Query psy13428
Match_columns 67
No_of_seqs 164 out of 1105
Neff 3.5
Searched_HMMs 46136
Date Fri Aug 16 19:13:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13428.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13428hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1219 ClpX ATP-dependent pro 99.9 4.7E-23 1E-27 159.5 1.4 55 2-60 49-103 (408)
2 KOG0745|consensus 99.8 4.3E-21 9.3E-26 152.8 2.8 38 2-39 133-170 (564)
3 COG1220 HslU ATP-dependent pro 99.5 4.2E-14 9.1E-19 110.8 4.0 45 2-46 3-47 (444)
4 PRK05342 clpX ATP-dependent pr 99.4 2.3E-13 4.9E-18 104.0 4.6 39 2-40 59-97 (412)
5 TIGR00382 clpX endopeptidase C 99.4 2.5E-13 5.4E-18 104.5 4.0 38 2-39 65-102 (413)
6 TIGR00390 hslU ATP-dependent p 99.3 7.6E-13 1.6E-17 103.7 4.3 40 3-42 1-40 (441)
7 PRK05201 hslU ATP-dependent pr 99.0 2.2E-10 4.7E-15 90.1 4.1 39 3-41 4-42 (443)
8 PRK11034 clpA ATP-dependent Cl 87.7 0.48 1.1E-05 39.5 2.7 30 6-35 450-479 (758)
9 CHL00095 clpC Clp protease ATP 87.0 0.6 1.3E-05 38.6 2.9 32 6-37 501-532 (821)
10 PF06309 Torsin: Torsin; Inte 86.4 1.4 3.1E-05 29.8 4.0 33 4-36 15-47 (127)
11 TIGR02880 cbbX_cfxQ probable R 83.9 1.8 4E-05 31.3 3.9 36 5-40 13-49 (284)
12 PF01078 Mg_chelatase: Magnesi 80.4 1 2.2E-05 32.5 1.5 18 16-33 5-22 (206)
13 TIGR02639 ClpA ATP-dependent C 79.0 1.8 4E-05 35.3 2.6 26 6-31 446-471 (731)
14 CHL00081 chlI Mg-protoporyphyr 69.5 2 4.4E-05 32.9 0.7 18 16-33 19-36 (350)
15 TIGR03345 VI_ClpV1 type VI sec 68.2 3.9 8.4E-05 34.5 2.1 28 5-32 557-584 (852)
16 COG0606 Predicted ATPase with 56.2 6.6 0.00014 32.2 1.4 17 15-31 180-196 (490)
17 COG0542 clpA ATP-binding subun 51.2 14 0.00029 31.9 2.5 26 6-31 483-508 (786)
18 KOG1051|consensus 49.5 17 0.00038 31.7 3.0 27 6-32 554-580 (898)
19 COG1223 Predicted ATPase (AAA+ 44.5 13 0.00029 29.5 1.4 16 15-30 122-137 (368)
20 PF08700 Vps51: Vps51/Vps67; 43.2 52 0.0011 19.2 3.6 36 4-39 20-55 (87)
21 KOG2170|consensus 43.1 31 0.00067 27.3 3.2 30 7-36 75-104 (344)
22 cd03734 SOCS_CIS1 SOCS (suppre 40.7 21 0.00046 19.9 1.5 14 2-15 24-37 (41)
23 cd03738 SOCS_SOCS4 SOCS (suppr 40.3 20 0.00044 21.5 1.5 18 2-19 26-43 (56)
24 PF13654 AAA_32: AAA domain; P 40.1 9.5 0.00021 30.6 0.0 17 14-30 8-24 (509)
25 cd03736 SOCS_SOCS2 SOCS (suppr 40.1 22 0.00048 19.6 1.5 15 2-16 24-38 (41)
26 COG2255 RuvB Holliday junction 39.1 18 0.0004 28.5 1.4 22 11-33 24-45 (332)
27 cd03735 SOCS_SOCS1 SOCS (suppr 38.3 24 0.00052 20.0 1.5 14 2-15 26-39 (43)
28 TIGR02030 BchI-ChlI magnesium 37.7 19 0.0004 27.4 1.2 18 15-32 5-22 (337)
29 TIGR03346 chaperone_ClpB ATP-d 37.7 34 0.00074 28.7 2.9 27 7-33 558-584 (852)
30 PF09702 Cas_Csa5: CRISPR-asso 36.0 47 0.001 22.3 2.8 30 2-31 72-101 (105)
31 PRK13407 bchI magnesium chelat 32.6 26 0.00057 26.6 1.4 16 15-30 9-24 (334)
32 cd03740 SOCS_SOCS6 SOCS (suppr 32.0 33 0.00071 18.9 1.4 14 2-15 26-39 (41)
33 TIGR02442 Cob-chelat-sub cobal 32.0 25 0.00055 28.5 1.2 19 15-33 5-23 (633)
34 COG1738 yhhQ Uncharacterized m 30.4 69 0.0015 23.6 3.2 34 2-40 122-155 (233)
35 cd03717 SOCS_SOCS_like SOCS (s 30.1 37 0.00081 18.2 1.4 14 2-15 26-39 (39)
36 PRK07471 DNA polymerase III su 29.8 30 0.00064 26.4 1.2 25 3-32 13-37 (365)
37 PF12630 Pox_polyA_pol_N: Poxv 29.6 45 0.00097 22.6 1.9 23 3-25 60-82 (108)
38 cd03742 SOCS_Rab40 SOCS (suppr 28.8 43 0.00093 19.0 1.5 17 2-18 26-42 (43)
39 PRK00665 petG cytochrome b6-f 28.7 42 0.00092 18.9 1.4 11 26-36 21-31 (37)
40 cd03737 SOCS_SOCS3 SOCS (suppr 28.6 32 0.00069 19.3 0.9 11 5-15 28-38 (42)
41 CHL00181 cbbX CbbX; Provisiona 27.0 1.5E+02 0.0034 21.6 4.5 21 6-26 15-35 (287)
42 PF12875 DUF3826: Protein of u 25.7 1.2E+02 0.0025 22.3 3.6 30 6-40 11-42 (188)
43 PRK10865 protein disaggregatio 25.4 58 0.0013 27.6 2.3 27 6-32 560-586 (857)
44 cd03739 SOCS_SOCS5 SOCS (suppr 25.1 52 0.0011 19.8 1.4 18 2-19 26-43 (57)
45 CHL00008 petG cytochrome b6/f 24.4 59 0.0013 18.3 1.5 12 26-37 21-32 (37)
46 PF13865 FoP_duplication: C-te 22.4 1.9E+02 0.0041 17.4 3.9 29 3-34 40-68 (74)
47 PF10638 Sfi1_C: Spindle body 21.8 96 0.0021 20.9 2.4 27 14-40 21-47 (108)
