BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13428
(67 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9JHS4|CLPX_MOUSE ATP-dependent Clp protease ATP-binding subunit clpX-like,
mitochondrial OS=Mus musculus GN=Clpx PE=1 SV=2
Length = 634
Score = 67.4 bits (163), Expect = 2e-11, Method: Composition-based stats.
Identities = 34/48 (70%), Positives = 39/48 (81%), Gaps = 1/48 (2%)
Query: 8 IYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYNNISSSPSQSQASAKTQ 55
IY YL+K+VVGQ AKKVLSVAVYNHYKRIYNNI ++ Q QA A+ Q
Sbjct: 173 IYNYLDKYVVGQSFAKKVLSVAVYNHYKRIYNNIPANLRQ-QAEAEKQ 219
>sp|Q5U2U0|CLPX_RAT ATP-dependent Clp protease ATP-binding subunit clpX-like,
mitochondrial OS=Rattus norvegicus GN=Clpx PE=2 SV=1
Length = 633
Score = 65.9 bits (159), Expect = 6e-11, Method: Composition-based stats.
Identities = 33/48 (68%), Positives = 38/48 (79%), Gaps = 1/48 (2%)
Query: 8 IYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYNNISSSPSQSQASAKTQ 55
IY YL+K+VVGQ AKKVLSVAVYNHYKRIYNNI ++ Q QA + Q
Sbjct: 172 IYNYLDKYVVGQSFAKKVLSVAVYNHYKRIYNNIPANLRQ-QAEVEKQ 218
>sp|O76031|CLPX_HUMAN ATP-dependent Clp protease ATP-binding subunit clpX-like,
mitochondrial OS=Homo sapiens GN=CLPX PE=1 SV=2
Length = 633
Score = 65.9 bits (159), Expect = 7e-11, Method: Composition-based stats.
Identities = 33/48 (68%), Positives = 38/48 (79%), Gaps = 1/48 (2%)
Query: 8 IYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYNNISSSPSQSQASAKTQ 55
IY YL+K+VVGQ AKKVLSVAVYNHYKRIYNNI ++ Q QA + Q
Sbjct: 172 IYNYLDKYVVGQSFAKKVLSVAVYNHYKRIYNNIPANLRQ-QAEVEKQ 218
>sp|Q5R7N3|CLPX_PONAB ATP-dependent Clp protease ATP-binding subunit clpX-like,
mitochondrial OS=Pongo abelii GN=CLPX PE=2 SV=1
Length = 633
Score = 65.5 bits (158), Expect = 9e-11, Method: Composition-based stats.
Identities = 33/48 (68%), Positives = 38/48 (79%), Gaps = 1/48 (2%)
Query: 8 IYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYNNISSSPSQSQASAKTQ 55
IY YL+K+VVGQ AKKVLSVAVYNHYKRIYNNI ++ Q QA + Q
Sbjct: 172 IYNYLDKYVVGQSFAKKVLSVAVYNHYKRIYNNIPANLRQ-QAEVEKQ 218
>sp|A4XHW1|CLPX_CALS8 ATP-dependent Clp protease ATP-binding subunit ClpX
OS=Caldicellulosiruptor saccharolyticus (strain ATCC
43494 / DSM 8903) GN=clpX PE=3 SV=1
Length = 433
Score = 57.8 bits (138), Expect = 2e-08, Method: Composition-based stats.
Identities = 27/37 (72%), Positives = 33/37 (89%), Gaps = 1/37 (2%)
Query: 3 LVNPK-IYEYLNKHVVGQEHAKKVLSVAVYNHYKRIY 38
L PK I E+L+++VVGQ+HAKK+LSVAVYNHYKRIY
Sbjct: 61 LPTPKEIKEFLDQYVVGQDHAKKILSVAVYNHYKRIY 97
>sp|C3LNM5|CLPX_VIBCM ATP-dependent Clp protease ATP-binding subunit ClpX OS=Vibrio
cholerae serotype O1 (strain M66-2) GN=clpX PE=3 SV=1
Length = 426
Score = 57.4 bits (137), Expect = 3e-08, Method: Composition-based stats.
