIAY-RDGIVLFVGQSAQ-NSLLIEKTAQDCQEFAHTRFWRQGMFTNSEKLFRAVTRLPDLVILTNTLT 188 (268)
Q Consensus 111 ~~L~~A~~~I~~i~~-~~g~ILfV~t~~~-~~~~V~~~A~~~g~~~i~~rW~gG~LTN~~~~~~~~~~~Pdlvivld~~~ 188 (268)
..|.+|+..+..-.. .+-+++++|..+. ....+++.++..+ . ..+..|.+..... ......-|++++...
T Consensus 268 ~~li~a~~~l~~~~~~~~~~l~i~G~g~~~~~~~l~~~~~~~~-~---~~~~~g~~~~~~~--~~~~~~adv~v~ps~-- 339 (439)
T 3fro_A 268 DVLLKAIEILSSKKEFQEMRFIIIGKGDPELEGWARSLEEKHG-N---VKVITEMLSREFV--RELYGSVDFVIIPSY-- 339 (439)
T ss_dssp HHHHHHHHHHHTSGGGGGEEEEEECCCCHHHHHHHHHHHHHCT-T---EEEECSCCCHHHH--HHHHTTCSEEEECBS--
T ss_pred HHHHHHHHHHHhcccCCCeEEEEEcCCChhHHHHHHHHHhhcC-C---EEEEcCCCCHHHH--HHHHHHCCEEEeCCC--
Confidence 344445544433110 3566788887653 3356677777776 2 2234554444221 122345677665442
Q ss_pred CCCCCCchHHHhhhhCCCcccc
Q psy13427 189 TVLEPNPAIGEAAKMCIPTVGI 210 (268)
Q Consensus 189 ~~~~d~~aI~EA~~l~IPtIal 210 (268)
...-..++.||..+|+|+|+-
T Consensus 340 -~e~~~~~~~EAma~G~Pvi~s 360 (439)
T 3fro_A 340 -FEPFGLVALEAMCLGAIPIAS 360 (439)
T ss_dssp -CCSSCHHHHHHHHTTCEEEEE
T ss_pred -CCCccHHHHHHHHCCCCeEEc
Confidence 122357899999999999985
No 48
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Probab=48.19 E-value=78 Score=29.77 Aligned_cols=62 Identities=15% Similarity=0.070 Sum_probs=34.2
Q ss_pred CceeeeecCCCCCCCCCchHHHhhhhCCCccccccCCCCC----------CceeeeccCCCCchhHHHHHHHHHH
Q psy13427 178 PDLVILTNTLTTVLEPNPAIGEAAKMCIPTVGIVDSNCNP----------NLITYPVPGNDDTPSAIQYYCQVFK 242 (268)
Q Consensus 178 Pdlvivld~~~~~~~d~~aI~EA~~l~IPtIalvDTn~~p----------~~IdypIP~NddS~~SI~li~~lL~ 242 (268)
.|+||. .| +++..|.....+|...|||+ -++|.--.. ..+.+.|=.|-+|+.-...+-..|.
T Consensus 73 ~~lVi~-at-~~~~~n~~i~~~a~~~~i~v-n~~d~~e~~~~~~pa~~~~~~l~iaIsT~Gksp~la~~ir~~ie 144 (457)
T 1pjq_A 73 CWLAIA-AT-DDDTVNQRVSDAAESRRIFC-NVVDAPKAASFIMPSIIDRSPLMVAVSSGGTSPVLARLLREKLE 144 (457)
T ss_dssp CSEEEE-CC-SCHHHHHHHHHHHHHTTCEE-EETTCTTSSSEECCEEEEETTEEEEEECTTSCHHHHHHHHHHHH
T ss_pred ccEEEE-cC-CCHHHHHHHHHHHHHcCCEE-EECCCcccCceEeeeEEEeCCeEEEEECCCCChHHHHHHHHHHH
Confidence 455554 33 22223677889999999996 222321111 1235666677778775555544443
No 49
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=47.40 E-value=43 Score=28.19 Aligned_cols=60 Identities=13% Similarity=0.014 Sum_probs=38.0
Q ss_pred cCCCceeeeecCCCCCCCCCchHHHhhhhCCCccccccCCCCCCceeeeccCCCCchhHHHHHHHHHH
Q psy13427 175 TRLPDLVILTNTLTTVLEPNPAIGEAAKMCIPTVGIVDSNCNPNLITYPVPGNDDTPSAIQYYCQVFK 242 (268)
Q Consensus 175 ~~~Pdlvivld~~~~~~~d~~aI~EA~~l~IPtIalvDTn~~p~~IdypIP~NddS~~SI~li~~lL~ 242 (268)
.+.+|.||+..+ ..+...+.++...+||+|.+ |...+...+++.-. |...+.......|.
T Consensus 64 ~~~vdgiIi~~~----~~~~~~~~~l~~~~iPvV~i-~~~~~~~~~~~V~~---D~~~~g~~a~~~L~ 123 (288)
T 3gv0_A 64 TGSADGVIISKI----EPNDPRVRFMTERNMPFVTH-GRSDMGIEHAFHDF---DNEAYAYEAVERLA 123 (288)
T ss_dssp HTCCSEEEEESC----CTTCHHHHHHHHTTCCEEEE-SCCCSSCCCEEEEE---CHHHHHHHHHHHHH
T ss_pred cCCccEEEEecC----CCCcHHHHHHhhCCCCEEEE-CCcCCCCCCcEEEe---CcHHHHHHHHHHHH
Confidence 367899998763 33446788888899999865 66554444555433 34455555555544
No 50
>2bpl_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; amidotransferase, ammonia channeling, glucosamine 6- phosphate synthase; HET: F6R; 2.05A {Escherichia coli} SCOP: c.80.1.1 d.153.1.1 PDB: 1jxa_A* 2j6h_A* 2vf4_X 2vf5_X* 3ooj_A*
Probab=46.70 E-value=26 Score=34.35 Aligned_cols=117 Identities=5% Similarity=0.007 Sum_probs=59.4
Q ss_pred hCCCeEEEEeCChhhH--HHHHHHHHH-cCCceecCCcccCcccchhhhhccccCCCceeeeecCCCCCCCCCchHHHhh
Q psy13427 125 YRDGIVLFVGQSAQNS--LLIEKTAQD-CQEFAHTRFWRQGMFTNSEKLFRAVTRLPDLVILTNTLTTVLEPNPAIGEAA 201 (268)
Q Consensus 125 ~~~g~ILfV~t~~~~~--~~V~~~A~~-~g~~~i~~rW~gG~LTN~~~~~~~~~~~Pdlvivld~~~~~~~d~~aI~EA~ 201 (268)
.+.++|.|+|...... ...+.+..+ .|..... ..++-+ ..........|++|++..-....+--.+++.|+
T Consensus 290 ~~~~~I~i~G~G~S~~~a~~~~~~~~~~~~~~~~~--~~~~e~----~~~~~~~~~~dlvI~iS~SG~T~e~l~a~~~ak 363 (608)
T 2bpl_A 290 SKVEHIQILACGTSYNSGMVSRYWFESLAGIPCDV--EIASEF----RYRKSAVRRNSLMITLSQSGETADTLAGLRLSK 363 (608)
T ss_dssp HHCCEEEEEECHHHHHHHHHHHHHHHHHSCCCEEE--EEHHHH----TTSCCCCCTTEEEEEEESSSCCHHHHHHHHHHH
T ss_pred cCCCEEEEEEehHHHHHHHHHHHHHHHHhCCCEEE--EehhHh----hccCCCCCCCCEEEEEeCCcCCHHHHHHHHHHH
Confidence 4557899999875332 233334444 4433211 011111 000012346788887763111112246888999
Q ss_pred hhC-CCccccccCCCCC----CceeeeccCCC-------CchhHHHHHHHHHHHHHHh
Q psy13427 202 KMC-IPTVGIVDSNCNP----NLITYPVPGND-------DTPSAIQYYCQVFKTAILK 247 (268)
Q Consensus 202 ~l~-IPtIalvDTn~~p----~~IdypIP~Nd-------dS~~SI~li~~lL~~aIl~ 247 (268)
+.| +|+|+|++...++ ..+.+.+|+.. +|..+.-+++.+|+.++..
T Consensus 364 ~~G~a~~IaIT~~~~S~La~~ad~~l~~~~~~E~~~a~t~s~t~~l~~~~lL~~~l~~ 421 (608)
T 2bpl_A 364 ELGYLGSLAICNVPGSSLVRESDLALMTNAGTEIGVASTKAFTTQLTVLLMLVAKLSK 421 (608)
T ss_dssp HTTCSEEEEEESSTTCHHHHHSSEEEECCCCCCCSSSCSHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCCeEEEEECCCCCHHHHhcCEEEEecCCceeeecchHHHHHHHHHHHHHHHHHHH
Confidence 999 9999998865443 22344444322 2333444455555555443
No 51
>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*
Probab=44.98 E-value=48 Score=28.83 Aligned_cols=79 Identities=9% Similarity=-0.059 Sum_probs=45.9
Q ss_pred CCeEEEEeC-ChhhHHHHHHHHHHcCCceecCC-cccCcccchhhhhccccCCCceeeeecCCCCCCCC-------CchH
Q psy13427 127 DGIVLFVGQ-SAQNSLLIEKTAQDCQEFAHTRF-WRQGMFTNSEKLFRAVTRLPDLVILTNTLTTVLEP-------NPAI 197 (268)
Q Consensus 127 ~g~ILfV~t-~~~~~~~V~~~A~~~g~~~i~~r-W~gG~LTN~~~~~~~~~~~Pdlvivld~~~~~~~d-------~~aI 197 (268)
+++|+++-. ....-..+....+..|..+..-+ +.+..+.. ....+|.||+..--.++..+ ...|
T Consensus 3 ~~~vliiqh~~~e~~~~i~~~l~~~G~~v~v~~~~~~~~~p~-------~~~~~d~lIl~GGp~~~~d~~~~~~~~~~~i 75 (250)
T 3m3p_A 3 LKPVMIIQFSASEGPGHFGDFLAGEHIPFQVLRMDRSDPLPA-------EIRDCSGLAMMGGPMSANDDLPWMPTLLALI 75 (250)
T ss_dssp CCCEEEEESSSSCCCHHHHHHHHHTTCCEEEEEGGGTCCCCS-------CGGGSSEEEECCCSSCTTSCCTTHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHCCCeEEEEeccCCCcCcC-------ccccCCEEEECCCCCcccccchHHHHHHHHH
Confidence 456777754 43555677778888886543322 22222221 12358888887632222211 2456
Q ss_pred HHhhhhCCCcccccc
Q psy13427 198 GEAAKMCIPTVGIVD 212 (268)
Q Consensus 198 ~EA~~l~IPtIalvD 212 (268)
+++...++|+.|||=
T Consensus 76 ~~~~~~~~PvlGIC~ 90 (250)
T 3m3p_A 76 RDAVAQRVPVIGHCL 90 (250)
T ss_dssp HHHHHHTCCEEEETH
T ss_pred HHHHHcCCCEEEECH
Confidence 777788999999984
No 52
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=44.46 E-value=1.2e+02 Score=26.46 Aligned_cols=129 Identities=13% Similarity=0.096 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHHHH---------H-hCCCeEEEEeC--------ChhhHHHHHHHHHHcCCceecCCcccCccc-ch
Q psy13427 107 DQSAELLRDALNFVAHI---------A-YRDGIVLFVGQ--------SAQNSLLIEKTAQDCQEFAHTRFWRQGMFT-NS 167 (268)
Q Consensus 107 ~~T~~~L~~A~~~I~~i---------~-~~~g~ILfV~t--------~~~~~~~V~~~A~~~g~~~i~~rW~gG~LT-N~ 167 (268)
+.|.++..+|+.-+... . .+.+.|-++-. ++++..++.-+.+.+..+-+.=.+..+.-. ..
T Consensus 38 ~~tr~rV~~~a~~lgY~~pn~~a~~l~~~~s~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~g~~~~~~~~~~~~~~~~ 117 (366)
T 3h5t_A 38 AELRQRILDTAEDMGYLGPDPVARSLRTRRAGAIGVLLTEDLTYAFEDMASVDFLAGVAQAAGDTQLTLIPASPASSVDH 117 (366)
T ss_dssp HHHHHHHHHHHHHTTC--------------CCEEEEEESSCTTHHHHSHHHHHHHHHHHHHSSSCEEEEEECCCCTTCCH
T ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHhhcCCCCEEEEEecCCccccccCHHHHHHHHHHHHHHhhCCEEEEEcCCCccHHH
Confidence 67888887777655433 1 22345655443 334455555444444322111112221111 11
Q ss_pred hhhhc-cccCCCceeeeecCCCCCCCCCchHHHhhhhCCCccccccCCCCCCceeeeccCCCCchhHHHHHHHHHHH
Q psy13427 168 EKLFR-AVTRLPDLVILTNTLTTVLEPNPAIGEAAKMCIPTVGIVDSNCNPNLITYPVPGNDDTPSAIQYYCQVFKT 243 (268)
Q Consensus 168 ~~~~~-~~~~~Pdlvivld~~~~~~~d~~aI~EA~~l~IPtIalvDTn~~p~~IdypIP~NddS~~SI~li~~lL~~ 243 (268)
..... -..+.+|.||+... ..+...+.++...+||+|.+ |...+...+++... |...+.......|.+
T Consensus 118 ~~~~~~l~~~~vdGiIi~~~----~~~~~~~~~l~~~~iPvV~i-~~~~~~~~~~~V~~---D~~~~~~~a~~~L~~ 186 (366)
T 3h5t_A 118 VSAQQLVNNAAVDGVVIYSV----AKGDPHIDAIRARGLPAVIA-DQPAREEGMPFIAP---NNRKAIAPAAQALID 186 (366)
T ss_dssp HHHHHHHHTCCCSCEEEESC----CTTCHHHHHHHHHTCCEEEE-SSCCSCTTCCEEEE---CHHHHTHHHHHHHHH
T ss_pred HHHHHHHHhCCCCEEEEecC----CCChHHHHHHHHCCCCEEEE-CCccCCCCCCEEEe---ChHHHHHHHHHHHHH
Confidence 11111 12467899988753 34456788888899999865 66554444555432 345555555555543
No 53
>3c3j_A Putative tagatose-6-phosphate ketose/aldose isome; tagatose-6-phosphate ketose/aldose isomerase, structural GEN PSI, MCSG; 1.80A {Escherichia coli}
Probab=44.16 E-value=38 Score=30.99 Aligned_cols=42 Identities=17% Similarity=0.054 Sum_probs=28.1
Q ss_pred CCCceeeeecCCCCCCCCCchHHHhhhh--CCCccccccCCCCC
Q psy13427 176 RLPDLVILTNTLTTVLEPNPAIGEAAKM--CIPTVGIVDSNCNP 217 (268)
Q Consensus 176 ~~Pdlvivld~~~~~~~d~~aI~EA~~l--~IPtIalvDTn~~p 217 (268)
...|++|++..-....+--.+++.|+.. |.++|+|++...++
T Consensus 102 ~~~dlvI~iS~SG~T~e~l~a~~~ak~~~~ga~~iaIT~~~~S~ 145 (384)
T 3c3j_A 102 AHPLLLISFGRSGNSPESVAAVELANQFVPECYHLPITCNEAGA 145 (384)
T ss_dssp TSCEEEEEEESSSCCHHHHHHHHHHHHHCSSEEEEEEESCTTSH
T ss_pred CCCeEEEEEeCCcCCHHHHHHHHHHHhhCCCCCEEEEECCCCCH
Confidence 4678888877311111224678888888 99999999875443
No 54
>2e5f_A Hypothetical protein PH0510; structural genomics, sugar binding protein, NPPSFA, national on protein structural and functional analyses; 1.35A {Pyrococcus horikoshii} PDB: 2dec_A* 2df8_A 2cb0_A*
Probab=43.30 E-value=22 Score=31.84 Aligned_cols=111 Identities=11% Similarity=0.023 Sum_probs=53.3
Q ss_pred hCCCeEEEEeCChhh--HHHHHHHHHH-cCCceecCCcccCcccchhhhhccccCCCceeeeecCCCCCCCC-CchHHHh
Q psy13427 125 YRDGIVLFVGQSAQN--SLLIEKTAQD-CQEFAHTRFWRQGMFTNSEKLFRAVTRLPDLVILTNTLTTVLEP-NPAIGEA 200 (268)
Q Consensus 125 ~~~g~ILfV~t~~~~--~~~V~~~A~~-~g~~~i~~rW~gG~LTN~~~~~~~~~~~Pdlvivld~~~~~~~d-~~aI~EA 200 (268)
.+.++|.|+|..... ....+....+ .|.. +. ..++.+ ..... .-....||++|++.--.. ..+ -.+++.|
T Consensus 29 ~~~~~I~i~G~G~S~~~a~~~~~~l~~~~g~~-v~--~~~se~-~~~~~-~~~~~~~dlvI~iS~SG~-T~e~l~a~~~a 102 (325)
T 2e5f_A 29 SLPNRILYLGCGSSHFLSKLLAMVTNMHGGLG-IA--LPCSEF-LYSKE-TYPIGEVELAVGISRSGE-TTEILLALEKI 102 (325)
T ss_dssp CCCSEEEEEESTHHHHHHHHHHHHHHHTTSEE-EE--EEHHHH-HHHGG-GSCCCSCSEEEEECSSSC-CHHHHHHHHTC
T ss_pred hCCCEEEEEEChHHHHHHHHHHHHHHHHhCCC-EE--EechHH-hhcCc-ccCCCCCeEEEEEeCCCC-CHHHHHHHHHh
Confidence 556789999987642 2223333334 4532 11 222222 00100 001235689988873111 111 1233333
Q ss_pred hhhCCCccccccCCCCC----CceeeeccCCCCc------hhHHHHHHHHHHHHH
Q psy13427 201 AKMCIPTVGIVDSNCNP----NLITYPVPGNDDT------PSAIQYYCQVFKTAI 245 (268)
Q Consensus 201 ~~l~IPtIalvDTn~~p----~~IdypIP~NddS------~~SI~li~~lL~~aI 245 (268)
+ .++|+|++. .++ ..+.+.+|+++.+ ..+.-+++.+|...+
T Consensus 103 k---a~viaIT~~-~S~La~~ad~~l~~~~~e~~~a~t~s~~~~l~~l~~L~~~~ 153 (325)
T 2e5f_A 103 N---VKKLGITTR-ESSLTRMCDYSLVVPAIEESVVMTHSFTSFYFAYLQLLRYS 153 (325)
T ss_dssp C---SCEEEEESS-SCHHHHHSSEEEECCCCCCSSSCCHHHHHHHHHHHHHHHHH
T ss_pred C---CCEEEEECC-CCHHHHhcCEEEecCCccceecccHHHHHHHHHHHHHHHHH
Confidence 3 999999988 444 2345555664433 224444445555444
No 55
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=42.07 E-value=54 Score=27.56 Aligned_cols=113 Identities=14% Similarity=0.053 Sum_probs=56.3
Q ss_pred CCCeEEEEeCC---hhhH---HHHHHHHHHcCCceecCCcccCcccchhhhhc-cccCCCceeeeecCCCCCCCCCchHH
Q psy13427 126 RDGIVLFVGQS---AQNS---LLIEKTAQDCQEFAHTRFWRQGMFTNSEKLFR-AVTRLPDLVILTNTLTTVLEPNPAIG 198 (268)
Q Consensus 126 ~~g~ILfV~t~---~~~~---~~V~~~A~~~g~~~i~~rW~gG~LTN~~~~~~-~~~~~Pdlvivld~~~~~~~d~~aI~ 198 (268)
++++|.++... +.+. .-+++.|+..|...+.-....+.......... -..+.+|.||+... +.......++
T Consensus 3 ~~~~I~~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~--~~~~~~~~~~ 80 (305)
T 3g1w_A 3 LNETYMMITFQSGMDYWKRCLKGFEDAAQALNVTVEYRGAAQYDIQEQITVLEQAIAKNPAGIAISAI--DPVELTDTIN 80 (305)
T ss_dssp --CEEEEEESSTTSTHHHHHHHHHHHHHHHHTCEEEEEECSSSCHHHHHHHHHHHHHHCCSEEEECCS--STTTTHHHHH
T ss_pred CCceEEEEEccCCChHHHHHHHHHHHHHHHcCCEEEEeCCCcCCHHHHHHHHHHHHHhCCCEEEEcCC--CHHHHHHHHH
Confidence 45666666543 3444 34556777777543320011111111111111 12357999988642 1122245788
Q ss_pred HhhhhCCCccccccCCCCCC-ceeeeccCCCCchhHHHHHHHHHHHH
Q psy13427 199 EAAKMCIPTVGIVDSNCNPN-LITYPVPGNDDTPSAIQYYCQVFKTA 244 (268)
Q Consensus 199 EA~~l~IPtIalvDTn~~p~-~IdypIP~NddS~~SI~li~~lL~~a 244 (268)
++...|||+|.+ |++.+.. .+++.-+ |...+.......|.+.
T Consensus 81 ~~~~~~iPvV~~-~~~~~~~~~~~~V~~---d~~~~g~~~~~~l~~~ 123 (305)
T 3g1w_A 81 KAVDAGIPIVLF-DSGAPDSHAHSFLGT---NNYNAGMNAAYKMAEL 123 (305)
T ss_dssp HHHHTTCCEEEE-SSCCTTSCCSCEEEC---CHHHHHHHHHHHHHHH
T ss_pred HHHHCCCcEEEE-CCCCCCCceeEEECc---CHHHHHHHHHHHHHHH
Confidence 899999999876 5544432 3555432 3455555555555443
No 56
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=40.61 E-value=79 Score=29.04 Aligned_cols=105 Identities=10% Similarity=0.067 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEeCChhhHHHHHHHHHHcCCceecCCcccCccc-chhh------hh-----cc--c
Q psy13427 109 SAELLRDALNFVAHIAYRDGIVLFVGQSAQNSLLIEKTAQDCQEFAHTRFWRQGMFT-NSEK------LF-----RA--V 174 (268)
Q Consensus 109 T~~~L~~A~~~I~~i~~~~g~ILfV~t~~~~~~~V~~~A~~~g~~~i~~rW~gG~LT-N~~~------~~-----~~--~ 174 (268)
+.-++...-+++..+...+.+||+++...+.-.+++.++...|-.|. |.-|.+.. ..+. ++ ++ .
