BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13429
(116 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2C2N|A Chain A, Structure Of Human Mitochondrial Malonyltransferase
pdb|2C2N|B Chain B, Structure Of Human Mitochondrial Malonyltransferase
Length = 339
Score = 86.7 bits (213), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 60/114 (52%), Gaps = 15/114 (13%)
Query: 1 MVPAVEPFALALKKATINDMIIPVHSNVDGKIYRGENKEVSLSVSSLFRDANHIRRQLPK 60
M PAVEP ALK I ++ V+SNV G YR HI + L +
Sbjct: 238 MEPAVEPLTQALKAVDIKKPLVSVYSNVHGHRYR---------------HPGHIHKLLAQ 282
Query: 61 QIYKPVCWEQTLHILYERPQGNHFPRTFECGPGKSLVTILNQVNKKAGDSAAKV 114
Q+ PV WEQT+H +YER +G FP+TFE GPG+ L IL N +A S + V
Sbjct: 283 QLVSPVKWEQTMHAIYERKKGRGFPQTFEVGPGRQLGAILKSCNMQAWKSYSAV 336
>pdb|1MLA|A Chain A, The Escherichia Coli Malonyl-Coa:acyl Carrier Protein
Transacylase At 1.5-Angstroms Resolution. Crystal
Structure Of A Fatty Acid Synthase Component
Length = 309
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 49/115 (42%), Gaps = 19/115 (16%)
Query: 1 MVPAVEPFALALKKATINDMIIPVHSNVDGKIYRGENKEVSLSVSSLFRDANHIRRQLPK 60
M PA + A+ L K T N +PV +NVD K + + IR L +
Sbjct: 205 MKPAADKLAVELAKITFNAPTVPVVNNVDVKCE---------------TNGDAIRDALVR 249
Query: 61 QIYKPVCWEQTLHILYERPQGNHFPRTFECGPGKSLVTILNQVNKKAGDSAAKVP 115
Q+Y PV W +++ Y QG +E GPGK L + ++ SA P
Sbjct: 250 QLYNPVQWTKSVE--YMAAQG--VEHLYEVGPGKVLTGLTKRIVDTLTASALNEP 300
>pdb|2G1H|A Chain A, Structure Of E.Coli Fabd Complexed With Glycerol
pdb|2G2O|A Chain A, Structure Of E.Coli Fabd Complexed With Sulfate
pdb|2G2Y|A Chain A, Structure Of E.Coli Fabd Complexed With Malonate
pdb|2G2Z|A Chain A, Structure Of E.coli Fabd Complexed With Malonyl-coa
Length = 308
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 49/115 (42%), Gaps = 19/115 (16%)
Query: 1 MVPAVEPFALALKKATINDMIIPVHSNVDGKIYRGENKEVSLSVSSLFRDANHIRRQLPK 60
M PA + A+ L K T N +PV +NVD K + + IR L +
Sbjct: 204 MKPAADKLAVELAKITFNAPTVPVVNNVDVKCE---------------TNGDAIRDALVR 248
Query: 61 QIYKPVCWEQTLHILYERPQGNHFPRTFECGPGKSLVTILNQVNKKAGDSAAKVP 115
Q+Y PV W +++ Y QG +E GPGK L + ++ SA P
Sbjct: 249 QLYNPVQWTKSVE--YMAAQG--VEHLYEVGPGKVLTGLTKRIVDTLTASALNEP 299
>pdb|3K89|A Chain A, Structure Of X. Oryzae Pv. Oryzae Kacc10331, Xoo0880(Fabd)
Complexed With Glycerol
pdb|3R97|A Chain A, Crystal Structure Of Malonyl-Coa:acyl Carrier Protein
Transacylase (Fabd), Xoo0880, From Xanthomonas Oryzae
Pv. Oryzae Kacc10331
Length = 314
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 19/85 (22%)
Query: 22 IPVHSNVDGKIYRGENKEVSLSVSSLFRDANHIRRQLPKQIYKPVCWEQTLHILYERPQG 81
IPV NVD +++ G IR+ L +Q+Y PV W + L QG
Sbjct: 228 IPVVQNVDARVHDGSAA---------------IRQALVEQLYLPVQWTGCVQALAS--QG 270
Query: 82 NHFPRTFECGPGKSLVTILNQVNKK 106
R ECGPGK L ++ +++K
Sbjct: 271 --ITRIAECGPGKVLSGLIKRIDKS 293
>pdb|3H0P|A Chain A, 2.0 Angstrom Crystal Structure Of An Acyl Carrier Protein
S- Malonyltransferase From Salmonella Typhimurium.
