RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13427
(268 letters)
>d2uubb1 c.23.15.1 (B:7-240) Ribosomal protein S2 {Thermus
thermophilus [TaxId: 274]}
Length = 234
Score = 146 bits (370), Expect = 6e-44
Identities = 55/222 (24%), Positives = 89/222 (40%), Gaps = 39/222 (17%)
Query: 69 VKDMFDAKVHLGHKIGSLDERMKPYIYGVRQGQIIFDLDQSAELLRDALNFVAHIAYRDG 128
VK++ +A VH GH+ + + YIY R G I DL ++ E L F+ +A R G
Sbjct: 1 VKELLEAGVHFGHERKRWNPKFARYIYAERNGIHIIDLQKTMEELERTFRFIEDLAMRGG 60
Query: 129 IVLFVGQSAQNSLLIEKTAQDCQEFAHTRFWRQGMFTNS--------------------- 167
+LFVG Q ++ A+ + W GM TN
Sbjct: 61 TILFVGTKKQAQDIVRMEAERAGMPYVNQRWLGGMLTNFKTISQRVHRLEELEALFASPE 120
Query: 168 ---------EKLFRAVTRLPDL------VILTNTLTTVLEPNP---AIGEAAKMCIPTVG 209
+L + RL + V++P A+ EA K+ IP +
Sbjct: 121 IEERPKKEQVRLKHELERLQKYLSGFRLLKRLPDAIFVVDPTKEAIAVREARKLFIPVIA 180
Query: 210 IVDSNCNPNLITYPVPGNDDTPSAIQYYCQVFKTAILKGKKA 251
+ D++ +P+L+ Y +PGNDD +IQ I++ +
Sbjct: 181 LADTDSDPDLVDYIIPGNDDAIRSIQLILSRAVDLIIQARGG 222
>d2gy9b1 c.23.15.1 (B:8-225) Ribosomal protein S2 {Escherichia coli
[TaxId: 562]}
Length = 218
Score = 144 bits (364), Expect = 3e-43
Identities = 58/221 (26%), Positives = 90/221 (40%), Gaps = 47/221 (21%)
Query: 72 MFDAKVHLGHKIGSLDERMKPYIYGVRQGQIIFDLDQSAELLRDALNFVAHIAYRDGIVL 131
M A VH GH+ + +MKP+I+G R I +L+++ + +AL + IA R G +L
Sbjct: 1 MLKAGVHFGHQTRYWNPKMKPFIFGARNKVHIINLEKTVPMFNEALAELNKIASRKGKIL 60
Query: 132 FVGQSAQNSLLIEKTAQDCQEFAHTRFWRQGMFTNS------------------------ 167
FVG S ++ A C +F W GM TN
Sbjct: 61 FVGTKRAASEAVKDAALSCDQFFVNHRWLGGMLTNWKTVRQSIKRLKDLETQSQDGTFDK 120
Query: 168 -------------EKLFR------AVTRLPDLVILTNTLTTVLEPNPAIGEAAKMCIPTV 208
EKL + LPD + + + + AI EA + IP
Sbjct: 121 LTKKEALMRTRELEKLENSLGGIKDMGGLPDALFVID----ADHEHIAIKEANNLGIPVF 176
Query: 209 GIVDSNCNPNLITYPVPGNDDTPSAIQYYCQVFKTAILKGK 249
IVD+N +P+ + + +PGNDD A+ Y + +G+
Sbjct: 177 AIVDTNSDPDGVDFVIPGNDDAIRAVTLYLGAVAATVREGR 217
>d1vi6a_ c.23.15.1 (A:) Ribosomal protein S2 {Archaeon Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 193
Score = 138 bits (349), Expect = 3e-41
Identities = 40/190 (21%), Positives = 71/190 (37%), Gaps = 12/190 (6%)
Query: 66 LVKVKDMFDAKVHLGHKIGSLDERMKPYIYGVRQGQI-IFDLDQSAELLRDALNFVAHIA 124
LV D A VH+G + MK +I+ VRQ + + D+ + E +R A F++
Sbjct: 5 LVPPDDYLAAGVHIGTQ--IKTGDMKKFIFKVRQDGLYVLDIRKLDERIRVAAKFLSRYE 62
Query: 125 YRDGIVLFVGQSAQNSLLIEKTAQDCQEFAHTRFWRQGMFTNSEKLFRAVTRLPDLVILT 184
+L V ++ ++ + G TN R P++V +
Sbjct: 63 P--SKILLVAARQYAHKPVQMFSKVVGSDYIVGRFIPGTLTNPMLSE---YREPEVVFVN 117
