Query psy13429
Match_columns 116
No_of_seqs 184 out of 1027
Neff 6.2
Searched_HMMs 46136
Date Fri Aug 16 19:14:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13429.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13429hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2926|consensus 99.8 3.6E-20 7.7E-25 149.1 8.3 94 1-110 273-366 (386)
2 COG0331 FabD (acyl-carrier-pro 99.8 3E-19 6.6E-24 142.5 8.8 92 1-111 206-297 (310)
3 PF00698 Acyl_transf_1: Acyl t 99.8 2.6E-19 5.7E-24 141.0 8.1 87 1-106 196-282 (318)
4 PLN02752 [acyl-carrier protein 99.8 9.3E-19 2E-23 139.6 8.9 88 1-107 249-336 (343)
5 TIGR03131 malonate_mdcH malona 99.8 3.8E-18 8.3E-23 132.7 8.8 88 1-107 192-279 (295)
6 TIGR00128 fabD malonyl CoA-acy 99.7 8.7E-18 1.9E-22 129.3 9.3 87 1-106 203-289 (290)
7 smart00827 PKS_AT Acyl transfe 99.7 2.9E-17 6.3E-22 127.0 7.8 89 1-108 197-287 (298)
8 TIGR02813 omega_3_PfaA polyket 99.7 1.5E-16 3.2E-21 151.8 9.0 90 1-108 795-884 (2582)
9 TIGR02816 pfaB_fam PfaB family 99.6 7.6E-15 1.6E-19 124.5 8.3 75 19-107 414-490 (538)
10 COG3321 Polyketide synthase mo 99.1 1.6E-10 3.5E-15 104.5 7.0 88 1-107 726-813 (1061)
11 KOG1202|consensus 94.0 0.084 1.8E-06 50.0 4.7 86 1-105 696-785 (2376)
12 COG0030 KsgA Dimethyladenosine 64.5 5.9 0.00013 31.3 2.4 16 85-100 32-48 (259)
13 PF13489 Methyltransf_23: Meth 50.1 47 0.001 22.3 4.8 32 67-100 8-40 (161)
14 cd04436 DEP_fRgd2 DEP (Disheve 39.8 60 0.0013 21.5 3.8 43 5-64 3-45 (84)
15 KOG0820|consensus 38.3 17 0.00037 29.6 1.2 25 69-94 44-69 (315)
16 KOG4479|consensus 38.1 12 0.00025 25.0 0.2 26 88-113 29-54 (92)
17 PF13409 GST_N_2: Glutathione 37.2 43 0.00092 20.2 2.7 27 20-61 44-70 (70)
18 COG3963 Phospholipid N-methylt 36.1 15 0.00032 28.0 0.5 26 56-94 34-59 (194)
19 TIGR03815 CpaE_hom_Actino heli 35.2 1.3E+02 0.0028 23.6 5.8 50 50-105 271-320 (322)
20 PF03190 Thioredox_DsbH: Prote 29.9 53 0.0012 24.2 2.6 35 55-93 9-47 (163)
21 PF00398 RrnaAD: Ribosomal RNA 29.1 33 0.00071 26.4 1.4 17 85-101 32-49 (262)
22 PF13417 GST_N_3: Glutathione 28.9 66 0.0014 19.4 2.6 29 20-64 45-73 (75)
23 PRK02261 methylaspartate mutas 27.3 2E+02 0.0043 20.1 5.1 76 11-107 46-134 (137)
24 cd02072 Glm_B12_BD B12 binding 25.0 2E+02 0.0043 20.3 4.7 67 16-103 47-126 (128)
25 TIGR00755 ksgA dimethyladenosi 22.9 78 0.0017 24.0 2.5 17 85-101 31-48 (253)
26 PF10294 Methyltransf_16: Puta 22.2 47 0.001 23.9 1.1 20 85-104 47-66 (173)
27 KOG2368|consensus 22.1 1.4E+02 0.0031 23.9 3.8 85 4-116 132-220 (316)