pdb|3H0P|B Chain B, 2.0 Angstrom Crystal Structure Of An Acyl Carrier Protein
S- Malonyltransferase From Salmonella Typhimurium
Length = 312
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 48/114 (42%), Gaps = 19/114 (16%)
Query: 3 PAVEPFALALKKATINDMIIPVHSNVDGKIYRGENKEVSLSVSSLFRDANHIRRQLPKQI 62
PA + A+ L K T + +PV +NVD K DA IR L +Q+
Sbjct: 210 PAADKLAVELAKITFSAPTVPVVNNVDVKCE---------------TDAAAIRDALVRQL 254
Query: 63 YKPVCWEQTLHILYERPQGNHFPRTFECGPGKSLVTILNQVNKKAGDSAAKVPC 116
Y PV W +++ + QG +E GPGK L + ++ SA P
Sbjct: 255 YNPVQWTKSVEFI--AAQG--VEHLYEVGPGKVLTGLTKRIVDTLTASALNEPA 304
>pdb|3TQE|A Chain A, Structure Of The Malonyl Coa-Acyl Carrier Protein
Transacylase (Fabd) From Coxiella Burnetii
Length = 316
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 21/106 (19%)
Query: 3 PAVEPFALALKKATINDMIIPVHSNVDGKIYRGENKEVSLSVSSLFRDANHIRRQLPKQI 62
PA + A + K +I+ +PV NVD + +AN IR L KQ+
Sbjct: 211 PAADRLAQDIAKISIDSPKVPVIHNVDVVDHN---------------EANIIRGALIKQL 255
Query: 63 YKPVCWEQTLHILYERPQGNHFPRTF-ECGPGKSLVTILNQVNKKA 107
+PV W +T+ + E QG + F ECGP L ++ ++++++
Sbjct: 256 VRPVRWVETIKYIEE--QGI---KVFXECGPDNKLAGLIKRIDRQS 296
>pdb|3PTW|A Chain A, Crystal Structure Of Malonyl Coa-Acyl Carrier Protein
Transacylase From Clostridium Perfringens Atcc 13124
Length = 336
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 42/103 (40%), Gaps = 19/103 (18%)
Query: 3 PAVEPFALALKKATINDMIIPVHSNVDGKIYRGENKEVSLSVSSLFRDANHIRRQLPKQI 62
PA E L K +IN + V SNV G+ Y D N I L Q+
Sbjct: 205 PAAEKLEDELNKISINKLNGIVMSNVKGEAY--------------LEDDNIIEL-LTSQV 249
Query: 63 YKPVCWEQTLHILYERPQGNHFPRTFECGPGKSLVTILNQVNK 105
KPV + + + E + E GPGK+L + ++NK
Sbjct: 250 KKPVLFINDIEKMIE----SGVDTFIEIGPGKALSGFVKKINK 288
>pdb|3G87|A Chain A, Crystal Structure Of Malonyl Coa-Acyl Carrier Protein
Transacylase From Burkholderia Pseudomallei Using Dried
Seaweed As Nucleant Or Protease
Length = 394
Score = 34.7 bits (78), Expect = 0.014, Method: Composition-based stats.