48 PF11823 DUF3343: Protein of u 21.5 26 0.00057 20.5 -0.3 9 1-9 30-38 (73)
49 smart00253 SOCS suppressors of 21.2 69 0.0015 17.4 1.4 14 2-15 30-43 (43)
50 PF10309 DUF2414: Protein of u 21.1 80 0.0017 19.0 1.8 14 3-16 16-29 (62)
51 PF13867 SAP30_Sin3_bdg: Sin3 20.3 1.8E+02 0.004 16.4 3.2 19 20-38 20-38 (53)
No 1
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=4.7e-23 Score=159.47 Aligned_cols=55 Identities=44% Similarity=0.622 Sum_probs=49.5
Q ss_pred CCChHHHHHHHhhhhccchhhhHHHHHHHHHHHHHhhhccCCCCccccccccccccccc
Q psy13428 2 ILVNPKIYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYNNISSSPSQSQASAKTQDISLM 60 (67)
Q Consensus 2 l~tPkeI~~~LD~yVIGQe~AKKvLaVAVyNHYkRi~~~~~~q~~~~~~~~~~~~~~~~ 60 (67)
+|||+||+++||+|||||++|||+|||||||||+|++... ..+.+|+.|||++|-
T Consensus 49 lPtP~eik~~Ld~YVIGQe~AKKvLsVAVYNHYKRl~~~~----~~~dvEL~KSNILLi 103 (408)
T COG1219 49 LPTPKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNNKE----DNDDVELSKSNILLI 103 (408)
T ss_pred CCChHHHHHHhhhheecchhhhceeeeeehhHHHHHhccC----CCCceeeeeccEEEE
Confidence 7999999999999999999999999999999999999776 222399999998873
No 2
>KOG0745|consensus
Probab=99.82 E-value=4.3e-21 Score=152.81 Aligned_cols=38 Identities=71% Similarity=0.992 Sum_probs=37.1
Q ss_pred CCChHHHHHHHhhhhccchhhhHHHHHHHHHHHHHhhh
Q psy13428 2 ILVNPKIYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYN 39 (67)
Q Consensus 2 l~tPkeI~~~LD~yVIGQe~AKKvLaVAVyNHYkRi~~ 39 (67)
+|||+||++|||+|||||++|||+|||||||||+||.+
T Consensus 133 ~P~PkeI~~~Ldk~VVGQe~AKKvLsVAVYnHYkRI~h 170 (564)
T KOG0745|consen 133 PPTPKEICEYLDKFVVGQEKAKKVLSVAVYNHYKRIYH 170 (564)
T ss_pred CCChHHHHHHhhhheechhhhhheeeehhhHHHHHHhc
Confidence 69999999999999999999999999999999999987
No 3
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=4.2e-14 Score=110.82 Aligned_cols=45 Identities=22% Similarity=0.385 Sum_probs=41.7
Q ss_pred CCChHHHHHHHhhhhccchhhhHHHHHHHHHHHHHhhhccCCCCc
Q psy13428 2 ILVNPKIYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYNNISSSPS 46 (67)
Q Consensus 2 l~tPkeI~~~LD~yVIGQe~AKKvLaVAVyNHYkRi~~~~~~q~~ 46 (67)
-+||+||+++||+|||||+.|||++|+|++|+|+|.+.+.+++.+
T Consensus 3 ~~tPreIV~eLd~yIIGQ~~AKkaVAIALRNR~RR~qL~~~lr~E 47 (444)
T COG1220 3 EMTPREIVSELDRYIIGQDEAKKAVAIALRNRWRRMQLEEELRDE 47 (444)
T ss_pred CCCHHHHHHHHHhHhcCcHHHHHHHHHHHHHHHHHHhcCHHHhhc
Confidence 479999999999999999999999999999999999998877743
No 4
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.40 E-value=2.3e-13 Score=103.98 Aligned_cols=39 Identities=54% Similarity=0.760 Sum_probs=37.4
Q ss_pred CCChHHHHHHHhhhhccchhhhHHHHHHHHHHHHHhhhc
Q psy13428 2 ILVNPKIYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYNN 40 (67)
Q Consensus 2 l~tPkeI~~~LD~yVIGQe~AKKvLaVAVyNHYkRi~~~ 40 (67)
+|+|++|+++||+|||||+.||++|+|||||||+|+...
T Consensus 59 ~~~p~~i~~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~ 97 (412)
T PRK05342 59 LPTPKEIKAHLDQYVIGQERAKKVLSVAVYNHYKRLRHG 97 (412)
T ss_pred CCCHHHHHHHHhhHeeChHHHHHHHHHHHHHHHHhhhcc
Confidence 689999999999999999999999999999999999764
No 5
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.39 E-value=2.5e-13 Score=104.46 Aligned_cols=38 Identities=55% Similarity=0.745 Sum_probs=36.7
Q ss_pred CCChHHHHHHHhhhhccchhhhHHHHHHHHHHHHHhhh
Q psy13428 2 ILVNPKIYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYN 39 (67)
Q Consensus 2 l~tPkeI~~~LD~yVIGQe~AKKvLaVAVyNHYkRi~~ 39 (67)
+|+|++|+++||+|||||++||+++++||||||+|++.
T Consensus 65 ~~~p~~i~~~L~~~ViGQe~A~~~l~~av~~h~~~~~~ 102 (413)
T TIGR00382 65 LPTPKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNF 102 (413)
T ss_pred CCCHHHHHHHhcceecCHHHHHHHHHHHHHHHHhhhcc
Confidence 68999999999999999999999999999999999976
No 6
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.34 E-value=7.6e-13 Score=103.74 Aligned_cols=40 Identities=33% Similarity=0.497 Sum_probs=37.3
Q ss_pred CChHHHHHHHhhhhccchhhhHHHHHHHHHHHHHhhhccC
Q psy13428 3 LVNPKIYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYNNIS 42 (67)
Q Consensus 3 ~tPkeI~~~LD~yVIGQe~AKKvLaVAVyNHYkRi~~~~~ 42 (67)
+||++|+++||+|||||++||++++||+||||+|.+....