Identities = 25/38 (65%), Positives = 33/38 (86%)
Query: 7 KIYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYNNISSS 44
KI E+L+ +V+GQEHAKKVL+VAVYNHYKR+ N ++S
Sbjct: 70 KIREHLDDYVIGQEHAKKVLAVAVYNHYKRLRNGDTTS 107
>sp|Q9KQS7|CLPX_VIBCH ATP-dependent Clp protease ATP-binding subunit ClpX OS=Vibrio
cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba
N16961) GN=clpX PE=3 SV=1
Length = 426
Score = 57.4 bits (137), Expect = 3e-08, Method: Composition-based stats.
Identities = 25/38 (65%), Positives = 33/38 (86%)
Query: 7 KIYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYNNISSS 44
KI E+L+ +V+GQEHAKKVL+VAVYNHYKR+ N ++S
Sbjct: 70 KIREHLDDYVIGQEHAKKVLAVAVYNHYKRLRNGDTTS 107
>sp|A5F6Z1|CLPX_VIBC3 ATP-dependent Clp protease ATP-binding subunit ClpX OS=Vibrio
cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 /
O395) GN=clpX PE=3 SV=1
Length = 426
Score = 57.4 bits (137), Expect = 3e-08, Method: Composition-based stats.
Identities = 25/38 (65%), Positives = 33/38 (86%)
Query: 7 KIYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYNNISSS 44
KI E+L+ +V+GQEHAKKVL+VAVYNHYKR+ N ++S
Sbjct: 70 KIREHLDDYVIGQEHAKKVLAVAVYNHYKRLRNGDTTS 107
>sp|B9MQ33|CLPX_CALBD ATP-dependent Clp protease ATP-binding subunit ClpX
OS=Caldicellulosiruptor bescii (strain ATCC BAA-1888 /
DSM 6725 / Z-1320) GN=clpX PE=3 SV=1
Length = 433
Score = 57.0 bits (136), Expect = 3e-08, Method: Composition-based stats.
Identities = 27/37 (72%), Positives = 33/37 (89%), Gaps = 1/37 (2%)
Query: 3 LVNPK-IYEYLNKHVVGQEHAKKVLSVAVYNHYKRIY 38
L PK I E+L+++VVGQ+HAKK+LSVAVYNHYKRIY
Sbjct: 61 LPTPKEIKEFLDQYVVGQDHAKKILSVAVYNHYKRIY 97
>sp|Q8G5R1|CLPX_BIFLO ATP-dependent Clp protease ATP-binding subunit ClpX
OS=Bifidobacterium longum (strain NCC 2705) GN=clpX PE=3
SV=2
Length = 472
Score = 57.0 bits (136), Expect = 3e-08, Method: Composition-based stats.
Identities = 23/41 (56%), Positives = 33/41 (80%)
Query: 7 KIYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYNNISSSPSQ 47
+I++YLN++V+GQE+AK+ LSVAVYNHYKR+ + S Q
Sbjct: 67 QIFDYLNRYVIGQENAKRALSVAVYNHYKRVNMELQESAEQ 107
>sp|Q03F27|CLPX_PEDPA ATP-dependent Clp protease ATP-binding subunit ClpX OS=Pediococcus
pentosaceus (strain ATCC 25745 / 183-1w) GN=clpX PE=3
SV=1
Length = 418
Score = 56.6 bits (135), Expect = 5e-08, Method: Composition-based stats.
Identities = 26/54 (48%), Positives = 37/54 (68%)
Query: 7 KIYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYNNISSSPSQSQASAKTQDISLM 60
+I +YLN++V+GQE AKK LSVAVYNHYKRI + + + + +ISL+
Sbjct: 67 EIVDYLNQYVIGQEEAKKTLSVAVYNHYKRINKMAETKADEDEPELQKSNISLI 120
>sp|B5YI39|CLPX_THEYD ATP-dependent Clp protease ATP-binding subunit ClpX
OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 /
DSM 11347 / YP87) GN=clpX PE=3 SV=1
Length = 409
Score = 56.6 bits (135), Expect = 5e-08, Method: Composition-based stats.