28 COG4963 CpaE Flp pilus assembl 21.5 3.8E+02 0.0083 22.4 6.3 85 5-107 257-341 (366)
No 1
>KOG2926|consensus
Probab=99.82 E-value=3.6e-20 Score=149.06 Aligned_cols=94 Identities=56% Similarity=0.897 Sum_probs=88.3
Q ss_pred CccchHHHHHHHhcCCCCCCCccEEeCCCCccccccccchhhhcccccCCHHHHHhHHHHhhcCCcCHHHHHHHHHhCCC
Q psy13429 1 MVPAVEPFALALKKATINDMIIPVHSNVDGKIYRGENKEVSLSVSSLFRDANHIRRQLPKQIYKPVCWEQTLHILYERPQ 80 (116)
Q Consensus 1 M~pa~~~~~~~l~~~~~~~p~ipviSnv~g~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ql~~PV~w~~~i~~l~~~~~ 80 (116)
|+||+++|.++|+.+.++.|.+|||||++|++++ ++.+|+..|++|+.+||+|+++++++.++ +
T Consensus 273 MepAvepl~~Al~~vei~~p~~pViSNvdg~~~~---------------~~~hi~~~l~kQ~~rPV~we~~~~ti~sk-~ 336 (386)
T KOG2926|consen 273 MEPAVEPLTKALKAVEIKNPVIPVISNVDGKPYR---------------DPGHILKQLAKQIVRPVQWEQTLKTIYSK-Q 336 (386)
T ss_pred hhhhHHHHHHHHHHHHhcCCCcceeecCCCcccC---------------ChHHHHHHHHHHhcCchhHHHHHHHHHhc-C
Confidence 8999999999999999999999999999999999 89999999999999999999999999987 5
Q ss_pred CCccCcEEEeCCCHHHHHHHHHHhhhcCCC
Q psy13429 81 GNHFPRTFECGPGKSLVTILNQVNKKAGDS 110 (116)
Q Consensus 81 g~~f~~~iEiGPg~~L~~l~k~~~~~~~~~ 110 (116)
|+-|++++|+|||++|.+++++..+++...
T Consensus 337 ~~g~~~sye~GPG~~l~~ilk~~~~~a~~~ 366 (386)
T KOG2926|consen 337 GVGFPRSYEVGPGRVLVAILKRNNPQADFS 366 (386)
T ss_pred CCCCCceEeeCCcHHHHHHHHHhCchhhhh
Confidence 777788999999999999999998876553
No 2
>COG0331 FabD (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]
Probab=99.79 E-value=3e-19 Score=142.53 Aligned_cols=92 Identities=40% Similarity=0.580 Sum_probs=85.8
Q ss_pred CccchHHHHHHHhcCCCCCCCccEEeCCCCccccccccchhhhcccccCCHHHHHhHHHHhhcCCcCHHHHHHHHHhCCC
Q psy13429 1 MVPAVEPFALALKKATINDMIIPVHSNVDGKIYRGENKEVSLSVSSLFRDANHIRRQLPKQIYKPVCWEQTLHILYERPQ 80 (116)
Q Consensus 1 M~pa~~~~~~~l~~~~~~~p~ipviSnv~g~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ql~~PV~w~~~i~~l~~~~~ 80 (116)
|+|+.++|+..|..+.|++|.+|+++|+++.++. +.+.+++.|.+|+++||+|.+++..|.+.
T Consensus 206 m~pa~~~~~~~l~~~~~~~~~ipvi~n~~~~~~~---------------~~~~i~~~L~~q~~~pVrW~etv~~l~~~-- 268 (310)
T COG0331 206 MKPAADELAEALEKVRFSDPLVPVISNVDAKPVL---------------DGEEIRELLAKQLTSPVRWTETVETLKAD-- 268 (310)
T ss_pred hHHHHHHHHHHHHhcCCCCccceeeecccccccc---------------CHHHHHHHHHHHhcCCeeHHHHHHHHHhc--
Confidence 7899999999999999999999999999999987 89999999999999999999999999987
Q ss_pred CCccCcEEEeCCCHHHHHHHHHHhhhcCCCc
Q psy13429 81 GNHFPRTFECGPGKSLVTILNQVNKKAGDSA 111 (116)
Q Consensus 81 g~~f~~~iEiGPg~~L~~l~k~~~~~~~~~~ 111 (116)
|+ +.|+|+|||++|++|+|++.++.+...