T Consensus 1 ltP~~I~~~Ld~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~ 40 (441)
T TIGR00390 1 MTPREIVAELDKYIIGQDNAKKSVAIALRNRYRRSQLNEE 40 (441)
T ss_pred CCHHHHHHHHhhhccCHHHHHHHHHHHHHhhhhhhccccc
Confidence 5999999999999999999999999999999999986543
No 7
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.03 E-value=2.2e-10 Score=90.10 Aligned_cols=39 Identities=28% Similarity=0.484 Sum_probs=36.5
Q ss_pred CChHHHHHHHhhhhccchhhhHHHHHHHHHHHHHhhhcc
Q psy13428 3 LVNPKIYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYNNI 41 (67)
Q Consensus 3 ~tPkeI~~~LD~yVIGQe~AKKvLaVAVyNHYkRi~~~~ 41 (67)
++|++|+++||+|||||++||+++++|+||||+|.....
T Consensus 4 ~~p~~I~~~Ld~~IiGQe~AkkalavAl~~~~~r~~l~~ 42 (443)
T PRK05201 4 LTPREIVSELDKYIIGQDDAKRAVAIALRNRWRRMQLPE 42 (443)
T ss_pred CCHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHhcCCc
Confidence 699999999999999999999999999999999986553
No 8
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=87.67 E-value=0.48 Score=39.55 Aligned_cols=30 Identities=23% Similarity=0.241 Sum_probs=26.1
Q ss_pred HHHHHHHhhhhccchhhhHHHHHHHHHHHH
Q psy13428 6 PKIYEYLNKHVVGQEHAKKVLSVAVYNHYK 35 (67)
Q Consensus 6 keI~~~LD~yVIGQe~AKKvLaVAVyNHYk 35 (67)
..+.+.|.+.||||+.|++.|+.+|..+..
T Consensus 450 ~~l~~~L~~~ViGQ~~ai~~l~~~i~~~~~ 479 (758)
T PRK11034 450 KNLGDRLKMLVFGQDKAIEALTEAIKMSRA 479 (758)
T ss_pred HHHHHHhcceEeCcHHHHHHHHHHHHHHhc
Confidence 467889999999999999999999987654
No 9
>CHL00095 clpC Clp protease ATP binding subunit
Probab=87.02 E-value=0.6 Score=38.63 Aligned_cols=32 Identities=25% Similarity=0.317 Sum_probs=27.7
Q ss_pred HHHHHHHhhhhccchhhhHHHHHHHHHHHHHh
Q psy13428 6 PKIYEYLNKHVVGQEHAKKVLSVAVYNHYKRI 37 (67)
Q Consensus 6 keI~~~LD~yVIGQe~AKKvLaVAVyNHYkRi 37 (67)
..+.+.|.+.|+||+.|.+.++-|++.+...+
T Consensus 501 ~~l~~~L~~~v~GQ~~ai~~l~~~i~~~~~gl 532 (821)
T CHL00095 501 LHMEETLHKRIIGQDEAVVAVSKAIRRARVGL 532 (821)
T ss_pred HHHHHHhcCcCcChHHHHHHHHHHHHHHhhcc
Confidence 46889999999999999999999998776544
No 10
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=86.37 E-value=1.4 Score=29.85 Aligned_cols=33 Identities=21% Similarity=0.248 Sum_probs=29.0
Q ss_pred ChHHHHHHHhhhhccchhhhHHHHHHHHHHHHH
Q psy13428 4 VNPKIYEYLNKHVVGQEHAKKVLSVAVYNHYKR 36 (67)
Q Consensus 4 tPkeI~~~LD~yVIGQe~AKKvLaVAVyNHYkR 36 (67)
....+...|++.+.||+-|++++.=||..|...
T Consensus 15 ~~~~L~~~L~~~l~GQhla~~~v~~ai~~~l~~ 47 (127)
T PF06309_consen 15 NITGLEKDLQRNLFGQHLAVEVVVNAIKGHLAN 47 (127)
T ss_pred CHHHHHHHHHHHccCcHHHHHHHHHHHHHHHcC
Confidence 456788999999999999999999999999743
No 11
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=83.91 E-value=1.8 Score=31.34 Aligned_cols=36 Identities=14% Similarity=0.314 Sum_probs=28.3
Q ss_pred hHHHHHHHhhhhccchhhhHHH-HHHHHHHHHHhhhc
Q psy13428 5 NPKIYEYLNKHVVGQEHAKKVL-SVAVYNHYKRIYNN 40 (67)
Q Consensus 5 PkeI~~~LD~yVIGQe~AKKvL-aVAVyNHYkRi~~~ 40 (67)
=+|+.+.||+.+||.+.+|+.+ .+..+-.+.+++..
T Consensus 13 ~~~~~~~l~~~l~Gl~~vk~~i~e~~~~~~~~~~r~~ 49 (284)
T TIGR02880 13 ITEVLDQLDRELIGLKPVKTRIREIAALLLVERLRQR 49 (284)
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3689999999999999999987 55566666666543
No 12
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=80.42 E-value=1 Score=32.52 Aligned_cols=18 Identities=44% Similarity=0.645 Sum_probs=16.0
Q ss_pred hccchhhhHHHHHHHHHH
Q psy13428 16 VVGQEHAKKVLSVAVYNH 33 (67)
Q Consensus 16 VIGQe~AKKvLaVAVyNH 33 (67)
|+||+.||++|-+|.-..
T Consensus 5 I~GQe~aKrAL~iAAaG~ 22 (206)
T PF01078_consen 5 IVGQEEAKRALEIAAAGG 22 (206)
T ss_dssp SSSTHHHHHHHHHHHHCC
T ss_pred hcCcHHHHHHHHHHHcCC
Confidence 899999999999988764
No 13
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=79.05 E-value=1.8 Score=35.31 Aligned_cols=26 Identities=19% Similarity=0.317 Sum_probs=22.6
Q ss_pred HHHHHHHhhhhccchhhhHHHHHHHH
Q psy13428 6 PKIYEYLNKHVVGQEHAKKVLSVAVY 31 (67)
Q Consensus 6 keI~~~LD~yVIGQe~AKKvLaVAVy 31 (67)
..+.+.|++.|+||+.|++.++-++.