Identities = 25/41 (60%), Positives = 33/41 (80%)
Query: 7 KIYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYNNISSSPSQ 47
+I+++LN +V+GQE AKK+LSVAVYNHYKRI+ SS Q
Sbjct: 64 EIHKFLNDYVIGQERAKKILSVAVYNHYKRIFKGTSSDEIQ 104
>sp|Q7VP79|CLPX_HAEDU ATP-dependent Clp protease ATP-binding subunit ClpX OS=Haemophilus
ducreyi (strain 35000HP / ATCC 700724) GN=clpX PE=3 SV=1
Length = 418
Score = 56.2 bits (134), Expect = 6e-08, Method: Composition-based stats.
Identities = 24/36 (66%), Positives = 32/36 (88%)
Query: 7 KIYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYNNIS 42
+I+ +L+ +V+GQEHAKKVLSVAVYNHYKR+ N +S
Sbjct: 68 QIHAHLDDYVIGQEHAKKVLSVAVYNHYKRLRNALS 103
>sp|Q5PBC9|CLPX_ANAMM ATP-dependent Clp protease ATP-binding subunit ClpX OS=Anaplasma
marginale (strain St. Maries) GN=clpX PE=3 SV=1
Length = 405
Score = 56.2 bits (134), Expect = 6e-08, Method: Composition-based stats.
Identities = 23/35 (65%), Positives = 32/35 (91%)
Query: 6 PKIYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYNN 40
P+I + L+++V+GQEH+KKVLSVAVYNHYKR+ N+
Sbjct: 61 PEIKQVLDEYVIGQEHSKKVLSVAVYNHYKRLRNS 95
>sp|B9KHZ5|CLPX_ANAMF ATP-dependent Clp protease ATP-binding subunit ClpX OS=Anaplasma
marginale (strain Florida) GN=clpX PE=3 SV=1
Length = 405
Score = 56.2 bits (134), Expect = 6e-08, Method: Composition-based stats.
Identities = 23/35 (65%), Positives = 32/35 (91%)
Query: 6 PKIYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYNN 40
P+I + L+++V+GQEH+KKVLSVAVYNHYKR+ N+
Sbjct: 61 PEIKQVLDEYVIGQEHSKKVLSVAVYNHYKRLRNS 95
>sp|Q9WXZ3|CLPX_THEMA ATP-dependent Clp protease ATP-binding subunit ClpX OS=Thermotoga
maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM
10099) GN=clpX PE=3 SV=1
Length = 406
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/45 (53%), Positives = 36/45 (80%)
Query: 7 KIYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYNNISSSPSQSQAS 51
+I L+K+++GQE AKKVLSVAVYNHYKR+++N+ S+ + + S
Sbjct: 60 EIKAELDKYIIGQERAKKVLSVAVYNHYKRVFSNLDSNDVEIEKS 104
>sp|Q180E8|CLPX_CLOD6 ATP-dependent Clp protease ATP-binding subunit ClpX OS=Clostridium
difficile (strain 630) GN=clpX PE=3 SV=1
Length = 416
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 29/43 (67%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 3 LVNPK-IYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYNNISSS 44
L PK + E LN +V+GQE AKK LSVAVYNHYKRIY+ SSS
Sbjct: 60 LPKPKEMMEILNDYVIGQEKAKKALSVAVYNHYKRIYSKKSSS 102
>sp|B5FBZ9|CLPX_VIBFM ATP-dependent Clp protease ATP-binding subunit ClpX OS=Vibrio
fischeri (strain MJ11) GN=clpX PE=3 SV=1
Length = 428
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 23/32 (71%), Positives = 29/32 (90%)
Query: 8 IYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYN 39
I E+L+ +V+GQEHAKKVL+VAVYNHYKR+ N
Sbjct: 73 IREHLDDYVIGQEHAKKVLAVAVYNHYKRLRN 104
>sp|Q5E6Q4|CLPX_VIBF1 ATP-dependent Clp protease ATP-binding subunit ClpX OS=Vibrio
fischeri (strain ATCC 700601 / ES114) GN=clpX PE=3 SV=1
Length = 428
