RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13428
         (67 letters)



>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
          Length = 443

 Score = 65.9 bits (160), Expect = 2e-15
 Identities = 11/36 (30%), Positives = 24/36 (66%), Gaps = 1/36 (2%)

Query: 6  PK-IYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYNN 40
          P+ I   L++H++GQ  AK+ +++A+ N ++R+   
Sbjct: 5  PREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQ 40


>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}
          Length = 364

 Score = 62.9 bits (152), Expect = 3e-14
 Identities = 21/34 (61%), Positives = 26/34 (76%), Gaps = 1/34 (2%)

Query: 6  PK-IYEYLNKHVVGQEHAKKVLSVAVYNHYKRIY 38
          PK +   L+ +V+GQE AKKV SVAVYNHYKR+ 
Sbjct: 8  PKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLS 41


>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
          Length = 309

 Score = 58.7 bits (141), Expect = 9e-13
 Identities = 11/34 (32%), Positives = 24/34 (70%), Gaps = 1/34 (2%)

Query: 6  PK-IYEYLNKHVVGQEHAKKVLSVAVYNHYKRIY 38
          P+ I   L++H++GQ  AK+ +++A+ N ++R+ 
Sbjct: 5  PREIVSELDQHIIGQADAKRAVAIALRNRWRRMQ 38


>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+
          modules {Escherichia coli [TaxId: 562]}
          Length = 315

 Score = 47.1 bits (111), Expect = 1e-08
 Identities = 7/33 (21%), Positives = 15/33 (45%)

Query: 7  KIYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYN 39
           + + L   V GQ+ A + L+ A+      + +
Sbjct: 15 NLGDRLKMLVFGQDKAIEALTEAIKMARAGLGH 47


>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus
          thermophilus [TaxId: 274]}
          Length = 315

 Score = 40.5 bits (94), Expect = 2e-06
 Identities = 9/33 (27%), Positives = 19/33 (57%)

Query: 7  KIYEYLNKHVVGQEHAKKVLSVAVYNHYKRIYN 39
          ++ E L+K VVGQ+ A + ++ A+      + +
Sbjct: 16 RLEEELHKRVVGQDEAIRAVADAIRRARAGLKD 48


>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB
          {Thermus thermophilus [TaxId: 274]}
          Length = 239

 Score = 32.6 bits (73), Expect = 0.001
 Identities = 7/21 (33%), Positives = 10/21 (47%)

Query: 16 VVGQEHAKKVLSVAVYNHYKR 36
           +GQE  K+ L V +     R
Sbjct: 11 YIGQERLKQKLRVYLEAAKAR 31


>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB
          {Thermotoga maritima [TaxId: 2336]}
          Length = 238

 Score = 30.7 bits (68), Expect = 0.007
 Identities = 9/21 (42%), Positives = 13/21 (61%)

Query: 16 VVGQEHAKKVLSVAVYNHYKR 36
           +GQE+ KK LS+A+     R
Sbjct: 11 FIGQENVKKKLSLALEAAKMR 31


>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase,
          BchI {Rhodobacter capsulatus [TaxId: 1061]}
          Length = 333

 Score = 26.8 bits (58), Expect = 0.17
 Identities = 6/15 (40%), Positives = 8/15 (53%)

Query: 16 VVGQEHAKKVLSVAV 30
          +VGQE  K  L +  
Sbjct: 9  IVGQEDMKLALLLTA 23


>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's
          yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 253

 Score = 23.2 bits (48), Expect = 3.7
 Identities = 5/25 (20%), Positives = 9/25 (36%)

Query: 16 VVGQEHAKKVLSVAVYNHYKRIYNN 40
          V G + +   L   + N      N+
Sbjct: 16 VCGNKGSVMKLKNWLANWENSKKNS 40


>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III,
          N-domain {Escherichia coli [TaxId: 562]}
          Length = 239

 Score = 22.4 bits (47), Expect = 5.6
 Identities = 7/17 (41%), Positives = 9/17 (52%)

Query: 14 KHVVGQEHAKKVLSVAV 30
            VVGQEH    L+  +
Sbjct: 12 ADVVGQEHVLTALANGL 28


>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast
          (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 227

 Score = 22.0 bits (45), Expect = 9.9
 Identities = 4/15 (26%), Positives = 5/15 (33%)

Query: 16 VVGQEHAKKVLSVAV 30
          V GQ      +   V
Sbjct: 16 VYGQNEVITTVRKFV 30


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.313    0.125    0.336 

Gapped
Lambda     K      H
   0.267   0.0558    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 217,976
Number of extensions: 7094
Number of successful extensions: 32
Number of sequences better than 10.0: 1
Number of HSP's gapped: 32
Number of HSP's successfully gapped: 15
Length of query: 67
Length of database: 2,407,596
Length adjustment: 36
Effective length of query: 31
Effective length of database: 1,913,316
Effective search space: 59312796
Effective search space used: 59312796
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.3 bits)