T Consensus 446 ~~l~~~l~~~v~GQ~~ai~~l~~~i~ 471 (731)
T TIGR02639 446 KNLEKNLKAKIFGQDEAIDSLVSSIK 471 (731)
T ss_pred HHHHHHHhcceeCcHHHHHHHHHHHH
Confidence 46788999999999999998887765
No 14
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=69.47 E-value=2 Score=32.92 Aligned_cols=18 Identities=39% Similarity=0.516 Sum_probs=16.5
Q ss_pred hccchhhhHHHHHHHHHH
Q psy13428 16 VVGQEHAKKVLSVAVYNH 33 (67)
Q Consensus 16 VIGQe~AKKvLaVAVyNH 33 (67)
||||+.+|++|..++.|+
T Consensus 19 ivGq~~~k~al~~~~~~p 36 (350)
T CHL00081 19 IVGQEEMKLALILNVIDP 36 (350)
T ss_pred HhChHHHHHHHHHhccCC
Confidence 899999999999998875
No 15
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=68.25 E-value=3.9 Score=34.53 Aligned_cols=28 Identities=21% Similarity=0.370 Sum_probs=24.1
Q ss_pred hHHHHHHHhhhhccchhhhHHHHHHHHH
Q psy13428 5 NPKIYEYLNKHVVGQEHAKKVLSVAVYN 32 (67)
Q Consensus 5 PkeI~~~LD~yVIGQe~AKKvLaVAVyN 32 (67)
...+.+.|.+.|+||+.|.+.++-++..
T Consensus 557 l~~l~~~L~~~v~GQ~~Av~~v~~~i~~ 584 (852)
T TIGR03345 557 VLSLPDRLAERVIGQDHALEAIAERIRT 584 (852)
T ss_pred HHHHHHHhcCeEcChHHHHHHHHHHHHH
Confidence 4567899999999999999998888864
No 16
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=56.19 E-value=6.6 Score=32.19 Aligned_cols=17 Identities=47% Similarity=0.632 Sum_probs=14.5
Q ss_pred hhccchhhhHHHHHHHH
Q psy13428 15 HVVGQEHAKKVLSVAVY 31 (67)
Q Consensus 15 yVIGQe~AKKvLaVAVy 31 (67)
=|+||+.||++|=+|.-
T Consensus 180 DV~GQ~~AKrAleiAAA 196 (490)
T COG0606 180 DVKGQEQAKRALEIAAA 196 (490)
T ss_pred hhcCcHHHHHHHHHHHh
Confidence 38999999999988753
No 17
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=51.21 E-value=14 Score=31.87 Aligned_cols=26 Identities=31% Similarity=0.405 Sum_probs=21.1
Q ss_pred HHHHHHHhhhhccchhhhHHHHHHHH
Q psy13428 6 PKIYEYLNKHVVGQEHAKKVLSVAVY 31 (67)
Q Consensus 6 keI~~~LD~yVIGQe~AKKvLaVAVy 31 (67)
..+.+.|.+.||||+.|=+++|=||.
T Consensus 483 l~le~~L~~rViGQd~AV~avs~aIr 508 (786)
T COG0542 483 LNLERRLKKRVIGQDEAVEAVSDAIR 508 (786)
T ss_pred HHHHHHHhcceeChHHHHHHHHHHHH
Confidence 35678899999999999887776664
No 18
>KOG1051|consensus
Probab=49.54 E-value=17 Score=31.67 Aligned_cols=27 Identities=30% Similarity=0.480 Sum_probs=23.8
Q ss_pred HHHHHHHhhhhccchhhhHHHHHHHHH
Q psy13428 6 PKIYEYLNKHVVGQEHAKKVLSVAVYN 32 (67)
Q Consensus 6 keI~~~LD~yVIGQe~AKKvLaVAVyN 32 (67)
+.+.+.|-+.|+||+.|=+++|-||+.
T Consensus 554 ~~L~~~L~~~V~gQ~eAv~aIa~AI~~ 580 (898)
T KOG1051|consen 554 KKLEERLHERVIGQDEAVAAIAAAIRR 580 (898)
T ss_pred HHHHHHHHhhccchHHHHHHHHHHHHh
Confidence 357788999999999999999999975
No 19
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=44.50 E-value=13 Score=29.48 Aligned_cols=16 Identities=38% Similarity=0.578 Sum_probs=13.2
Q ss_pred hhccchhhhHHHHHHH
Q psy13428 15 HVVGQEHAKKVLSVAV 30 (67)
Q Consensus 15 yVIGQe~AKKvLaVAV 30 (67)
=||||+.||+...+-+
T Consensus 122 dViGqEeAK~kcrli~ 137 (368)
T COG1223 122 DVIGQEEAKRKCRLIM 137 (368)
T ss_pred hhhchHHHHHHHHHHH
Confidence 3899999999887654
No 20
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=43.17 E-value=52 Score=19.20 Aligned_cols=36 Identities=22% Similarity=0.241 Sum_probs=28.0
Q ss_pred ChHHHHHHHhhhhccchhhhHHHHHHHHHHHHHhhh
Q psy13428 4 VNPKIYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYN 39 (67)
Q Consensus 4 tPkeI~~~LD~yVIGQe~AKKvLaVAVyNHYkRi~~ 39 (67)
+..+|.....+..-.-+....-|---||+||+.+-.
T Consensus 20 s~~~i~~~~~~L~~~i~~~~~eLr~~V~~nY~~fI~ 55 (87)
T PF08700_consen 20 SIKEIRQLENKLRQEIEEKDEELRKLVYENYRDFIE 55 (87)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 456777777777777777778888899999998753
No 21
>KOG2170|consensus
Probab=43.13 E-value=31 Score=27.35 Aligned_cols=30 Identities=23% Similarity=0.370 Sum_probs=26.4
Q ss_pred HHHHHHhhhhccchhhhHHHHHHHHHHHHH
Q psy13428 7 KIYEYLNKHVVGQEHAKKVLSVAVYNHYKR 36 (67)
Q Consensus 7 eI~~~LD~yVIGQe~AKKvLaVAVyNHYkR 36 (67)
.+..-|++.+.||+-||..+--|+..|+.-
T Consensus 75 ~Le~dL~~~lfGQHla~~~Vv~alk~~~~n 104 (344)
T KOG2170|consen 75 GLEKDLARALFGQHLAKQLVVNALKSHWAN 104 (344)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHHHHhcC
Confidence 577889999999999999998899998853
No 22
>cd03734 SOCS_CIS1 SOCS (suppressors of cytokine signaling) box of CIS (cytokine-inducible SH2 protein) 1-like proteins. Together with the SOCS proteins, the CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. CIS1, like SOCS1 and SOCS3, is involved in the down-regulation of the JAK/STAT pathway. CIS1 binds to cytokine receptors at STAT5-docking sites, which prohibits recruitment of STAT5 to the receptor signaling complex and results in the down-regulation of activation by STAT5.