T Consensus 269 gv--~~~~EiGpg~vL~gL~kri~~~~~~~~ 297 (310)
T COG0331 269 GV--TRFVEIGPGKVLTGLAKRILKGLGVRA 297 (310)
T ss_pred Cc--eEEEEeCCcHHHHHHHHhhcCCCCcee
Confidence 89 555999999999999999998876544
No 3
>PF00698 Acyl_transf_1: Acyl transferase domain; InterPro: IPR014043 Enzymes like bacterial malonyl CoA-acly carrier protein transacylase (2.3.1.39 from EC) and eukaryotic fatty acid synthase (2.3.1.85 from EC) that are involved in fatty acid biosynthesis belong to this group. Also included are the polyketide synthases 6-methylsalicylic acid synthase (2.3.1 from EC), a multifunctional enzyme that involved in the biosynthesis of patulin and conidial green pigment synthase (2.3.1 from EC).; PDB: 3HHD_C 2JFD_D 2JFK_A 3G87_A 3IM9_A 2QO3_B 3IM8_A 3EZO_A 2QJ3_A 2QC3_A ....
Probab=99.79 E-value=2.6e-19 Score=141.04 Aligned_cols=87 Identities=33% Similarity=0.537 Sum_probs=81.5
Q ss_pred CccchHHHHHHHhcCCCCCCCccEEeCCCCccccccccchhhhcccccCCHHHHHhHHHHhhcCCcCHHHHHHHHHhCCC
Q psy13429 1 MVPAVEPFALALKKATINDMIIPVHSNVDGKIYRGENKEVSLSVSSLFRDANHIRRQLPKQIYKPVCWEQTLHILYERPQ 80 (116)
Q Consensus 1 M~pa~~~~~~~l~~~~~~~p~ipviSnv~g~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ql~~PV~w~~~i~~l~~~~~ 80 (116)
|+|+.++|++.++.+.+++|++|++||++|+++. +.+..++||.+|+++||+|.++++.|.+.
T Consensus 196 m~~~~~~~~~~l~~~~~~~p~ip~~S~~~g~~~~---------------~~~~~~~~~~~~l~~pV~f~~~v~~l~~~-- 258 (318)
T PF00698_consen 196 MEPAADEFREALESIEFRPPKIPVYSNVTGRPYD---------------DPELIAEYWARQLRSPVRFREAVEALYED-- 258 (318)
T ss_dssp GHHHHHHHHHHHHTSCSCCCSSEEEETTTSSBEH---------------SHHHHHHHHHHHHHSHEEHHHHHHHHHHT--
T ss_pred hhhhHHHHHhhhhccccccccccceeeccccccc---------------ccccchhHHHhccCCcCChHHHHHHHHhc--
Confidence 7899999999999999999999999999999997 77778999999999999999999999887
Q ss_pred CCccCcEEEeCCCHHHHHHHHHHhhh
Q psy13429 81 GNHFPRTFECGPGKSLVTILNQVNKK 106 (116)
Q Consensus 81 g~~f~~~iEiGPg~~L~~l~k~~~~~ 106 (116)
|+ +.|||+|||++|++++++++++
T Consensus 259 g~--~~fiEiGP~~~L~~~~~~~l~~ 282 (318)
T PF00698_consen 259 GV--RVFIEIGPGSVLTSLVKRILKS 282 (318)
T ss_dssp TE--EEEEEESSSSHHHHHHHHHSTS
T ss_pred CC--CEEEEeCchHHHHHHHHHHHhh
Confidence 88 5569999999999999999983
No 4
>PLN02752 [acyl-carrier protein] S-malonyltransferase
Probab=99.77 E-value=9.3e-19 Score=139.63 Aligned_cols=88 Identities=40% Similarity=0.644 Sum_probs=81.5
Q ss_pred CccchHHHHHHHhcCCCCCCCccEEeCCCCccccccccchhhhcccccCCHHHHHhHHHHhhcCCcCHHHHHHHHHhCCC
Q psy13429 1 MVPAVEPFALALKKATINDMIIPVHSNVDGKIYRGENKEVSLSVSSLFRDANHIRRQLPKQIYKPVCWEQTLHILYERPQ 80 (116)
Q Consensus 1 M~pa~~~~~~~l~~~~~~~p~ipviSnv~g~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ql~~PV~w~~~i~~l~~~~~ 80 (116)
|+|+.+.|.+.++.+.+++|++|++||++|+++. +.+.++++|.+|+++||+|.++++.|.+.