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 23/32 (71%), Positives = 29/32 (90%)
Query: 8 IYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYN 39
I E+L+ +V+GQEHAKKVL+VAVYNHYKR+ N
Sbjct: 73 IREHLDDYVIGQEHAKKVLAVAVYNHYKRLRN 104
>sp|Q97FT7|CLPX_CLOAB ATP-dependent Clp protease ATP-binding subunit ClpX OS=Clostridium
acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 /
LMG 5710 / VKM B-1787) GN=clpX PE=3 SV=1
Length = 432
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/38 (65%), Positives = 34/38 (89%)
Query: 7 KIYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYNNISSS 44
+I +YL+++VVGQE AKK LSVAVYNHYKRI +N+S++
Sbjct: 65 EIKDYLDQYVVGQEDAKKSLSVAVYNHYKRINSNLSNN 102
>sp|Q2JDQ7|CLPX_FRASC ATP-dependent Clp protease ATP-binding subunit ClpX OS=Frankia
sp. (strain CcI3) GN=clpX PE=3 SV=1
Length = 428
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 23/31 (74%), Positives = 28/31 (90%)
Query: 7 KIYEYLNKHVVGQEHAKKVLSVAVYNHYKRI 37
+IYE+L+ +VVGQE AKK LSVAVYNHYKR+
Sbjct: 66 EIYEFLDSYVVGQETAKKTLSVAVYNHYKRV 96
>sp|Q0RPH1|CLPX_FRAAA ATP-dependent Clp protease ATP-binding subunit ClpX OS=Frankia
alni (strain ACN14a) GN=clpX PE=3 SV=1
Length = 432
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 23/31 (74%), Positives = 28/31 (90%)
Query: 7 KIYEYLNKHVVGQEHAKKVLSVAVYNHYKRI 37
+IYE+L+ +VVGQE AKK LSVAVYNHYKR+
Sbjct: 66 EIYEFLDSYVVGQETAKKTLSVAVYNHYKRV 96
>sp|Q15R47|CLPX_PSEA6 ATP-dependent Clp protease ATP-binding subunit ClpX
OS=Pseudoalteromonas atlantica (strain T6c / ATCC
BAA-1087) GN=clpX PE=3 SV=1
Length = 425
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/38 (68%), Positives = 32/38 (84%), Gaps = 1/38 (2%)
Query: 3 LVNPK-IYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYN 39
L PK I+ +L+ +V+GQEHAKKVLSVAVYNHYKR+ N
Sbjct: 65 LPTPKEIHSHLDDYVIGQEHAKKVLSVAVYNHYKRLRN 102
>sp|B2A159|CLPX_NATTJ ATP-dependent Clp protease ATP-binding subunit ClpX
OS=Natranaerobius thermophilus (strain ATCC BAA-1301 /
DSM 18059 / JW/NM-WN-LF) GN=clpX PE=3 SV=1
Length = 420
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 23/33 (69%), Positives = 28/33 (84%)
Query: 7 KIYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYN 39
+IYE LN +++GQE AKK LSVAVYNHYKR+ N
Sbjct: 66 EIYEILNDYIIGQEEAKKALSVAVYNHYKRVNN 98
>sp|Q73M37|CLPX_TREDE ATP-dependent Clp protease ATP-binding subunit ClpX OS=Treponema
denticola (strain ATCC 35405 / CIP 103919 / DSM 14222)
GN=clpX PE=3 SV=1
Length = 415
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 23/33 (69%), Positives = 30/33 (90%)
Query: 7 KIYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYN 39
++ EYL+++V+GQE AK+VLSVAVYNHYKRI N
Sbjct: 66 ELKEYLDEYVIGQEQAKRVLSVAVYNHYKRIMN 98
>sp|B0C146|CLPX_ACAM1 ATP-dependent Clp protease ATP-binding subunit ClpX
OS=Acaryochloris marina (strain MBIC 11017) GN=clpX PE=3
SV=1
Length = 447
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 28/47 (59%), Positives = 34/47 (72%), Gaps = 8/47 (17%)
Query: 8 IYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYNNISSSPSQSQASAKT 54
I YL++HV+GQ+ AKKVLSVAVYNHYKR+ S SQASA +
Sbjct: 84 IKSYLDEHVIGQDEAKKVLSVAVYNHYKRL--------SISQASADS 122
>sp|A8L1X0|CLPX_FRASN ATP-dependent Clp protease ATP-binding subunit ClpX OS=Frankia
sp. (strain EAN1pec) GN=clpX PE=3 SV=1
Length = 430
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 23/31 (74%), Positives = 28/31 (90%)
Query: 7 KIYEYLNKHVVGQEHAKKVLSVAVYNHYKRI 37
+IYE+L+ +VVGQE AKK LSVAVYNHYKR+
Sbjct: 66 EIYEFLDGYVVGQEAAKKTLSVAVYNHYKRV 96
>sp|Q660R1|CLPX_BORGA ATP-dependent Clp protease ATP-binding subunit ClpX OS=Borrelia
garinii (strain PBi) GN=clpX PE=3 SV=2
Length = 430
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/39 (69%), Positives = 31/39 (79%), Gaps = 1/39 (2%)
Query: 3 LVNPK-IYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYNN 40
L PK + ++L+ HVVGQE AKKVLSVAVYNHYKRI N
Sbjct: 61 LPTPKQLKDHLDMHVVGQEDAKKVLSVAVYNHYKRILKN 99
>sp|Q9F316|CLPX_STRCO ATP-dependent Clp protease ATP-binding subunit ClpX
OS=Streptomyces coelicolor (strain ATCC BAA-471 / A3(2)
/ M145) GN=clpX PE=3 SV=1
Length = 428
Score = 53.5 bits (127), Expect = 3e-07, Method: Composition-based stats.
Identities = 23/31 (74%), Positives = 27/31 (87%)
Query: 7 KIYEYLNKHVVGQEHAKKVLSVAVYNHYKRI 37
+IYE+L +VVGQE AKK LSVAVYNHYKR+
Sbjct: 66 EIYEFLESYVVGQEAAKKALSVAVYNHYKRV 96
>sp|A0LSV2|CLPX_ACIC1 ATP-dependent Clp protease ATP-binding subunit ClpX OS=Acidothermus
cellulolyticus (strain ATCC 43068 / 11B) GN=clpX PE=3
SV=1
Length = 427
Score = 53.5 bits (127), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/54 (50%), Positives = 35/54 (64%)
Query: 7 KIYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYNNISSSPSQSQASAKTQDISLM 60
+I E+L+++V+GQE AKK LSVAVYNHYKRI SS S +I L+
Sbjct: 66 EICEFLDQYVIGQETAKKALSVAVYNHYKRIQVGGSSRSSNDSVELAKSNILLI 119
>sp|Q8YQX7|CLPX_NOSS1 ATP-dependent Clp protease ATP-binding subunit ClpX OS=Nostoc sp.
(strain PCC 7120 / UTEX 2576) GN=clpX PE=3 SV=1
Length = 445
Score = 53.5 bits (127), Expect = 4e-07, Method: Composition-based stats.
Identities = 27/50 (54%), Positives = 36/50 (72%), Gaps = 6/50 (12%)
Query: 7 KIYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYNNISSSPSQSQASAKTQD 56
+I +YL++HV+GQ+ AKKVLSVAVYNHYKR+ + QS+ S K D
Sbjct: 84 EIKKYLDEHVIGQDEAKKVLSVAVYNHYKRL------AILQSKGSGKNGD 127
>sp|B1L1D6|CLPX_CLOBM ATP-dependent Clp protease ATP-binding subunit ClpX OS=Clostridium
botulinum (strain Loch Maree / Type A3) GN=clpX PE=3
SV=1
Length = 429
Score = 53.5 bits (127), Expect = 4e-07, Method: Composition-based stats.
Identities = 25/45 (55%), Positives = 34/45 (75%)
Query: 7 KIYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYNNISSSPSQSQAS 51
+I YL+++V+GQE AKK LSVAVYNHYKRI +N ++ + Q S
Sbjct: 65 EIKTYLDQYVIGQEDAKKSLSVAVYNHYKRINSNTNNDDVELQKS 109
>sp|A7GIH1|CLPX_CLOBL ATP-dependent Clp protease ATP-binding subunit ClpX OS=Clostridium
botulinum (strain Langeland / NCTC 10281 / Type F)
GN=clpX PE=3 SV=1
Length = 429
Score = 53.5 bits (127), Expect = 4e-07, Method: Composition-based stats.
