RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13427
(268 letters)
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal,
ribosomal R ribosomal protein, eukaryotic ribosome,
RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB:
3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B
Length = 252
Score = 170 bits (432), Expect = 1e-52
Identities = 37/187 (19%), Positives = 73/187 (39%), Gaps = 11/187 (5%)
Query: 69 VKDMFDAKVHLGHKIGSLDERMKPYIYGVRQGQI-IFDLDQSAELLRDALNFVAHIAYRD 127
+ + A HLG + ++ +PY++ R + + ++ ++ E L A +A I
Sbjct: 14 AQLLLAANTHLGAR--NVQVHQEPYVFNARPDGVHVINVGKTWEKLVLAARIIAAIP-NP 70
Query: 128 GIVLFVGQSAQNSLLIEKTAQDCQEFAHTRFWRQGMFTNSEKLFRAVTRLPDLVILTNTL 187
V+ + + K A + G FTN + P LVI+T+
Sbjct: 71 EDVVAISSRTFGQRAVLKFAAHTGATPIAGRFTPGSFTNYITRS---FKEPRLVIVTDPR 127
Query: 188 TTVLEPNPAIGEAAKMCIPTVGIVDSNCNPNLITYPVPGNDDTPSAIQYYCQVFKTAILK 247
+ AI EA+ + IP + + D + + +P N+ +I + +L+
Sbjct: 128 SD----AQAIKEASYVNIPVIALTDLDSPSEFVDVAIPCNNRGKHSIGLIWYLLAREVLR 183
Query: 248 GKKAKQD 254
+ A D
Sbjct: 184 LRGALVD 190
>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum}
Length = 305
Score = 171 bits (434), Expect = 3e-52
Identities = 45/184 (24%), Positives = 74/184 (40%), Gaps = 11/184 (5%)
Query: 69 VKDMFDAKVHLGHKIGSLDERMKPYIYGVRQGQI-IFDLDQSAELLRDALNFVAHIAYRD 127
++ M A VHLG K + D +M+ Y+Y R I I +L ++ E L+ A + I
Sbjct: 19 IQMMLAADVHLGTK--NCDFQMERYVYKRRTDGIYIINLGKTWEKLQLAARVIVAIENPQ 76
Query: 128 GIVLFVGQSAQNSLLIEKTAQDCQEFAHTRFWRQGMFTNSEKLFRAVTRLPDLVILTNTL 187
I + + K AQ A G FTN + P L+ILT+
Sbjct: 77 DI-IVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTS---FSEPRLLILTDPR 132
Query: 188 TTVLEPNPAIGEAAKMCIPTVGIVDSNCNPNLITYPVPGNDDTPSAIQYYCQVFKTAILK 247
T + I E+A IPT+ D++ + +P N+ +I + +L+
Sbjct: 133 TD----HQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQ 188
Query: 248 GKKA 251
+
Sbjct: 189 MRGT 192
>2zkq_b 40S ribosomal protein SA; protein-RNA complex, 40S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 295
Score = 171 bits (433), Expect = 3e-52
Identities = 36/184 (19%), Positives = 72/184 (39%), Gaps = 11/184 (5%)
Query: 69 VKDMFDAKVHLGHKIGSLDERMKPYIYGVRQGQI-IFDLDQSAELLRDALNFVAHIAYRD 127
V A HLG +LD +M+ YIY + I I +L ++ E L A + I
Sbjct: 15 VLKFLAAGTHLGGT--NLDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIVAIENPA 72
Query: 128 GIVLFVGQSAQNSLLIEKTAQDCQEFAHTRFWRQGMFTNSEKLFRAVTRLPDLVILTNTL 187
+ + + K A + G FTN +A R P L+++T+
Sbjct: 73 DV-SVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQ---IQAAFREPRLLVVTDPR 128
Query: 188 TTVLEPNPAIGEAAKMCIPTVGIVDSNCNPNLITYPVPGNDDTPSAIQYYCQVFKTAILK 247
+ + EA+ + +PT+ + +++ + +P N+ ++ + +L+
Sbjct: 129 ----ADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVLR 184
Query: 248 GKKA 251
+
Sbjct: 185 MRGT 188
>3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein,
acetylation, cytoplasm, phosphorylation, polymorphism;
2.15A {Homo sapiens}
Length = 253
Score = 162 bits (411), Expect = 2e-49
