BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13428
(67 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 50.1 bits (118), Expect = 3e-07, Method: Composition-based stats.
Identities = 21/33 (63%), Positives = 28/33 (84%)
Query: 7 KIYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYN 39
+I +L+ +V+GQE AKKVL+VAVYNHYKR+ N
Sbjct: 8 EIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRN 40
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 49.7 bits (117), Expect = 4e-07, Method: Composition-based stats.
Identities = 21/33 (63%), Positives = 28/33 (84%)
Query: 7 KIYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYN 39
+I +L+ +V+GQE AKKVL+VAVYNHYKR+ N
Sbjct: 8 EIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRN 40
>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx
Length = 376
Score = 44.3 bits (103), Expect = 2e-05, Method: Composition-based stats.
Identities = 19/26 (73%), Positives = 23/26 (88%)
Query: 12 LNKHVVGQEHAKKVLSVAVYNHYKRI 37
L+ +V+GQE AKKV SVAVYNHYKR+
Sbjct: 19 LDNYVIGQEQAKKVFSVAVYNHYKRL 44
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
Length = 442
Score = 33.5 bits (75), Expect = 0.028, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 26/34 (76%)
Query: 7 KIYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYNN 40
+I L+KH++GQ++AK+ +++A+ N ++R+ N
Sbjct: 7 EIVSELDKHIIGQDNAKRSVAIALRNRWRRMQLN 40
>pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
pdb|1HT2|E Chain E, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
Length = 449
Score = 33.5 bits (75), Expect = 0.028, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 26/34 (76%)
Query: 7 KIYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYNN 40
+I L+KH++GQ++AK+ +++A+ N ++R+ N
Sbjct: 14 EIVSELDKHIIGQDNAKRSVAIALRNRWRRMQLN 47
>pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1YYF|A Chain A, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
pdb|1YYF|B Chain B, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
Length = 443
Score = 33.5 bits (75), Expect = 0.029, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 26/34 (76%)
Query: 7 KIYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYNN 40
+I L+KH++GQ++AK+ +++A+ N ++R+ N
Sbjct: 8 EIVSELDKHIIGQDNAKRSVAIALRNRWRRMQLN 41
>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted
Hslu (h. Influenzae)
pdb|1OFH|B Chain B, Asymmetric Complex Between Hslv And I-domain Deleted
Hslu (h. Influenzae)
pdb|1OFH|C Chain C, Asymmetric Complex Between Hslv And I-domain Deleted
Hslu (h. Influenzae)
pdb|1OFI|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted
Hslu (H. Influenzae)
pdb|1OFI|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted
Hslu (H. Influenzae)
pdb|1OFI|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted
Hslu (H. Influenzae)
Length = 310
Score = 31.2 bits (69), Expect = 0.15, Method: Composition-based stats.
Identities = 10/31 (32%), Positives = 23/31 (74%)
Query: 7 KIYEYLNKHVVGQEHAKKVLSVAVYNHYKRI 37
+I L++H++GQ AK+ +++A+ N ++R+
Sbjct: 8 EIVSELDQHIIGQADAKRAVAIALRNRWRRM 38
>pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
pdb|1KYI|A Chain A, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|B Chain B, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|C Chain C, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|D Chain D, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|E Chain E, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|F Chain F, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|S Chain S, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|T Chain T, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|U Chain U, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|V Chain V, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|W Chain W, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|X Chain X, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
Length = 444
Score = 30.8 bits (68), Expect = 0.17, Method: Composition-based stats.
Identities = 10/31 (32%), Positives = 23/31 (74%)
Query: 7 KIYEYLNKHVVGQEHAKKVLSVAVYNHYKRI 37
+I L++H++GQ AK+ +++A+ N ++R+
Sbjct: 8 EIVSELDQHIIGQADAKRAVAIALRNRWRRM 38
>pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant
Length = 444
Score = 30.8 bits (68), Expect = 0.20, Method: Composition-based stats.
Identities = 10/30 (33%), Positives = 22/30 (73%)
Query: 7 KIYEYLNKHVVGQEHAKKVLSVAVYNHYKR 36
+I L++H++GQ AK+ +++A+ N ++R
Sbjct: 8 EIVSELDQHIIGQADAKRAVAIALRNRWRR 37
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,651,221
Number of Sequences: 62578
Number of extensions: 38686
Number of successful extensions: 92
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 83
Number of HSP's gapped (non-prelim): 9
length of query: 67
length of database: 14,973,337
effective HSP length: 38
effective length of query: 29
effective length of database: 12,595,373
effective search space: 365265817
effective search space used: 365265817
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)