Identities = 32/110 (29%), Positives = 47/110 (42%), Gaps = 23/110 (20%)
Query: 1 MVPAVEPFALALKKATINDMIIPVHSNVDGKIYRGENKEVSLSVSSLFRDANHIRRQLPK 60
M PA + FA L+ + D IPV SNV + Y EN VS L +
Sbjct: 200 MRPAQQAFAAHLQSFRLADPAIPVISNVSARPY--ENGRVS--------------EGLAQ 243
Query: 61 QIYKPVCWEQTLHILY----ERPQGNHFPRTFECGPGKSLVTILNQVNKK 106
QI PV W +++ L ER + F E G G L +++ + ++
Sbjct: 244 QIASPVRWCESIRYLLALAAERGEAIEFT---ELGHGDVLTRLVHTIRRQ 290
>pdb|3HJV|A Chain A, 1.7 Angstrom Resolution Crystal Structure Of An Acyl
Carrier Protein S-Malonyltransferase From Vibrio
Cholerae O1 Biovar Eltor Str. N16961
pdb|3HJV|B Chain B, 1.7 Angstrom Resolution Crystal Structure Of An Acyl
Carrier Protein S-Malonyltransferase From Vibrio
Cholerae O1 Biovar Eltor Str. N16961
Length = 312
Score = 33.1 bits (74), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 41/103 (39%), Gaps = 19/103 (18%)
Query: 3 PAVEPFALALKKATINDMIIPVHSNVDGKIYRGENKEVSLSVSSLFRDANHIRRQLPKQI 62
PA + A L + N IPV +NVD E D I+ L +Q+
Sbjct: 212 PAADELAKTLAELEFNAPQIPVINNVD---VVAET------------DPVKIKDALIRQL 256
Query: 63 YKPVCWEQTLHILYERPQGNHFPRTFECGPGKSLVTILNQVNK 105
Y PV W + + E+ + E GPGK L + ++ K
Sbjct: 257 YSPVRWTECV----EQXSAQGVEKLIEXGPGKVLTGLTKRIVK 295
>pdb|3IM9|A Chain A, Crystal Structure Of Mcat From Staphylococcus Aureus
Length = 316
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Query: 50 DANHIRRQLPKQIYKPVCWEQTLHILYERPQG-NHFPRTFECGPGKSLVTILNQVNK 105
D I+ + KQ+Y PV + + L + QG +HF E GPGK L ++ ++N+
Sbjct: 245 DKEVIKSNMVKQLYSPVQFINSTEWLID--QGVDHF---IEIGPGKVLSGLIKKINR 296
>pdb|3QAT|A Chain A, Crystal Structure Of
Acyl-Carrier-Protein-S-Malonyltransferase From
Bartonella Henselae
pdb|3QAT|B Chain B, Crystal Structure Of
Acyl-Carrier-Protein-S-Malonyltransferase From
Bartonella Henselae
Length = 318
Score = 28.5 bits (62), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
Query: 50 DANHIRRQLPKQIYKPVCWEQTLHILYERPQGNHFPRTFECGPGKSLVTILNQVNK 105
D I L +Q+ V W +T+ E N FE G GK L + ++NK
Sbjct: 245 DPERIVSLLVQQVTGRVRWRETI----EWISANGVNTLFEIGSGKVLTGLARRINK 296
>pdb|1DAA|A Chain A, Crystallographic Structure Of D-Amino Acid
Aminotransferase Complexed With Pyridoxal-5'-Phosphate
pdb|1DAA|B Chain B, Crystallographic Structure Of D-Amino Acid
Aminotransferase Complexed With Pyridoxal-5'-Phosphate
pdb|2DAA|A Chain A, Crystallographic Structure Of D-Amino Acid
Aminotransferase Inactivated By D-Cycloserine
pdb|2DAA|B Chain B, Crystallographic Structure Of D-Amino Acid
Aminotransferase Inactivated By D-Cycloserine
Length = 282
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Query: 31 KIYRGENKEVSLSVSSLFRDANHIRRQLPKQIYKPVCWEQTLHILYERPQGNHFPRTFEC 90
K+Y GE V+ + L+ A IR +P Y + Q LH L E+ + N F+
Sbjct: 35 KVYNGEMFTVNEHIDRLYASAEKIRITIP---YTKDKFHQLLHELVEKNELNTGHIYFQV 91
Query: 91 GPGKS 95
G S
Sbjct: 92 TRGTS 96
>pdb|5DAA|A Chain A, E177k Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxamine-5'-Phosphate
pdb|5DAA|B Chain B, E177k Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxamine-5'-Phosphate
Length = 277
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Query: 31 KIYRGENKEVSLSVSSLFRDANHIRRQLPKQIYKPVCWEQTLHILYERPQGNHFPRTFEC 90
K+Y GE V+ + L+ A IR +P Y + Q LH L E+ + N F+
Sbjct: 35 KVYNGEMFTVNEHIDRLYASAEKIRITIP---YTKDKFHQLLHELVEKNELNTGHIYFQV 91
Query: 91 GPGKS 95
G S
Sbjct: 92 TRGTS 96
>pdb|3DAA|A Chain A, Crystallographic Structure Of D-Amino Acid
Aminotransferase Inactivated By Pyridoxyl-D-Alanine
pdb|3DAA|B Chain B, Crystallographic Structure Of D-Amino Acid
Aminotransferase Inactivated By Pyridoxyl-D-Alanine
pdb|4DAA|A Chain A, Crystallographic Structure Of D-Amino Acid
Aminotransferase In Pyridoxal-5'-Phosphate (Plp) Form
pdb|4DAA|B Chain B, Crystallographic Structure Of D-Amino Acid