Identities = 39/213 (18%), Positives = 77/213 (36%), Gaps = 12/213 (5%)
Query: 46 SQEPEVPNPLRYHDYFQVRNLVKVKDMFDAKVHLGHKIGSLDERMKPYIYGVRQGQI-IF 104
Q D Q++ V A HLG +LD +M+ YIY + I I
Sbjct: 26 FQGHMASGSSGALDVLQMKE-EDVLKFLAAGTHLGGT--NLDFQMEQYIYKRKSDGIYII 82
Query: 105 DLDQSAELLRDALNFVAHIAYRDGIVLFVGQSAQNSLLIEKTAQDCQEFAHTRFWRQGMF 164
+L ++ E L A + I + + + K A + G F
Sbjct: 83 NLKRTWEKLLLAARAIVAIENPADV-SVISSRNTGQRAVLKFAAATGATPIAGRFTPGTF 141
Query: 165 TNSEKLFRAVTRLPDLVILTNTLTTVLEPNPAIGEAAKMCIPTVGIVDSNCNPNLITYPV 224
TN +A R P L+++T+ + + EA+ + +PT+ + +++ + +
Sbjct: 142 TNQ---IQAAFREPRLLVVTDPRAD----HQPLTEASYVNLPTIALCNTDSPLRYVDIAI 194
Query: 225 PGNDDTPSAIQYYCQVFKTAILKGKKAKQDTLK 257
P N+ ++ + +L+ +
Sbjct: 195 PCNNKGAHSVGLMWWMLAREVLRMRGTISREHP 227
>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A
{Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A
Length = 208
Score = 156 bits (396), Expect = 1e-47
Identities = 40/190 (21%), Positives = 72/190 (37%), Gaps = 12/190 (6%)
Query: 66 LVKVKDMFDAKVHLGHKIGSLDERMKPYIYGVRQGQI-IFDLDQSAELLRDALNFVAHIA 124
LV D A VH+G + MK +I+ VRQ + + D+ + E +R A F++
Sbjct: 10 LVPPDDYLAAGVHIGTQ--IKTGDMKKFIFKVRQDGLYVLDIRKLDERIRVAAKFLSRYE 67
Query: 125 YRDGIVLFVGQSAQNSLLIEKTAQDCQEFAHTRFWRQGMFTNSEKLFRAVTRLPDLVILT 184
+L V ++ ++ + G TN + R P++V +
Sbjct: 68 PSK--ILLVAARQYAHKPVQMFSKVVGSDYIVGRFIPGTLTNPML---SEYREPEVVFVN 122
Query: 185 NTLTTVLEPNPAIGEAAKMCIPTVGIVDSNCNPNLITYPVPGNDDTPSAIQYYCQVFKTA 244
+ A+ EA + IP V + DSN + + +P N+ A+ +
Sbjct: 123 DPAIDKQ----AVSEATAVGIPVVALCDSNNSSADVDLVIPTNNKGRRALAIVYWLLARE 178
Query: 245 ILKGKKAKQD 254
I K +
Sbjct: 179 IAKIRGQDFT 188
>3bbn_B Ribosomal protein S2; small ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Length = 231
Score = 148 bits (375), Expect = 4e-44
Identities = 54/231 (23%), Positives = 92/231 (39%), Gaps = 53/231 (22%)
Query: 67 VKVKDMFDAKVHLGHKIGSLDERMKPYIYGVRQGQIIFDLDQSAELLRDALNFVAHIAYR 126
+ +++M +A VH GH + RM PYI +G I +L ++A L +A + V + R
Sbjct: 4 INLEEMMEAGVHFGHGTRKWNPRMSPYISAKCKGIHIINLTRTARFLSEACDLVFDASSR 63
Query: 127 DGIVLFVGQSAQNSLLIEKTAQDCQEFAHTRFWRQGMFTN-------------------- 166
L VG + + + + A + + W GM TN
Sbjct: 64 GKQFLIVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRMEQTA 123
Query: 167 -----------------SEKLFRAV------TRLPDLVILTNTLTTVLEPNP---AIGEA 200
L + T LPD+VI +++ A+ E
Sbjct: 124 GRLARLPKRDAAVVKRQLSHLQTYLGGIKYMTGLPDIVI-------IVDQQEEYTALREC 176
Query: 201 AKMCIPTVGIVDSNCNPNLITYPVPGNDDTPSAIQYYCQVFKTAILKGKKA 251
+ IPT+ ++D+NCNP+L +P NDD ++I+ AI +G+ +
Sbjct: 177 ITLGIPTICLIDTNCNPDLADISIPANDDAIASIRLILTKLVFAICEGRSS 227
>2vqe_B 30S ribosomal protein S2; tRNA-binding, rRNA-binding,
metal-binding, zinc-finger, translation; HET: TM2 PAR;
2.5A {Thermus thermophilus} SCOP: c.23.15.1 PDB: 1gix_E*
1hnw_B* 1hnx_B* 1hnz_B* 1hr0_B 1ibk_B* 1ibl_B* 1ibm_B
1j5e_B 1jgo_E* 1jgp_E* 1jgq_E* 1ml5_E* 1n32_B* 1n33_B*
1n34_B 1n36_B 1xmo_B* 1xmq_B* 1xnq_B* ...