T Consensus 107 ~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~--RlDG~~~~~~~k~~~~~~~i~Lltsag~~gi 184 (328)
T 3hgt_A 107 NSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIK--RYDGHSIKSAAAANDFSCTVHLFSSEGINFT 184 (328)
T ss_dssp TCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEE--ESSSCCC-------CCSEEEEEEESSCCCTT
T ss_pred cCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceE--eCCCCchhhhhhcccCCceEEEEECCCCCCc
Confidence 44455555567777777889999999988888999999987665442 22222111 1000 00 11 1
Q ss_pred ------cCCCceeeeecCCCCCCCC-CchH----HH--hhhhCCCccccccCCC
Q psy13427 175 ------TRLPDLVILTNTLTTVLEP-NPAI----GE--AAKMCIPTVGIVDSNC 215 (268)
Q Consensus 175 ------~~~Pdlvivld~~~~~~~d-~~aI----~E--A~~l~IPtIalvDTn~ 215 (268)
..-+|.||++|+--|+..| -||+ |. ..+...||+=++-+++
T Consensus 185 n~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~T 238 (328)
T 3hgt_A 185 KYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINS 238 (328)
T ss_dssp TSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTS
T ss_pred CcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCC
Confidence 3679999999975455554 4555 33 2345678888876665
No 57
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}
Probab=38.70 E-value=86 Score=30.51 Aligned_cols=80 Identities=20% Similarity=0.144 Sum_probs=49.1
Q ss_pred CCCeEEEEeCChhhHHHHHHHHHHcCCceecCCcccCcccchhhhhccccCCCceeeeecCCCCCCC------CCchHHH
Q psy13427 126 RDGIVLFVGQSAQNSLLIEKTAQDCQEFAHTRFWRQGMFTNSEKLFRAVTRLPDLVILTNTLTTVLE------PNPAIGE 199 (268)
Q Consensus 126 ~~g~ILfV~t~~~~~~~V~~~A~~~g~~~i~~rW~gG~LTN~~~~~~~~~~~Pdlvivld~~~~~~~------d~~aI~E 199 (268)
...+|+++....+....|.+..+..|.+...-.| . +..... ....||.||+..--.++.. +..+++.
T Consensus 6 ~~~~IlilD~Gs~~~~~I~r~lre~Gv~~eiv~~---~-~~~~~i---~~~~~dgIIlsGGp~s~~~~~~~~~~~~l~~~ 78 (556)
T 3uow_A 6 EYDKILVLNFGSQYFHLIVKRLNNIKIFSETKDY---G-VELKDI---KDMNIKGVILSGGPYSVTEAGSPHLKKEVFEY 78 (556)
T ss_dssp -CCEEEEEESSCTTHHHHHHHHHHTTCCEEEEET---T-CCGGGT---TTSCEEEEEECCCSCCTTSTTCCCCCHHHHHH
T ss_pred CCCEEEEEECCCccHHHHHHHHHHCCCeEEEEEC---C-CCHHHH---hhcCCCEEEECCCCCcccccCCcchhHHHHHH
Confidence 4467999999998888888888899987543222 1 122221 1236899988762122211 1223333
Q ss_pred hhhhCCCcccccc
Q psy13427 200 AAKMCIPTVGIVD 212 (268)
Q Consensus 200 A~~l~IPtIalvD 212 (268)
|...++|+.|||=
T Consensus 79 a~~~g~PvLGIC~ 91 (556)
T 3uow_A 79 FLEKKIPIFGICY 91 (556)
T ss_dssp HHHTTCCEEEETH
T ss_pred hhhcCCCEEEECH
Confidence 4555999999983
No 58
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=37.97 E-value=1.7e+02 Score=24.23 Aligned_cols=61 Identities=11% Similarity=0.024 Sum_probs=36.5
Q ss_pred cCCCceeeeecCCCCCCCCCchHHHhhhhCCCccccccCCCCCCceeeeccCCCCchhHHHHHHHHHHH
Q psy13427 175 TRLPDLVILTNTLTTVLEPNPAIGEAAKMCIPTVGIVDSNCNPNLITYPVPGNDDTPSAIQYYCQVFKT 243 (268)
Q Consensus 175 ~~~Pdlvivld~~~~~~~d~~aI~EA~~l~IPtIalvDTn~~p~~IdypIP~NddS~~SI~li~~lL~~ 243 (268)
.+.+|.||+... ..+...+.++...+||+|.+ |+..+...+++.-+ |...+.......|.+
T Consensus 62 ~~~vdgiIi~~~----~~~~~~~~~l~~~~iPvV~~-~~~~~~~~~~~V~~---D~~~~g~~a~~~L~~ 122 (287)
T 3bbl_A 62 SGNVDGFVLSSI----NYNDPRVQFLLKQKFPFVAF-GRSNPDWDFAWVDI---DGTAGTRQAVEYLIG 122 (287)
T ss_dssp TTCCSEEEECSC----CTTCHHHHHHHHTTCCEEEE-SCCSTTCCCCEEEE---CHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEeec----CCCcHHHHHHHhcCCCEEEE-CCcCCCCCCCEEEe---ccHHHHHHHHHHHHH
Confidence 457899888653 22335778888889999876 55433223444322 345555555555544
No 59
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=37.79 E-value=72 Score=26.86 Aligned_cols=61 Identities=15% Similarity=0.121 Sum_probs=38.9
Q ss_pred cCCCceeeeecCCCCCCCCCchHHHhhhhCCCccccccCCCCCCceeeeccCCCCchhHHHHHHHHHHH
Q psy13427 175 TRLPDLVILTNTLTTVLEPNPAIGEAAKMCIPTVGIVDSNCNPNLITYPVPGNDDTPSAIQYYCQVFKT 243 (268)
Q Consensus 175 ~~~Pdlvivld~~~~~~~d~~aI~EA~~l~IPtIalvDTn~~p~~IdypIP~NddS~~SI~li~~lL~~ 243 (268)
.+..|.||+... ..+...+.++...+||+|.+ |...+...+++... |...+.......|.+
T Consensus 63 ~~~vdGiIi~~~----~~~~~~~~~l~~~~iPvV~~-~~~~~~~~~~~V~~---D~~~~~~~a~~~L~~ 123 (294)
T 3qk7_A 63 TRRVDALIVAHT----QPEDFRLQYLQKQNFPFLAL-GRSHLPKPYAWFDF---DNHAGASLAVKRLLE 123 (294)
T ss_dssp HTCCSEEEECSC----CSSCHHHHHHHHTTCCEEEE-SCCCCSSCCEEEEE---CHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEeCC----CCChHHHHHHHhCCCCEEEE-CCCCCCCCCCEEEc---ChHHHHHHHHHHHHH
Confidence 357899988763 23446788889999999865 55544444666433 345555555555543
No 60
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=37.16 E-value=22 Score=31.11 Aligned_cols=63 Identities=16% Similarity=0.071 Sum_probs=37.8
Q ss_pred CCCceeeeecCCCCCCCCCchHHHhhhhCCCccccccCCCCCCc--------------eeeeccCCCCchhHHHHHHHHH
Q psy13427 176 RLPDLVILTNTLTTVLEPNPAIGEAAKMCIPTVGIVDSNCNPNL--------------ITYPVPGNDDTPSAIQYYCQVF 241 (268)
Q Consensus 176 ~~Pdlvivld~~~~~~~d~~aI~EA~~l~IPtIalvDTn~~p~~--------------IdypIP~NddS~~SI~li~~lL 241 (268)
+.+|.||+... ......+++++...|||+|.+ |+..+... +.+.-+ |...+-......|
T Consensus 61 ~~vDgiIi~~~---~~~~~~~~~~~~~~giPvV~~-~~~~~~~~~~~~~~~~~~~~~~~~~V~~---D~~~~g~~a~~~L 133 (350)
T 3h75_A 61 DKPDYLMLVNE---QYVAPQILRLSQGSGIKLFIV-NSPLTLDQRELIGQSRQNYSDWIGSMVG---DDEEAGYRMLKEL 133 (350)
T ss_dssp SCCSEEEEECC---SSHHHHHHHHHTTSCCEEEEE-ESCCCTTTC------------CEEEEEC---CHHHHHHHHHHHH
T ss_pred CCCCEEEEeCc---hhhHHHHHHHHHhCCCcEEEE-cCCCChHHHhhhcCCchhccceeeeecC---ChHHHHHHHHHHH
Confidence 48999998741 122345678888899999976 44443332 455433 3455555555555
Q ss_pred HHHH
Q psy13427 242 KTAI 245 (268)
Q Consensus 242 ~~aI 245 (268)
.+..
T Consensus 134 ~~~g 137 (350)
T 3h75_A 134 LHKL 137 (350)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5444
No 61
>2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1
Probab=36.47 E-value=32 Score=28.75 Aligned_cols=74 Identities=12% Similarity=-0.043 Sum_probs=43.4
Q ss_pred eEEEEeCChhhHHHHHHHHHHcCCceecCCcccCcccchhhhhccccCCCceeeeecC-CCCCCCC---CchHHHhhhhC
Q psy13427 129 IVLFVGQSAQNSLLIEKTAQDCQEFAHTRFWRQGMFTNSEKLFRAVTRLPDLVILTNT-LTTVLEP---NPAIGEAAKMC 204 (268)
Q Consensus 129 ~ILfV~t~~~~~~~V~~~A~~~g~~~i~~rW~gG~LTN~~~~~~~~~~~Pdlvivld~-~~~~~~d---~~aI~EA~~l~ 204 (268)
+|+++.....+...+.++.++.|...+.-++.. .... ...+|.||+..- -.++..+ ....+++...+
T Consensus 15 ~i~~id~~~~~~~~~~~~l~~~G~~~~vv~~~~----~~~~-----l~~~DglIl~GG~p~~~~~~~~~~~l~~~~~~~~ 85 (212)
T 2a9v_A 15 KIYVVDNGGQWTHREWRVLRELGVDTKIVPNDI----DSSE-----LDGLDGLVLSGGAPNIDEELDKLGSVGKYIDDHN 85 (212)
T ss_dssp BEEEEEESCCTTCHHHHHHHHTTCBCCEEETTS----CGGG-----GTTCSEEEEEEECSCGGGTGGGHHHHHHHHHHCC
T ss_pred eEEEEeCCCccHHHHHHHHHHCCCEEEEEeCCC----CHHH-----HhCCCEEEECCCCCCCCcccccchhHHHHHHhCC
Confidence 588888877666667777777776543222210 1221 123899988763 1222221 23455666778
Q ss_pred CCccccc
Q psy13427 205 IPTVGIV 211 (268)
Q Consensus 205 IPtIalv 211 (268)
+|+.|+|
T Consensus 86 ~PiLGIC 92 (212)
T 2a9v_A 86 YPILGIC 92 (212)
T ss_dssp SCEEEET
T ss_pred CCEEEEC
Confidence 9999998
No 62
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=35.91 E-value=71 Score=26.90 Aligned_cols=64 Identities=14% Similarity=0.118 Sum_probs=37.6
Q ss_pred cCCCceeeeecCCCCCCCCCchHHHhhhhCCCccccccCCCCC----CceeeeccCCCCchhHHHHHHHHHHHH
Q psy13427 175 TRLPDLVILTNTLTTVLEPNPAIGEAAKMCIPTVGIVDSNCNP----NLITYPVPGNDDTPSAIQYYCQVFKTA 244 (268)
Q Consensus 175 ~~~Pdlvivld~~~~~~~d~~aI~EA~~l~IPtIalvDTn~~p----~~IdypIP~NddS~~SI~li~~lL~~a 244 (268)
.+.+|.||+... +...-..+++++...|||+|.+ |++.+. ..+++.-+ |...+.......|.+.
T Consensus 59 ~~~vdgiii~~~--~~~~~~~~~~~~~~~giPvV~~-~~~~~~~~~~~~~~~V~~---D~~~~g~~a~~~l~~~ 126 (297)
T 3rot_A 59 ATYPSGIATTIP--SDTAFSKSLQRANKLNIPVIAV-DTRPKDKTKNPYLVFLGS---DNLLAGKKLGEKALEL 126 (297)
T ss_dssp HTCCSEEEECCC--CSSTTHHHHHHHHHHTCCEEEE-SCCCSCTTTSCCSCEEEC---CHHHHHHHHHHHHHHH
T ss_pred HcCCCEEEEeCC--CHHHHHHHHHHHHHCCCCEEEE-cCCCccccccCcceEEcc---ChHHHHHHHHHHHHHh
Confidence 356899887642 1111256788899999999876 554433 33445433 3455555555555443
No 63
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=35.69 E-value=43 Score=27.48 Aligned_cols=73 Identities=14% Similarity=0.092 Sum_probs=43.2
Q ss_pred CeEEEEeCChhhHHHHHHHHHHcCCceecCCcccCcccchhhhhccccCCCceeeeecCCCCC-----CCCCchHHHhhh
Q psy13427 128 GIVLFVGQSAQNSLLIEKTAQDCQEFAHTRFWRQGMFTNSEKLFRAVTRLPDLVILTNTLTTV-----LEPNPAIGEAAK 202 (268)
Q Consensus 128 g~ILfV~t~~~~~~~V~~~A~~~g~~~i~~rW~gG~LTN~~~~~~~~~~~Pdlvivld~~~~~-----~~d~~aI~EA~~ 202 (268)
++|++|....+.-..|.++.++.|+.... ..+.... ...|.||+-.+-... ......++++..
T Consensus 3 ~~I~iiD~g~~n~~si~~al~~~G~~~~v-------~~~~~~l-----~~~D~lilPG~g~~~~~~~~~~~~~~i~~~~~ 70 (211)
T 4gud_A 3 QNVVIIDTGCANISSVKFAIERLGYAVTI-------SRDPQVV-----LAADKLFLPGVGTASEAMKNLTERDLIELVKR 70 (211)
T ss_dssp CCEEEECCCCTTHHHHHHHHHHTTCCEEE-------ECCHHHH-----HHCSEEEECCCSCHHHHHHHHHHTTCHHHHHH
T ss_pred CEEEEEECCCChHHHHHHHHHHCCCEEEE-------ECCHHHH-----hCCCEEEECCCCCHHHHHHHHHhcChHHHHHH
Confidence 46888877665556677778888876542 1333332 236777774321100 011234667777
Q ss_pred hCCCcccccc
Q psy13427 203 MCIPTVGIVD 212 (268)
Q Consensus 203 l~IPtIalvD 212 (268)
.++|+.|+|=
T Consensus 71 ~~~PvlGICl 80 (211)
T 4gud_A 71 VEKPLLGICL 80 (211)
T ss_dssp CCSCEEEETH
T ss_pred cCCCEEEEch
Confidence 8999999983
No 64
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=35.20 E-value=96 Score=27.21 Aligned_cols=97 Identities=11% Similarity=0.016 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCeEEEEeCChhh-----HHHHHHHHHHcCCceec-----CCcccCcccchhhhhccccC
Q psy13427 107 DQSAELLRDALNFVAHIAYRDGIVLFVGQSAQN-----SLLIEKTAQDCQEFAHT-----RFWRQGMFTNSEKLFRAVTR 176 (268)
Q Consensus 107 ~~T~~~L~~A~~~I~~i~~~~g~ILfV~t~~~~-----~~~V~~~A~~~g~~~i~-----~rW~gG~LTN~~~~~~~~~~ 176 (268)
.+=...|.+|+..+..- ..+-+++++|..+.. ...+++.++..|..-.. --+..|.+...... ....
T Consensus 196 ~Kg~~~li~a~~~l~~~-~~~~~l~ivG~g~~~~~~~l~~~~~~~~~~~~l~~~v~~l~~vv~~~g~~~~~~~~--~~~~ 272 (413)
T 3oy2_A 196 RKRLDIYVLAAARFISK-YPDAKVRFLCNSHHESKFDLHSIALRELVASGVDNVFTHLNKIMINRTVLTDERVD--MMYN 272 (413)
T ss_dssp GGTHHHHHHHHHHHHHH-CTTCCEEEEEECCTTCSCCHHHHHHHHHHHHTCSCHHHHHTTEEEECSCCCHHHHH--HHHH
T ss_pred hcCcHHHHHHHHHHHHh-CCCcEEEEEeCCcccchhhHHHHHHHHHHHcCcccccccccceeeccCcCCHHHHH--HHHH
Confidence 34455556666655442 234578888876532 36677777777743100 02335655532221 1233
Q ss_pred CCceeeeecCCCCCCCCCchHHHhhhhCCCccc
Q psy13427 177 LPDLVILTNTLTTVLEPNPAIGEAAKMCIPTVG 209 (268)
Q Consensus 177 ~Pdlvivld~~~~~~~d~~aI~EA~~l~IPtIa 209 (268)
.-|++++..- ...-..++.||..+|+|+|+
T Consensus 273 ~adv~v~pS~---~E~~~~~~lEAma~G~PvI~ 302 (413)
T 3oy2_A 273 ACDVIVNCSS---GEGFGLCSAEGAVLGKPLII 302 (413)
T ss_dssp HCSEEEECCS---CCSSCHHHHHHHTTTCCEEE
T ss_pred hCCEEEeCCC---cCCCCcHHHHHHHcCCCEEE
Confidence 4566665331 12224689999999999998
No 65
>3psh_A Protein HI_1472; substrate binding protein, periplasmic binding protein, MOLY binding protein, metal transport; 1.50A {Haemophilus influenzae} PDB: 3psa_A
Probab=35.09 E-value=17 Score=31.90 Aligned_cols=32 Identities=34% Similarity=0.542 Sum_probs=22.7
Q ss_pred cCCCceeeeecCCCCCCCCCchHHHhhhhCCCccccc
Q psy13427 175 TRLPDLVILTNTLTTVLEPNPAIGEAAKMCIPTVGIV 211 (268)
Q Consensus 175 ~~~Pdlvivld~~~~~~~d~~aI~EA~~l~IPtIalv 211 (268)
.-.||+||..+. .+...+..-.++||||+.+-
T Consensus 82 ~l~PDlIi~~~~-----~~~~~~~~L~~~Gipvv~~~ 113 (326)
T 3psh_A 82 ALKPDVVFVTNY-----APSEMIKQISDVNIPVVAIS 113 (326)
T ss_dssp HTCCSEEEEETT-----CCHHHHHHHHTTTCCEEEEC
T ss_pred ccCCCEEEEeCC-----CChHHHHHHHHcCCCEEEEe
Confidence 457999998652 23345666678899999873
No 66
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=34.73 E-value=60 Score=26.98 Aligned_cols=60 Identities=20% Similarity=0.190 Sum_probs=38.0
Q ss_pred cCCCceeeeecCCCCCCCCCchHHHhhhhCCCccccccCCCCCCceeeeccCCCCchhHHHHHHHHHHH
Q psy13427 175 TRLPDLVILTNTLTTVLEPNPAIGEAAKMCIPTVGIVDSNCNPNLITYPVPGNDDTPSAIQYYCQVFKT 243 (268)
Q Consensus 175 ~~~Pdlvivld~~~~~~~d~~aI~EA~~l~IPtIalvDTn~~p~~IdypIP~NddS~~SI~li~~lL~~ 243 (268)
.+.+|.||+... .. ...+.++...+||+|.+ |...+...+++... |...+.......|.+
T Consensus 61 ~~~vdgiIi~~~----~~-~~~~~~l~~~~iPvV~i-~~~~~~~~~~~V~~---D~~~~g~~a~~~L~~ 120 (276)
T 3jy6_A 61 SRGFDGLILQSF----SN-PQTVQEILHQQMPVVSV-DREMDACPWPQVVT---DNFEAAKAATTAFRQ 120 (276)
T ss_dssp TTTCSEEEEESS----CC-HHHHHHHHTTSSCEEEE-SCCCTTCSSCEEEC---CHHHHHHHHHHHHHT
T ss_pred hCCCCEEEEecC----Cc-HHHHHHHHHCCCCEEEE-ecccCCCCCCEEEE---ChHHHHHHHHHHHHH
Confidence 467999998763 22 56778888899999876 55544434555433 345555555555543
No 67
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=34.58 E-value=1.2e+02 Score=26.83 Aligned_cols=62 Identities=11% Similarity=0.120 Sum_probs=37.0
Q ss_pred CCceeeeecCCCCCCCCCchHHHhhhhCCCccccccC---CCCCCceeeeccCCCCchhHHH-HHHHHHH
Q psy13427 177 LPDLVILTNTLTTVLEPNPAIGEAAKMCIPTVGIVDS---NCNPNLITYPVPGNDDTPSAIQ-YYCQVFK 242 (268)
Q Consensus 177 ~Pdlvivld~~~~~~~d~~aI~EA~~l~IPtIalvDT---n~~p~~IdypIP~NddS~~SI~-li~~lL~ 242 (268)
.+|+||+... +..++-.+.+|...|||+++=.+- ......-.+.|=|-+ +..... ++.++|.