Query: 185 NTLTTVLEPNPAIGEAAKMCIPTVGIVDSNCNPNLITYPVPGNDDTPSAIQYYCQVFKTA 244
+ A+ EA + IP V + DSN + + +P N+ A+ +
Sbjct: 118 DPA----IDKQAVSEATAVGIPVVALCDSNNSSADVDLVIPTNNKGRRALAIVYWLLARE 173
Query: 245 ILKGKKAKQD 254
I K +
Sbjct: 174 IAKIRGQDFT 183
>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 67
Score = 26.2 bits (58), Expect = 1.1
Identities = 11/50 (22%), Positives = 17/50 (34%), Gaps = 10/50 (20%)
Query: 227 NDDTPSAIQYYCQV----FKTAI-----LKGKKAKQDTLKLLSEKQEVQH 267
+ D P + C F + + K K+ LK LS + Q
Sbjct: 7 DPDLPGGGLHRCLACARYFIDSTNLKTHFRSKDHKKR-LKQLSVEPYSQE 55
>d1n62b2 d.133.1.1 (B:147-809) Carbon monoxide (CO) dehydrogenase
molybdoprotein {Oligotropha carboxidovorans, formerly
Pseudomonas carboxydovorans [TaxId: 40137]}
Length = 663
Score = 27.3 bits (59), Expect = 2.2
Identities = 3/16 (18%), Positives = 8/16 (50%)
Query: 216 NPNLITYPVPGNDDTP 231
+ + + +P +TP
Sbjct: 579 GASFMDFFLPTAVETP 594
>d1rm6a2 d.133.1.1 (A:134-769) 4-hydroxybenzoyl-CoA reductase alpha
subunit HrcA, C-terminal domain {Thauera aromatica
[TaxId: 59405]}
Length = 636
Score = 26.9 bits (58), Expect = 2.8
Identities = 5/16 (31%), Positives = 10/16 (62%)
Query: 216 NPNLITYPVPGNDDTP 231
+ N++ Y VP ++P
Sbjct: 555 HGNILDYRVPTIVESP 570
>d1t3qb2 d.133.1.1 (B:166-786) Quinoline 2-oxidoreductase large
subunit QorL {Pseudomonas putida [TaxId: 303]}
Length = 621
Score = 26.9 bits (58), Expect = 3.0
Identities = 5/16 (31%), Positives = 7/16 (43%)
Query: 216 NPNLITYPVPGNDDTP 231
L+ Y +P D P
Sbjct: 540 TTTLMDYLIPTTLDVP 555
>d1ffvb2 d.133.1.1 (B:147-803) Carbon monoxide (CO) dehydrogenase
molybdoprotein {Hydrogenophaga pseudoflava [TaxId:
47421]}
Length = 657
Score = 26.9 bits (58), Expect = 3.1
Identities = 5/16 (31%), Positives = 8/16 (50%)
Query: 216 NPNLITYPVPGNDDTP 231
L+ Y +P +TP
Sbjct: 573 GNTLMDYFLPTAVETP 588
>d1jrob2 d.133.1.1 (B:124-777) Xanthine dehydrogenase chain B,
C-terminal domain {Rhodobacter capsulatus [TaxId: 1061]}
Length = 654
Score = 26.8 bits (58), Expect = 3.4
Identities = 5/16 (31%), Positives = 6/16 (37%)
Query: 216 NPNLITYPVPGNDDTP 231
TY +P D P
Sbjct: 567 THAPSTYKIPAFSDRP 582
>d1v97a5 d.133.1.1 (A:695-1332) Xanthine oxidase, C-terminal domain
{Cow (Bos taurus) [TaxId: 9913]}
Length = 638
Score = 26.8 bits (58), Expect = 3.6
Identities = 4/19 (21%), Positives = 6/19 (31%)
Query: 216 NPNLITYPVPGNDDTPSAI 234
TY +P P+
Sbjct: 527 TRGPSTYKIPAFGSIPTEF 545
>d2fug61 e.19.1.2 (6:15-175) NAD-quinone oxidoreductase chain 6,
Nqo6 {Thermus thermophilus [TaxId: 274]}
Length = 161
Score = 26.0 bits (57), Expect = 3.7
