BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13429
(116 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8T3L6|FABD_DROME Probable malonyl-CoA-acyl carrier protein transacylase,
mitochondrial OS=Drosophila melanogaster GN=beg PE=2
SV=2
Length = 379
Score = 117 bits (294), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 62/114 (54%), Positives = 70/114 (61%), Gaps = 15/114 (13%)
Query: 1 MVPAVEPFALALKKATINDMIIPVHSNVDGKIYRGENKEVSLSVSSLFRDANHIRRQLPK 60
M AVEPF ALK + D +I V+SNVDGK YR A HI QLPK
Sbjct: 279 MQSAVEPFTKALKTVRLQDPVIRVYSNVDGKPYR---------------HAKHILTQLPK 323
Query: 61 QIYKPVCWEQTLHILYERPQGNHFPRTFECGPGKSLVTILNQVNKKAGDSAAKV 114
QI +PV WEQTLH +YER QG FPRTFECGPGK LV +L +VN KA S+ V
Sbjct: 324 QIVRPVKWEQTLHEMYERKQGVDFPRTFECGPGKGLVQVLEKVNAKAAQSSFNV 377
>sp|Q8IVS2|FABD_HUMAN Malonyl-CoA-acyl carrier protein transacylase, mitochondrial
OS=Homo sapiens GN=MCAT PE=1 SV=2
Length = 390
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 59/114 (51%), Gaps = 15/114 (13%)
Query: 1 MVPAVEPFALALKKATINDMIIPVHSNVDGKIYRGENKEVSLSVSSLFRDANHIRRQLPK 60
M PAVEP ALK I ++ V+SNV YR HI + L +
Sbjct: 274 MEPAVEPLTQALKAVDIKKPLVSVYSNVHAHRYR---------------HPGHIHKLLAQ 318
Query: 61 QIYKPVCWEQTLHILYERPQGNHFPRTFECGPGKSLVTILNQVNKKAGDSAAKV 114
Q+ PV WEQT+H +YER +G FP+TFE GPG+ L IL N +A S + V
Sbjct: 319 QLVSPVKWEQTMHAIYERKKGRGFPQTFEVGPGRQLGAILKSCNMQAWKSYSAV 372
>sp|Q8R3F5|FABD_MOUSE Malonyl-CoA-acyl carrier protein transacylase, mitochondrial OS=Mus
musculus GN=Mcat PE=2 SV=3
Length = 381
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 60/114 (52%), Gaps = 15/114 (13%)
Query: 1 MVPAVEPFALALKKATINDMIIPVHSNVDGKIYRGENKEVSLSVSSLFRDANHIRRQLPK 60
M PAV+P L I ++ VHSNV G+ Y HIR+ L +
Sbjct: 272 MEPAVDPLMKVLGSINIKKPLVAVHSNVSGQKYT---------------HPQHIRKLLGQ 316
Query: 61 QIYKPVCWEQTLHILYERPQGNHFPRTFECGPGKSLVTILNQVNKKAGDSAAKV 114
Q+ PV WEQT+H +YER +G FP T+E GPG+ L +IL N++A S + V
Sbjct: 317 QVVSPVKWEQTMHSIYERKKGMEFPSTYEVGPGQQLGSILKCCNRQAWKSYSHV 370
>sp|P0AAI9|FABD_ECOLI Malonyl CoA-acyl carrier protein transacylase OS=Escherichia coli
(strain K12) GN=fabD PE=1 SV=2
Length = 309
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 49/115 (42%), Gaps = 19/115 (16%)
Query: 1 MVPAVEPFALALKKATINDMIIPVHSNVDGKIYRGENKEVSLSVSSLFRDANHIRRQLPK 60
M PA + A+ L K T N +PV +NVD K + + IR L +
Sbjct: 205 MKPAADKLAVELAKITFNAPTVPVVNNVDVKCE---------------TNGDAIRDALVR 249
Query: 61 QIYKPVCWEQTLHILYERPQGNHFPRTFECGPGKSLVTILNQVNKKAGDSAAKVP 115
Q+Y PV W +++ Y QG +E GPGK L + ++ SA P