T Consensus 66 ~~d~vV~Spg---i~~~~p~~~~a~~~gi~v~~~~e~~~~~~~~~~~~IaVTGTn-GKTTTt~ll~~iL~ 131 (326)
T 3eag_A 66 KADVYVIGNV---AKRGMDVVEAILNLGLPYISGPQWLSENVLHHHWVLGVAGTH-GKTTTASMLAWVLE 131 (326)
T ss_dssp CCSEEEECTT---CCTTCHHHHHHHHTTCCEEEHHHHHHHHTGGGSEEEEEESSS-CHHHHHHHHHHHHH
T ss_pred CCCEEEECCC---cCCCCHHHHHHHHcCCcEEeHHHHHHHHHhcCCCEEEEECCC-CHHHHHHHHHHHHH
Confidence 4788877543 456788899999999999973331 000112345666765 555544 3444443
No 68
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=34.24 E-value=64 Score=26.96 Aligned_cols=61 Identities=10% Similarity=0.048 Sum_probs=38.8
Q ss_pred cCCCceeeeecCCCCCCCCCchHHHhhhhCCCccccccCCCCCCceeeeccCCCCchhHHHHHHHHHHH
Q psy13427 175 TRLPDLVILTNTLTTVLEPNPAIGEAAKMCIPTVGIVDSNCNPNLITYPVPGNDDTPSAIQYYCQVFKT 243 (268)
Q Consensus 175 ~~~Pdlvivld~~~~~~~d~~aI~EA~~l~IPtIalvDTn~~p~~IdypIP~NddS~~SI~li~~lL~~ 243 (268)
.+.+|.||+... ......+.++...+||+|.+ |+..+...+++.-. |...+.......|.+
T Consensus 62 ~~~vdgiIi~~~----~~~~~~~~~~~~~~iPvV~~-~~~~~~~~~~~V~~---D~~~~g~~a~~~L~~ 122 (291)
T 3egc_A 62 ERRVDGLILAPS----EGEHDYLRTELPKTFPIVAV-NRELRIPGCGAVLS---ENVRGARTAVEYLIA 122 (291)
T ss_dssp HTTCSEEEECCC----SSCCHHHHHSSCTTSCEEEE-SSCCCCTTCEEEEE---CHHHHHHHHHHHHHH
T ss_pred HCCCCEEEEeCC----CCChHHHHHhhccCCCEEEE-ecccCCCCCCEEEE---CcHHHHHHHHHHHHH
Confidence 357899988763 23567788888899999865 66555444555533 345555555555543
No 69
>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A
Probab=34.15 E-value=84 Score=29.74 Aligned_cols=62 Identities=15% Similarity=0.236 Sum_probs=36.7
Q ss_pred CCceeeeecCCCCCCCCCchHHHhhhhCCCccccccCCCC--CCceeeeccCCCCchhHH-HHHHHHHH
Q psy13427 177 LPDLVILTNTLTTVLEPNPAIGEAAKMCIPTVGIVDSNCN--PNLITYPVPGNDDTPSAI-QYYCQVFK 242 (268)
Q Consensus 177 ~Pdlvivld~~~~~~~d~~aI~EA~~l~IPtIalvDTn~~--p~~IdypIP~NddS~~SI-~li~~lL~ 242 (268)
.+|+||+... +..++-.+.+|...|||+++=.+--.. ...-.+.|=|-+ +..+. .++.++|.
T Consensus 81 ~~d~vV~Spg---i~~~~p~~~~a~~~gi~v~~~~e~l~~~~~~~~~IaVTGTn-GKTTTt~ml~~iL~ 145 (494)
T 4hv4_A 81 DASVVVVSTA---ISADNPEIVAAREARIPVIRRAEMLAELMRYRHGIAVAGTH-GKTTTTAMLSSIYA 145 (494)
T ss_dssp TCSEEEECTT---SCTTCHHHHHHHHTTCCEEEHHHHHHHHHTTSEEEEEECSS-SHHHHHHHHHHHHH
T ss_pred CCCEEEECCC---CCCCCHHHHHHHHCCCCEEcHHHHHHHHhcCCCEEEEecCC-ChHHHHHHHHHHHH
Confidence 4788776543 467788999999999999875442100 011246666765 44444 34444443
No 70
>3hz7_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Desulfitobacterium hafniense}
Probab=33.75 E-value=74 Score=23.18 Aligned_cols=49 Identities=14% Similarity=0.084 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhCCCeEEEEeCChhhHHHHHHHHHHcCCceecCCcccCc
Q psy13427 115 DALNFVAHIAYRDGIVLFVGQSAQNSLLIEKTAQDCQEFAHTRFWRQGM 163 (268)
Q Consensus 115 ~A~~~I~~i~~~~g~ILfV~t~~~~~~~V~~~A~~~g~~~i~~rW~gG~ 163 (268)
++.+.+..+...|+.+.++.+.+.+.+-|.++|+..|..+....-.+|.
T Consensus 17 ~~kkal~~l~~~G~~L~V~~dd~~a~~dI~~~~~~~G~~v~~~~~~~g~ 65 (87)
T 3hz7_A 17 RAKKALAELGEAGGVVTVLVDNDISRQNLQKMAEGMGYQSEYLEKDNGV 65 (87)
T ss_dssp HHHHHHHTTGGGCCEEEEEESSHHHHHHHHHHHHHHTCEEEEEECGGGC
T ss_pred HHHHHHHhccCCCCEEEEEECCccHHHHHHHHHHHCCCEEEEEEecCCE
Confidence 3444444542266778888889999999999999999876654334443
No 71
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=33.08 E-value=42 Score=28.91 Aligned_cols=65 Identities=15% Similarity=0.182 Sum_probs=37.2
Q ss_pred cCCCceeeeecCCCCCCCCCchHHHhhhhCCCccccccCCCCCCceeeec-cCCCCchhHHHHHHHHHHHH
Q psy13427 175 TRLPDLVILTNTLTTVLEPNPAIGEAAKMCIPTVGIVDSNCNPNLITYPV-PGNDDTPSAIQYYCQVFKTA 244 (268)
Q Consensus 175 ~~~Pdlvivld~~~~~~~d~~aI~EA~~l~IPtIalvDTn~~p~~IdypI-P~NddS~~SI~li~~lL~~a 244 (268)
.+.+|.||+... +...-..++++|...|||+|.+ |+..+....++-| -. |...+-.+....|.+.
T Consensus 58 ~~~vdgiii~~~--~~~~~~~~~~~a~~~gipvV~~-d~~~~~~~~~~~v~~~--D~~~~g~~~~~~L~~~ 123 (316)
T 1tjy_A 58 NQGYDAIIVSAV--SPDGLCPALKRAMQRGVKILTW-DSDTKPECRSYYINQG--TPKQLGSMLVEMAAHQ 123 (316)
T ss_dssp HTTCSEEEECCS--SSSTTHHHHHHHHHTTCEEEEE-SSCCCGGGCSEEEESC--CHHHHHHHHHHHHHHH
T ss_pred HcCCCEEEEeCC--CHHHHHHHHHHHHHCcCEEEEe-cCCCCCCCceEEEecC--CHHHHHHHHHHHHHHH
Confidence 356898887531 1111135678888899999987 6544332223333 23 4555555566666554
No 72
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=31.30 E-value=50 Score=28.06 Aligned_cols=62 Identities=16% Similarity=0.102 Sum_probs=37.8
Q ss_pred cCCCceeeeecCCCCCCCCCchHHHhhhhCCCccccccCCCCCCcee-eeccCCCCchhHHHHHHHHHH
Q psy13427 175 TRLPDLVILTNTLTTVLEPNPAIGEAAKMCIPTVGIVDSNCNPNLIT-YPVPGNDDTPSAIQYYCQVFK 242 (268)
Q Consensus 175 ~~~Pdlvivld~~~~~~~d~~aI~EA~~l~IPtIalvDTn~~p~~Id-ypIP~NddS~~SI~li~~lL~ 242 (268)
.+.+|.||+... +......+++++...|||+|.+ |+..+...++ +.-. |...+.......|.
T Consensus 56 ~~~vdgiIi~~~--~~~~~~~~~~~~~~~~iPvV~~-~~~~~~~~~~~~V~~---D~~~~g~~a~~~L~ 118 (313)
T 3m9w_A 56 NRGVDVLVIIPY--NGQVLSNVVKEAKQEGIKVLAY-DRMINDADIDFYISF---DNEKVGELQAKALV 118 (313)
T ss_dssp HTTCSEEEEECS--STTSCHHHHHHHHTTTCEEEEE-SSCCTTSCCSEEEEE---CHHHHHHHHHHHHH
T ss_pred HcCCCEEEEeCC--ChhhhHHHHHHHHHCCCeEEEE-CCcCCCCCceEEEec---CHHHHHHHHHHHHH
Confidence 457999998763 1112236788899999999876 6655444453 3322 34555555555554
No 73
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=31.03 E-value=1.4e+02 Score=21.13 Aligned_cols=82 Identities=15% Similarity=0.154 Sum_probs=46.8
Q ss_pred CCeEEEEeCChhhHHHHHHHHHHcCCceecCCcccCcccchhhhhcccc--------CCCceeeeecCCCCCCCC-CchH
Q psy13427 127 DGIVLFVGQSAQNSLLIEKTAQDCQEFAHTRFWRQGMFTNSEKLFRAVT--------RLPDLVILTNTLTTVLEP-NPAI 197 (268)
Q Consensus 127 ~g~ILfV~t~~~~~~~V~~~A~~~g~~~i~~rW~gG~LTN~~~~~~~~~--------~~Pdlvivld~~~~~~~d-~~aI 197 (268)
+.+||+|...+.....+....+..|..+.. ...++......... ..||+|++ |... +..+ ...+
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~~~~~~v-----~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~-d~~~-~~~~g~~~~ 74 (140)
T 1k68_A 2 HKKIFLVEDNKADIRLIQEALANSTVPHEV-----VTVRDGMEAMAYLRQEGEYANASRPDLILL-XLNL-PKKDGREVL 74 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHTCSSCCEE-----EEECSHHHHHHHHTTCGGGGSCCCCSEEEE-CSSC-SSSCHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCCceE-----EEECCHHHHHHHHHcccccccCCCCcEEEE-ecCC-CcccHHHHH
Confidence 568999999999888888888776642111 12344333221112 46888775 4210 1112 2334
Q ss_pred HHhhh----hCCCccccccCCC
Q psy13427 198 GEAAK----MCIPTVGIVDSNC 215 (268)
Q Consensus 198 ~EA~~----l~IPtIalvDTn~ 215 (268)
++... -++|+|.+.+...
T Consensus 75 ~~l~~~~~~~~~pii~ls~~~~ 96 (140)
T 1k68_A 75 AEIKSDPTLKRIPVVVLSTSIN 96 (140)
T ss_dssp HHHHHSTTGGGSCEEEEESCCC
T ss_pred HHHHcCcccccccEEEEecCCc
Confidence 44443 4689998877653
No 74
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=30.38 E-value=89 Score=30.01 Aligned_cols=79 Identities=15% Similarity=0.251 Sum_probs=47.6
Q ss_pred CCeEEEEeCChhhHHHHHHHHHHcCCceecCCcccCcccchhhhhccccCCCceeeeecCCCCCCCC--CchHHHhhhhC
Q psy13427 127 DGIVLFVGQSAQNSLLIEKTAQDCQEFAHTRFWRQGMFTNSEKLFRAVTRLPDLVILTNTLTTVLEP--NPAIGEAAKMC 204 (268)
Q Consensus 127 ~g~ILfV~t~~~~~~~V~~~A~~~g~~~i~~rW~gG~LTN~~~~~~~~~~~Pdlvivld~~~~~~~d--~~aI~EA~~l~ 204 (268)
..+|+++....+....+.+..+..|.+...-.|. +..... .. ..||.||+..--.++..+ ..+.+++...+
T Consensus 7 ~~~IlIlD~g~~~~~~i~r~lr~~G~~~~i~p~~----~~~~~i-~~--~~~dgiILsGGp~s~~~~~~~~~~~~~~~~g 79 (525)
T 1gpm_A 7 KHRILILDFGSQYTQLVARRVRELGVYCELWAWD----VTEAQI-RD--FNPSGIILSGGPESTTEENSPRAPQYVFEAG 79 (525)
T ss_dssp SSEEEEEECSCTTHHHHHHHHHHTTCEEEEEESC----CCHHHH-HH--HCCSEEEECCCSSCTTSTTCCCCCGGGGTSS
T ss_pred CCEEEEEECCCccHHHHHHHHHHCCCEEEEEECC----CCHHHH-hc--cCCCEEEECCcCccccccCCcchHHHHHHCC
Confidence 3579999888777777777778888764432221 122221 11 158988887622222111 23456677789
Q ss_pred CCcccccc
Q psy13427 205 IPTVGIVD 212 (268)
Q Consensus 205 IPtIalvD 212 (268)
+|+.|||=
T Consensus 80 ~PvLGIC~ 87 (525)
T 1gpm_A 80 VPVFGVCY 87 (525)
T ss_dssp SCEEEETH
T ss_pred CCEEEECh
Confidence 99999983
No 75
>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans}
Probab=30.23 E-value=23 Score=30.12 Aligned_cols=75 Identities=17% Similarity=0.050 Sum_probs=43.3
Q ss_pred EEEEeCC-hhhHHHHHHHHHHcCCcee-cCCcccCcccchhhhhccccCCCceeeeecCCCCCC---C---------CCc
Q psy13427 130 VLFVGQS-AQNSLLIEKTAQDCQEFAH-TRFWRQGMFTNSEKLFRAVTRLPDLVILTNTLTTVL---E---------PNP 195 (268)
Q Consensus 130 ILfV~t~-~~~~~~V~~~A~~~g~~~i-~~rW~gG~LTN~~~~~~~~~~~Pdlvivld~~~~~~---~---------d~~ 195 (268)
|+++-.. ......+...+...|.... ..-+.+..+.. ....+|.||+..--.++. . ...
T Consensus 3 i~vi~h~~~e~~g~~~~~l~~~g~~~~~~~~~~~~~~p~-------~~~~~d~lii~GGp~~~~~~~~~~~~~~~~~~~~ 75 (236)
T 3l7n_A 3 IHFILHETFEAPGAYLAWAALRGHDVSMTKVYRYEKLPK-------DIDDFDMLILMGGPQSPSSTKKEFPYYDAQAEVK 75 (236)
T ss_dssp EEEEECCTTSCCHHHHHHHHHTTCEEEEEEGGGTCCCCS-------CGGGCSEEEECCCSSCTTCCTTTCTTCCHHHHHH
T ss_pred EEEEeCCCCCCchHHHHHHHHCCCeEEEEeeeCCCCCCC-------CccccCEEEECCCCCCcccccccCcccchHHHHH
Confidence 5554433 3444566777777776532 22233333321 123589999987322221 1 235
Q ss_pred hHHHhhhhCCCccccc
Q psy13427 196 AIGEAAKMCIPTVGIV 211 (268)
Q Consensus 196 aI~EA~~l~IPtIalv 211 (268)
.|++|...++|++|||
T Consensus 76 ~i~~~~~~~~PvLGIC 91 (236)
T 3l7n_A 76 LIQKAAKSEKIIVGVC 91 (236)
T ss_dssp HHHHHHHTTCEEEEET
T ss_pred HHHHHHHcCCCEEEEc
Confidence 6778888899999998
No 76
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=29.84 E-value=43 Score=32.34 Aligned_cols=79 Identities=18% Similarity=0.176 Sum_probs=46.9
Q ss_pred CCCeEEEEeCChhhHHHHHHHHHHcCCceecCCcccCcccchhhhhccccCCCceeeeecCCCCCCC--CCchHHHhhhh
Q psy13427 126 RDGIVLFVGQSAQNSLLIEKTAQDCQEFAHTRFWRQGMFTNSEKLFRAVTRLPDLVILTNTLTTVLE--PNPAIGEAAKM 203 (268)
Q Consensus 126 ~~g~ILfV~t~~~~~~~V~~~A~~~g~~~i~~rW~gG~LTN~~~~~~~~~~~Pdlvivld~~~~~~~--d~~aI~EA~~l 203 (268)
...+|+++....+....|.+..+..|.+...-.|. +..... ....||.||+..--.++.. ...+.+++...
T Consensus 9 ~~~~I~IlD~g~~~~~~i~r~lr~~Gv~~~i~p~~----~~~~~i---~~~~~dgIILsGGp~sv~~~~~~~~~~~~~~~ 81 (527)
T 3tqi_A 9 HQHRILILDFGSQYAQLIARRVREIGVYCELMPCD----IDEETI---RDFNPHGIILSGGPETVTLSHTLRAPAFIFEI 81 (527)
T ss_dssp CCSEEEEEECSCTTHHHHHHHHHHHTCEEEEEETT----CCSSSS---TTTCCSEEEECCCCC---------CCCSTTTS
T ss_pred cCCeEEEEECCCccHHHHHHHHHHCCCeEEEEECC----CCHHHH---HhcCCCEEEECCcCcccccCCChhhHHHHHhc
Confidence 34689999998888888888888889775432221 111111 0125898888762122211 12344566678
Q ss_pred CCCccccc
Q psy13427 204 CIPTVGIV 211 (268)
Q Consensus 204 ~IPtIalv 211 (268)
|+|+.|+|
T Consensus 82 ~~PvLGIC 89 (527)
T 3tqi_A 82 GCPVLGIC 89 (527)
T ss_dssp SSCEEEET
T ss_pred CCCEEEEC
Confidence 99999988
No 77
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=29.77 E-value=1e+02 Score=25.47 Aligned_cols=61 Identities=21% Similarity=0.135 Sum_probs=38.0
Q ss_pred cCCCceeeeecCCCCCCCCCchHHHhhhhCCCccccccCCCCCC-ceeeeccCCCCchhHHHHHHHHHHH
Q psy13427 175 TRLPDLVILTNTLTTVLEPNPAIGEAAKMCIPTVGIVDSNCNPN-LITYPVPGNDDTPSAIQYYCQVFKT 243 (268)
Q Consensus 175 ~~~Pdlvivld~~~~~~~d~~aI~EA~~l~IPtIalvDTn~~p~-~IdypIP~NddS~~SI~li~~lL~~ 243 (268)
.+.+|.||+..+ ..+...+.++...+||+|.+ |+..+.. .+++.-. |...+.......|.+
T Consensus 67 ~~~vdgiIi~~~----~~~~~~~~~l~~~~iPvV~~-~~~~~~~~~~~~V~~---D~~~~g~~a~~~L~~ 128 (292)
T 3k4h_A 67 GRQIGGIILLYS----RENDRIIQYLHEQNFPFVLI-GKPYDRKDEITYVDN---DNYTAAREVAEYLIS 128 (292)
T ss_dssp TTCCCEEEESCC----BTTCHHHHHHHHTTCCEEEE-SCCSSCTTTSCEEEC---CHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEeCC----CCChHHHHHHHHCCCCEEEE-CCCCCCCCCCCEEEE---CcHHHHHHHHHHHHH
Confidence 467999998763 23346788888999999876 6554433 2555432 345555555555543
No 78
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=29.69 E-value=1.4e+02 Score=21.53 Aligned_cols=77 Identities=17% Similarity=-0.011 Sum_probs=44.5
Q ss_pred hCCCeEEEEeCChhhHHHHHHHHHHcCCceecCCcccCcccchhhhhcc-ccCCCceeeeecCCCCCCCC-CchHHHhhh
Q psy13427 125 YRDGIVLFVGQSAQNSLLIEKTAQDCQEFAHTRFWRQGMFTNSEKLFRA-VTRLPDLVILTNTLTTVLEP-NPAIGEAAK 202 (268)
Q Consensus 125 ~~~g~ILfV~t~~~~~~~V~~~A~~~g~~~i~~rW~gG~LTN~~~~~~~-~~~~Pdlvivld~~~~~~~d-~~aI~EA~~ 202 (268)
..+.+||+|...+.....+....+..|.... ..++....... ....||+|| +. ..+ ...+++...
T Consensus 16 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~-------~~~~~~~al~~l~~~~~dlvi-~~-----~~~g~~~~~~l~~ 82 (137)
T 2pln_A 16 RGSMRVLLIEKNSVLGGEIEKGLNVKGFMAD-------VTESLEDGEYLMDIRNYDLVM-VS-----DKNALSFVSRIKE 82 (137)
T ss_dssp TTCSEEEEECSCHHHHHHHHHHHHHTTCEEE-------EESCHHHHHHHHHHSCCSEEE-EC-----STTHHHHHHHHHH
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHcCcEEE-------EeCCHHHHHHHHHcCCCCEEE-Ec-----CccHHHHHHHHHh
Confidence 3457899999998888888877777653221 12333321111 124689988 43 122 233444433
Q ss_pred h--CCCccccccCC
Q psy13427 203 M--CIPTVGIVDSN 214 (268)
Q Consensus 203 l--~IPtIalvDTn 214 (268)
. ++|+|.+.+..