Length = 256
Score = 146 bits (370), Expect = 4e-43
Identities = 61/247 (24%), Positives = 101/247 (40%), Gaps = 55/247 (22%)
Query: 67 VKVKDMFDAKVHLGHKIGSLDERMKPYIYGVRQGQIIFDLDQSAELLRDALNFVAHIAYR 126
+ VK++ +A VH GH+ + + YIY R G I DL ++ E L F+ +A R
Sbjct: 5 ITVKELLEAGVHFGHERKRWNPKFARYIYAERNGIHIIDLQKTMEELERTFRFIEDLAMR 64
Query: 127 DGIVLFVGQSAQNSLLIEKTAQDC-QEFAHTRFWRQGMFTN------------------- 166
G +LFVG Q ++ A+ + + R W GM TN
Sbjct: 65 GGTILFVGTKKQAQDIVRMEAERAGMPYVNQR-WLGGMLTNFKTISQRVHRLEELEALFA 123
Query: 167 ------------------SEKLFRAV------TRLPDLVILTNTLTTVLEPNP---AIGE 199
E+L + + RLPD + V++P A+ E
Sbjct: 124 SPEIEERPKKEQVRLKHELERLQKYLSGFRLLKRLPDAIF-------VVDPTKEAIAVRE 176
Query: 200 AAKMCIPTVGIVDSNCNPNLITYPVPGNDDTPSAIQYYCQVFKTAILKGKKAKQDTLKLL 259
A K+ IP + + D++ +P+L+ Y +PGNDD +IQ I++ + +
Sbjct: 177 ARKLFIPVIALADTDSDPDLVDYIIPGNDDAIRSIQLILSRAVDLIIQARGGVVEPSPSY 236
Query: 260 SEKQEVQ 266
+ QE +
Sbjct: 237 ALVQEAE 243
>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_B
Length = 241
Score = 144 bits (364), Expect = 2e-42
Identities = 29/184 (15%), Positives = 72/184 (39%), Gaps = 10/184 (5%)
Query: 67 VKVKDMFDAKVHLGHKIGSLDERMKPYIYGVRQGQI-IFDLDQSAELLRDALNFVAHIAY 125
+K + + H +L+ +MK YI I +++++ + ++ A +A + +
Sbjct: 8 DDIKRLLASNCHQATI--NLNNQMKRYISHKGVNGIHYINIEETWQKIKLAARVIAAVQH 65
Query: 126 RDGIVLFVGQSAQNSLLIEKTAQDCQEFAHTRFWRQGMFTNSEKLFRAVTRLPDLVILTN 185
+ +++ + I+ + + W G TN P ++I+T+
Sbjct: 66 PEDVMVVCSRIYGQRAAIKFAGYTHCKSTSSSRWTPGTLTN---YQTLKYEEPRVLIVTD 122
Query: 186 TLTTVLEPNPAIGEAAKMCIPTVGIVDSNCNPNLITYPVPGNDDTPSAIQYYCQVFKTAI 245
+ AI EA+ + IP + + DS+ + +P N+ + +I + +
Sbjct: 123 PRSD----FQAIKEASYVNIPVIALCDSDSPLAYVDVVIPCNNRSTESISMIYWMIAREV 178
Query: 246 LKGK 249
+
Sbjct: 179 KILR 182
>3r8n_B 30S ribosomal protein S2; protein biosynthesis, RNA, tRNA, transfer
RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia
coli} PDB: 2ykr_B 3fih_B* 2wwl_B 3oar_B 3oaq_B 3ofb_B
3ofa_B 3ofp_B 3ofx_B 3ofy_B 3ofo_B 3r8o_B 4a2i_B 3i1m_B
1vs7_B* 3e1a_B 3e1c_B 1vs5_B 3i1o_B 3i1q_B ...