Sbjct: 250 QLYNPVQWTKSVE--YMAAQG--VEHLYEVGPGKVLTGLTKRIVDTLTASALNEP 300
>sp|P0AAJ0|FABD_ECOL6 Malonyl CoA-acyl carrier protein transacylase OS=Escherichia coli
O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=fabD PE=3
SV=2
Length = 309
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 49/115 (42%), Gaps = 19/115 (16%)
Query: 1 MVPAVEPFALALKKATINDMIIPVHSNVDGKIYRGENKEVSLSVSSLFRDANHIRRQLPK 60
M PA + A+ L K T N +PV +NVD K + + IR L +
Sbjct: 205 MKPAADKLAVELAKITFNAPTVPVVNNVDVKCE---------------TNGDAIRDALVR 249
Query: 61 QIYKPVCWEQTLHILYERPQGNHFPRTFECGPGKSLVTILNQVNKKAGDSAAKVP 115
Q+Y PV W +++ Y QG +E GPGK L + ++ SA P
Sbjct: 250 QLYNPVQWTKSVE--YMAAQG--VEHLYEVGPGKVLTGLTKRIVDTLTASALNEP 300
>sp|Q8X8I7|FABD_ECO57 Malonyl CoA-acyl carrier protein transacylase OS=Escherichia coli
O157:H7 GN=fabD PE=3 SV=3
Length = 309
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 49/115 (42%), Gaps = 19/115 (16%)
Query: 1 MVPAVEPFALALKKATINDMIIPVHSNVDGKIYRGENKEVSLSVSSLFRDANHIRRQLPK 60
M PA + A+ L K T N +PV +NVD K + + IR L +
Sbjct: 205 MKPAADKLAVELAKITFNAPTVPVVNNVDVKCE---------------TNGDAIRDALVR 249
Query: 61 QIYKPVCWEQTLHILYERPQGNHFPRTFECGPGKSLVTILNQVNKKAGDSAAKVP 115
Q+Y PV W +++ Y QG +E GPGK L + ++ SA P
Sbjct: 250 QLYNPVQWTKSVE--YMAAQG--VEHLYEVGPGKVLTGLTKRIVDTLTASALNEP 300
>sp|O85140|FABD_SALTY Malonyl CoA-acyl carrier protein transacylase OS=Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
GN=fabD PE=1 SV=3
Length = 309
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 49/116 (42%), Gaps = 19/116 (16%)
Query: 1 MVPAVEPFALALKKATINDMIIPVHSNVDGKIYRGENKEVSLSVSSLFRDANHIRRQLPK 60
M PA + A+ L K T + +PV +NVD K DA IR L +
Sbjct: 205 MKPAADKLAVELAKITFSAPTVPVVNNVDVKCE---------------TDAAAIRDALVR 249
Query: 61 QIYKPVCWEQTLHILYERPQGNHFPRTFECGPGKSLVTILNQVNKKAGDSAAKVPC 116
Q+Y PV W +++ + QG +E GPGK L + ++ SA P
Sbjct: 250 QLYNPVQWTKSVEFI--AAQG--VEHLYEVGPGKVLTGLTKRIVDTLTASALNEPA 301
>sp|P71019|FABD_BACSU Malonyl CoA-acyl carrier protein transacylase OS=Bacillus subtilis
(strain 168) GN=fabD PE=3 SV=2
Length = 317
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 45/106 (42%), Gaps = 19/106 (17%)
Query: 1 MVPAVEPFALALKKATINDMIIPVHSNVDGKIYRGENKEVSLSVSSLFRDANHIRRQLPK 60
M PA E L I D +PV SNV + + I+ +L +
Sbjct: 205 MKPAAEKLKEVLDACDIKDADVPVISNVSADV---------------MTEKADIKEKLIE 249
Query: 61 QIYKPVCWEQTLHILYERPQGNHFPRTFECGPGKSLVTILNQVNKK 106
Q+Y PV +E++++ L E GPGK L ++ +VN++
Sbjct: 250 QLYSPVRFEESINKLI----AEGVTTFIEIGPGKVLSGLVKKVNRR 291