T Consensus 83 ~~~~~~ii~ls~~~ 96 (137)
T 2pln_A 83 KHSSIVVLVSSDNP 96 (137)
T ss_dssp HSTTSEEEEEESSC
T ss_pred cCCCccEEEEeCCC
Confidence 3 78898887654
No 79
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=29.30 E-value=92 Score=25.81 Aligned_cols=59 Identities=17% Similarity=0.099 Sum_probs=35.8
Q ss_pred CCceeeeecCCCCCCCCCchHHHhhhhCCCccccccCCCCCCceeeeccCCCCchhHHHHHHHHHHH
Q psy13427 177 LPDLVILTNTLTTVLEPNPAIGEAAKMCIPTVGIVDSNCNPNLITYPVPGNDDTPSAIQYYCQVFKT 243 (268)
Q Consensus 177 ~Pdlvivld~~~~~~~d~~aI~EA~~l~IPtIalvDTn~~p~~IdypIP~NddS~~SI~li~~lL~~ 243 (268)
.+|.||+... ..+...+.++...+||+|.+ |...+...+++.-. |...+.......|.+
T Consensus 57 ~vdgiI~~~~----~~~~~~~~~l~~~~iPvV~~-~~~~~~~~~~~V~~---D~~~~~~~a~~~L~~ 115 (277)
T 3cs3_A 57 MVDGAIILDW----TFPTKEIEKFAERGHSIVVL-DRTTEHRNIRQVLL---DNRGGATQAIEQFVN 115 (277)
T ss_dssp TCSEEEEECT----TSCHHHHHHHHHTTCEEEES-SSCCCSTTEEEEEE---CHHHHHHHHHHHHHH
T ss_pred cccEEEEecC----CCCHHHHHHHHhcCCCEEEE-ecCCCCCCCCEEEe---CcHHHHHHHHHHHHH
Confidence 6888888752 22345678888889999877 55443333554432 345555555555544
No 80
>1tzb_A Glucose-6-phosphate isomerase, conjectural; enzyme, crenarchaeon, hyperthermophIle, PGI family; 1.16A {Pyrobaculum aerophilum} SCOP: c.80.1.1 PDB: 1tzc_A* 1x9h_A* 1x9i_A*
Probab=29.15 E-value=29 Score=30.67 Aligned_cols=48 Identities=19% Similarity=0.195 Sum_probs=31.6
Q ss_pred CCCceeeeecCCCCCCCCCchHHHhhhhCCCccccccCCCCCCceeeec
Q psy13427 176 RLPDLVILTNTLTTVLEPNPAIGEAAKMCIPTVGIVDSNCNPNLITYPV 224 (268)
Q Consensus 176 ~~Pdlvivld~~~~~~~d~~aI~EA~~l~IPtIalvDTn~~p~~IdypI 224 (268)
...|++|++.--....+--.+++.|++.|.|+|+|++.. .....++++
T Consensus 78 ~~~dlvI~iS~SG~T~e~~~a~~~ak~~g~~~iaIT~~~-~La~~~~~l 125 (302)
T 1tzb_A 78 ARDGLLIAVSYSGNTIETLYTVEYAKRRRIPAVAITTGG-RLAQMGVPT 125 (302)
T ss_dssp CSSSEEEEECSSSCCHHHHHHHHHHHHTTCCEEEEESST-TGGGSSSCE
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEECCCc-hHHHCCeeE
Confidence 467888887731111122468899999999999999887 432225554
No 81
>2zxr_A Single-stranded DNA specific exonuclease RECJ; DNA repair, hydrolase; 2.15A {Thermus thermophilus} PDB: 2zxo_A 2zxp_A 1ir6_A
Probab=29.02 E-value=1.1e+02 Score=30.77 Aligned_cols=99 Identities=10% Similarity=0.097 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEeCChh----hHHHHHHHHHHcCC---ceecCCcccCcccchhhhhccccCCCceeeee
Q psy13427 112 LLRDALNFVAHIAYRDGIVLFVGQSAQ----NSLLIEKTAQDCQE---FAHTRFWRQGMFTNSEKLFRAVTRLPDLVILT 184 (268)
Q Consensus 112 ~L~~A~~~I~~i~~~~g~ILfV~t~~~----~~~~V~~~A~~~g~---~~i~~rW~gG~LTN~~~~~~~~~~~Pdlvivl 184 (268)
-+.+|+.-|.....++.+|++++-... ..-++.++.+..|. +|+.++...|.--|...+ ......++++|++
T Consensus 57 dm~~Av~~i~~aI~~~ekI~I~GH~D~DGi~Saa~L~~~L~~lG~~v~~~ip~r~~egygl~~~~I-~~~~~~~~LIItV 135 (666)
T 2zxr_A 57 GLREAAALLEEALRQGKRIRVHGDYDADGLTGTAILVRGLAALGADVHPFIPHRLEEGYGVLMERV-PEHLEASDLFLTV 135 (666)
T ss_dssp THHHHHHHHHHHHHTTCEEEEECCSSHHHHHHHHHHHHHHHHTTCEEEECCC---------------------CCEEEES
T ss_pred hHHHHHHHHHHHHHcCCeEEEEeccCCchHHHHHHHHHHHHHcCCcEEEecCCCCCccccCCHHHH-HhhccCCCEEEEE
Confidence 345556666666678899999998741 22344566777774 233344333321121111 1122357899999
Q ss_pred cCCCCCCCCCchHHHhhhhCCCccccccCCC
Q psy13427 185 NTLTTVLEPNPAIGEAAKMCIPTVGIVDSNC 215 (268)
Q Consensus 185 d~~~~~~~d~~aI~EA~~l~IPtIalvDTn~ 215 (268)
|.. ...+..+.+|...|+.+| ++|=..
T Consensus 136 D~G---~~s~~~i~~a~~~g~~VI-ViDHH~ 162 (666)
T 2zxr_A 136 DCG---ITNHAELRELLENGVEVI-VTDHHT 162 (666)
T ss_dssp CCC-----------------CEEE-EECCCC
T ss_pred cCC---chhhhhHHHHHhCCCCEE-EECCcC
Confidence 952 233445667777788654 557443
No 82
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=28.73 E-value=1.2e+02 Score=27.41 Aligned_cols=92 Identities=10% Similarity=0.011 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCeEEEEeCCh-hhHHHHHHHHHHcCCceecCCcccCcccchhhhhccccCCCceeeeec
Q psy13427 107 DQSAELLRDALNFVAHIAYRDGIVLFVGQSA-QNSLLIEKTAQDCQEFAHTRFWRQGMFTNSEKLFRAVTRLPDLVILTN 185 (268)
Q Consensus 107 ~~T~~~L~~A~~~I~~i~~~~g~ILfV~t~~-~~~~~V~~~A~~~g~~~i~~rW~gG~LTN~~~~~~~~~~~Pdlvivld 185 (268)
.+=...|.+|+..+.. .+-+++++|..+ .....+++.++..+... .+..|. ++-.. ......-|++++..
T Consensus 304 ~Kg~~~li~a~~~l~~---~~~~l~ivG~g~~~~~~~l~~~~~~~~~~v---~~~~g~-~~~~~--~~~~~~adv~v~pS 374 (485)
T 2qzs_A 304 QKGLDLVLEALPGLLE---QGGQLALLGAGDPVLQEGFLAAAAEYPGQV---GVQIGY-HEAFS--HRIMGGADVILVPS 374 (485)
T ss_dssp GGCHHHHHHHHHHHHH---TTCEEEEEEEECHHHHHHHHHHHHHSTTTE---EEEESC-CHHHH--HHHHHHCSEEEECC
T ss_pred ccCHHHHHHHHHHHhh---CCcEEEEEeCCchHHHHHHHHHHHhCCCcE---EEeCCC-CHHHH--HHHHHhCCEEEECC
Confidence 3444455555555443 467888999865 34566677777765221 123444 32221 01223456665543
Q ss_pred CCCCCCCCCchHHHhhhhCCCcccc
Q psy13427 186 TLTTVLEPNPAIGEAAKMCIPTVGI 210 (268)
Q Consensus 186 ~~~~~~~d~~aI~EA~~l~IPtIal 210 (268)
- ...-..++.||..+|.|+|+-
T Consensus 375 ~---~E~~g~~~lEAma~G~PvI~s 396 (485)
T 2qzs_A 375 R---FEPCGLTQLYGLKYGTLPLVR 396 (485)
T ss_dssp S---CCSSCSHHHHHHHHTCEEEEE
T ss_pred c---cCCCcHHHHHHHHCCCCEEEC
Confidence 1 122357899999999999985
No 83
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=28.51 E-value=1e+02 Score=25.42 Aligned_cols=61 Identities=8% Similarity=-0.028 Sum_probs=35.6
Q ss_pred cCCCceeeeecCCCCCCCCCchHHHhhh-hCCCccccccCCCCCCceeeeccCCCCchhHHHHHHHHHHH
Q psy13427 175 TRLPDLVILTNTLTTVLEPNPAIGEAAK-MCIPTVGIVDSNCNPNLITYPVPGNDDTPSAIQYYCQVFKT 243 (268)
Q Consensus 175 ~~~Pdlvivld~~~~~~~d~~aI~EA~~-l~IPtIalvDTn~~p~~IdypIP~NddS~~SI~li~~lL~~ 243 (268)
.+.+|.||+... ..+...+.++.. .+||+|.+ |+..+...+++.-+ |...+.......|.+
T Consensus 75 ~~~vdgii~~~~----~~~~~~~~~l~~~~~iPvV~~-~~~~~~~~~~~V~~---d~~~~~~~a~~~l~~ 136 (296)
T 3brq_A 75 DLRCDAIMIYPR----FLSVDEIDDIIDAHSQPIMVL-NRRLRKNSSHSVWC---DHKQTSFNAVAELIN 136 (296)
T ss_dssp HTTCSEEEEECS----SSCHHHHHHHHHTCSSCEEEE-SCCCSSSGGGEECC---CHHHHHHHHHHHHHH
T ss_pred hcCCCEEEEecC----CCChHHHHHHHhcCCCCEEEE-ccccCCCCCCEEEE---chHHHHHHHHHHHHH
Confidence 356898888752 223356777877 89999876 65444334444422 345555555454443
No 84
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=28.29 E-value=61 Score=26.59 Aligned_cols=61 Identities=16% Similarity=0.237 Sum_probs=37.7
Q ss_pred cCCCceeeeecCCCCCCCCCchHHHhhhhCCCccccccCCCCCCceeeeccCCCCchhHHHHHHHHHH
Q psy13427 175 TRLPDLVILTNTLTTVLEPNPAIGEAAKMCIPTVGIVDSNCNPNLITYPVPGNDDTPSAIQYYCQVFK 242 (268)
Q Consensus 175 ~~~Pdlvivld~~~~~~~d~~aI~EA~~l~IPtIalvDTn~~p~~IdypIP~NddS~~SI~li~~lL~ 242 (268)
.+.+|.+|+.... ..+...+.++...|||+|.+ |...+...+++.-. |...+.......|.
T Consensus 56 ~~~vdgiIi~~~~---~~~~~~~~~~~~~~iPvV~~-~~~~~~~~~~~V~~---d~~~~~~~a~~~L~ 116 (272)
T 3o74_A 56 ARRCDALFVASCL---PPEDDSYRELQDKGLPVIAI-DRRLDPAHFCSVIS---DDRDASRQLAASLL 116 (272)
T ss_dssp HTTCSEEEECCCC---CSSCCHHHHHHHTTCCEEEE-SSCCCTTTCEEEEE---CHHHHHHHHHHHHH
T ss_pred HcCCCEEEEecCc---cccHHHHHHHHHcCCCEEEE-ccCCCccccCEEEE---chHHHHHHHHHHHH
Confidence 3578998886531 12456788899999999865 66554444565433 34455555544443
No 85
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=28.22 E-value=1.3e+02 Score=20.33 Aligned_cols=80 Identities=6% Similarity=0.001 Sum_probs=43.0
Q ss_pred CCeEEEEeCChhhHHHHHHHHHHcCCceecCCcccCcccchhhhhcc-ccCCCceeeeecCCCCCCCC-CchHHHhhh--
Q psy13427 127 DGIVLFVGQSAQNSLLIEKTAQDCQEFAHTRFWRQGMFTNSEKLFRA-VTRLPDLVILTNTLTTVLEP-NPAIGEAAK-- 202 (268)
Q Consensus 127 ~g~ILfV~t~~~~~~~V~~~A~~~g~~~i~~rW~gG~LTN~~~~~~~-~~~~Pdlvivld~~~~~~~d-~~aI~EA~~-- 202 (268)
+.+||++...+.....+....+..|..... .++....... ....||++++ |... +..+ ...++....
T Consensus 1 ~~~iliv~~~~~~~~~l~~~l~~~g~~v~~-------~~~~~~~~~~l~~~~~dlii~-d~~~-~~~~~~~~~~~l~~~~ 71 (119)
T 2j48_A 1 AGHILLLEEEDEAATVVCEMLTAAGFKVIW-------LVDGSTALDQLDLLQPIVILM-AWPP-PDQSCLLLLQHLREHQ 71 (119)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHHTTCEEEE-------ESCHHHHHHHHHHHCCSEEEE-ECST-TCCTHHHHHHHHHHTC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCcEEEE-------ecCHHHHHHHHHhcCCCEEEE-ecCC-CCCCHHHHHHHHHhcc
Confidence 357999999998888888877776643211 2232221110 1235888775 4211 1122 122333332
Q ss_pred --hCCCccccccCCC
Q psy13427 203 --MCIPTVGIVDSNC 215 (268)
Q Consensus 203 --l~IPtIalvDTn~ 215 (268)
-++|+|.+.+...
T Consensus 72 ~~~~~~ii~~~~~~~ 86 (119)
T 2j48_A 72 ADPHPPLVLFLGEPP 86 (119)
T ss_dssp CCSSCCCEEEESSCC
T ss_pred ccCCCCEEEEeCCCC
Confidence 4789988876543
No 86
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=28.04 E-value=1.1e+02 Score=25.64 Aligned_cols=60 Identities=13% Similarity=0.043 Sum_probs=35.3
Q ss_pred CCCceeeeecCCCCCCCCCchHHHhhhhCCCccccccCCCCCCceeeeccCCCCchhHHHHHHHHHHH
Q psy13427 176 RLPDLVILTNTLTTVLEPNPAIGEAAKMCIPTVGIVDSNCNPNLITYPVPGNDDTPSAIQYYCQVFKT 243 (268)
Q Consensus 176 ~~Pdlvivld~~~~~~~d~~aI~EA~~l~IPtIalvDTn~~p~~IdypIP~NddS~~SI~li~~lL~~ 243 (268)
+.+|.||+... ..+...+.++...+||+|.+ |...+...+++.-+ |...+.......|.+
T Consensus 71 ~~vdgiIi~~~----~~~~~~~~~l~~~~iPvV~~-~~~~~~~~~~~V~~---D~~~~g~~a~~~L~~ 130 (289)
T 2fep_A 71 KQVDGIVFMGG----NITDEHVAEFKRSPVPIVLA-ASVEEQEETPSVAI---DYEQAIYDAVKLLVD 130 (289)
T ss_dssp TTCSEEEECCS----CCCHHHHHHHHHSSSCEEEE-SCCCTTCCSCEEEC---CHHHHHHHHHHHHHH
T ss_pred CCCCEEEEecC----CCCHHHHHHHHhcCCCEEEE-ccccCCCCCCEEEE---CcHHHHHHHHHHHHH
Confidence 56888887652 22345677888889999877 55433223444322 345555555555543
No 87
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=27.88 E-value=1.1e+02 Score=27.68 Aligned_cols=91 Identities=11% Similarity=0.017 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEEeCChh-hHHHHHHHHHHcCCceecCCcccCcccchhhhhccccCCCceeeeecC
Q psy13427 108 QSAELLRDALNFVAHIAYRDGIVLFVGQSAQ-NSLLIEKTAQDCQEFAHTRFWRQGMFTNSEKLFRAVTRLPDLVILTNT 186 (268)
Q Consensus 108 ~T~~~L~~A~~~I~~i~~~~g~ILfV~t~~~-~~~~V~~~A~~~g~~~i~~rW~gG~LTN~~~~~~~~~~~Pdlvivld~ 186 (268)
+=...|.+|+..+.. .+-+++++|..+. ..+.+++.++..+... .+..|. .+-.. ......-|++++..-
T Consensus 304 Kg~~~li~a~~~l~~---~~~~l~ivG~g~~~~~~~l~~~~~~~~~~v---~~~~g~-~~~~~--~~~~~~adv~v~pS~ 374 (485)
T 1rzu_A 304 KGIDLMAEAVDEIVS---LGGRLVVLGAGDVALEGALLAAASRHHGRV---GVAIGY-NEPLS--HLMQAGCDAIIIPSR 374 (485)
T ss_dssp TTHHHHHTTHHHHHH---TTCEEEEEECBCHHHHHHHHHHHHHTTTTE---EEEESC-CHHHH--HHHHHHCSEEEECCS
T ss_pred cCHHHHHHHHHHHHh---cCceEEEEeCCchHHHHHHHHHHHhCCCcE---EEecCC-CHHHH--HHHHhcCCEEEECcc
Confidence 334445555554433 4678899998753 4566777777765221 123444 32221 012334566655331
Q ss_pred CCCCCCCCchHHHhhhhCCCcccc
Q psy13427 187 LTTVLEPNPAIGEAAKMCIPTVGI 210 (268)
Q Consensus 187 ~~~~~~d~~aI~EA~~l~IPtIal 210 (268)
...-..++.||..+|.|+|+-
T Consensus 375 ---~E~~~~~~lEAma~G~PvI~s 395 (485)
T 1rzu_A 375 ---FEPCGLTQLYALRYGCIPVVA 395 (485)
T ss_dssp ---CCSSCSHHHHHHHHTCEEEEE
T ss_pred ---cCCCCHHHHHHHHCCCCEEEe
Confidence 122246899999999999984
No 88
>3ga2_A Endonuclease V; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Bacillus subtilis}
Probab=27.72 E-value=88 Score=27.70 Aligned_cols=56 Identities=18% Similarity=0.199 Sum_probs=33.8
Q ss_pred CcccCcccchhh-----hhccccCCCceeeeecCC-CCCCCCCchHHHhhhhCCCccccccC
Q psy13427 158 FWRQGMFTNSEK-----LFRAVTRLPDLVILTNTL-TTVLEPNPAIGEAAKMCIPTVGIVDS 213 (268)
Q Consensus 158 rW~gG~LTN~~~-----~~~~~~~~Pdlvivld~~-~~~~~d~~aI~EA~~l~IPtIalvDT 213 (268)
-++||.|.=... .++.+...||+++|=.-. --+..--.|-.=.-.+++||||+.=+
T Consensus 85 PYIPG~LaFRE~P~ll~al~~L~~~PdlllvDG~GiaHPRr~GlAsHlGv~l~~PtIGVAKs 146 (246)
T 3ga2_A 85 PYVSGFLAFRELPLIIEAAKKLETEPDVFLFDGNGYLHYNHMGVATHAAFFLGKPTIGIAKT 146 (246)
T ss_dssp CSSSSCGGGGTHHHHHHHHHHCSSCCSCEEEEBCSSSSTTSCCHHHHHHHHHTSCEEEEESS
T ss_pred CCCCCchhhhhHHHHHHHHHhcCCCCCEEEEcCcEEecCCCcchhheeeeecCCCEEeeecc
Confidence 478888764321 123456789998863210 01233446666667789999998544
No 89
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=27.52 E-value=1.2e+02 Score=25.43 Aligned_cols=61 Identities=11% Similarity=-0.033 Sum_probs=36.3
Q ss_pred cCCCceeeeecCCCCCCCCCchHHHhhhhCCCccccccCCCCCCceeeeccCCCCchhHHHHHHHHHHH
Q psy13427 175 TRLPDLVILTNTLTTVLEPNPAIGEAAKMCIPTVGIVDSNCNPNLITYPVPGNDDTPSAIQYYCQVFKT 243 (268)
Q Consensus 175 ~~~Pdlvivld~~~~~~~d~~aI~EA~~l~IPtIalvDTn~~p~~IdypIP~NddS~~SI~li~~lL~~ 243 (268)
.+.+|.||+... ..+...+.++...+||+|.+ |+..+...+++.- .|...+.......|.+
T Consensus 65 ~~~vdgiIi~~~----~~~~~~~~~l~~~~iPvV~~-~~~~~~~~~~~V~---~D~~~~g~~a~~~L~~ 125 (290)
T 2rgy_A 65 GRDCDGVVVISH----DLHDEDLDELHRMHPKMVFL-NRAFDALPDASFC---PDHRRGGELAAATLIE 125 (290)
T ss_dssp HTTCSEEEECCS----SSCHHHHHHHHHHCSSEEEE-SSCCTTSGGGEEC---CCHHHHHHHHHHHHHH
T ss_pred hcCccEEEEecC----CCCHHHHHHHhhcCCCEEEE-ccccCCCCCCEEE---eCcHHHHHHHHHHHHH
Confidence 357898888652 22345677787889999876 5544333345442 2355555555555543
No 90
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=27.38 E-value=51 Score=27.95 Aligned_cols=61 Identities=18% Similarity=0.094 Sum_probs=38.4
Q ss_pred cCCCceeeeecCCCCCCCCCchHHHhhhhCCCccccccCCCCCCceeeeccCCCCchhHHHHHHHHHHH
Q psy13427 175 TRLPDLVILTNTLTTVLEPNPAIGEAAKMCIPTVGIVDSNCNPNLITYPVPGNDDTPSAIQYYCQVFKT 243 (268)
Q Consensus 175 ~~~Pdlvivld~~~~~~~d~~aI~EA~~l~IPtIalvDTn~~p~~IdypIP~NddS~~SI~li~~lL~~ 243 (268)
.+.+|.||+..+ ..+...+.++...+||+|.+ |+..+...+++.-. |...+.......|.+
T Consensus 81 ~~~vdgiIi~~~----~~~~~~~~~l~~~~iPvV~i-~~~~~~~~~~~V~~---D~~~~g~~a~~~L~~ 141 (305)
T 3huu_A 81 SKSVDGFILLYS----LKDDPIEHLLNEFKVPYLIV-GKSLNYENIIHIDN---DNIDAAYQLTQYLYH 141 (305)
T ss_dssp TTCCSEEEESSC----BTTCHHHHHHHHTTCCEEEE-SCCCSSTTCCEEEC---CHHHHHHHHHHHHHH
T ss_pred hCCCCEEEEeCC----cCCcHHHHHHHHcCCCEEEE-CCCCcccCCcEEEe---CHHHHHHHHHHHHHH
Confidence 467899988753 23346788888899999876 65554444666533 345555555555543
No 91
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7
Probab=27.09 E-value=1.2e+02 Score=26.27 Aligned_cols=32 Identities=13% Similarity=0.168 Sum_probs=24.1
Q ss_pred ccCCCceeeeecCCCCCCCCCchHHHhhhhCCCccccccC
Q psy13427 174 VTRLPDLVILTNTLTTVLEPNPAIGEAAKMCIPTVGIVDS 213 (268)
Q Consensus 174 ~~~~Pdlvivld~~~~~~~d~~aI~EA~~l~IPtIalvDT 213 (268)
....-|++|-.| ..++..|.-+|+|+|+|.-.