Aminotransferase In Pyridoxal-5'-Phosphate (Plp) Form
Length = 277
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Query: 31 KIYRGENKEVSLSVSSLFRDANHIRRQLPKQIYKPVCWEQTLHILYERPQGNHFPRTFEC 90
K+Y GE V+ + L+ A IR +P Y + Q LH L E+ + N F+
Sbjct: 35 KVYNGEMFTVNEHIDRLYASAEKIRITIP---YTKDKFHQLLHELVEKNELNTGHIYFQV 91
Query: 91 GPGKS 95
G S
Sbjct: 92 TRGTS 96
>pdb|1A0G|A Chain A, L201a Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxamine-5'-Phosphate
pdb|1A0G|B Chain B, L201a Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxamine-5'-Phosphate
pdb|2DAB|A Chain A, L201a Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxal-5'-Phosphate
pdb|2DAB|B Chain B, L201a Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxal-5'-Phosphate
Length = 282
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Query: 31 KIYRGENKEVSLSVSSLFRDANHIRRQLPKQIYKPVCWEQTLHILYERPQGNHFPRTFEC 90
K+Y GE V+ + L+ A IR +P Y + Q LH L E+ + N F+
Sbjct: 35 KVYNGEMFTVNEHIDRLYASAEKIRITIP---YTKDKFHQLLHELVEKNELNTGHIYFQV 91
Query: 91 GPGKS 95
G S
Sbjct: 92 TRGTS 96
>pdb|1G2W|A Chain A, E177s Mutant Of The Pyridoxal-5'-phosphate Enzyme
D-amino Acid Aminotransferase
pdb|1G2W|B Chain B, E177s Mutant Of The Pyridoxal-5'-phosphate Enzyme
D-amino Acid Aminotransferase
Length = 282
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Query: 31 KIYRGENKEVSLSVSSLFRDANHIRRQLPKQIYKPVCWEQTLHILYERPQGNHFPRTFEC 90
K+Y GE V+ + L+ A IR +P Y + Q LH L E+ + N F+
Sbjct: 35 KVYNGEMFTVNEHIDRLYASAEKIRITIP---YTKDKFHQLLHELVEKNELNTGHIYFQV 91
Query: 91 GPGKS 95
G S
Sbjct: 92 TRGTS 96
>pdb|3LQS|A Chain A, Complex Structure Of D-Amino Acid Aminotransferase And
4-Amino-4,5- Dihydro-Thiophenecarboxylic Acid (Adta)
pdb|3LQS|B Chain B, Complex Structure Of D-Amino Acid Aminotransferase And
4-Amino-4,5- Dihydro-Thiophenecarboxylic Acid (Adta)
Length = 280
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Query: 31 KIYRGENKEVSLSVSSLFRDANHIRRQLPKQIYKPVCWEQTLHILYERPQGNHFPRTFEC 90
K+Y GE V+ + L+ A IR +P Y + Q LH L E+ + N F+
Sbjct: 35 KVYNGEMFTVNEHIDRLYASAEKIRITIP---YTKDKFHQLLHELVEKNELNTGHIYFQV 91
Query: 91 GPGKS 95
G S
Sbjct: 92 TRGTS 96
>pdb|1K8W|A Chain A, Crystal Structure Of The E. Coli Pseudouridine Synthase
Trub Bound To A T Stem-Loop Rna
Length = 327
Score = 25.8 bits (55), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 73 HILYERPQGNHFPRTFECGPGKSLVTILNQVNKKAG 108
+L+ R +GN C G + TI++ + +K G
Sbjct: 170 ELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKLG 205
>pdb|1ZL3|A Chain A, Coupling Of Active Site Motions And Rna Binding
Length = 327
Score = 25.8 bits (55), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 73 HILYERPQGNHFPRTFECGPGKSLVTILNQVNKKAG 108
+L+ R +GN C G + TI++ + +K G
Sbjct: 170 ELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKLG 205
>pdb|1R3F|A Chain A, Crystal Structure Of Trna Pseudouridine Synthase Trub And
Its Rna Complex: Rna-Protein Recognition Through A
Combination Of Rigid Docking And Induced Fit
Length = 314
Score = 25.4 bits (54), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 73 HILYERPQGNHFPRTFECGPGKSLVTILNQVNKKAG 108
+L+ R +GN C G + TI++ + +K G
Sbjct: 157 ELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKLG 192
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,467,386
Number of Sequences: 62578
Number of extensions: 134047
Number of successful extensions: 290
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 272
Number of HSP's gapped (non-prelim): 20
length of query: 116
length of database: 14,973,337
effective HSP length: 79
effective length of query: 37
effective length of database: 10,029,675
effective search space: 371097975
effective search space used: 371097975
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)