Probab=40.68 E-value=21 Score=19.92 Aligned_cols=14 Identities=14% Similarity=0.420 Sum_probs=12.6
Q ss_pred CCChHHHHHHHhhh
Q psy13428 2 ILVNPKIYEYLNKH 15 (67)
Q Consensus 2 l~tPkeI~~~LD~y 15 (67)
+|-|+-+++||.+|
T Consensus 24 LpLP~~L~~yL~~y 37 (41)
T cd03734 24 LPLPRRMADYLRQY 37 (41)
T ss_pred CCCCHHHHHHHHHC
Confidence 67899999999988
No 23
>cd03738 SOCS_SOCS4 SOCS (suppressors of cytokine signaling) box of SOCS4-like proteins. Together with CIS1, the CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=40.32 E-value=20 Score=21.50 Aligned_cols=18 Identities=11% Similarity=0.157 Sum_probs=15.0
Q ss_pred CCChHHHHHHHhhhhccc
Q psy13428 2 ILVNPKIYEYLNKHVVGQ 19 (67)
Q Consensus 2 l~tPkeI~~~LD~yVIGQ 19 (67)
+|-|..|++||.+|=-.|
T Consensus 26 LPLP~~LK~YLkeY~y~~ 43 (56)
T cd03738 26 LPIPSSMKLYLKEYHYKS 43 (56)
T ss_pred CCCCHHHHHHHHhCCCcc
Confidence 688999999999995544
No 24
>PF13654 AAA_32: AAA domain; PDB: 3K1J_B.
Probab=40.10 E-value=9.5 Score=30.64 Aligned_cols=17 Identities=29% Similarity=0.552 Sum_probs=0.0
Q ss_pred hhhccchhhhHHHHHHH
Q psy13428 14 KHVVGQEHAKKVLSVAV 30 (67)
Q Consensus 14 ~yVIGQe~AKKvLaVAV 30 (67)
..+|||++|.+++-.|+
T Consensus 8 ~~~iGQ~RA~~Al~~gl 24 (509)
T PF13654_consen 8 EGIIGQERAVEALEFGL 24 (509)
T ss_dssp -----------------
T ss_pred ccccccccccccccccc
Confidence 56899999999999888
No 25
>cd03736 SOCS_SOCS2 SOCS (suppressors of cytokine signaling) box of SOCS2-like proteins. Together with CIS1, the CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. SOCS2 has recently been shown to regulate neuronal differentiation by controlling expression of a neurogenic transcription factor, Neurogenin-1. SOCS2 binds to GH receptors and inhibits the activation of STAT5b induced by GH. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=40.09 E-value=22 Score=19.64 Aligned_cols=15 Identities=13% Similarity=0.421 Sum_probs=13.0
Q ss_pred CCChHHHHHHHhhhh
Q psy13428 2 ILVNPKIYEYLNKHV 16 (67)
Q Consensus 2 l~tPkeI~~~LD~yV 16 (67)
+|-|.-+++||.+|-
T Consensus 24 LpLP~~Lk~yL~~y~ 38 (41)
T cd03736 24 LPLPTRLKDYLTEYT 38 (41)
T ss_pred CCCCHHHHHHHHHCC
Confidence 578999999999884
No 26
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=39.06 E-value=18 Score=28.47 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=17.3
Q ss_pred HHhhhhccchhhhHHHHHHHHHH
Q psy13428 11 YLNKHVVGQEHAKKVLSVAVYNH 33 (67)
Q Consensus 11 ~LD~yVIGQe~AKKvLaVAVyNH 33 (67)
.|++| |||++.|.-|.|.+.--
T Consensus 24 ~l~ef-iGQ~~vk~~L~ifI~AA 45 (332)
T COG2255 24 TLDEF-IGQEKVKEQLQIFIKAA 45 (332)
T ss_pred cHHHh-cChHHHHHHHHHHHHHH
Confidence 45666 49999999999987653
No 27
>cd03735 SOCS_SOCS1 SOCS (suppressors of cytokine signaling) box of SOCS1-like proteins. Together with CIS1, the CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. SOCS1, like CIS1 and SOCS3, is involved in the down-regulation of the JAK/STAT pathway. SOCS1 has a dual function as a direct potent JAK kinase inhibitor and as a component of an E3 ubiquitin-ligase complex recruiting substrates to the protein degradation machinery.
Probab=38.33 E-value=24 Score=19.97 Aligned_cols=14 Identities=36% Similarity=0.695 Sum_probs=12.3
Q ss_pred CCChHHHHHHHhhh
Q psy13428 2 ILVNPKIYEYLNKH 15 (67)
Q Consensus 2 l~tPkeI~~~LD~y 15 (67)
+|-|.-+++||.+|
T Consensus 26 lpLP~~LKdyL~~y 39 (43)
T cd03735 26 IPLNPVLKDYLKSF 39 (43)
T ss_pred CcCCHHHHHHHHhC
Confidence 57799999999987
No 28
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=37.69 E-value=19 Score=27.36 Aligned_cols=18 Identities=33% Similarity=0.499 Sum_probs=14.5
Q ss_pred hhccchhhhHHHHHHHHH
Q psy13428 15 HVVGQEHAKKVLSVAVYN 32 (67)
Q Consensus 15 yVIGQe~AKKvLaVAVyN 32 (67)
-||||+.+|++|-+++-+
T Consensus 5 ~ivgq~~~~~al~~~~~~ 22 (337)
T TIGR02030 5 AIVGQDEMKLALLLNVID 22 (337)
T ss_pred ccccHHHHHHHHHHHhcC
Confidence 379999999998776655
No 29
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=37.68 E-value=34 Score=28.74 Aligned_cols=27 Identities=33% Similarity=0.445 Sum_probs=22.9
Q ss_pred HHHHHHhhhhccchhhhHHHHHHHHHH
Q psy13428 7 KIYEYLNKHVVGQEHAKKVLSVAVYNH 33 (67)
Q Consensus 7 eI~~~LD~yVIGQe~AKKvLaVAVyNH 33 (67)
.+.+.|.+.|+||+.|-+.++-++...
T Consensus 558 ~l~~~l~~~v~GQ~~av~~v~~~i~~~ 584 (852)
T TIGR03346 558 HMEEVLHERVVGQDEAVEAVSDAIRRS 584 (852)
T ss_pred HHHHHhhcccCCChHHHHHHHHHHHHH
Confidence 466789999999999999988888764
No 30
>PF09702 Cas_Csa5: CRISPR-associated protein (Cas_Csa5); InterPro: IPR010157 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor family of Cas protein found in various species of Sulfolobus and Pyrococcus (all archaeal). It is found with two different CRISPR loci in Sulfolobus solfataricus.