T Consensus 258 li~~a~l~I~~D--------sg~~HlAaa~g~P~v~lfg~ 289 (348)
T 1psw_A 258 LIAACKAIVTND--------SGLMHVAAALNRPLVALYGP 289 (348)
T ss_dssp HHHTSSEEEEES--------SHHHHHHHHTTCCEEEEESS
T ss_pred HHHhCCEEEecC--------CHHHHHHHHcCCCEEEEECC
Confidence 345567777654 46888899999999999754
No 92
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=26.37 E-value=56 Score=26.94 Aligned_cols=60 Identities=10% Similarity=-0.063 Sum_probs=35.6
Q ss_pred cCCCceeeeecCCCCCCCCCchHHHhhhhCCCccccccCCCCCCceeeeccCCCCchhHHHHHHHHHH
Q psy13427 175 TRLPDLVILTNTLTTVLEPNPAIGEAAKMCIPTVGIVDSNCNPNLITYPVPGNDDTPSAIQYYCQVFK 242 (268)
Q Consensus 175 ~~~Pdlvivld~~~~~~~d~~aI~EA~~l~IPtIalvDTn~~p~~IdypIP~NddS~~SI~li~~lL~ 242 (268)
.+.+|.+|+... ..+...+.++...+||+|.+ |+..+...+++.-+ |...+.......|.
T Consensus 57 ~~~vdgii~~~~----~~~~~~~~~l~~~~iPvV~~-~~~~~~~~~~~V~~---d~~~~~~~a~~~L~ 116 (275)
T 3d8u_A 57 ESRPAGVVLFGS----EHSQRTHQLLEASNTPVLEI-AELSSKASYLNIGV---DHFEVGKACTRHLI 116 (275)
T ss_dssp TSCCCCEEEESS----CCCHHHHHHHHHHTCCEEEE-SSSCSSSSSEEECB---CHHHHHHHHHHHHH
T ss_pred hcCCCEEEEeCC----CCCHHHHHHHHhCCCCEEEE-eeccCCCCCCEEEE---ChHHHHHHHHHHHH
Confidence 456898888753 22345678888889999887 55443334554422 34455555545444
No 93
>3lvj_C Sulfurtransferase TUSA; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 2.44A {Escherichia coli} SCOP: d.68.3.3 PDB: 3lvk_B* 1dcj_A
Probab=26.29 E-value=1.2e+02 Score=21.62 Aligned_cols=41 Identities=7% Similarity=0.006 Sum_probs=28.9
Q ss_pred HHHHHHHHHhCCCeEEEEeCChhhHHHHHHHHHHcCCceecC
Q psy13427 116 ALNFVAHIAYRDGIVLFVGQSAQNSLLIEKTAQDCQEFAHTR 157 (268)
Q Consensus 116 A~~~I~~i~~~~g~ILfV~t~~~~~~~V~~~A~~~g~~~i~~ 157 (268)
+.+.+..+ ..+..+.++.+.+.+.+-|.++|+..|..+...
T Consensus 27 ~kkal~~l-~~G~~l~V~~dd~~a~~di~~~~~~~G~~~~~~ 67 (82)
T 3lvj_C 27 VRKTVRNM-QPGETLLIIADDPATTRDIPGFCTFMEHELVAK 67 (82)
T ss_dssp HHHHHHTS-CTTCEEEEEECCTTHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHhC-CCCCEEEEEECCccHHHHHHHHHHHCCCEEEEE
Confidence 33444444 345667777788888889999999999776543
No 94
>2r79_A Periplasmic binding protein; heme transport, transport prote; HET: HEM; 2.40A {Pseudomonas aeruginosa}
Probab=26.06 E-value=1.9e+02 Score=24.51 Aligned_cols=32 Identities=19% Similarity=0.343 Sum_probs=21.4
Q ss_pred cCCCceeeeecCCCCCCCCCchHHHhhhhCCCcccc
Q psy13427 175 TRLPDLVILTNTLTTVLEPNPAIGEAAKMCIPTVGI 210 (268)
Q Consensus 175 ~~~Pdlvivld~~~~~~~d~~aI~EA~~l~IPtIal 210 (268)
.-.||+||.... ......+..-.++||||+.+
T Consensus 57 ~l~PDLIi~~~~----~~~~~~~~~L~~~gipvv~~ 88 (283)
T 2r79_A 57 ALRPDILIGTEE----MGPPPVLKQLEGAGVRVETL 88 (283)
T ss_dssp TTCCSEEEECTT----CCCHHHHHHHHHTTCCEEEC
T ss_pred hcCCCEEEEeCc----cCcHHHHHHHHHcCCcEEEe
Confidence 457999997542 11234556667789999865
No 95
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=25.94 E-value=99 Score=25.90 Aligned_cols=60 Identities=13% Similarity=0.083 Sum_probs=36.4
Q ss_pred cCCCceeeeecCCCCCCCCCchHHHhhhhCCCccccccCCCCCCceeeeccCCCCchhHHHHHHHHHHH
Q psy13427 175 TRLPDLVILTNTLTTVLEPNPAIGEAAKMCIPTVGIVDSNCNPNLITYPVPGNDDTPSAIQYYCQVFKT 243 (268)
Q Consensus 175 ~~~Pdlvivld~~~~~~~d~~aI~EA~~l~IPtIalvDTn~~p~~IdypIP~NddS~~SI~li~~lL~~ 243 (268)
.+.+|.||+... ..+...+.++.. +||+|.+ |...+...+++.-. |...+.......|.+
T Consensus 64 ~~~vdgiIi~~~----~~~~~~~~~~~~-~iPvV~i-~~~~~~~~~~~V~~---D~~~~~~~a~~~L~~ 123 (289)
T 3k9c_A 64 RERCEAAILLGT----RFDTDELGALAD-RVPALVV-ARASGLPGVGAVRG---DDVAGITLAVDHLTE 123 (289)
T ss_dssp TTTEEEEEEETC----CCCHHHHHHHHT-TSCEEEE-SSCCSSTTSEEEEE---CHHHHHHHHHHHHHH
T ss_pred hCCCCEEEEECC----CCCHHHHHHHHc-CCCEEEE-cCCCCCCCCCEEEe---ChHHHHHHHHHHHHH
Confidence 457899988763 233456777766 9999865 66554444555533 345555555555543
No 96
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=25.94 E-value=1.1e+02 Score=25.76 Aligned_cols=59 Identities=15% Similarity=0.108 Sum_probs=36.3
Q ss_pred cCCCceeeeecCCCCCCCCCc-hHHHhhhhCCCccccccCCCCCCceeeeccCCCCchhHHHHHHHHHHH
Q psy13427 175 TRLPDLVILTNTLTTVLEPNP-AIGEAAKMCIPTVGIVDSNCNPNLITYPVPGNDDTPSAIQYYCQVFKT 243 (268)
Q Consensus 175 ~~~Pdlvivld~~~~~~~d~~-aI~EA~~l~IPtIalvDTn~~p~~IdypIP~NddS~~SI~li~~lL~~ 243 (268)
.+.+|.||+... ..+.. .+.++.. +||+|.+ |.+.+. .+++.-. |...+.......|.+
T Consensus 69 ~~~vdgiI~~~~----~~~~~~~~~~l~~-~iPvV~i-~~~~~~-~~~~V~~---D~~~~g~~a~~~L~~ 128 (303)
T 3kke_A 69 EGRVDGVLLQRR----EDFDDDMLAAVLE-GVPAVTI-NSRVPG-RVGSVIL---DDQKGGGIATEHLIT 128 (303)
T ss_dssp SCSSSEEEECCC----TTCCHHHHHHHHT-TSCEEEE-SCCCTT-CCCEEEE---CHHHHHHHHHHHHHH
T ss_pred hCCCcEEEEecC----CCCcHHHHHHHhC-CCCEEEE-CCcCCC-CCCEEEE---CcHHHHHHHHHHHHH
Confidence 467999988763 23334 7888888 9999876 655544 4555433 345555555554443
No 97
>2etv_A Iron(III) ABC transporter, periplasmic iron-bindi protein, putative; periplasmic iron-binding protein, structural genomics; HET: MLY; 1.70A {Thermotoga maritima} SCOP: c.92.2.4
Probab=25.92 E-value=1.6e+02 Score=26.07 Aligned_cols=38 Identities=29% Similarity=0.363 Sum_probs=22.4
Q ss_pred cchhhhhccccCCCceeeeecCCCCCCCCCchHHHhhhhCCCcccc
Q psy13427 165 TNSEKLFRAVTRLPDLVILTNTLTTVLEPNPAIGEAAKMCIPTVGI 210 (268)
Q Consensus 165 TN~~~~~~~~~~~Pdlvivld~~~~~~~d~~aI~EA~~l~IPtIal 210 (268)
.|...+. .-.||+||.... ......+-...+||||+.+
T Consensus 87 ~n~E~Il---al~PDLIi~~~~-----~~~~~~~~~~~~GiPvv~~ 124 (346)
T 2etv_A 87 PDLESLI---TLQPDVVFITYV-----DRXTAXDIQEXTGIPVVVL 124 (346)
T ss_dssp CCHHHHH---HHCCSEEEEESC-----CHHHHHHHHHHHTSCEEEE
T ss_pred CCHHHHh---cCCCCEEEEeCC-----ccchHHHHHHhcCCcEEEE
Confidence 3555542 346999997641 1112222245679999987
No 98
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=25.78 E-value=1.5e+02 Score=21.60 Aligned_cols=82 Identities=20% Similarity=0.193 Sum_probs=45.9
Q ss_pred CCCeEEEEeCChhhHHHHHHHHHHcCCceecCCcccCcccchhhhhcc-ccCCCceeeeecCCCCCCCC-CchHHHhhh-
Q psy13427 126 RDGIVLFVGQSAQNSLLIEKTAQDCQEFAHTRFWRQGMFTNSEKLFRA-VTRLPDLVILTNTLTTVLEP-NPAIGEAAK- 202 (268)
Q Consensus 126 ~~g~ILfV~t~~~~~~~V~~~A~~~g~~~i~~rW~gG~LTN~~~~~~~-~~~~Pdlvivld~~~~~~~d-~~aI~EA~~- 202 (268)
++.+||+|.........+....+..|..+.. ...++....... ....||+||+ |... +..+ ...+++...
T Consensus 4 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v-----~~~~~~~~a~~~l~~~~~dlii~-D~~l-~~~~g~~~~~~lr~~ 76 (144)
T 3kht_A 4 RSKRVLVVEDNPDDIALIRRVLDRKDIHCQL-----EFVDNGAKALYQVQQAKYDLIIL-DIGL-PIANGFEVMSAVRKP 76 (144)
T ss_dssp -CEEEEEECCCHHHHHHHHHHHHHTTCCEEE-----EEESSHHHHHHHHTTCCCSEEEE-CTTC-GGGCHHHHHHHHHSS
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHhcCCCeeE-----EEECCHHHHHHHhhcCCCCEEEE-eCCC-CCCCHHHHHHHHHhc
Confidence 4568999999999888888888877654222 122343332111 1346887765 4210 1112 123333332
Q ss_pred ---hCCCccccccCC
Q psy13427 203 ---MCIPTVGIVDSN 214 (268)
Q Consensus 203 ---l~IPtIalvDTn 214 (268)
-++|+|.+.+..
T Consensus 77 ~~~~~~pii~~s~~~ 91 (144)
T 3kht_A 77 GANQHTPIVILTDNV 91 (144)
T ss_dssp STTTTCCEEEEETTC
T ss_pred ccccCCCEEEEeCCC
Confidence 478998887654
No 99
>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}
Probab=25.54 E-value=1.7e+02 Score=27.81 Aligned_cols=62 Identities=13% Similarity=0.083 Sum_probs=37.9
Q ss_pred CCceeeeecCCCCCCCCCchHHHhhhhCCCccccccCC---CCCCceeeeccCCCCchhHHH-HHHHHHH
Q psy13427 177 LPDLVILTNTLTTVLEPNPAIGEAAKMCIPTVGIVDSN---CNPNLITYPVPGNDDTPSAIQ-YYCQVFK 242 (268)
Q Consensus 177 ~Pdlvivld~~~~~~~d~~aI~EA~~l~IPtIalvDTn---~~p~~IdypIP~NddS~~SI~-li~~lL~ 242 (268)
.+|+||+... +..++-.+.+|...|||+++-.+-= .....-.+.|=|-+ +..... ++.++|.
T Consensus 80 ~~d~vV~Spg---i~~~~p~l~~a~~~gi~v~~~~e~l~~~~~~~~~vIaVTGTn-GKTTTt~li~~iL~ 145 (524)
T 3hn7_A 80 APDLVVVGNA---MKRGMDVIEYMLDTGLRYTSGPQFLSEQVLQSRHVIAVAGTH-GKTTTTTMLAWILH 145 (524)
T ss_dssp CCSEEEECTT---CCTTSHHHHHHHHHTCCEEEHHHHHHHHTGGGSEEEEEECSS-CHHHHHHHHHHHHH
T ss_pred CCCEEEECCC---cCCCCHHHHHHHHCCCcEEEHHHHHHHHHhccCcEEEEECCC-CHHHHHHHHHHHHH
Confidence 4788876543 4677888999999999999765421 11112345666765 555544 4444443
No 100
>3uw1_A Ribose-5-phosphate isomerase A; ssgcid, seattle structural genomics center for infectious DI isomerase, ribose isomerase; HET: R5P; 1.71A {Burkholderia thailandensis} PDB: 3u7j_A*
Probab=25.49 E-value=1.7e+02 Score=25.53 Aligned_cols=75 Identities=19% Similarity=0.206 Sum_probs=46.1
Q ss_pred HHHHHHHHHhCCCeEEEEeCChhhHHHHHHHHHHcCCceecCCcccCcccchhhhhccccCCCceeeeecCCCCCCCCCc
Q psy13427 116 ALNFVAHIAYRDGIVLFVGQSAQNSLLIEKTAQDCQEFAHTRFWRQGMFTNSEKLFRAVTRLPDLVILTNTLTTVLEPNP 195 (268)
Q Consensus 116 A~~~I~~i~~~~g~ILfV~t~~~~~~~V~~~A~~~g~~~i~~rW~gG~LTN~~~~~~~~~~~Pdlvivld~~~~~~~d~~ 195 (268)
|+.++.... ..|.+++++|......+++.++++.. + +-|..||. .+
T Consensus 22 A~~~V~d~~-~~g~vIGLGtGST~~~~i~~L~~~~~------~-i~~~V~tS--------------------------~~ 67 (239)
T 3uw1_A 22 AARYVTDNV-PQGAVIGVGTGSTANCFIDALAAVKD------R-YRGAVSSS--------------------------VA 67 (239)
T ss_dssp HHHHHHHHS-CTTCEEEECCSHHHHHHHHHHHTTGG------G-SCEEEESS--------------------------HH
T ss_pred HHHHhhccC-cCCCEEEECccHHHHHHHHHHHhhhc------c-ceEEeCCc--------------------------HH
Confidence 444444321 34889999999999888887776521 0 01112222 23
Q ss_pred hHHHhhhhCCCccccccCCCCCCceeeeccCCC
Q psy13427 196 AIGEAAKMCIPTVGIVDSNCNPNLITYPVPGND 228 (268)
Q Consensus 196 aI~EA~~l~IPtIalvDTn~~p~~IdypIP~Nd 228 (268)
...+|...|||++.+-+. ..+|..|=|=|
T Consensus 68 t~~~~~~~Gi~l~~l~~~----~~iD~a~DGAD 96 (239)
T 3uw1_A 68 TTERLKSHGIRVFDLNEI----ESLQVYVDGAD 96 (239)
T ss_dssp HHHHHHHTTCCBCCGGGC----SCEEEEEECCS
T ss_pred HHHHHHHcCCcEEecccc----cccCEEEECCc
Confidence 556778899999876432 35777776655
No 101
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=24.92 E-value=1.4e+02 Score=21.54 Aligned_cols=84 Identities=13% Similarity=0.075 Sum_probs=46.6
Q ss_pred hCCCeEEEEeCChhhHHHHHHHHHHcCCceecCCcccCcccchhhhhcccc-----------CCCceeeeecCCCCCCCC
Q psy13427 125 YRDGIVLFVGQSAQNSLLIEKTAQDCQEFAHTRFWRQGMFTNSEKLFRAVT-----------RLPDLVILTNTLTTVLEP 193 (268)
Q Consensus 125 ~~~g~ILfV~t~~~~~~~V~~~A~~~g~~~i~~rW~gG~LTN~~~~~~~~~-----------~~Pdlvivld~~~~~~~d 193 (268)
..+.+||+|...+.....+....+..|..+.. ...++......... ..||+||+ |... +..+
T Consensus 4 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~~~v-----~~~~~~~~al~~l~~~~~~~~~~~~~~~dlvi~-D~~l-~~~~ 76 (149)
T 1k66_A 4 NATQPLLVVEDSDEDFSTFQRLLQREGVVNPI-----YRCITGDQALDFLYQTGSYCNPDIAPRPAVILL-DLNL-PGTD 76 (149)
T ss_dssp CTTSCEEEECCCHHHHHHHHHHHHHTTBCSCE-----EEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEE-CSCC-SSSC
T ss_pred CCCccEEEEECCHHHHHHHHHHHHHcCCCceE-----EEECCHHHHHHHHHhcccccCcccCCCCcEEEE-ECCC-CCCC
Confidence 35678999999998888888888776642111 12334333211111 56888775 4210 1112
Q ss_pred -CchHHHhhh----hCCCccccccCCC
Q psy13427 194 -NPAIGEAAK----MCIPTVGIVDSNC 215 (268)
Q Consensus 194 -~~aI~EA~~----l~IPtIalvDTn~ 215 (268)
...+++... -++|+|.+.+...
T Consensus 77 g~~~~~~l~~~~~~~~~~ii~~t~~~~ 103 (149)
T 1k66_A 77 GREVLQEIKQDEVLKKIPVVIMTTSSN 103 (149)
T ss_dssp HHHHHHHHTTSTTGGGSCEEEEESCCC
T ss_pred HHHHHHHHHhCcccCCCeEEEEeCCCC
Confidence 233444333 4689998876543
No 102
>2q8p_A Iron-regulated surface determinant E; helical backbone metal receptor superfamily, metal transport; HET: HEM; 1.95A {Staphylococcus aureus subsp} PDB: 2q8q_A*
Probab=24.90 E-value=1e+02 Score=25.62 Aligned_cols=31 Identities=10% Similarity=-0.073 Sum_probs=20.5
Q ss_pred cCCCceeeeecCCCCCCCCCchHHHhhhhCCCcccc
Q psy13427 175 TRLPDLVILTNTLTTVLEPNPAIGEAAKMCIPTVGI 210 (268)
Q Consensus 175 ~~~Pdlvivld~~~~~~~d~~aI~EA~~l~IPtIal 210 (268)
.-.||+||..+. ..........+++|||+.+
T Consensus 58 ~l~PDLIi~~~~-----~~~~~~~~L~~~gipvv~~ 88 (260)
T 2q8p_A 58 KLKPTHVLSVST-----IKDEMQPFYKQLNMKGYFY 88 (260)
T ss_dssp HTCCSEEEEEGG-----GHHHHHHHHHHHTSCCEEE
T ss_pred hcCCCEEEecCc-----cCHHHHHHHHHcCCcEEEe
Confidence 357999987541 1223455567789999875
No 103
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=24.87 E-value=3.4e+02 Score=23.44 Aligned_cols=99 Identities=16% Similarity=0.181 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEEeCChhhHHHHHHHHHHcCCc-eecCCcccCcccchhhhhccccCCCceeeeecC
Q psy13427 108 QSAELLRDALNFVAHIAYRDGIVLFVGQSAQNSLLIEKTAQDCQEF-AHTRFWRQGMFTNSEKLFRAVTRLPDLVILTNT 186 (268)
Q Consensus 108 ~T~~~L~~A~~~I~~i~~~~g~ILfV~t~~~~~~~V~~~A~~~g~~-~i~~rW~gG~LTN~~~~~~~~~~~Pdlvivld~ 186 (268)
+-...|.+|+..+..- .+-+++++|..+.. ..+++.++..|.. .+ .|.| .-.+... ....-|++++...