>sp|P43712|FABD_HAEIN Malonyl CoA-acyl carrier protein transacylase OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
GN=fabD PE=3 SV=1
Length = 312
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 47/110 (42%), Gaps = 24/110 (21%)
Query: 1 MVPAVEPFALALKKATINDMIIPVHSNVDGKIYRGENKEVSLSVSSLFRDANHIRRQLPK 60
M PA E A+ L+ IN I V +NVD K + IR L +
Sbjct: 206 MKPAAEQLAVTLENIQINTPTISVLNNVDVKAE---------------TEGTEIRTALVR 250
Query: 61 QIYKPVCWEQTLHILYERPQGNHFPRTFECGPGKSLVTILNQVNKK-AGD 109
Q+Y PV W +T+ E+ + E GPGK +LN + K+ GD
Sbjct: 251 QLYSPVRWTETV----EKMAQDGVLVLAEVGPGK----VLNGLTKRIVGD 292
>sp|O13698|FABD_SCHPO Malonyl CoA-acyl carrier protein transacylase, mitochondrial
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=mct1 PE=3 SV=1
Length = 318
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 17/82 (20%)
Query: 21 IIPVHSNVDGKIYRGENKEVSLSVSSLFRDANHIRRQLPKQIYKPVCWEQTLHILYERPQ 80
+P+ SNV ++Y D IRRQL Q ++PV ++ L + +
Sbjct: 245 FLPIISNVTAELYPA--------------DEEDIRRQLLLQCFRPVLFKNCLKTVKSKYG 290
Query: 81 GNHFPRTFECGPGKSLVTILNQ 102
N F + GPG ++ +I Q
Sbjct: 291 ANLF---YAYGPGTTMQSIAKQ 309
>sp|P73242|FABD_SYNY3 Malonyl CoA-acyl carrier protein transacylase OS=Synechocystis sp.
(strain PCC 6803 / Kazusa) GN=fabD PE=3 SV=1
Length = 293
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 19/99 (19%)
Query: 1 MVPAVEPFALALKKATINDMIIPVHSNVDGKIYRGENKEVSLSVSSLFRDANHIRRQLPK 60
M + FA L ND +PV SNVD S ++ + ++ +L +
Sbjct: 192 MAQPSQSFAQTLTACHFNDATVPVLSNVD---------------PSPTQNGDRLKEKLIQ 236
Query: 61 QIYKPVCWEQTLHILYERPQGNHFPRTFECGPGKSLVTI 99
Q+ V W +T+ L E ++ +E GPGK L +
Sbjct: 237 QMTGSVRWRETMVNLGEIGATDY----WEVGPGKVLTGL 271
>sp|Q55EL3|UCKA_DICDI Uridine-cytidine kinase A OS=Dictyostelium discoideum GN=udkA PE=3
SV=1
Length = 499
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 7/96 (7%)
Query: 14 KATINDMIIPVHSNVDGKIYRGENKEVSLSVSSLFRDANHIRRQLPKQIYKPVCWEQTLH 73
K + +D IIP+ D + RG + V++++ + NHIR +L ++ + P Q
Sbjct: 230 KPSFDDYIIPLKKYADIIVPRGSDNIVAINLLT-----NHIRLKLKERGFDPEKTAQLDL 284
Query: 74 ILYERPQGNHFPRTFECGPGKSLVTILNQVNKKAGD 109
E P H + E K++++IL + K GD
Sbjct: 285 EGLELPSSIHVIK--ETNQIKAMLSILRNKDTKVGD 318
>sp|A7Z4Y0|BAEE_BACA2 Polyketide biosynthesis protein BaeE OS=Bacillus amyloliquefaciens
(strain FZB42) GN=baeE PE=1 SV=1
Length = 746
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 45/108 (41%), Gaps = 22/108 (20%)
Query: 1 MVPAVEPFALALKKATINDMIIPVHSNVDGKIYRGENKEVSLSVSSLFRDANHIRRQLPK 60
M+ A E F+ ++ + IPV SNV + Y E +E ++ L