Identities = 25/45 (55%), Positives = 34/45 (75%)
Query: 7 KIYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYNNISSSPSQSQAS 51
+I YL+++V+GQE AKK LSVAVYNHYKRI +N ++ + Q S
Sbjct: 65 EIKTYLDQYVIGQEDAKKSLSVAVYNHYKRINSNTNNDDVELQKS 109
>sp|B1IND6|CLPX_CLOBK ATP-dependent Clp protease ATP-binding subunit ClpX OS=Clostridium
botulinum (strain Okra / Type B1) GN=clpX PE=3 SV=1
Length = 429
Score = 53.5 bits (127), Expect = 4e-07, Method: Composition-based stats.
Identities = 25/45 (55%), Positives = 34/45 (75%)
Query: 7 KIYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYNNISSSPSQSQAS 51
+I YL+++V+GQE AKK LSVAVYNHYKRI +N ++ + Q S
Sbjct: 65 EIKTYLDQYVIGQEDAKKSLSVAVYNHYKRINSNTNNDDVELQKS 109
>sp|C1FLA5|CLPX_CLOBJ ATP-dependent Clp protease ATP-binding subunit ClpX OS=Clostridium
botulinum (strain Kyoto / Type A2) GN=clpX PE=3 SV=1
Length = 429
Score = 53.5 bits (127), Expect = 4e-07, Method: Composition-based stats.
Identities = 25/45 (55%), Positives = 34/45 (75%)
Query: 7 KIYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYNNISSSPSQSQAS 51
+I YL+++V+GQE AKK LSVAVYNHYKRI +N ++ + Q S
Sbjct: 65 EIKTYLDQYVIGQEDAKKSLSVAVYNHYKRINSNTNNDDVELQKS 109
>sp|A5I6W0|CLPX_CLOBH ATP-dependent Clp protease ATP-binding subunit ClpX OS=Clostridium
botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type
A) GN=clpX PE=3 SV=1
Length = 429
Score = 53.5 bits (127), Expect = 4e-07, Method: Composition-based stats.
Identities = 25/45 (55%), Positives = 34/45 (75%)
Query: 7 KIYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYNNISSSPSQSQAS 51
+I YL+++V+GQE AKK LSVAVYNHYKRI +N ++ + Q S
Sbjct: 65 EIKTYLDQYVIGQEDAKKSLSVAVYNHYKRINSNTNNDDVELQKS 109
>sp|C3KU76|CLPX_CLOB6 ATP-dependent Clp protease ATP-binding subunit ClpX OS=Clostridium
botulinum (strain 657 / Type Ba4) GN=clpX PE=3 SV=1
Length = 429
Score = 53.5 bits (127), Expect = 4e-07, Method: Composition-based stats.
Identities = 25/45 (55%), Positives = 34/45 (75%)
Query: 7 KIYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYNNISSSPSQSQAS 51
+I YL+++V+GQE AKK LSVAVYNHYKRI +N ++ + Q S
Sbjct: 65 EIKTYLDQYVIGQEDAKKSLSVAVYNHYKRINSNTNNDDVELQKS 109
>sp|A7FYI1|CLPX_CLOB1 ATP-dependent Clp protease ATP-binding subunit ClpX OS=Clostridium
botulinum (strain ATCC 19397 / Type A) GN=clpX PE=3 SV=1
Length = 429
Score = 53.5 bits (127), Expect = 4e-07, Method: Composition-based stats.
Identities = 25/45 (55%), Positives = 34/45 (75%)
Query: 7 KIYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYNNISSSPSQSQAS 51
+I YL+++V+GQE AKK LSVAVYNHYKRI +N ++ + Q S
Sbjct: 65 EIKTYLDQYVIGQEDAKKSLSVAVYNHYKRINSNTNNDDVELQKS 109
>sp|Q2GJB5|CLPX_ANAPZ ATP-dependent Clp protease ATP-binding subunit ClpX OS=Anaplasma
phagocytophilum (strain HZ) GN=clpX PE=3 SV=1
Length = 415
Score = 53.5 bits (127), Expect = 4e-07, Method: Composition-based stats.