T Consensus 224 Kg~~~li~a~~~l~~~--~~~~l~i~G~g~~~-~~l~~~~~~~~l~~~v--~~~g-~~~~~~~----~~~~adv~v~ps~ 293 (394)
T 2jjm_A 224 KRVQDVVQAFAKIVTE--VDAKLLLVGDGPEF-CTILQLVKNLHIEDRV--LFLG-KQDNVAE----LLAMSDLMLLLSE 293 (394)
T ss_dssp GTHHHHHHHHHHHHHS--SCCEEEEECCCTTH-HHHHHHHHTTTCGGGB--CCCB-SCSCTHH----HHHTCSEEEECCS
T ss_pred cCHHHHHHHHHHHHhh--CCCEEEEECCchHH-HHHHHHHHHcCCCCeE--EEeC-chhhHHH----HHHhCCEEEeccc
Confidence 3344455555555432 34678888876643 3455666665531 11 2333 1122222 2334566665431
Q ss_pred CCCCCCCCchHHHhhhhCCCccccccCCCCCCce
Q psy13427 187 LTTVLEPNPAIGEAAKMCIPTVGIVDSNCNPNLI 220 (268)
Q Consensus 187 ~~~~~~d~~aI~EA~~l~IPtIalvDTn~~p~~I 220 (268)
...-..++-||..+|+|+|+- |....++.+
T Consensus 294 ---~e~~~~~~~EAma~G~PvI~~-~~~~~~e~v 323 (394)
T 2jjm_A 294 ---KESFGLVLLEAMACGVPCIGT-RVGGIPEVI 323 (394)
T ss_dssp ---CCSCCHHHHHHHHTTCCEEEE-CCTTSTTTC
T ss_pred ---cCCCchHHHHHHhcCCCEEEe-cCCChHHHh
Confidence 122257899999999999985 444444433
No 104
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=24.79 E-value=1.7e+02 Score=24.67 Aligned_cols=63 Identities=19% Similarity=0.151 Sum_probs=35.6
Q ss_pred CCCceeeeecCCCCCCCCCchHHHhhhhCCCccccccCCCCC-CceeeeccCCCCchhHHHHHHHHHHHH
Q psy13427 176 RLPDLVILTNTLTTVLEPNPAIGEAAKMCIPTVGIVDSNCNP-NLITYPVPGNDDTPSAIQYYCQVFKTA 244 (268)
Q Consensus 176 ~~Pdlvivld~~~~~~~d~~aI~EA~~l~IPtIalvDTn~~p-~~IdypIP~NddS~~SI~li~~lL~~a 244 (268)
+.+|.||+... +...-..+++++...+||+|.+ |+..+. ..+++.-+ |...+.......|.+.
T Consensus 56 ~~vdgiIi~~~--~~~~~~~~~~~~~~~~iPvV~~-~~~~~~~~~~~~V~~---d~~~~g~~a~~~L~~~ 119 (313)
T 2h3h_A 56 EGVNGIAIAPS--DPTAVIPTIKKALEMGIPVVTL-DTDSPDSGRYVYIGT---DNYQAGYTAGLIMKEL 119 (313)
T ss_dssp TTCSEEEECCS--STTTTHHHHHHHHHTTCCEEEE-SSCCTTSCCSCEEEC---CHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCC--ChHHHHHHHHHHHHCCCeEEEe-CCCCCCcceeEEECc---CHHHHHHHHHHHHHHH
Confidence 56888887642 1111124678888899999976 554332 23455432 3445555555555443
No 105
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=24.75 E-value=2.1e+02 Score=21.15 Aligned_cols=82 Identities=17% Similarity=0.121 Sum_probs=45.8
Q ss_pred hCCCeEEEEeCChhhHHHHHHHHHHcCCceecCCcccCcccchhhhhcc-ccCCCceeeeecCCCCCCCC-CchHHHhhh
Q psy13427 125 YRDGIVLFVGQSAQNSLLIEKTAQDCQEFAHTRFWRQGMFTNSEKLFRA-VTRLPDLVILTNTLTTVLEP-NPAIGEAAK 202 (268)
Q Consensus 125 ~~~g~ILfV~t~~~~~~~V~~~A~~~g~~~i~~rW~gG~LTN~~~~~~~-~~~~Pdlvivld~~~~~~~d-~~aI~EA~~ 202 (268)
..+.+||+|...+.....+.+..+..|.. + ...++....... ....||+||+ |... +..+ ...+++...
T Consensus 5 ~~~~~ILivdd~~~~~~~l~~~L~~~g~~-v------~~~~~~~~al~~l~~~~~dlii~-D~~l-~~~~g~~~~~~lr~ 75 (154)
T 3gt7_A 5 NRAGEILIVEDSPTQAEHLKHILEETGYQ-T------EHVRNGREAVRFLSLTRPDLIIS-DVLM-PEMDGYALCRWLKG 75 (154)
T ss_dssp --CCEEEEECSCHHHHHHHHHHHHTTTCE-E------EEESSHHHHHHHHTTCCCSEEEE-ESCC-SSSCHHHHHHHHHH
T ss_pred cCCCcEEEEeCCHHHHHHHHHHHHHCCCE-E------EEeCCHHHHHHHHHhCCCCEEEE-eCCC-CCCCHHHHHHHHHh
Confidence 45678999999999888888888776632 1 123443332111 1346888765 3110 1122 233333333
Q ss_pred ----hCCCccccccCCC
Q psy13427 203 ----MCIPTVGIVDSNC 215 (268)
Q Consensus 203 ----l~IPtIalvDTn~ 215 (268)
-++|+|.+.+...
T Consensus 76 ~~~~~~~pii~~s~~~~ 92 (154)
T 3gt7_A 76 QPDLRTIPVILLTILSD 92 (154)
T ss_dssp STTTTTSCEEEEECCCS
T ss_pred CCCcCCCCEEEEECCCC
Confidence 4789998876543
No 106
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=24.64 E-value=1.4e+02 Score=21.56 Aligned_cols=83 Identities=8% Similarity=0.103 Sum_probs=45.6
Q ss_pred CCCeEEEEeCChhhHHHHHHHHHHcCCceecCCcccCcccchhhhhccc-------cCCCceeeeecCCCCCCCC-CchH
Q psy13427 126 RDGIVLFVGQSAQNSLLIEKTAQDCQEFAHTRFWRQGMFTNSEKLFRAV-------TRLPDLVILTNTLTTVLEP-NPAI 197 (268)
Q Consensus 126 ~~g~ILfV~t~~~~~~~V~~~A~~~g~~~i~~rW~gG~LTN~~~~~~~~-------~~~Pdlvivld~~~~~~~d-~~aI 197 (268)
++.+||+|...+.....+....+..|..+.. ...++........ ...||+|++=-.. +..+ ...+
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~~~v-----~~~~~~~~a~~~l~~~~~~~~~~~dlii~D~~l--~~~~g~~~~ 78 (143)
T 2qvg_A 6 DKVDILYLEDDEVDIQSVERVFHKISSLIKI-----EIAKSGNQALDMLYGRNKENKIHPKLILLDINI--PKMNGIEFL 78 (143)
T ss_dssp -CCSEEEECCCHHHHHHHHHHHHHHCTTCCE-----EEESSHHHHHHHHHTCTTCCCCCCSEEEEETTC--TTSCHHHHH
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHhCCCceE-----EEECCHHHHHHHHHhcccccCCCCCEEEEecCC--CCCCHHHHH
Confidence 4567999999998888888887777642111 1223333221111 1468887753211 1122 2234
Q ss_pred HHhhh----hCCCccccccCCC
Q psy13427 198 GEAAK----MCIPTVGIVDSNC 215 (268)
Q Consensus 198 ~EA~~----l~IPtIalvDTn~ 215 (268)
++... -++|+|.+.+...
T Consensus 79 ~~l~~~~~~~~~~ii~ls~~~~ 100 (143)
T 2qvg_A 79 KELRDDSSFTDIEVFVLTAAYT 100 (143)
T ss_dssp HHHTTSGGGTTCEEEEEESCCC
T ss_pred HHHHcCccccCCcEEEEeCCCC
Confidence 44333 4688988876643
No 107
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2
Probab=24.55 E-value=1.1e+02 Score=22.43 Aligned_cols=62 Identities=10% Similarity=0.182 Sum_probs=39.5
Q ss_pred CCCeEEEEeCChhhHHHHHHHHHHcCCceecCCcccCcccchhhhhccccCCCceeeeecCCCCCCCCCchHHHhhhhCC
Q psy13427 126 RDGIVLFVGQSAQNSLLIEKTAQDCQEFAHTRFWRQGMFTNSEKLFRAVTRLPDLVILTNTLTTVLEPNPAIGEAAKMCI 205 (268)
Q Consensus 126 ~~g~ILfV~t~~~~~~~V~~~A~~~g~~~i~~rW~gG~LTN~~~~~~~~~~~Pdlvivld~~~~~~~d~~aI~EA~~l~I 205 (268)
.+..|.|.|+-...+.-+++.++..|..+... ..+.-|+||+-+. . ..=++.|..+||
T Consensus 9 ~G~~~v~TG~l~~~R~e~~~~i~~~Gg~v~~s----------------Vskkt~~LV~g~~-----~-gsK~~kA~~lgI 66 (92)
T 1l7b_A 9 KGLTFVITGELSRPREEVKALLRRLGAKVTDS----------------VSRKTSYLVVGEN-----P-GSKLEKARALGV 66 (92)
T ss_dssp TTCEEECSTTTTSCHHHHHHHHHHTTCEEESC----------------CSSSCCCBEECSS-----S-STTHHHHHCSSS
T ss_pred CCcEEEEecCCCCCHHHHHHHHHHcCCEEeCc----------------ccCCeeEEEeCCC-----C-ChHHHHHHHcCC
Confidence 45667777776556666777888887654321 1234566666441 1 245778899999
Q ss_pred Cccc
Q psy13427 206 PTVG 209 (268)
Q Consensus 206 PtIa 209 (268)
|+|.
T Consensus 67 ~Ii~ 70 (92)
T 1l7b_A 67 PTLT 70 (92)
T ss_dssp CCEE
T ss_pred cEEe
Confidence 9975
No 108
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=24.16 E-value=1.4e+02 Score=24.05 Aligned_cols=78 Identities=12% Similarity=0.102 Sum_probs=37.5
Q ss_pred eEEEEeCChhhHHHHHHHHHHcCCceecCCcccCcccchhhhhcccc--CCCceeeeecCCCCCCC--CCchHHHhhhhC
Q psy13427 129 IVLFVGQSAQNSLLIEKTAQDCQEFAHTRFWRQGMFTNSEKLFRAVT--RLPDLVILTNTLTTVLE--PNPAIGEAAKMC 204 (268)
Q Consensus 129 ~ILfV~t~~~~~~~V~~~A~~~g~~~i~~rW~gG~LTN~~~~~~~~~--~~Pdlvivld~~~~~~~--d~~aI~EA~~l~ 204 (268)
+|++|.+-..+...+.+..++.|.....-++- +........+. ..|+ +|+..-..++.. ...++.++...+
T Consensus 2 ~i~iiDn~~s~~~~i~~~l~~~G~~~~v~~~~----~~~~~i~~~l~~~~~~~-iil~gGpg~~~~~~~~~~l~~~~~~~ 76 (192)
T 1i1q_B 2 DILLLDNIDSFTWNLADQLRTNGHNVVIYRNH----IPAQTLIDRLATMKNPV-LMLSPGPGVPSEAGCMPELLTRLRGK 76 (192)
T ss_dssp EEEEEECSCSSHHHHHHHHHHTTCEEEEEETT----SCSHHHHHHHTTCSSEE-EEECCCSSCGGGSTTHHHHHHHHBTT
T ss_pred cEEEEECCccHHHHHHHHHHHCCCeEEEEECC----CCHHHHHHHhhhccCCe-EEECCCCcCchhCchHHHHHHHHhcC
Confidence 47777765556666666667777654332221 11122111111 1244 444431111111 112345555679
Q ss_pred CCccccc
Q psy13427 205 IPTVGIV 211 (268)
Q Consensus 205 IPtIalv 211 (268)
+|+.|+|
T Consensus 77 ~PilGIC 83 (192)
T 1i1q_B 77 LPIIGIC 83 (192)
T ss_dssp BCEEEET
T ss_pred CCEEEEC
Confidence 9999998
No 109
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=23.88 E-value=2e+02 Score=20.56 Aligned_cols=82 Identities=13% Similarity=0.085 Sum_probs=46.4
Q ss_pred hCCCeEEEEeCChhhHHHHHHHHHHcCCceecCCcccCcccchhhhhcc-ccCCCceeeeecCCCCCCCC-CchHHHhhh
Q psy13427 125 YRDGIVLFVGQSAQNSLLIEKTAQDCQEFAHTRFWRQGMFTNSEKLFRA-VTRLPDLVILTNTLTTVLEP-NPAIGEAAK 202 (268)
Q Consensus 125 ~~~g~ILfV~t~~~~~~~V~~~A~~~g~~~i~~rW~gG~LTN~~~~~~~-~~~~Pdlvivld~~~~~~~d-~~aI~EA~~ 202 (268)
..+.+||+|...+.....+....+..|.. +. ..++....... ....||+|++=-.. +..+ ...+++...
T Consensus 5 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~-v~------~~~~~~~a~~~l~~~~~dlii~d~~l--~~~~g~~~~~~l~~ 75 (142)
T 3cg4_A 5 EHKGDVMIVDDDAHVRIAVKTILSDAGFH-II------SADSGGQCIDLLKKGFSGVVLLDIMM--PGMDGWDTIRAILD 75 (142)
T ss_dssp -CCCEEEEECSCHHHHHHHHHHHHHTTCE-EE------EESSHHHHHHHHHTCCCEEEEEESCC--SSSCHHHHHHHHHH
T ss_pred CCCCeEEEEcCCHHHHHHHHHHHHHCCeE-EE------EeCCHHHHHHHHHhcCCCEEEEeCCC--CCCCHHHHHHHHHh
Confidence 46778999999998888888877776632 21 22333322111 13458887752211 1112 233444433
Q ss_pred ----hCCCccccccCCC
Q psy13427 203 ----MCIPTVGIVDSNC 215 (268)
Q Consensus 203 ----l~IPtIalvDTn~ 215 (268)
-.+|+|.+.+...
T Consensus 76 ~~~~~~~pii~~s~~~~ 92 (142)
T 3cg4_A 76 NSLEQGIAIVMLTAKNA 92 (142)
T ss_dssp TTCCTTEEEEEEECTTC
T ss_pred hcccCCCCEEEEECCCC
Confidence 4689999877644
No 110
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=23.27 E-value=1.3e+02 Score=28.75 Aligned_cols=76 Identities=20% Similarity=0.248 Sum_probs=46.4
Q ss_pred EEEEeCChhhHHHHHHHHHHcCCceecCCcccCcccchhhhhccccCCCceeeeecCCCCCCCC--CchHHHhhhhCCCc
Q psy13427 130 VLFVGQSAQNSLLIEKTAQDCQEFAHTRFWRQGMFTNSEKLFRAVTRLPDLVILTNTLTTVLEP--NPAIGEAAKMCIPT 207 (268)
Q Consensus 130 ILfV~t~~~~~~~V~~~A~~~g~~~i~~rW~gG~LTN~~~~~~~~~~~Pdlvivld~~~~~~~d--~~aI~EA~~l~IPt 207 (268)
|+++....+....|.+..+..|.+...-.|. ++.... . ...||.||+..--.++..+ ....+++...++|+
T Consensus 2 i~ilD~g~~~~~~i~r~l~~~G~~~~i~p~~----~~~~~i-~--~~~~dgiIlsGGp~s~~~~~~~~~~~~~~~~~~Pv 74 (503)
T 2ywb_A 2 VLVLDFGSQYTRLIARRLRELRAFSLILPGD----APLEEV-L--KHRPQALILSGGPRSVFDPDAPRPDPRLFSSGLPL 74 (503)
T ss_dssp EEEEESSCTTHHHHHHHHHTTTCCEEEEETT----CCHHHH-H--TTCCSEEEECCCSSCSSCTTCCCCCGGGGCSSCCE
T ss_pred EEEEECCCcHHHHHHHHHHHCCCEEEEEECC----CCHHHH-H--hcCCCEEEECCCCchhccCCCcchHHHHHhCCCCE
Confidence 7888888877778888888888765432221 122221 1 1258999887622222111 23446667789999
Q ss_pred ccccc
Q psy13427 208 VGIVD 212 (268)
Q Consensus 208 IalvD 212 (268)
.|||=
T Consensus 75 LGIC~ 79 (503)
T 2ywb_A 75 LGICY 79 (503)
T ss_dssp EEETH
T ss_pred EEECH
Confidence 99883
No 111
>3hhe_A Ribose-5-phosphate isomerase A; niaid, ssgcid, decode, SBRI, UW, STRU genomics, seattle structural genomics center for infectious; HET: 5RP; 2.30A {Bartonella henselae}
Probab=23.01 E-value=2.2e+02 Score=25.10 Aligned_cols=68 Identities=13% Similarity=0.197 Sum_probs=44.1
Q ss_pred CCCeEEEEeCChhhHHHHHHHHHHcCCceecCCcccCcccchhhhhccccCCCceeeeecCCCCCCCCCchHHHhhhhCC
Q psy13427 126 RDGIVLFVGQSAQNSLLIEKTAQDCQEFAHTRFWRQGMFTNSEKLFRAVTRLPDLVILTNTLTTVLEPNPAIGEAAKMCI 205 (268)
Q Consensus 126 ~~g~ILfV~t~~~~~~~V~~~A~~~g~~~i~~rW~gG~LTN~~~~~~~~~~~Pdlvivld~~~~~~~d~~aI~EA~~l~I 205 (268)
+.|.+++++|......+++.++++... | -++.+|.+. .+...+|...||
T Consensus 40 ~dg~vIgLGsGST~~~~i~~L~~~~~~---------g---------------l~ItvVttS-------~~ta~~l~~~GI 88 (255)
T 3hhe_A 40 EDDMRLGIGSGSTVNEFIPLLGERVAN---------G---------------LRVTCVATS-------QYSEQLCHKFGV 88 (255)
T ss_dssp CTTEEEEECCSHHHHHHHHHHHHHHHT---------T---------------CCEEEEESS-------HHHHHHHHHTTC
T ss_pred CCCCEEEECCcHHHHHHHHHHHHhhcc---------C---------------CcEEEEcCC-------HHHHHHHHHcCC
Confidence 578999999999998888887765310 0 023334331 235567788899
Q ss_pred CccccccCCCCCCceeeeccCCC
Q psy13427 206 PTVGIVDSNCNPNLITYPVPGND 228 (268)
Q Consensus 206 PtIalvDTn~~p~~IdypIP~Nd 228 (268)
|++.+-+. ..+|..|-|=|
T Consensus 89 ~l~~l~~~----~~iD~afdGAD 107 (255)
T 3hhe_A 89 PISTLEKI----PELDLDIDGAD 107 (255)
T ss_dssp CBCCTTTC----CSBSEEEECCS
T ss_pred cEEecccc----cccCEEEECCC
Confidence 99876322 25777776654
No 112
>3md9_A Hemin-binding periplasmic protein HMUT; transport protein, alpha beta protein, rigid helical backbon substrate-free, heme transport; 1.50A {Yersinia pestis} PDB: 3nu1_A*
Probab=22.96 E-value=1.9e+02 Score=23.95 Aligned_cols=32 Identities=13% Similarity=0.322 Sum_probs=21.9
Q ss_pred cCCCceeeeecCCCCCCCCCchHHHhhhhCCCcccc
Q psy13427 175 TRLPDLVILTNTLTTVLEPNPAIGEAAKMCIPTVGI 210 (268)
Q Consensus 175 ~~~Pdlvivld~~~~~~~d~~aI~EA~~l~IPtIal 210 (268)
.-.||+||.... ......+..-.+.||||+.+
T Consensus 57 ~l~PDlIi~~~~----~~~~~~~~~L~~~gipvv~~ 88 (255)
T 3md9_A 57 AMKPTMLLVSEL----AQPSLVLTQIASSGVNVVTV 88 (255)
T ss_dssp TTCCSEEEEETT----CSCHHHHHHHHHTTCEEEEE
T ss_pred ccCCCEEEEcCC----cCchhHHHHHHHcCCcEEEe
Confidence 568999998652 11224556667789999876
No 113
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=22.94 E-value=1.9e+02 Score=23.44 Aligned_cols=63 Identities=19% Similarity=0.258 Sum_probs=37.5
Q ss_pred CC-CceeeeecCCCCCCCCCchHHHhhhhCCCccccccCCCCCCc-eeeeccCCCCchhHHHHHHHHHHHH
Q psy13427 176 RL-PDLVILTNTLTTVLEPNPAIGEAAKMCIPTVGIVDSNCNPNL-ITYPVPGNDDTPSAIQYYCQVFKTA 244 (268)
Q Consensus 176 ~~-Pdlvivld~~~~~~~d~~aI~EA~~l~IPtIalvDTn~~p~~-IdypIP~NddS~~SI~li~~lL~~a 244 (268)
+. +|.||+... +.......++++...+||+|.+ |++.+... ..+.-+ |...+.......|.+.