Sbjct: 195 MLEAKEEFSRFIESFHFKPLSIPVISNVTARPY--EQRE--------------LKETLTG 238
Query: 61 QIYKPVCWEQTLHILYERPQGNHFPRTF-ECGPGKSLVTILNQVNKKA 107
QI V W ++ L R +F E GPGK L ++ ++ +A
Sbjct: 239 QITGSVNWTDSIRFLMGRKN-----MSFEEIGPGKVLTGLIQRITAEA 281
>sp|Q7A124|FABD_STAAW Malonyl CoA-acyl carrier protein transacylase OS=Staphylococcus
aureus (strain MW2) GN=fabD PE=3 SV=1
Length = 308
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Query: 50 DANHIRRQLPKQIYKPVCWEQTLHILYERPQG-NHFPRTFECGPGKSLVTILNQVNK 105
D I+ + KQ+Y PV + + L + QG +HF E GPGK L ++ ++N+
Sbjct: 237 DKEVIKSNMVKQLYSPVQFINSTEWLID--QGVDHF---IEIGPGKVLSGLIKKINR 288
>sp|Q7A5Z3|FABD_STAAN Malonyl CoA-acyl carrier protein transacylase OS=Staphylococcus
aureus (strain N315) GN=fabD PE=1 SV=1
Length = 308
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Query: 50 DANHIRRQLPKQIYKPVCWEQTLHILYERPQG-NHFPRTFECGPGKSLVTILNQVNK 105
D I+ + KQ+Y PV + + L + QG +HF E GPGK L ++ ++N+
Sbjct: 237 DKEVIKSNMVKQLYSPVQFINSTEWLID--QGVDHF---IEIGPGKVLSGLIKKINR 288
>sp|Q99UN8|FABD_STAAM Malonyl CoA-acyl carrier protein transacylase OS=Staphylococcus
aureus (strain Mu50 / ATCC 700699) GN=fabD PE=1 SV=1
Length = 308
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Query: 50 DANHIRRQLPKQIYKPVCWEQTLHILYERPQG-NHFPRTFECGPGKSLVTILNQVNK 105
D I+ + KQ+Y PV + + L + QG +HF E GPGK L ++ ++N+
Sbjct: 237 DKEVIKSNMVKQLYSPVQFINSTEWLID--QGVDHF---IEIGPGKVLSGLIKKINR 288
>sp|Q6GHK5|FABD_STAAR Malonyl CoA-acyl carrier protein transacylase OS=Staphylococcus
aureus (strain MRSA252) GN=fabD PE=3 SV=1
Length = 308
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 23/102 (22%)
Query: 6 EPFALALKKATINDMIIPVHSNVDGKIYRGE-NKEVSLSVSSLFRDANHIRRQLPKQIYK 64
E F+ + + D PV NV+ +GE +KEV I+ + KQ+Y
Sbjct: 208 EDFSSYINQFEWRDAKFPVVQNVNA---QGETDKEV-------------IKSNMVKQLYS 251
Query: 65 PVCWEQTLHILYERPQG-NHFPRTFECGPGKSLVTILNQVNK 105
PV + + L + QG +HF E GPGK L ++ ++N+
Sbjct: 252 PVQFINSTEWLID--QGVDHF---IEIGPGKVLSGLIKKINR 288
>sp|Q93QD4|FABD_STAAU Malonyl CoA-acyl carrier protein transacylase OS=Staphylococcus
aureus GN=fabD PE=3 SV=1
Length = 308
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Query: 50 DANHIRRQLPKQIYKPVCWEQTLHILYERPQG-NHFPRTFECGPGKSLVTILNQVNK 105
D I+ + KQ+Y PV + + L + QG +HF E GPGK L ++ ++N+
Sbjct: 237 DKEVIKSNMVKQLYSPVQFINSTEWLID--QGVDHF---IEIGPGKVLSGLIKKINR 288
>sp|Q5HGK3|FABD_STAAC Malonyl CoA-acyl carrier protein transacylase OS=Staphylococcus
aureus (strain COL) GN=fabD PE=3 SV=1
Length = 308