Probab=36.03 E-value=47 Score=22.33 Aligned_cols=30 Identities=17% Similarity=0.199 Sum_probs=22.9
Q ss_pred CCChHHHHHHHhhhhccchhhhHHHHHHHH
Q psy13428 2 ILVNPKIYEYLNKHVVGQEHAKKVLSVAVY 31 (67)
Q Consensus 2 l~tPkeI~~~LD~yVIGQe~AKKvLaVAVy 31 (67)
|||+.|+..+|+.=-=.=--|||+=++|+.
T Consensus 72 lPt~~eVe~Fl~~v~~di~~ArkvgalAma 101 (105)
T PF09702_consen 72 LPTDEEVEDFLDDVERDIYYARKVGALAMA 101 (105)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 799999999998754444568888777763
No 31
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=32.56 E-value=26 Score=26.55 Aligned_cols=16 Identities=31% Similarity=0.571 Sum_probs=13.7
Q ss_pred hhccchhhhHHHHHHH
Q psy13428 15 HVVGQEHAKKVLSVAV 30 (67)
Q Consensus 15 yVIGQe~AKKvLaVAV 30 (67)
.|+||+.+|+.|.++.
T Consensus 9 ~i~Gq~~~~~~l~~~~ 24 (334)
T PRK13407 9 AIVGQEEMKQAMVLTA 24 (334)
T ss_pred HhCCHHHHHHHHHHHH
Confidence 3789999999988866
No 32
>cd03740 SOCS_SOCS6 SOCS (suppressors of cytokine signaling) box of SOCS6-like proteins. Together with CIS1, the CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=32.05 E-value=33 Score=18.93 Aligned_cols=14 Identities=21% Similarity=0.332 Sum_probs=12.1
Q ss_pred CCChHHHHHHHhhh
Q psy13428 2 ILVNPKIYEYLNKH 15 (67)
Q Consensus 2 l~tPkeI~~~LD~y 15 (67)
+|-|.-|++||-+|
T Consensus 26 LpLP~~Lk~yL~~~ 39 (41)
T cd03740 26 LPLPNKMKGYLLEK 39 (41)
T ss_pred CCCCHHHHHHHHcC
Confidence 67899999999876
No 33
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=31.97 E-value=25 Score=28.51 Aligned_cols=19 Identities=32% Similarity=0.396 Sum_probs=16.3
Q ss_pred hhccchhhhHHHHHHHHHH
Q psy13428 15 HVVGQEHAKKVLSVAVYNH 33 (67)
Q Consensus 15 yVIGQe~AKKvLaVAVyNH 33 (67)
-||||+.+|++|.++.-+.
T Consensus 5 ~ivGq~~~~~al~~~av~~ 23 (633)
T TIGR02442 5 AIVGQEDLKLALLLNAVDP 23 (633)
T ss_pred hhcChHHHHHHHHHHhhCC
Confidence 4899999999999988764
No 34
>COG1738 yhhQ Uncharacterized member of the PurR regulon [General function prediction only]
Probab=30.38 E-value=69 Score=23.62 Aligned_cols=34 Identities=29% Similarity=0.235 Sum_probs=28.5
Q ss_pred CCChHHHHHHHhhhhccchhhhHHHHHHHHHHHHHhhhc
Q psy13428 2 ILVNPKIYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYNN 40 (67)
Q Consensus 2 l~tPkeI~~~LD~yVIGQe~AKKvLaVAVyNHYkRi~~~ 40 (67)
.+.||-+.+-+=.|+|||- +=|-+||..||...+
T Consensus 122 ~~~~RI~lASl~AyivsQ~-----~Dv~vf~~lkr~~~~ 155 (233)
T COG1738 122 SFVPRIALASLLAYIVSQL-----LDVWVFNRLKRRTGG 155 (233)
T ss_pred cchHHHHHHHHHHHHHHHH-----HHHHHHHHHHHhcCC
Confidence 3689999999999999984 567899999997543
No 35
>cd03717 SOCS_SOCS_like SOCS (suppressors of cytokine signaling) box of SOCS-like proteins. The CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. These intracellular proteins regulate the responses of immune cells to cytokines. Identified as negative regulators of the cytokine-JAK-STAT pathway, they seem to play a role in many immunological and pathological processes. The function of the SOCS box is the recruitment of the ubiquitin-transferase system. Related SOCS boxes are also present in Rab40-like proteins and insect proteins of unknown function that also contain a NEUZ (domain in neuralized proteins) domain.
Probab=30.08 E-value=37 Score=18.18 Aligned_cols=14 Identities=14% Similarity=0.434 Sum_probs=11.8
Q ss_pred CCChHHHHHHHhhh
Q psy13428 2 ILVNPKIYEYLNKH 15 (67)
Q Consensus 2 l~tPkeI~~~LD~y 15 (67)
+|-|.-|++||..|
T Consensus 26 LpLP~~Lk~yL~~y 39 (39)
T cd03717 26 LPLPRRLKDYLKEY 39 (39)
T ss_pred CCCCHHHHHHHHcC
Confidence 67899999999765
No 36
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=29.78 E-value=30 Score=26.39 Aligned_cols=25 Identities=16% Similarity=0.048 Sum_probs=19.0
Q ss_pred CChHHHHHHHhhhhccchhhhHHHHHHHHH
Q psy13428 3 LVNPKIYEYLNKHVVGQEHAKKVLSVAVYN 32 (67)
Q Consensus 3 ~tPkeI~~~LD~yVIGQe~AKKvLaVAVyN 32 (67)
|.|+... -||||+.|++.|.=++.+
T Consensus 13 ~~P~~~~-----~iiGq~~~~~~L~~~~~~ 37 (365)
T PRK07471 13 PHPRETT-----ALFGHAAAEAALLDAYRS 37 (365)
T ss_pred CCCCchh-----hccChHHHHHHHHHHHHc
Confidence 5666653 378999999999877765
No 37
>PF12630 Pox_polyA_pol_N: Poxvirus poly(A) polymerase N-terminal domain; InterPro: IPR024398 This domain is found at the N terminus of the pox virus Poly(A) polymerase protein []. Poly(A) polymerase (2.7.7.19 from EC) catalyses template-independent extension of the 3'-end of a DNA or RNA strand by one nucleotide at a time. The Poxvirus enzyme creates the 3'(poly)A tail of mRNAs, and is a heterodimer of a catalytic and a regulatory subunit. This is the catalytic subunit.; PDB: 3ERC_C 3ER8_D 3OWG_A 2GA9_D 2GAF_D 3ER9_B.