T Consensus 57 ~~~vdgii~~~~--~~~~~~~~~~~~~~~~ipvV~~-~~~~~~~~~~~~V~~---d~~~~g~~~~~~l~~~ 121 (276)
T 3ksm_A 57 QAPPDALILAPN--SAEDLTPSVAQYRARNIPVLVV-DSDLAGDAHQGLVAT---DNYAAGQLAARALLAT 121 (276)
T ss_dssp HSCCSEEEECCS--STTTTHHHHHHHHHTTCCEEEE-SSCCSSSCSSEEEEC---CHHHHHHHHHHHHHHH
T ss_pred hCCCCEEEEeCC--CHHHHHHHHHHHHHCCCcEEEE-ecCCCCCCcceEEcc---CHHHHHHHHHHHHHHh
Confidence 35 899888652 1123456788899999999877 55444332 344322 3455555555555443
No 114
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=22.69 E-value=79 Score=26.26 Aligned_cols=63 Identities=19% Similarity=0.150 Sum_probs=37.7
Q ss_pred cCCCceeeeecCCCCCCCCCchHHHhhhhCCCccccccCCCCC-CceeeeccCCCCchhHHHHHHHHHHH
Q psy13427 175 TRLPDLVILTNTLTTVLEPNPAIGEAAKMCIPTVGIVDSNCNP-NLITYPVPGNDDTPSAIQYYCQVFKT 243 (268)
Q Consensus 175 ~~~Pdlvivld~~~~~~~d~~aI~EA~~l~IPtIalvDTn~~p-~~IdypIP~NddS~~SI~li~~lL~~ 243 (268)
.+.+|.||+.... ......+++++...+||+|.+ |+..+. ..+++.-+ |...+.......|.+
T Consensus 62 ~~~vdgiI~~~~~--~~~~~~~~~~~~~~~iPvV~~-~~~~~~~~~~~~V~~---D~~~~g~~~~~~l~~ 125 (293)
T 3l6u_A 62 HLKVDAIFITTLD--DVYIGSAIEEAKKAGIPVFAI-DRMIRSDAVVSSITS---NNQMIGEQLASYIKN 125 (293)
T ss_dssp HTTCSEEEEECSC--TTTTHHHHHHHHHTTCCEEEE-SSCCCCTTCSEEEEE---CHHHHHHHHHHHHHH
T ss_pred HcCCCEEEEecCC--hHHHHHHHHHHHHcCCCEEEe-cCCCCCCcceeEEec---CHHHHHHHHHHHHHH
Confidence 3579999887531 111126788888899999877 554443 34555533 344555555555544
No 115
>1jdq_A TM006 protein, hypothetical protein TM0983; structural genomics; NMR {Thermotoga maritima} SCOP: d.68.3.3
Probab=22.64 E-value=1.4e+02 Score=22.29 Aligned_cols=42 Identities=7% Similarity=-0.076 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhCCCeEEEEeCChhhHHHHHHHHHHcCCceecC
Q psy13427 115 DALNFVAHIAYRDGIVLFVGQSAQNSLLIEKTAQDCQEFAHTR 157 (268)
Q Consensus 115 ~A~~~I~~i~~~~g~ILfV~t~~~~~~~V~~~A~~~g~~~i~~ 157 (268)
++.+.+..+ ..|..+.++.+.+.+.+-|.++|+..|..+...
T Consensus 42 ~tkkaL~~l-~~Ge~L~Vl~dd~~a~~dI~~~~~~~G~~v~~~ 83 (98)
T 1jdq_A 42 ETKRALQNM-KPGEILEVWIDYPMSKERIPETVKKLGHEVLEI 83 (98)
T ss_dssp HHHHHHHTC-CTTCEEEEEESSCTHHHHHHHHHHHSSCCEEEE
T ss_pred HHHHHHHhC-CCCCEEEEEECCccHHHHHHHHHHHCCCEEEEE
Confidence 333444444 345567778888888889999999999776543
No 116
>2pjm_A Ribose-5-phosphate isomerase A; 3D-structure, structural genomics, pentose phosphate pathway, carbon fixation, NPPSFA; 1.78A {Methanocaldococcus jannaschii} PDB: 3ixq_A*
Probab=22.57 E-value=2.1e+02 Score=24.61 Aligned_cols=24 Identities=25% Similarity=0.548 Sum_probs=20.1
Q ss_pred CCCeEEEEeCChhhHHHHHHHHHH
Q psy13427 126 RDGIVLFVGQSAQNSLLIEKTAQD 149 (268)
Q Consensus 126 ~~g~ILfV~t~~~~~~~V~~~A~~ 149 (268)
+.|.++|+++......+++.++++
T Consensus 19 ~~g~~IglgsGST~~~~~~~L~~~ 42 (226)
T 2pjm_A 19 KDGMVIGLGTGSTAALFIRELGNR 42 (226)
T ss_dssp CTTCEEEECCSHHHHHHHHHHHHH
T ss_pred CCCCEEEECCCHHHHHHHHHHHhh
Confidence 568899999999988888877765
No 117
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=22.56 E-value=2.3e+02 Score=24.72 Aligned_cols=92 Identities=17% Similarity=0.094 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEeCCh----hhHHHHHHHHHHcCCc-eecCCcccCcccc--hhhhhccccCCCceeee
Q psy13427 111 ELLRDALNFVAHIAYRDGIVLFVGQSA----QNSLLIEKTAQDCQEF-AHTRFWRQGMFTN--SEKLFRAVTRLPDLVIL 183 (268)
Q Consensus 111 ~~L~~A~~~I~~i~~~~g~ILfV~t~~----~~~~~V~~~A~~~g~~-~i~~rW~gG~LTN--~~~~~~~~~~~Pdlviv 183 (268)
..|.+|+..+..- ..+-+++++|..+ .....+++.++..|.. .+ .|.| .+.+ .... ......-|++++
T Consensus 247 ~~li~a~~~l~~~-~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~~~~~V--~~~G-~~~~~~~~~~-~~~~~~ad~~v~ 321 (416)
T 2x6q_A 247 FDVIEIYRKVKEK-IPGVQLLLVGVMAHDDPEGWIYFEKTLRKIGEDYDV--KVLT-NLIGVHAREV-NAFQRASDVILQ 321 (416)
T ss_dssp HHHHHHHHHHHHH-CTTCEEEEEECCCTTCHHHHHHHHHHHHHHTTCTTE--EEEE-GGGTCCHHHH-HHHHHHCSEEEE
T ss_pred HHHHHHHHHHHHh-CCCeEEEEEecCcccchhHHHHHHHHHHHhCCCCcE--EEec-ccCCCCHHHH-HHHHHhCCEEEE
Confidence 3444555444432 1346778888764 2344556666665531 11 1222 1111 0110 011233556554
Q ss_pred ecCCCCCCCCCchHHHhhhhCCCcccc
Q psy13427 184 TNTLTTVLEPNPAIGEAAKMCIPTVGI 210 (268)
Q Consensus 184 ld~~~~~~~d~~aI~EA~~l~IPtIal 210 (268)
... ...-..++-||..+|+|+|+-
T Consensus 322 ps~---~E~~~~~~lEAma~G~PvI~~ 345 (416)
T 2x6q_A 322 MSI---REGFGLTVTEAMWKGKPVIGR 345 (416)
T ss_dssp CCS---SCSSCHHHHHHHHTTCCEEEE
T ss_pred CCC---cCCCccHHHHHHHcCCCEEEc
Confidence 331 122357899999999999984
No 118
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A
Probab=22.42 E-value=2.1e+02 Score=21.71 Aligned_cols=63 Identities=6% Similarity=0.022 Sum_probs=41.0
Q ss_pred CCCeEEEEeCChh-hHHHHHHHHHHcCCceecCCcccCcccchhhhhccccCCCceeeeecCCCCCCCCCchHHHhhhhC
Q psy13427 126 RDGIVLFVGQSAQ-NSLLIEKTAQDCQEFAHTRFWRQGMFTNSEKLFRAVTRLPDLVILTNTLTTVLEPNPAIGEAAKMC 204 (268)
Q Consensus 126 ~~g~ILfV~t~~~-~~~~V~~~A~~~g~~~i~~rW~gG~LTN~~~~~~~~~~~Pdlvivld~~~~~~~d~~aI~EA~~l~ 204 (268)
.+..|.|.|+-.. .+.-+++.++..|..... .. .+.=|+||+=+ .....=++.|..+|
T Consensus 34 ~G~~~v~TG~l~~~~R~e~~~~i~~~Gg~v~~------sV----------SkkTd~LV~G~-----~~g~sK~~kA~~lg 92 (109)
T 2k6g_A 34 EGLIFVITGVLESIERDEAKSLIERYGGKVTG------NV----------SKKTNYLVMGR-----DSGQSKSDKAAALG 92 (109)
T ss_dssp TTCEEEEESBCSSCCHHHHHHHHHHTTCEEES------SC----------CTTCCEEEECB-----CCCHHHHHHHHHHT
T ss_pred CCCEEEEeeeCCCCCHHHHHHHHHHcCCEeeC------cc----------cCCceEEEECC-----CCChHHHHHHHHcC
Confidence 5677899998753 566677788888765432 11 23446666643 12225677899999
Q ss_pred CCccc
Q psy13427 205 IPTVG 209 (268)
Q Consensus 205 IPtIa 209 (268)
||+|.
T Consensus 93 I~Ii~ 97 (109)
T 2k6g_A 93 TKIID 97 (109)
T ss_dssp CEEEC
T ss_pred CeEEe
Confidence 99975
No 119
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=22.24 E-value=2.3e+02 Score=23.64 Aligned_cols=63 Identities=6% Similarity=0.028 Sum_probs=36.3
Q ss_pred cCCCceeeeecCCCCCCCCCchHHHhhhhCC--C----ccccccCC----CCCCceeeeccC-CCCchhHHHHHHHHH
Q psy13427 175 TRLPDLVILTNTLTTVLEPNPAIGEAAKMCI--P----TVGIVDSN----CNPNLITYPVPG-NDDTPSAIQYYCQVF 241 (268)
Q Consensus 175 ~~~Pdlvivld~~~~~~~d~~aI~EA~~l~I--P----tIalvDTn----~~p~~IdypIP~-NddS~~SI~li~~lL 241 (268)
...|+.||..|. ..-..+++.+...|+ | +||+-|+. ..|.+-++-.|. -.-+..++.+++..+
T Consensus 185 ~~~~~ai~~~nd----~~A~g~~~al~~~G~~vP~di~vig~D~~~~~~~~~p~lttv~~~~~~~~g~~av~~L~~~i 258 (294)
T 3qk7_A 185 EVPPTAIITDCN----MLGDGVASALDKAGLLGGEGISLIAYDGLPDDSLLDIAVTPIVQNTRTSVGKQIASMICDLL 258 (294)
T ss_dssp SSCCSEEEESSH----HHHHHHHHHHHHTTCSSTTSCEEEEETCSCTTCSCCSCCEEEECCCHHHHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCH----HHHHHHHHHHHHcCCCCCCceEEEeecCccHHhhcCCCceeEecCcHHHHHHHHHHHHHHHh
Confidence 357899988651 001234455555554 3 78887765 345566666666 455666666555544
No 120
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=22.24 E-value=2.3e+02 Score=20.50 Aligned_cols=81 Identities=15% Similarity=0.118 Sum_probs=45.0
Q ss_pred CCCeEEEEeCChhhHHHHHHHHHHcCCceecCCcccCcccchhhhhccc-c-CCCceeeeecCCCCCC-CCC-chHHHhh
Q psy13427 126 RDGIVLFVGQSAQNSLLIEKTAQDCQEFAHTRFWRQGMFTNSEKLFRAV-T-RLPDLVILTNTLTTVL-EPN-PAIGEAA 201 (268)
Q Consensus 126 ~~g~ILfV~t~~~~~~~V~~~A~~~g~~~i~~rW~gG~LTN~~~~~~~~-~-~~Pdlvivld~~~~~~-~d~-~aI~EA~ 201 (268)
++.+||+|...+.....+....+..|.... ..++....+... . ..||+||+ |..- +. .+. ..+++..
T Consensus 4 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~-------~~~~~~~a~~~l~~~~~~dlvi~-D~~l-~~~~~g~~~~~~l~ 74 (140)
T 3h5i_A 4 KDKKILIVEDSKFQAKTIANILNKYGYTVE-------IALTGEAAVEKVSGGWYPDLILM-DIEL-GEGMDGVQTALAIQ 74 (140)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHTTCEEE-------EESSHHHHHHHHHTTCCCSEEEE-ESSC-SSSCCHHHHHHHHH
T ss_pred CCcEEEEEeCCHHHHHHHHHHHHHcCCEEE-------EecChHHHHHHHhcCCCCCEEEE-eccC-CCCCCHHHHHHHHH
Confidence 457899999999988888888887763221 123433322112 2 57898765 4210 11 121 2233222
Q ss_pred h-hCCCccccccCCC
Q psy13427 202 K-MCIPTVGIVDSNC 215 (268)
Q Consensus 202 ~-l~IPtIalvDTn~ 215 (268)
. -++|+|.+.+...
T Consensus 75 ~~~~~~ii~ls~~~~ 89 (140)
T 3h5i_A 75 QISELPVVFLTAHTE 89 (140)
T ss_dssp HHCCCCEEEEESSSS
T ss_pred hCCCCCEEEEECCCC
Confidence 2 4899998876654
No 121
>3goc_A Endonuclease V; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: YES; 1.60A {Streptomyces avermitilis}
Probab=22.03 E-value=80 Score=27.79 Aligned_cols=57 Identities=16% Similarity=0.156 Sum_probs=34.3
Q ss_pred CCcccCcccchhh-----hhccccCCCceeeeecCC-CCCCCCCchHHHhhhhCCCccccccC
Q psy13427 157 RFWRQGMFTNSEK-----LFRAVTRLPDLVILTNTL-TTVLEPNPAIGEAAKMCIPTVGIVDS 213 (268)
Q Consensus 157 ~rW~gG~LTN~~~-----~~~~~~~~Pdlvivld~~-~~~~~d~~aI~EA~~l~IPtIalvDT 213 (268)
--++||.|.=... .++.+...||+++|=.-. --+..--.|-.=.-.+++||||+.=+
T Consensus 82 ~PYIPG~LaFRE~P~ll~al~~L~~~PdlllvDG~GiaHPRr~GlAsHlGv~l~~PtIGVAKs 144 (237)
T 3goc_A 82 FPYVPGLLAFREIPTVLAALDALPCPPGLIVCDGYGVAHPRRFGLASHLGVLTGLPTIGVAKN 144 (237)
T ss_dssp SCCCTTCGGGGTHHHHHHHHHTSSSCCSEEEEESCSSCSTTSCCHHHHHHHHHCSCEEEEESS
T ss_pred CCCCcchhhhhhHHHHHHHHHhcCCCCCEEEEeCceeecCCCcchhheeeeecCCCEEeeecc
Confidence 3477888764331 133456789998863200 01233345666667789999998544
No 122
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=21.83 E-value=2.7e+02 Score=21.32 Aligned_cols=75 Identities=11% Similarity=-0.015 Sum_probs=44.5
Q ss_pred CCeEEEEeCCh-hhHHHHHHHHHHcCCceecCCcccCcccchhhhhccccCCCceeeeecCCCCCCCCCchHHHhhhhCC
Q psy13427 127 DGIVLFVGQSA-QNSLLIEKTAQDCQEFAHTRFWRQGMFTNSEKLFRAVTRLPDLVILTNTLTTVLEPNPAIGEAAKMCI 205 (268)
Q Consensus 127 ~g~ILfV~t~~-~~~~~V~~~A~~~g~~~i~~rW~gG~LTN~~~~~~~~~~~Pdlvivld~~~~~~~d~~aI~EA~~l~I 205 (268)
+-+++++|..+ .....+++.++..+ . + .|+-|.+++... ......-|++++... ...-..++.||..+|.
T Consensus 70 ~~~l~i~G~~~~~~~~~l~~~~~~~~-~-v--~~~~g~~~~~~~--~~~~~~ad~~l~ps~---~e~~~~~~~Ea~a~G~ 140 (200)
T 2bfw_A 70 EMRFIIIGKGDPELEGWARSLEEKHG-N-V--KVITEMLSREFV--RELYGSVDFVIIPSY---FEPFGLVALEAMCLGA 140 (200)
T ss_dssp GEEEEEECCBCHHHHHHHHHHHHHCT-T-E--EEECSCCCHHHH--HHHHTTCSEEEECCS---CCSSCHHHHHHHHTTC
T ss_pred CeEEEEECCCChHHHHHHHHHHHhcC-C-E--EEEeccCCHHHH--HHHHHHCCEEEECCC---CCCccHHHHHHHHCCC
Confidence 45678888765 13445666777766 1 1 342455553221 123455677766432 1122578999999999
Q ss_pred Ccccc
Q psy13427 206 PTVGI 210 (268)
Q Consensus 206 PtIal 210 (268)
|+|+-
T Consensus 141 PvI~~ 145 (200)
T 2bfw_A 141 IPIAS 145 (200)
T ss_dssp EEEEE
T ss_pred CEEEe
Confidence 99986
No 123
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=21.72 E-value=1.8e+02 Score=24.13 Aligned_cols=61 Identities=11% Similarity=0.122 Sum_probs=29.6
Q ss_pred cCCCceeeeecCCCCCCCCCchHHHhhhhCCC------ccccccCC----CCCCceeeeccCCCCchhHHHHHHH
Q psy13427 175 TRLPDLVILTNTLTTVLEPNPAIGEAAKMCIP------TVGIVDSN----CNPNLITYPVPGNDDTPSAIQYYCQ 239 (268)
Q Consensus 175 ~~~Pdlvivld~~~~~~~d~~aI~EA~~l~IP------tIalvDTn----~~p~~IdypIP~NddS~~SI~li~~ 239 (268)
...|+.||..+. ..-..+++.+...|+. +||+-|+. ..|...++-.|.-.-+..++.+++.
T Consensus 184 ~~~~~ai~~~~d----~~a~g~~~al~~~g~~vP~di~vvg~d~~~~~~~~~p~lttv~~~~~~~g~~av~~l~~ 254 (291)
T 3egc_A 184 ADRPTALLTSSH----RITEGAMQALNVLGLRYGPDVEIVSFDNLPWMAFLDPPLPVVEQPTRRIGQEAMRMLIH 254 (291)
T ss_dssp -CCCSEEEESSH----HHHHHHHHHHHHHTCCBTTTBEEEEESCCGGGGGSSSCCCEEECCHHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCc----HHHHHHHHHHHHcCCCCCCceEEEEecCchhHhhcCCCceEEEECHHHHHHHHHHHHHH
Confidence 457899988651 0111234444445543 77775553 2334445554444444444444443
No 124
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=21.64 E-value=85 Score=26.04 Aligned_cols=123 Identities=11% Similarity=-0.121 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCChhh---H---HHHHHHHHHc-CCceecCCccc-Ccccchhh---hhc---cccC---
Q psy13427 114 RDALNFVAHIAYRDGIVLFVGQSAQN---S---LLIEKTAQDC-QEFAHTRFWRQ-GMFTNSEK---LFR---AVTR--- 176 (268)
Q Consensus 114 ~~A~~~I~~i~~~~g~ILfV~t~~~~---~---~~V~~~A~~~-g~~~i~~rW~g-G~LTN~~~---~~~---~~~~--- 176 (268)
+.|...+.......++|.|++..... . .-.++..+.. |...+...|.. |..+ ... ... ....
T Consensus 112 ~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~ 190 (291)
T 3l49_A 112 AELALQMVADLGGKGNVLVFNGFYSVPVCKIRYDQMKYVLEAFPDVKIIEPELRDVIPNT-IQSAYSNVTDMLTKYPNEG 190 (291)
T ss_dssp HHHHHHHHHHHTTCEEEEEECSCTTSHHHHHHHHHHHHHHHTCTTEEECSSCBCCCSSSH-HHHHHHHHHHHHHHCCSTT
T ss_pred HHHHHHHHHHcCCCceEEEEeCCCCCchHHHHHHHHHHHHHHCCCCEEEeeeccCCCCCC-HHHHHHHHHHHHHhCCCcC
Confidence 34555555543455789999754321 1 1223344444 33334444432 1111 111 000 1123
Q ss_pred CCceeeeecCCCCCCCCCchHHHhhhhC---CCccccccCCC---------CCCceeeeccCCCCchhHHHHHHHHH
Q psy13427 177 LPDLVILTNTLTTVLEPNPAIGEAAKMC---IPTVGIVDSNC---------NPNLITYPVPGNDDTPSAIQYYCQVF 241 (268)
Q Consensus 177 ~Pdlvivld~~~~~~~d~~aI~EA~~l~---IPtIalvDTn~---------~p~~IdypIP~NddS~~SI~li~~lL 241 (268)
.||.||..+. ..-..+++.+...| |.+||+-|+.. .|...++-.|.-.-+..++.+++..+
T Consensus 191 ~~~ai~~~~d----~~a~g~~~al~~~g~~di~vvg~d~~~~~~~~i~~~~~p~lttv~~~~~~~g~~av~~l~~~i 263 (291)
T 3l49_A 191 DVGAIWACWD----VPMIGATQALQAAGRTDIRTYGVDGSPEFVEMVADPESPAGAVAAQQPSEIGKLAVQNVARHL 263 (291)
T ss_dssp SCCEEEESSH----HHHHHHHHHHHHTTCCSCEEEEEECCHHHHHHHHCTTSCEEEEEECCHHHHHHHHHHHHHHHH
T ss_pred CcCEEEECCC----chHHHHHHHHHHcCCCCeEEEEecCCHHHHHHHHCCCCCeEEEEecCHHHHHHHHHHHHHHHh
Confidence 6899987651 01112344444444 58888866643 45556666555544555555544433
No 125
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=21.62 E-value=1.5e+02 Score=24.97 Aligned_cols=18 Identities=11% Similarity=0.080 Sum_probs=14.8
Q ss_pred CchHHHhhhhCCCccccc
Q psy13427 194 NPAIGEAAKMCIPTVGIV 211 (268)
Q Consensus 194 ~~aI~EA~~l~IPtIalv 211 (268)
..+|+|+...|.|++|+|
T Consensus 103 ~~~l~~~~~~G~p~~G~s 120 (229)
T 1fy2_A 103 LAPMADRVKRGALYIGWS 120 (229)
T ss_dssp HHHHHHHHHTTCEEEEET
T ss_pred HHHHHHHHHcCCEEEEEC
Confidence 358888888899999887
No 126
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=21.61 E-value=2.2e+02 Score=24.04 Aligned_cols=77 Identities=13% Similarity=0.088 Sum_probs=41.9
Q ss_pred CCeEEEEeCChhhHHHHHHHHHHcCCceecCCcccCcccchhhhhccccCCCceeeeecCC----C---CCCCCCchHHH
Q psy13427 127 DGIVLFVGQSAQNSLLIEKTAQDCQEFAHTRFWRQGMFTNSEKLFRAVTRLPDLVILTNTL----T---TVLEPNPAIGE 199 (268)
Q Consensus 127 ~g~ILfV~t~~~~~~~V~~~A~~~g~~~i~~rW~gG~LTN~~~~~~~~~~~Pdlvivld~~----~---~~~~d~~aI~E 199 (268)
+-+++++|..+.. ..+++.++..+... .| -|...+.... .....-|++++...- + ....-..++.|
T Consensus 188 ~~~l~i~G~g~~~-~~l~~~~~~~~~~v---~~-~g~~~~~~l~--~~~~~adv~v~ps~~~~~~~~~~~~E~~~~~~~E 260 (342)
T 2iuy_A 188 GRRLVLAGPAWEP-EYFDEITRRYGSTV---EP-IGEVGGERRL--DLLASAHAVLAMSQAVTGPWGGIWCEPGATVVSE 260 (342)
T ss_dssp TCCEEEESCCCCH-HHHHHHHHHHTTTE---EE-CCCCCHHHHH--HHHHHCSEEEECCCCCCCTTCSCCCCCCCHHHHH
T ss_pred CcEEEEEeCcccH-HHHHHHHHHhCCCE---EE-eccCCHHHHH--HHHHhCCEEEECCcccccccccccccCccHHHHH
Confidence 5678889886533 34455666655221 12 3444554210 123345666553310 0 00122468999
Q ss_pred hhhhCCCcccc
Q psy13427 200 AAKMCIPTVGI 210 (268)
Q Consensus 200 A~~l~IPtIal 210 (268)
|..+|+|+|+-
T Consensus 261 Ama~G~PvI~s 271 (342)
T 2iuy_A 261 AAVSGTPVVGT 271 (342)
T ss_dssp HHHTTCCEEEC
T ss_pred HHhcCCCEEEc
Confidence 99999999985
No 127
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=21.49 E-value=2.1e+02 Score=20.92 Aligned_cols=82 Identities=13% Similarity=0.094 Sum_probs=45.3
Q ss_pred CCeEEEEeCChhhHHHHHHHHHHcCCceecCCcccCcccchhhhhcc----------ccCCCceeeeecCCCCCCCC-Cc
Q psy13427 127 DGIVLFVGQSAQNSLLIEKTAQDCQEFAHTRFWRQGMFTNSEKLFRA----------VTRLPDLVILTNTLTTVLEP-NP 195 (268)
Q Consensus 127 ~g~ILfV~t~~~~~~~V~~~A~~~g~~~i~~rW~gG~LTN~~~~~~~----------~~~~Pdlvivld~~~~~~~d-~~ 195 (268)
+-+||+|...+.....+++..+..|..+... ..++...-... ....||+||+ |..- +..+ ..