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Query: 50 DANHIRRQLPKQIYKPVCWEQTLHILYERPQG-NHFPRTFECGPGKSLVTILNQVNK 105
D I+ + KQ+Y PV + + L + QG +HF E GPGK L ++ ++N+
Sbjct: 237 DKEVIKSNMVKQLYSPVQFINSTEWLID--QGVDHF---IEIGPGKVLSGLIKKINR 288
>sp|Q9R9J2|FENF_BACIU Malonyl CoA-acyl carrier protein transacylase OS=Bacillus subtilis
GN=fenF PE=1 SV=1
Length = 400
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 38/104 (36%), Gaps = 19/104 (18%)
Query: 1 MVPAVEPFALALKKATINDMIIPVHSNVDGKIYRGENKEVSLSVSSLFRDANHIRRQLPK 60
M A E F AL + + D P+ SNV Y + + +R L
Sbjct: 205 MRSASEQFQTALNQYSFRDAEWPIISNVTAIPYN---------------NGHSVREHLQT 249
Query: 61 QIYKPVCWEQTLHILYERPQGNHFPRTFECGPGKSLVTILNQVN 104
+ PV W +++H L E GP LV +L ++
Sbjct: 250 HMTMPVRWAESMHYLLLHG----VTEVIEMGPKNVLVGLLKKIT 289
>sp|Q8K9J6|FABD_BUCAP Malonyl CoA-acyl carrier protein transacylase OS=Buchnera
aphidicola subsp. Schizaphis graminum (strain Sg)
GN=fabD PE=3 SV=1
Length = 310
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 43/115 (37%), Gaps = 28/115 (24%)
Query: 1 MVPAVEPFALALKKATINDMIIPVHSNVDGKIYRGENKEVSLSVSSLFRDANHIRRQLPK 60
M P E LK I IPV +NVD + E K I++ L +
Sbjct: 205 MKPVSEQIKYLLKSIKIKSPQIPVINNVDVICEKNEKK---------------IKKALVR 249
Query: 61 QIYKPVCWEQTLHILYERPQGNHFPRTFECGPGKSL---------VTILNQVNKK 106
Q Y V W++ + ++ + E GP K L +T+LN N K
Sbjct: 250 QFYSTVRWKEIIDLI----KSKKIFTMLEIGPNKILSNLIKKNDNITVLNTNNLK 300
>sp|B7UX15|NAPA_PSEA8 Periplasmic nitrate reductase OS=Pseudomonas aeruginosa (strain
LESB58) GN=napA PE=3 SV=1
Length = 834
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/73 (20%), Positives = 33/73 (45%), Gaps = 9/73 (12%)
Query: 15 ATINDMIIPVHSNVDGKIYRGENKEVSLSVSSLFRDANHIRRQLPKQI---------YKP 65
AT + ++ H ++ ++ RG N +S + ++ + R L + ++P
Sbjct: 60 ATRDGQVVATHGDIKAEVNRGINCVKGYFLSKIMYGSDRLTRPLLRMKDGKFDKQGEFQP 119
Query: 66 VCWEQTLHILYER 78
+ WEQ I+ E+
Sbjct: 120 ISWEQAFDIMAEK 132
>sp|Q9I4G3|NAPA_PSEAE Periplasmic nitrate reductase OS=Pseudomonas aeruginosa (strain
ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=napA
PE=3 SV=1
Length = 829
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/73 (20%), Positives = 33/73 (45%), Gaps = 9/73 (12%)
Query: 15 ATINDMIIPVHSNVDGKIYRGENKEVSLSVSSLFRDANHIRRQLPKQI---------YKP 65
AT + ++ H ++ ++ RG N +S + ++ + R L + ++P
Sbjct: 55 ATRDGQVVATHGDIKAEVNRGINCVKGYFLSKIMYGSDRLTRPLLRMKDGKFDKQGEFQP 114
Query: 66 VCWEQTLHILYER 78
+ WEQ I+ E+
Sbjct: 115 ISWEQAFDIMAEK 127
>sp|A6V924|NAPA_PSEA7 Periplasmic nitrate reductase OS=Pseudomonas aeruginosa (strain