Probab=29.64 E-value=45 Score=22.55 Aligned_cols=23 Identities=13% Similarity=0.096 Sum_probs=17.5
Q ss_pred CChHHHHHHHhhhhccchhhhHH
Q psy13428 3 LVNPKIYEYLNKHVVGQEHAKKV 25 (67)
Q Consensus 3 ~tPkeI~~~LD~yVIGQe~AKKv 25 (67)
-+|.||++.+++|.--|+++.++
T Consensus 60 ~s~~eIk~rI~~YFsKQ~~~~ki 82 (108)
T PF12630_consen 60 SSDSEIKRRILEYFSKQRRTYKI 82 (108)
T ss_dssp S-THHHHHHHHHHTTGGGC---H
T ss_pred CCHHHHHHHHHHHHHhcccHHHH
Confidence 36899999999999999999864
No 38
>cd03742 SOCS_Rab40 SOCS (suppressors of cytokine signaling) box of Rab40-like proteins. Rab40 is part of the Rab family of small GTP-binding proteins that form the largest family within the Ras superfamily. Rab proteins regulate vesicular trafficking pathways, behaving as membrane-associated molecular switches. Rab40 is characterized by a SOCS box c-terminal to the GTPase domain. The SOCS boxes interact with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=28.81 E-value=43 Score=19.01 Aligned_cols=17 Identities=12% Similarity=0.131 Sum_probs=14.0
Q ss_pred CCChHHHHHHHhhhhcc
Q psy13428 2 ILVNPKIYEYLNKHVVG 18 (67)
Q Consensus 2 l~tPkeI~~~LD~yVIG 18 (67)
+|-|.-+++||-+|-.+
T Consensus 26 LPLP~~Lk~yLkey~~~ 42 (43)
T cd03742 26 LPLPVSIKSHLKSFAMA 42 (43)
T ss_pred CCCCHHHHHHHHhcccc
Confidence 67899999999998543
No 39
>PRK00665 petG cytochrome b6-f complex subunit PetG; Reviewed
Probab=28.69 E-value=42 Score=18.87 Aligned_cols=11 Identities=64% Similarity=0.966 Sum_probs=9.8
Q ss_pred HHHHHHHHHHH
Q psy13428 26 LSVAVYNHYKR 36 (67)
Q Consensus 26 LaVAVyNHYkR 36 (67)
|-||-|+.|||
T Consensus 21 lfvaAylQYrR 31 (37)
T PRK00665 21 LFVAAWNQYKR 31 (37)
T ss_pred HHHHHHHHHhc
Confidence 56899999998
No 40
>cd03737 SOCS_SOCS3 SOCS (suppressors of cytokine signaling) box of SOCS3-like proteins. Together with CIS1, the CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. SOCS3, like CIS1 and SOCS1, is involved in the down-regulation of the JAK/STAT pathway. SOCS3 inhibits JAK activity indirectly through recruitment to the cytokine receptors. SOCS3 has been shown to play an essential role in placental development and a non-essential role in embryo development. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=28.56 E-value=32 Score=19.31 Aligned_cols=11 Identities=27% Similarity=0.374 Sum_probs=8.5
Q ss_pred hHHHHHHHhhh
Q psy13428 5 NPKIYEYLNKH 15 (67)
Q Consensus 5 PkeI~~~LD~y 15 (67)
|.-|++||.+|
T Consensus 28 P~~Lk~yL~~Y 38 (42)
T cd03737 28 PLPIKEFLDQY 38 (42)
T ss_pred cHHHHHHHHhC
Confidence 44499999877
No 41
>CHL00181 cbbX CbbX; Provisional
Probab=27.04 E-value=1.5e+02 Score=21.58 Aligned_cols=21 Identities=19% Similarity=0.433 Sum_probs=18.7
Q ss_pred HHHHHHHhhhhccchhhhHHH
Q psy13428 6 PKIYEYLNKHVVGQEHAKKVL 26 (67)
Q Consensus 6 keI~~~LD~yVIGQe~AKKvL 26 (67)
.++.+.||.-++|++..|+.+
T Consensus 15 ~~~~~~l~~~l~Gl~~vK~~i 35 (287)
T CHL00181 15 QEVLDILDEELVGLAPVKTRI 35 (287)
T ss_pred HHHHHHHHHhcCCcHHHHHHH
Confidence 578899999999999999966
No 42
>PF12875 DUF3826: Protein of unknown function (DUF3826); InterPro: IPR024284 This is a putative sugar-binding family.; PDB: 3KDW_A 3G6I_A.
Probab=25.68 E-value=1.2e+02 Score=22.30 Aligned_cols=30 Identities=30% Similarity=0.392 Sum_probs=18.1
Q ss_pred HHHHHHHhhhhccchhhhHHHHH--HHHHHHHHhhhc
Q psy13428 6 PKIYEYLNKHVVGQEHAKKVLSV--AVYNHYKRIYNN 40 (67)
Q Consensus 6 keI~~~LD~yVIGQe~AKKvLaV--AVyNHYkRi~~~ 40 (67)
.+|++.| |...++|.-.| .|.|||+-++.-
T Consensus 11 ~KIVa~L-----~L~Da~K~~~V~~VIan~y~~L~Di 42 (188)
T PF12875_consen 11 QKIVAKL-----GLTDAAKEKRVRNVIANQYRELNDI 42 (188)
T ss_dssp HHHHHHH-------S-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHc-----CCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666 55665554444 799999988643
No 43
>PRK10865 protein disaggregation chaperone; Provisional
Probab=25.38 E-value=58 Score=27.64 Aligned_cols=27 Identities=26% Similarity=0.378 Sum_probs=22.4
Q ss_pred HHHHHHHhhhhccchhhhHHHHHHHHH
Q psy13428 6 PKIYEYLNKHVVGQEHAKKVLSVAVYN 32 (67)
Q Consensus 6 keI~~~LD~yVIGQe~AKKvLaVAVyN 32 (67)
..+.+.|.+.||||+.|-+.++-+|..