T Consensus 4 ~~~ILivddd~~~~~~l~~~L~~~g~~~~v~-----~~~~~~~al~~l~~~~~~~~~~~~~~dliil-D~~l-~~~~g~~ 76 (152)
T 3heb_A 4 SVTIVMIEDDLGHARLIEKNIRRAGVNNEII-----AFTDGTSALNYLFGDDKSGRVSAGRAQLVLL-DLNL-PDMTGID 76 (152)
T ss_dssp -CEEEEECCCHHHHHHHHHHHHHTTCCCCEE-----EESSHHHHHHHHHCTTSSSGGGTTCBEEEEE-CSBC-SSSBHHH
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCCCcceEE-----EeCCHHHHHHHHhccccccccccCCCCEEEE-eCCC-CCCcHHH
Confidence 4679999999998888888888877532111 12333322111 1456888765 4210 1122 23
Q ss_pred hHHHhhh----hCCCccccccCCC
Q psy13427 196 AIGEAAK----MCIPTVGIVDSNC 215 (268)
Q Consensus 196 aI~EA~~----l~IPtIalvDTn~ 215 (268)
.+++... -++|+|.+.+...
T Consensus 77 ~~~~lr~~~~~~~~pii~~t~~~~ 100 (152)
T 3heb_A 77 ILKLVKENPHTRRSPVVILTTTDD 100 (152)
T ss_dssp HHHHHHHSTTTTTSCEEEEESCCC
T ss_pred HHHHHHhcccccCCCEEEEecCCC
Confidence 3444333 4788888876543
No 128
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=21.41 E-value=1.7e+02 Score=24.15 Aligned_cols=65 Identities=12% Similarity=-0.059 Sum_probs=37.7
Q ss_pred cCCCceeeeecCCCC-CCCCCchHHHhhhhCCCccccccCCCCCCceeeeccCCCCchhHHHHHHHHHHH
Q psy13427 175 TRLPDLVILTNTLTT-VLEPNPAIGEAAKMCIPTVGIVDSNCNPNLITYPVPGNDDTPSAIQYYCQVFKT 243 (268)
Q Consensus 175 ~~~Pdlvivld~~~~-~~~d~~aI~EA~~l~IPtIalvDTn~~p~~IdypIP~NddS~~SI~li~~lL~~ 243 (268)
.+.+|.||+...... .......+.++...+||+|.+ |+..+...+++.-. |...+.......|.+
T Consensus 69 ~~~vdgiIi~~~~~~~~~~~~~~~~~~~~~~iPvV~~-~~~~~~~~~~~V~~---d~~~~~~~a~~~L~~ 134 (298)
T 3tb6_A 69 SQHIDGLIVEPTKSALQTPNIGYYLNLEKNGIPFAMI-NASYAELAAPSFTL---DDVKGGMMAAEHLLS 134 (298)
T ss_dssp HTCCSEEEECCSSTTSCCTTHHHHHHHHHTTCCEEEE-SSCCTTCSSCEEEE---CHHHHHHHHHHHHHH
T ss_pred HCCCCEEEEecccccccCCcHHHHHHHHhcCCCEEEE-ecCcCCCCCCEEEe---CcHHHHHHHHHHHHH
Confidence 467899888652110 012336788888999999876 55544434555432 345555555555543
No 129
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=21.07 E-value=2.4e+02 Score=20.61 Aligned_cols=81 Identities=9% Similarity=-0.033 Sum_probs=42.2
Q ss_pred CeEEEEeCChhhHHHHHHHHHHcCCceecCCcccCcccchhhhhcc-ccCCCceeeeecCCCCCCCC-CchHHHhhh--h
Q psy13427 128 GIVLFVGQSAQNSLLIEKTAQDCQEFAHTRFWRQGMFTNSEKLFRA-VTRLPDLVILTNTLTTVLEP-NPAIGEAAK--M 203 (268)
Q Consensus 128 g~ILfV~t~~~~~~~V~~~A~~~g~~~i~~rW~gG~LTN~~~~~~~-~~~~Pdlvivld~~~~~~~d-~~aI~EA~~--l 203 (268)
-+||+|.........+..+.+..+..+... ..+|....+.. ....||+|++ |... +..+ ...+++... -
T Consensus 21 ~~iLivdd~~~~~~~l~~~L~~~~~~~~v~-----~~~~~~~al~~l~~~~~dlii~-D~~l-~~~~g~~~~~~l~~~~~ 93 (150)
T 4e7p_A 21 MKVLVAEDQSMLRDAMCQLLTLQPDVESVL-----QAKNGQEAIQLLEKESVDIAIL-DVEM-PVKTGLEVLEWIRSEKL 93 (150)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTSTTEEEEE-----EESSHHHHHHHHTTSCCSEEEE-CSSC-SSSCHHHHHHHHHHTTC
T ss_pred cEEEEEcCCHHHHHHHHHHHHhCCCcEEEE-----EECCHHHHHHHhhccCCCEEEE-eCCC-CCCcHHHHHHHHHHhCC
Confidence 368889888888887777777665433221 22333322111 1345887765 4210 1112 223333332 3
Q ss_pred CCCccccccCCC
Q psy13427 204 CIPTVGIVDSNC 215 (268)
Q Consensus 204 ~IPtIalvDTn~ 215 (268)
++|+|.+.+...
T Consensus 94 ~~~ii~ls~~~~ 105 (150)
T 4e7p_A 94 ETKVVVVTTFKR 105 (150)
T ss_dssp SCEEEEEESCCC
T ss_pred CCeEEEEeCCCC
Confidence 688888776543
No 130
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1
Probab=20.97 E-value=1.2e+02 Score=24.57 Aligned_cols=75 Identities=12% Similarity=0.034 Sum_probs=37.9
Q ss_pred EEEEeCChhhHHHHHHHHHHcCCceecCCcccCcccchhhhhccccCCCceeeeecCCCCCCC------CCchHHHhhhh
Q psy13427 130 VLFVGQSAQNSLLIEKTAQDCQEFAHTRFWRQGMFTNSEKLFRAVTRLPDLVILTNTLTTVLE------PNPAIGEAAKM 203 (268)
Q Consensus 130 ILfV~t~~~~~~~V~~~A~~~g~~~i~~rW~gG~LTN~~~~~~~~~~~Pdlvivld~~~~~~~------d~~aI~EA~~l 203 (268)
|+++.+...+...+.+..++.|.....-++-.+. ..... ...+|.||+..-..++.. ...+++++ ..
T Consensus 4 i~iid~~~s~~~~~~~~l~~~G~~~~v~~~~~~~---~~~~~---~~~~dglil~gG~~~~~~~~~~~~~~~~i~~~-~~ 76 (195)
T 1qdl_B 4 TLIIDNYDSFVYNIAQIVGELGSYPIVIRNDEIS---IKGIE---RIDPDRLIISPGPGTPEKREDIGVSLDVIKYL-GK 76 (195)
T ss_dssp EEEEECSCSSHHHHHHHHHHTTCEEEEEETTTSC---HHHHH---HHCCSEEEECCCSSCTTSHHHHTTHHHHHHHH-TT
T ss_pred EEEEECCCchHHHHHHHHHhCCCEEEEEeCCCCC---HHHHh---hCCCCEEEECCCCCChhhhhhhhHHHHHHHHh-cC
Confidence 6777765555555666666667554321211111 11110 114788877531111111 12455664 57
Q ss_pred CCCccccc
Q psy13427 204 CIPTVGIV 211 (268)
Q Consensus 204 ~IPtIalv 211 (268)
++|+.|+|
T Consensus 77 ~~PvLGIC 84 (195)
T 1qdl_B 77 RTPILGVC 84 (195)
T ss_dssp TSCEEEET
T ss_pred CCcEEEEe
Confidence 99999998
No 131
>3i0z_A Putative tagatose-6-phosphate ketose/aldose isome; NP_344614.1, putative putative tagatose-6-phosphate ketose/A isomerase; HET: MSE; 1.70A {Streptococcus pneumoniae TIGR4}
Probab=20.81 E-value=79 Score=29.23 Aligned_cols=39 Identities=10% Similarity=0.049 Sum_probs=26.0
Q ss_pred CCCceeeeecCCCCCCCCCchHHHhhhh--CCCccccccCC
Q psy13427 176 RLPDLVILTNTLTTVLEPNPAIGEAAKM--CIPTVGIVDSN 214 (268)
Q Consensus 176 ~~Pdlvivld~~~~~~~d~~aI~EA~~l--~IPtIalvDTn 214 (268)
...|++|.+..-....+--.|++.|+.. |.++|+|++..
T Consensus 108 ~~~dl~i~iS~SG~T~e~~~al~~ak~~~~g~~~i~IT~~~ 148 (389)
T 3i0z_A 108 DVATVLVSFARSGNSPESLATVDLAKSLVDELYQVTITCAA 148 (389)
T ss_dssp TSEEEEEEEESSSCCHHHHHHHHHHHHHCSSEEEEEEESCT
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHhhcCCCcEEEEECCC
Confidence 5678888776311111123578888988 99999998653
No 132
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=20.77 E-value=1.9e+02 Score=24.68 Aligned_cols=131 Identities=10% Similarity=-0.027 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHHHHHh-------CCCeEEEEeC----ChhhHH---HHHHHHHHcCCceecCC-ccc--Ccccchhh
Q psy13427 107 DQSAELLRDALNFVAHIAY-------RDGIVLFVGQ----SAQNSL---LIEKTAQDCQEFAHTRF-WRQ--GMFTNSEK 169 (268)
Q Consensus 107 ~~T~~~L~~A~~~I~~i~~-------~~g~ILfV~t----~~~~~~---~V~~~A~~~g~~~i~~r-W~g--G~LTN~~~ 169 (268)
+.|.++..+|+.=+...-. +...|-++-. .+.+.. -+++.|+..|....... -.. +.......
T Consensus 16 ~~tr~rV~~aa~elgY~pn~~Ar~~~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~ 95 (342)
T 1jx6_A 16 PEQRNLTNALSEAVRAQPVPLSKPTQRPIKISVVYPGQQVSDYWVRNIASFEKRLYKLNINYQLNQVFTRPNADIKQQSL 95 (342)
T ss_dssp HHHHHHHHHHHHHHHSCCCCCSSCCSSCEEEEEEECCCSSCCHHHHHHHHHHHHHHHTTCCEEEEEEECCTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCccccccCCceEEEEEecCCcccHHHHHHHHHHHHHHHHcCCeEEEEecCCCCccCHHHHHH
Confidence 4577777777766654321 1124544432 344443 34566677774332110 000 11111111
Q ss_pred hhcc-ccCCCceeeeecCCCCCCCCCchHHHhhhhCCCccccccCCCC------CCceeeeccCCCCchhHHHHHHHHHH
Q psy13427 170 LFRA-VTRLPDLVILTNTLTTVLEPNPAIGEAAKMCIPTVGIVDSNCN------PNLITYPVPGNDDTPSAIQYYCQVFK 242 (268)
Q Consensus 170 ~~~~-~~~~Pdlvivld~~~~~~~d~~aI~EA~~l~IPtIalvDTn~~------p~~IdypIP~NddS~~SI~li~~lL~ 242 (268)
.... ..+.+|.||+.. +......++.++...+||+|.++|...+ ...+++.-+ |...+.......|.
T Consensus 96 ~i~~l~~~~vdgiIi~~---~~~~~~~~~~~~~~~~ip~V~~~~~~~~~~~~~~~~~~~~V~~---D~~~~g~~a~~~L~ 169 (342)
T 1jx6_A 96 SLMEALKSKSDYLIFTL---DTTRHRKFVEHVLDSTNTKLILQNITTPVREWDKHQPFLYVGF---DHAEGSRELATEFG 169 (342)
T ss_dssp HHHHHHHTTCSEEEECC---SSSTTHHHHHHHHHHCSCEEEEETCCSCBGGGTTSCCSEEEEC---CHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCEEEEeC---ChHhHHHHHHHHHHcCCCEEEEecCCCcccccccCCCceEEec---CcHHHHHHHHHHHH
Confidence 1111 235689988732 1122235788888889999999887532 122444322 34555555555554
Q ss_pred H
Q psy13427 243 T 243 (268)
Q Consensus 243 ~ 243 (268)
+
T Consensus 170 ~ 170 (342)
T 1jx6_A 170 K 170 (342)
T ss_dssp H
T ss_pred H
Confidence 4
No 133
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=20.62 E-value=1.3e+02 Score=25.97 Aligned_cols=127 Identities=14% Similarity=0.046 Sum_probs=67.0
Q ss_pred HHHHHHHHhCCCeEEEEeCChh-----hHHHHHHHHHHcCCceecCCcccCcccchh-hhhccccCCCceeeeecCCCCC
Q psy13427 117 LNFVAHIAYRDGIVLFVGQSAQ-----NSLLIEKTAQDCQEFAHTRFWRQGMFTNSE-KLFRAVTRLPDLVILTNTLTTV 190 (268)
Q Consensus 117 ~~~I~~i~~~~g~ILfV~t~~~-----~~~~V~~~A~~~g~~~i~~rW~gG~LTN~~-~~~~~~~~~Pdlvivld~~~~~ 190 (268)
+.++.++.-+.++|.++.+... ..+.+++.++..|...+...+. -++.. +....+....|++++..-....
T Consensus 130 l~l~~~l~P~~k~vgvi~~~~~~~s~~~~~~~~~~~~~~g~~~v~~~~~---~~~~~~~~~~~l~~~~d~i~~~~d~~~~ 206 (302)
T 3lkv_A 130 VELIKEILPNVKSIGVVYNPGEANAVSLMELLKLSAAKHGIKLVEATAL---KSADVQSATQAIAEKSDVIYALIDNTVA 206 (302)
T ss_dssp HHHHHHHSTTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTCEEEEEECS---SGGGHHHHHHHHHTTCSEEEECSCHHHH
T ss_pred HHHHHHhCCCCCEEEEEeCCCcccHHHHHHHHHHHHHHcCCEEEEEecC---ChHHHHHHHHhccCCeeEEEEeCCcchh
Confidence 3455555445678877765432 2345667777777665432221 12211 2122334556777654310000
Q ss_pred CCCCchHHHhhhhCCCccccccCCCC-CCceeeeccCCCCchhHHHHHHHHHHHHHHhhhhh
Q psy13427 191 LEPNPAIGEAAKMCIPTVGIVDSNCN-PNLITYPVPGNDDTPSAIQYYCQVFKTAILKGKKA 251 (268)
Q Consensus 191 ~~d~~aI~EA~~l~IPtIalvDTn~~-p~~IdypIP~NddS~~SI~li~~lL~~aIl~gk~~ 251 (268)
........-+...++|+++..+.... --...|-+ +...++...--++..|++|+..
T Consensus 207 ~~~~~i~~~~~~~~iPv~~~~~~~v~~G~l~~~~~-----~~~~~G~~aa~~a~~IL~G~~p 263 (302)
T 3lkv_A 207 SAIEGMIVAANQAKTPVFGAATSYVERGAIASLGF-----DYYQIGVQTADYVAAILEGKEP 263 (302)
T ss_dssp HTHHHHHHHHHHTTCCEEESSHHHHHTTCSEEEEC-----CHHHHHHHHHHHHHHHHTTCCG
T ss_pred hHHHHHHHHHhhcCCceeecccccccCCceEEEec-----CHHHHHHHHHHHHHHHHCcCCc
Confidence 11122345567789999998665321 12344443 4555666666677778888643
No 134
>4hn9_A Iron complex transport system substrate-binding P; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.85A {Eubacterium eligens}
Probab=20.47 E-value=1.8e+02 Score=25.51 Aligned_cols=36 Identities=25% Similarity=0.328 Sum_probs=24.1
Q ss_pred chhhhhccccCCCceeeeecCCCCCCCCCchHHHhhhhCCCcccc
Q psy13427 166 NSEKLFRAVTRLPDLVILTNTLTTVLEPNPAIGEAAKMCIPTVGI 210 (268)
Q Consensus 166 N~~~~~~~~~~~Pdlvivld~~~~~~~d~~aI~EA~~l~IPtIal 210 (268)
|...+ +.-.||+||... .....+..-.++||||+.+
T Consensus 108 n~E~i---~al~PDLIi~~~------~~~~~~~~L~~~gipvv~~ 143 (335)
T 4hn9_A 108 NTEAC---VAATPDVVFLPM------KLKKTADTLESLGIKAVVV 143 (335)
T ss_dssp CHHHH---HHTCCSEEEEEG------GGHHHHHHHHHTTCCEEEE
T ss_pred CHHHH---HhcCCCEEEEeC------cchhHHHHHHHcCCCEEEE
Confidence 55543 245799998854 1234566667789999876
No 135
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=20.44 E-value=2e+02 Score=28.64 Aligned_cols=106 Identities=12% Similarity=0.062 Sum_probs=64.0
Q ss_pred CCcccccCCeEEecHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCChhhHHHHHHHHHHcCCceecCC--cccCcccchhh
Q psy13427 92 PYIYGVRQGQIIFDLDQSAELLRDALNFVAHIAYRDGIVLFVGQSAQNSLLIEKTAQDCQEFAHTRF--WRQGMFTNSEK 169 (268)
Q Consensus 92 ~yIyg~R~gi~IInL~~T~~~L~~A~~~I~~i~~~~g~ILfV~t~~~~~~~V~~~A~~~g~~~i~~r--W~gG~LTN~~~ 169 (268)
.++||+=|..+-|+.+....+. +++..+ .+.++++..........+++++++.|... +| +.+.+ ....
T Consensus 523 ~v~f~~fN~~~Ki~p~~~~~W~----~IL~~v--P~S~L~Ll~~~~~~~~~l~~~~~~~gi~~--~r~~f~~~~--~~~~ 592 (723)
T 4gyw_A 523 AIVYCNFNQLYKIDPSTLQMWA----NILKRV--PNSVLWLLRFPAVGEPNIQQYAQNMGLPQ--NRIIFSPVA--PKEE 592 (723)
T ss_dssp SEEEECCSCGGGCCHHHHHHHH----HHHHHC--SSEEEEEEETTGGGHHHHHHHHHHTTCCG--GGEEEEECC--CHHH
T ss_pred CEEEEeCCccccCCHHHHHHHH----HHHHhC--CCCeEEEEeCcHHHHHHHHHHHHhcCCCc--CeEEECCCC--CHHH
Confidence 3788888877777766533322 233343 34444466666677778888888888542 22 22221 2222
Q ss_pred hhccccCCCceeeeecCCCCCCCCCchHHHhhhhCCCcccccc
Q psy13427 170 LFRAVTRLPDLVILTNTLTTVLEPNPAIGEAAKMCIPTVGIVD 212 (268)
Q Consensus 170 ~~~~~~~~Pdlvivld~~~~~~~d~~aI~EA~~l~IPtIalvD 212 (268)
.+ .....-| |++||. +-.-+..--||-.+|+|||.+.-
T Consensus 593 ~l-~~~~~~D--i~LDt~--p~~g~tT~~eal~~GvPvvt~~g 630 (723)
T 4gyw_A 593 HV-RRGQLAD--VCLDTP--LCNGHTTGMDVLWAGTPMVTMPG 630 (723)
T ss_dssp HH-HHGGGCS--EEECCS--SSCCSHHHHHHHHTTCCEEBCCC
T ss_pred HH-HHhCCCe--EEeCCC--CcCCHHHHHHHHHcCCCEEEccC
Confidence 11 1223334 568863 34557888999999999999863
Done!