Identities = 31/137 (22%), Positives = 48/137 (35%), Gaps = 29/137 (21%)
Query: 126 RDGIVL-----FVGQSAQNSLLIEKTAQDC--QEFAHTRFWRQGMFTNSEKLFRAVTRLP 178
R+GI+ V NSL C E + R + ++FRA R
Sbjct: 2 REGILFTTLEKLVAWGRSNSLWPATFGLACCAIEMMASTDARNDLARFGSEVFRASPRQA 61
Query: 179 DLVILTNTLTTVLE----------PNP----AIGEAAKMC-----IPTVGIVDSNCNPNL 219
D++I+ L+ + P+P ++G A V VDS ++
Sbjct: 62 DVMIVAGRLSKKMAPVMRRVWEQMPDPKWVISMGACASSGGMFNNYAIVQNVDSVVPVDV 121
Query: 220 ITYPVPGNDDTPSAIQY 236
VPG P A+ Y
Sbjct: 122 Y---VPGCPPRPEALIY 135
>d2vlqa1 a.28.2.1 (A:4-84) ImmE9 protein (Im9) {Escherichia coli
[TaxId: 562]}
Length = 81
Score = 24.3 bits (53), Expect = 5.9
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 218 NLITYPVPGNDDTPSAI 234
+LI YP G+DD+PS I
Sbjct: 48 DLIYYPKEGDDDSPSGI 64
>d1gxha_ a.28.2.1 (A:) ImmE8 (Im8) {Escherichia coli [TaxId: 562]}
Length = 85
Score = 24.3 bits (53), Expect = 6.1
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 218 NLITYPVPGNDDTPSAI 234
+LI YP ND +P A+
Sbjct: 50 DLIYYPEGNNDGSPEAV 66
>d1ayia_ a.28.2.1 (A:) ImmE7 protein (Im7) {Escherichia coli [TaxId:
562]}
Length = 86
Score = 24.3 bits (53), Expect = 6.2
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 218 NLITYPVPGNDDTPSAI 234
+LI YP DD+P I
Sbjct: 52 DLIYYPSDNRDDSPEGI 68
>d1vlba4 d.133.1.1 (A:311-907) Aldehyde oxidoreductase
{Desulfovibrio gigas [TaxId: 879]}
Length = 597
Score = 25.8 bits (55), Expect = 6.3
Identities = 4/25 (16%), Positives = 7/25 (28%)
Query: 210 IVDSNCNPNLITYPVPGNDDTPSAI 234
D + L+ P P +
Sbjct: 514 FEDIKKHATLVGAGFPFIKQIPDKL 538
>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 350
Score = 25.5 bits (55), Expect = 7.1
Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 7/62 (11%)
Query: 1 MIHPCLRLSINSRLSTQ---THYLFKKLS----TVPNVDPLPSTSNTESKDTSQEPEVPN 53
+ L + +RL+ H F +L +PN P+ N +++ S P +
Sbjct: 282 LCSRLLEYTPTARLTPLEACAHSFFDELRDPNVKLPNGRDTPALFNFTTQELSSNPPLAT 341
Query: 54 PL 55
L
Sbjct: 342 IL 343
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.135 0.396
Gapped
Lambda K H
0.267 0.0671 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 944,760
Number of extensions: 42090
Number of successful extensions: 118
Number of sequences better than 10.0: 1
Number of HSP's gapped: 113
Number of HSP's successfully gapped: 19
Length of query: 268
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 184
Effective length of database: 1,254,276
Effective search space: 230786784
Effective search space used: 230786784
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (23.9 bits)