T Consensus 560 ~~l~~~l~~~viGQ~~ai~~l~~~i~~ 586 (857)
T PRK10865 560 LRMEQELHHRVIGQNEAVEAVSNAIRR 586 (857)
T ss_pred HHHHHHhCCeEeCCHHHHHHHHHHHHH
Confidence 357788999999999999988877754
No 44
>cd03739 SOCS_SOCS5 SOCS (suppressors of cytokine signaling) box of SOCS5-like proteins. Together with CIS1, the CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. SOCS5 inhibits Th2 differentiation by inhibiting IL-4 signaling. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=25.06 E-value=52 Score=19.84 Aligned_cols=18 Identities=11% Similarity=0.216 Sum_probs=15.3
Q ss_pred CCChHHHHHHHhhhhccc
Q psy13428 2 ILVNPKIYEYLNKHVVGQ 19 (67)
Q Consensus 2 l~tPkeI~~~LD~yVIGQ 19 (67)
+|-|+-+++||.+|=--|
T Consensus 26 LPLP~~LKdyLkeY~y~~ 43 (57)
T cd03739 26 LPLPSMLQDFLKEYHYKQ 43 (57)
T ss_pred CcCCHHHHHHHHhCCCCc
Confidence 578999999999996655
No 45
>CHL00008 petG cytochrome b6/f complex subunit V
Probab=24.39 E-value=59 Score=18.29 Aligned_cols=12 Identities=42% Similarity=0.611 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHh
Q psy13428 26 LSVAVYNHYKRI 37 (67)
Q Consensus 26 LaVAVyNHYkRi 37 (67)
|-||-|..|||=
T Consensus 21 lfvaAylQYrRg 32 (37)
T CHL00008 21 LFVTAYLQYRRG 32 (37)
T ss_pred HHHHHHHHHhhc
Confidence 568999999984
No 46
>PF13865 FoP_duplication: C-terminal duplication domain of Friend of PRMT1
Probab=22.44 E-value=1.9e+02 Score=17.41 Aligned_cols=29 Identities=10% Similarity=0.070 Sum_probs=20.1
Q ss_pred CChHHHHHHHhhhhccchhhhHHHHHHHHHHH
Q psy13428 3 LVNPKIYEYLNKHVVGQEHAKKVLSVAVYNHY 34 (67)
Q Consensus 3 ~tPkeI~~~LD~yVIGQe~AKKvLaVAVyNHY 34 (67)
+|-.||-++||.|. ..+|.-|=--+=+++
T Consensus 40 kT~EeLDaELD~Ym---~~~~~~LD~~Ld~Y~ 68 (74)
T PF13865_consen 40 KTAEELDAELDAYM---SKTKSKLDAELDSYM 68 (74)
T ss_pred CCHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 57789999999999 555555544444443
No 47
>PF10638 Sfi1_C: Spindle body associated protein C-terminus ; InterPro: IPR018907 This C-terminal domain of spindle-body-associated protein Sfi1 has an important role to play in the bridge-splitting during bi-polar spindle assembly, and this separation event possibly requires interaction with integral components of the nuclear envelope, such as the Mps2-Bbp1 complex []. Centrally to this domain is a region carrying centrin-binding repeats with repeating units containing tryptophan, IPR013665 from INTERPRO.
Probab=21.83 E-value=96 Score=20.93 Aligned_cols=27 Identities=30% Similarity=0.420 Sum_probs=22.2
Q ss_pred hhhccchhhhHHHHHHHHHHHHHhhhc
Q psy13428 14 KHVVGQEHAKKVLSVAVYNHYKRIYNN 40 (67)
Q Consensus 14 ~yVIGQe~AKKvLaVAVyNHYkRi~~~ 40 (67)
.-|=|-|+-|+-=-=|+-|||.|.+..
T Consensus 21 ~TIPGSE~vK~~rmeamk~~YsrARRa 47 (108)
T PF10638_consen 21 NTIPGSERVKRYRMEAMKNHYSRARRA 47 (108)
T ss_pred cccCchHHHHHHHHHHHHHHHHHHHhh
Confidence 346688889888888999999999755
No 48
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=21.48 E-value=26 Score=20.47 Aligned_cols=9 Identities=22% Similarity=0.224 Sum_probs=6.3
Q ss_pred CCCChHHHH
Q psy13428 1 MILVNPKIY 9 (67)
Q Consensus 1 ~l~tPkeI~ 9 (67)
++|+|++|.
T Consensus 30 liP~P~~i~ 38 (73)
T PF11823_consen 30 LIPTPREIS 38 (73)
T ss_pred EeCCChhcc
Confidence 367888874
No 49
>smart00253 SOCS suppressors of cytokine signalling. suppressors of cytokine signalling
Probab=21.23 E-value=69 Score=17.41 Aligned_cols=14 Identities=29% Similarity=0.572 Sum_probs=11.4
Q ss_pred CCChHHHHHHHhhh
Q psy13428 2 ILVNPKIYEYLNKH 15 (67)
Q Consensus 2 l~tPkeI~~~LD~y 15 (67)
+|-|.-|++||..|
T Consensus 30 LpLP~~lk~yL~~y 43 (43)
T smart00253 30 LPLPPKLKDYLSYY 43 (43)
T ss_pred CCCCHHHHHHHHhC
Confidence 57789999998765
No 50
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=21.14 E-value=80 Score=18.96 Aligned_cols=14 Identities=21% Similarity=0.358 Sum_probs=12.4
Q ss_pred CChHHHHHHHhhhh
Q psy13428 3 LVNPKIYEYLNKHV 16 (67)
Q Consensus 3 ~tPkeI~~~LD~yV 16 (67)
+++.+|++|++.|.
T Consensus 16 lsT~dI~~y~~~y~ 29 (62)
T PF10309_consen 16 LSTDDIKAYFSEYF 29 (62)
T ss_pred CCHHHHHHHHHHhc
Confidence 57899999999993
No 51
>PF13867 SAP30_Sin3_bdg: Sin3 binding region of histone deacetylase complex subunit SAP30; PDB: 2LD7_A.
Probab=20.31 E-value=1.8e+02 Score=16.42 Aligned_cols=19 Identities=26% Similarity=0.328 Sum_probs=13.6
Q ss_pred hhhhHHHHHHHHHHHHHhh
Q psy13428 20 EHAKKVLSVAVYNHYKRIY 38 (67)
Q Consensus 20 e~AKKvLaVAVyNHYkRi~ 38 (67)
.-.|.-|+.||..||....
T Consensus 20 ~~sK~qLa~~V~kHF~s~~ 38 (53)
T PF13867_consen 20 RSSKEQLANAVRKHFNSQP 38 (53)
T ss_dssp S--HHHHHHHHHHHHTT--
T ss_pred CCCHHHHHHHHHHHHhcCC
Confidence 6778899999999997655
Done!