Length = 218
Score = 142 bits (361), Expect = 4e-42
Identities = 61/225 (27%), Positives = 94/225 (41%), Gaps = 55/225 (24%)
Query: 72 MFDAKVHLGHKIGSLDERMKPYIYGVRQGQIIFDLDQSAELLRDALNFVAHIAYRDGIVL 131
M A VH GH+ + +MKP+I+G R I +L+++ + +AL + IA R G +L
Sbjct: 1 MLKAGVHFGHQTRYWNPKMKPFIFGARNKVHIINLEKTVPMFNEALAELNKIASRKGKIL 60
Query: 132 FVGQSAQNSLLIEKTAQDC-QEFAHTRFWRQGMFTN------------------------ 166
FVG S ++ A C Q F + R W GM TN
Sbjct: 61 FVGTKRAASEAVKDAALSCDQFFVNHR-WLGGMLTNWKTVRQSIKRLKDLETQSQDGTFD 119
Query: 167 -------------SEKLFRAV------TRLPDLVILTNTLTTVLEPNP---AIGEAAKMC 204
EKL ++ LPD + V++ + AI EA +
Sbjct: 120 KLTKKEALMRTRELEKLENSLGGIKDMGGLPDALF-------VIDADHEHIAIKEANNLG 172
Query: 205 IPTVGIVDSNCNPNLITYPVPGNDDTPSAIQYYCQVFKTAILKGK 249
IP IVD+N +P+ + + +PGNDD A+ Y + +G+
Sbjct: 173 IPVFAIVDTNSDPDGVDFVIPGNDDAIRAVTLYLGAVAATVREGR 217
>2fi1_A Hydrolase, haloacid dehalogenase-like family; structural genomics,
haloacid dehalogenase-like F PSI, protein structure
initiative; 1.40A {Streptococcus pneumoniae} SCOP:
c.108.1.3
Length = 190
Score = 31.0 bits (71), Expect = 0.22
Identities = 12/60 (20%), Positives = 18/60 (30%), Gaps = 10/60 (16%)
Query: 102 IIFDLD----QSAELLRDALNFV-AHIAY---RDGIVLFVGQSAQNSLLIEKTAQDCQEF 153
I+DL + E A A D + + S IE A + + F
Sbjct: 9 YIWDLGGTLLDNYETSTAAFVETLALYGITQDHDSVYQALKVSTPF--AIETFAPNLENF 66
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.1 bits (72), Expect = 0.23
Identities = 34/198 (17%), Positives = 59/198 (29%), Gaps = 66/198 (33%)
Query: 16 TQTHYLFKKL-----STV---------PNVDPLPSTSNTESKDTSQEPEVPNPLRYHDYF 61
+ T LF L V N L S TE + S + Y
Sbjct: 62 SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPS--------MMTRMYI 113
Query: 62 QVRN-LVKVKDMFDAKVHLGHKIGSLDERMKPYIYGVRQGQIIFDLDQSAELLRDALNFV 120
+ R+ L +F AK ++ R++PY+ L Q+ LR A N +
Sbjct: 114 EQRDRLYNDNQVF-AKYNV--------SRLQPYL----------KLRQALLELRPAKNVL 154
Query: 121 AHIAYRDGIVLFVGQSAQNSLLIEKTAQDC---QEFAHTRFWRQGMFTNSEKL-FRAVTR 176
G++ G++ + + FW L +
Sbjct: 155 ID-----GVLGS-GKTW----VALDVCLSYKVQCKMDFKIFW----------LNLKNCNS 194
Query: 177 LPDLVILTNTLTTVLEPN 194
++ + L ++PN
Sbjct: 195 PETVLEMLQKLLYQIDPN 212
Score = 31.7 bits (71), Expect = 0.24
Identities = 35/224 (15%), Positives = 66/224 (29%), Gaps = 58/224 (25%)
Query: 10 INSRLSTQTHYLFKKLST-----VPNVDPLPS-TSNTESKDTSQEPEVPNPLRYHDYFQ- 62
+N + + + L PN +SN + + S + E+ L+ Y
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246
Query: 63 ------VRNLVKVKDMFDAKVHLGHKIGSL----DERMKPYIYGVRQGQII-------FD 105
V+N K + F+ L KI L +++ ++ I
Sbjct: 247 LLVLLNVQN-AKAWNAFN----LSCKI--LLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299
Query: 106 LDQSAELLRDALNFVAHIAYRDGIVLFVGQSAQNSLLIEKTAQDCQEFAHT-RFWRQGMF 164