Identities = 23/34 (67%), Positives = 31/34 (91%)
Query: 7 KIYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYNN 40
+I E L+++V+GQEH+KKVLSVAVYNHYKR+ N+
Sbjct: 62 EIKEVLDEYVIGQEHSKKVLSVAVYNHYKRLRNS 95
>sp|Q3B5I8|CLPX_PELLD ATP-dependent Clp protease ATP-binding subunit ClpX OS=Pelodictyon
luteolum (strain DSM 273) GN=clpX PE=3 SV=1
Length = 441
Score = 53.5 bits (127), Expect = 4e-07, Method: Composition-based stats.
Identities = 26/36 (72%), Positives = 31/36 (86%), Gaps = 1/36 (2%)
Query: 3 LVNPK-IYEYLNKHVVGQEHAKKVLSVAVYNHYKRI 37
LV+PK I E LN++VVGQE AK+ L+VAVYNHYKRI
Sbjct: 82 LVSPKAILESLNQYVVGQERAKRSLAVAVYNHYKRI 117
>sp|Q7NDN9|CLPX_GLOVI ATP-dependent Clp protease ATP-binding subunit ClpX OS=Gloeobacter
violaceus (strain PCC 7421) GN=clpX PE=3 SV=1
Length = 437
Score = 53.1 bits (126), Expect = 4e-07, Method: Composition-based stats.
Identities = 22/38 (57%), Positives = 31/38 (81%)
Query: 7 KIYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYNNISSS 44
+I YL++HV+GQ+ AKK+LSVAVYNHYKR+ + + S
Sbjct: 81 EIKSYLDQHVIGQQEAKKILSVAVYNHYKRLSSKLEES 118
>sp|A4SDM4|CLPX_PROVI ATP-dependent Clp protease ATP-binding subunit ClpX
OS=Prosthecochloris vibrioformis (strain DSM 265)
GN=clpX PE=3 SV=1
Length = 438
Score = 53.1 bits (126), Expect = 5e-07, Method: Composition-based stats.
Identities = 26/36 (72%), Positives = 31/36 (86%), Gaps = 1/36 (2%)
Query: 3 LVNPK-IYEYLNKHVVGQEHAKKVLSVAVYNHYKRI 37
LV+PK + E L+++VVGQE AKK LSVAVYNHYKRI
Sbjct: 79 LVSPKALMESLDQYVVGQERAKKALSVAVYNHYKRI 114
>sp|Q820F8|CLPX_STRAW ATP-dependent Clp protease ATP-binding subunit ClpX
OS=Streptomyces avermitilis (strain ATCC 31267 / DSM
46492 / JCM 5070 / NCIMB 12804 / NRRL 8165 / MA-4680)
GN=clpX PE=3 SV=1
Length = 428
Score = 53.1 bits (126), Expect = 5e-07, Method: Composition-based stats.
Identities = 23/31 (74%), Positives = 27/31 (87%)
Query: 7 KIYEYLNKHVVGQEHAKKVLSVAVYNHYKRI 37
+IYE+L +VVGQE AKK LSVAVYNHYKR+
Sbjct: 66 EIYEFLEGYVVGQEAAKKALSVAVYNHYKRV 96
>sp|A1SME0|CLPX_NOCSJ ATP-dependent Clp protease ATP-binding subunit ClpX
OS=Nocardioides sp. (strain BAA-499 / JS614) GN=clpX
PE=3 SV=1
Length = 426
Score = 53.1 bits (126), Expect = 5e-07, Method: Composition-based stats.
Identities = 24/36 (66%), Positives = 30/36 (83%), Gaps = 1/36 (2%)
Query: 3 LVNPK-IYEYLNKHVVGQEHAKKVLSVAVYNHYKRI 37
L PK I+E+LN +V+GQE AKK L+VAVYNHYKR+
Sbjct: 61 LPKPKEIFEFLNSYVIGQEQAKKSLAVAVYNHYKRV 96
>sp|B2IT91|CLPX_NOSP7 ATP-dependent Clp protease ATP-binding subunit ClpX OS=Nostoc
punctiforme (strain ATCC 29133 / PCC 73102) GN=clpX PE=3
SV=1
Length = 446
Score = 52.8 bits (125), Expect = 6e-07, Method: Composition-based stats.