PA7) GN=napA PE=3 SV=1
Length = 834
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/73 (20%), Positives = 33/73 (45%), Gaps = 9/73 (12%)
Query: 15 ATINDMIIPVHSNVDGKIYRGENKEVSLSVSSLFRDANHIRRQLPKQI---------YKP 65
AT + ++ H ++ ++ RG N +S + ++ + R L + ++P
Sbjct: 60 ATRDGQVVATHGDIKAEVNRGINCVKGYFLSKIMYGSDRLTRPLLRMKDGKFDKQGEFQP 119
Query: 66 VCWEQTLHILYER 78
+ WEQ I+ E+
Sbjct: 120 ISWEQAFDIMAEK 132
>sp|Q02IZ4|NAPA_PSEAB Periplasmic nitrate reductase OS=Pseudomonas aeruginosa (strain
UCBPP-PA14) GN=napA PE=3 SV=1
Length = 834
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/73 (20%), Positives = 33/73 (45%), Gaps = 9/73 (12%)
Query: 15 ATINDMIIPVHSNVDGKIYRGENKEVSLSVSSLFRDANHIRRQLPKQI---------YKP 65
AT + ++ H ++ ++ RG N +S + ++ + R L + ++P
Sbjct: 60 ATRDGQVVATHGDIKAEVNRGINCVKGYFLSKIMYGSDRLTRPLLRMKDGKFDKQGEFQP 119
Query: 66 VCWEQTLHILYER 78
+ WEQ I+ E+
Sbjct: 120 ISWEQAFDIMAEK 132
>sp|A0R0B2|FABD_MYCS2 Malonyl CoA-acyl carrier protein transacylase OS=Mycobacterium
smegmatis (strain ATCC 700084 / mc(2)155) GN=fabD PE=1
SV=1
Length = 290
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 40/99 (40%), Gaps = 15/99 (15%)
Query: 1 MVPAVEPFALALKKATINDMIIPVHSNVDGKIYRGENKEVSLSVSSLFRDANHIRRQLPK 60
M A++ +A A + T ++ + SN DG+ V+S A +L
Sbjct: 182 MASALDGYAAAAQSVTTSEPTATLLSNADGQ-----------PVAS----AADAMEKLVA 226
Query: 61 QIYKPVCWEQTLHILYERPQGNHFPRTFECGPGKSLVTI 99
Q+ KPV W+ L +R Q E P +LV I
Sbjct: 227 QLTKPVRWDLCTATLRDRFQNAESAGIVEFPPAGTLVGI 265
>sp|Q2G9X9|PUR5_NOVAD Phosphoribosylformylglycinamidine cyclo-ligase OS=Novosphingobium
aromaticivorans (strain DSM 12444) GN=purM PE=3 SV=1
Length = 368
Score = 29.3 bits (64), Expect = 7.2, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 7/51 (13%)
Query: 53 HIRRQLPKQIYKPV---CWEQTLHILYERPQGNHFP----RTFECGPGKSL 96
++ R LP+ ++ + WEQ+ + + + QGN P RTF CG G L
Sbjct: 263 NVPRVLPRGLHARIDADSWEQSRLMAFLQAQGNIEPEEMARTFNCGIGMIL 313
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.136 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,621,563
Number of Sequences: 539616
Number of extensions: 1680485
Number of successful extensions: 3481
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 3467
Number of HSP's gapped (non-prelim): 28
length of query: 116
length of database: 191,569,459
effective HSP length: 84
effective length of query: 32
effective length of database: 146,241,715
effective search space: 4679734880
effective search space used: 4679734880
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)