D+ LL L+ +D L N + A+ ++ T W+
Sbjct: 300 PDEVKSLLLKYLD----CRPQD---LPREVLTTNPRRLSIIAESIRDGLATWDNWKH--- 349
Query: 165 TNSEKLFRAV-------------TRLPDLVIL---TNTLTTVLE 192
N +KL + L + + T +L
Sbjct: 350 VNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLS 393
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.2 bits (70), Expect = 0.49
Identities = 45/265 (16%), Positives = 86/265 (32%), Gaps = 92/265 (34%)
Query: 19 HYLF----KKLSTVPNVDPLPSTSNTESKDTSQEPEVPNPLRYHDYFQVRNL--VKVKDM 72
LF + PN LP + +S + ++ VP+P+ + NL +V+D
Sbjct: 301 TVLFFIGVRCYEAYPNTS-LPPSILEDSLENNEG--VPSPM-----LSISNLTQEQVQDY 352
Query: 73 FDA---------KVHLGHKIG-----------SLD------ERMK-PYIYGVRQGQIIFD 105
+ +V + G SL + K P G+ Q +I F
Sbjct: 353 VNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPS--GLDQSRIPFS 410
Query: 106 ----------LDQSA----ELLRDALNFVAHIAYRDGIVLFVGQSAQNSLLI----EKTA 147
L ++ LL A + + ++ + + I
Sbjct: 411 ERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSF-----NAKDIQIPVYDTFDG 465
Query: 148 QDCQEFAHTRFWRQGMFTN-SEKLFRAVTRLP-DLVILTNTLTT-VLEPNPAIGEAAKMC 204
D + + + SE++ + RLP T T +L+ P G A+ +
Sbjct: 466 SDLRVLS----------GSISERIVDCIIRLPVKWETTTQFKATHILDFGP--GGASGLG 513
Query: 205 IPT--------VGIVDS---NCNPN 218
+ T V ++ + + NP+
Sbjct: 514 VLTHRNKDGTGVRVIVAGTLDINPD 538
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 1.6
Identities = 9/43 (20%), Positives = 13/43 (30%), Gaps = 16/43 (37%)
Query: 81 HKIGSLDERMKPYIYGVRQGQIIFDLDQSAELLRDALNFVAHI 123
+ L +K Y D SA L A+ A +
Sbjct: 20 QALKKLQASLKLYA------------DDSAPAL--AIK--ATM 46
>2ah5_A COG0546: predicted phosphatases; MCSG, structural genomics, hydrola
haloacid dehalogenase-like, PSI; 1.74A {Streptococcus
pneumoniae} SCOP: c.108.1.6
Length = 210
Score = 27.5 bits (62), Expect = 3.7
Identities = 14/90 (15%), Positives = 30/90 (33%), Gaps = 18/90 (20%)
Query: 90 MKPYIYGVRQGQIIFDLD----QSAELLRDALNFV-AHIAY----RDGIVLFVGQSAQNS 140
M I FDLD S+ + +A + + I F+G ++S
Sbjct: 1 MTSITA------IFFDLDGTLVDSSIGIHNAFTYTFKELGVPSPDAKTIRGFMGPPLESS 54
Query: 141 ---LLIEKTAQDCQEFAHTRFWRQGMFTNS 167
L + + + + + +G++
Sbjct: 55 FATCLSKDQISEAVQIYRSYYKAKGIYEAQ 84
>1nwa_A Peptide methionine sulfoxide reductase MSRA; oxidoreductase,
product complex, structural genomics, PSI, protein
structure initiative; 1.50A {Mycobacterium tuberculosis}
SCOP: d.58.28.1
Length = 203
Score = 26.8 bits (60), Expect = 6.9
Identities = 3/23 (13%), Positives = 8/23 (34%)
Query: 235 QYYCQVFKTAILKGKKAKQDTLK 257
Y C + ++ + L+
Sbjct: 172 GYTCHFVRPGWRLPRRTAESALR 194
>1xqa_A Glyoxalase/bleomycin resistance protein; dioxygenase, structural
GEN midwest center for structural genomics, MCSG; HET:
P6G; 1.80A {Bacillus cereus atcc 14579} SCOP: d.32.1.2
Length = 113
Score = 25.8 bits (57), Expect = 7.2
Identities = 6/55 (10%), Positives = 13/55 (23%)
Query: 105 DLDQSAELLRDALNFVAHIAYRDGIVLFVGQSAQNSLLIEKTAQDCQEFAHTRFW 159
D+ + E L + + L++ + H F
Sbjct: 13 DVVAAREFLEKYFGLTCSGTRGNAFAVMRDNDGFILTLMKGKEVQYPKTFHVGFP 67
>3hhd_A Fatty acid synthase; transferase, multienzyme, megasynthase, fatty
acid synthesis, acetylation, cytoplasm, fatty acid
biosynthesis, hydrolase; 2.15A {Homo sapiens} PDB:
2jfk_A* 2jfd_A
Length = 965
Score = 27.1 bits (61), Expect = 8.2
Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 5/35 (14%)
Query: 33 PLPSTSNTESKDTSQEPEVPNPLRYHDYFQVRNLV 67
STS E++ S + Y+ V NLV
Sbjct: 713 RWLSTSIPEAQWHSSLARTSSA-EYN----VNNLV 742
>3sd7_A Putative phosphatase; structural genomics, haloacid
dehalogenase-like hydrolase, H center for structural
genomics of infectious diseases; HET: PGE; 1.70A
{Clostridium difficile}
Length = 240
Score = 26.4 bits (59), Expect = 9.1
Identities = 7/48 (14%), Positives = 18/48 (37%), Gaps = 8/48 (16%)
Query: 102 IIFDLD----QSAELLRDALNFV-AHIAY---RDGIVLFVGQSAQNSL 141
++FDLD E + ++ + + + F+G ++
Sbjct: 32 VLFDLDGTLTDPKEGITKSIQYSLNSFGIKEDLENLDQFIGPPLHDTF 79
>3mc1_A Predicted phosphatase, HAD family; PSI2, NYSGXRC, structural
genomics, protein structure initiative; 1.93A
{Clostridium acetobutylicum}
Length = 226
Score = 26.4 bits (59), Expect = 9.7
Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 15/61 (24%)
Query: 90 MKPYIYGVRQGQIIFDLD----QSAELLRDALNFV-AHIAY----RDGIVLFVGQSAQNS 140
M Y Y ++FDLD SAE + ++ + + FVG + S
Sbjct: 1 MSLYNY------VLFDLDGTLTDSAEGITKSVKYSLNKFDIQVEDLSSLNKFVGPPLKTS 54
Query: 141 L 141
Sbjct: 55 F 55
>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding,
ferredoxin, NADH-binding, oxidoreductase; HET: FAD;
1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2
d.15.4.2
Length = 338
Score = 26.6 bits (59), Expect = 9.9
Identities = 7/35 (20%), Positives = 12/35 (34%)
Query: 93 YIYGVRQGQIIFDLDQSAELLRDALNFVAHIAYRD 127
++GV Q + L+Q L + F
Sbjct: 243 LVFGVTQDCDLVALEQLDALQQKLPWFEYRTVVAH 277
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.396
Gapped
Lambda K H
0.267 0.0591 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,859,531
Number of extensions: 219612
Number of successful extensions: 582
Number of sequences better than 10.0: 1
Number of HSP's gapped: 553
Number of HSP's successfully gapped: 26
Length of query: 268
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 176
Effective length of database: 4,133,061
Effective search space: 727418736
Effective search space used: 727418736
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.7 bits)