Identities = 26/47 (55%), Positives = 36/47 (76%), Gaps = 6/47 (12%)
Query: 7 KIYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYNNISSSPSQSQASAK 53
+I +YL++HV+GQ+ AKKVLSVAVYNHYKR+ + QS+A+ K
Sbjct: 84 EIKKYLDEHVIGQDEAKKVLSVAVYNHYKRL------AVIQSKATGK 124
>sp|A7MV82|CLPX_VIBHB ATP-dependent Clp protease ATP-binding subunit ClpX OS=Vibrio
harveyi (strain ATCC BAA-1116 / BB120) GN=clpX PE=3 SV=1
Length = 426
Score = 52.8 bits (125), Expect = 6e-07, Method: Composition-based stats.
Identities = 25/43 (58%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 3 LVNPK-IYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYNNISSS 44
L PK I E+L+ +V+GQ++AKKVL+VAVYNHYKR+ N ++S
Sbjct: 65 LPTPKQIREHLDDYVIGQDYAKKVLAVAVYNHYKRLRNGDTTS 107
>sp|B1VXA8|CLPX_STRGG ATP-dependent Clp protease ATP-binding subunit ClpX
OS=Streptomyces griseus subsp. griseus (strain JCM 4626
/ NBRC 13350) GN=clpX PE=3 SV=1
Length = 432
Score = 52.8 bits (125), Expect = 6e-07, Method: Composition-based stats.
Identities = 23/31 (74%), Positives = 27/31 (87%)
Query: 7 KIYEYLNKHVVGQEHAKKVLSVAVYNHYKRI 37
+IYE+L +VVGQE AKK LSVAVYNHYKR+
Sbjct: 66 EIYEFLEGYVVGQEPAKKALSVAVYNHYKRV 96
>sp|Q5X452|CLPX_LEGPA ATP-dependent Clp protease ATP-binding subunit ClpX OS=Legionella
pneumophila (strain Paris) GN=clpX PE=3 SV=1
Length = 424
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/36 (66%), Positives = 31/36 (86%), Gaps = 1/36 (2%)
Query: 3 LVNPK-IYEYLNKHVVGQEHAKKVLSVAVYNHYKRI 37
L PK I +L+++V+GQ+HAKKVLSVAVYNHYKR+
Sbjct: 63 LPTPKEISNFLDEYVIGQQHAKKVLSVAVYNHYKRL 98
>sp|Q5WVJ1|CLPX_LEGPL ATP-dependent Clp protease ATP-binding subunit ClpX OS=Legionella
pneumophila (strain Lens) GN=clpX PE=3 SV=1
Length = 424
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/36 (66%), Positives = 31/36 (86%), Gaps = 1/36 (2%)
Query: 3 LVNPK-IYEYLNKHVVGQEHAKKVLSVAVYNHYKRI 37
L PK I +L+++V+GQ+HAKKVLSVAVYNHYKR+
Sbjct: 63 LPTPKEISNFLDEYVIGQQHAKKVLSVAVYNHYKRL 98
>sp|A5ID16|CLPX_LEGPC ATP-dependent Clp protease ATP-binding subunit ClpX OS=Legionella
pneumophila (strain Corby) GN=clpX PE=3 SV=1
Length = 424
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/36 (66%), Positives = 31/36 (86%), Gaps = 1/36 (2%)
Query: 3 LVNPK-IYEYLNKHVVGQEHAKKVLSVAVYNHYKRI 37
L PK I +L+++V+GQ+HAKKVLSVAVYNHYKR+
Sbjct: 63 LPTPKEISNFLDEYVIGQQHAKKVLSVAVYNHYKRL 98
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.125 0.336
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,960,165
Number of Sequences: 539616
Number of extensions: 607936
Number of successful extensions: 2584
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1000
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1581
Number of HSP's gapped (non-prelim): 1004
length of query: 67
length of database: 191,569,459
effective HSP length: 39
effective length of query: 28
effective length of database: 170,524,435
effective search space: 4774684180
effective search space used: 4774684180
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)