T Consensus 249 m~~~~~~l~~~l~~~~~~~p~ipviS~~tg~~~~---------------~~~~~~~~l~~~l~~PV~~~~~i~~l~~~-- 311 (343)
T PLN02752 249 MEPAVDALEAALAAVEIRTPRIPVISNVDAQPHS---------------DPATIKKILARQVTSPVQWETTVKTLLEK-- 311 (343)
T ss_pred HHHHHHHHHHHHhcCCCCCCCceEEEcCCCCccC---------------ChHHHHHHHHHHCcCCEEHHHHHHHHHHC--
Confidence 6788999999999999999999999999999998 77889999999999999999999999987
Q ss_pred CCccCcEEEeCCCHHHHHHHHHHhhhc
Q psy13429 81 GNHFPRTFECGPGKSLVTILNQVNKKA 107 (116)
Q Consensus 81 g~~f~~~iEiGPg~~L~~l~k~~~~~~ 107 (116)
|+ +.|||+|||++|++|++++.++.
T Consensus 312 g~--~~~iEiGP~~~L~~l~~~~~~~~ 336 (343)
T PLN02752 312 GL--EKSYELGPGKVIAGIVKRVDKGA 336 (343)
T ss_pred CC--CEEEEeCCcHHHHHHHHHhhCCC
Confidence 88 55699999999999999997654
No 5
>TIGR03131 malonate_mdcH malonate decarboxylase, epsilon subunit. Members of this protein family are the epsilon subunit of malonate decarboxylase. This subunit has malonyl-CoA/dephospho-CoA acyltransferase activity. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. The epsilon subunit is closely related to the malonyl CoA-acyl carrier protein (ACP) transacylase family described by TIGR00128, but acts on an ACP subunit of malonate decarboxylase that has an unusual coenzyme A derivative as its prothetic group.
Probab=99.75 E-value=3.8e-18 Score=132.73 Aligned_cols=88 Identities=34% Similarity=0.569 Sum_probs=81.3
Q ss_pred CccchHHHHHHHhcCCCCCCCccEEeCCCCccccccccchhhhcccccCCHHHHHhHHHHhhcCCcCHHHHHHHHHhCCC
Q psy13429 1 MVPAVEPFALALKKATINDMIIPVHSNVDGKIYRGENKEVSLSVSSLFRDANHIRRQLPKQIYKPVCWEQTLHILYERPQ 80 (116)
Q Consensus 1 M~pa~~~~~~~l~~~~~~~p~ipviSnv~g~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ql~~PV~w~~~i~~l~~~~~ 80 (116)
|+++.++|...++.+++++|++|++||++|+.+. +.+.+++||.+|+++||+|.++++.+.+.
T Consensus 192 ~~~~~~~~~~~l~~~~~~~~~ip~~S~~~g~~~~---------------~~~~~~~~~~~~l~~pV~~~~~i~~l~~~-- 254 (295)
T TIGR03131 192 LAKAAEQFAEALAEIPLAAPRLPYLSGIDARLVR---------------DAAQIRDDLARQIATPVDWHDCMQAAYER-- 254 (295)
T ss_pred HHHHHHHHHHHHhcCCCCCCCceEEECCCCeecC---------------CHHHHHHHHHHHhcCCCcHHHHHHHHHHc--
Confidence 6788999999999999999999999999999997 77888999999999999999999999987
Q ss_pred CCccCcEEEeCCCHHHHHHHHHHhhhc
Q psy13429 81 GNHFPRTFECGPGKSLVTILNQVNKKA 107 (116)
Q Consensus 81 g~~f~~~iEiGPg~~L~~l~k~~~~~~ 107 (116)
|+ +.|||+|||++|+++++++.++.
T Consensus 255 g~--~~~veiGp~~~l~~~~~~~~~~~ 279 (295)
T TIGR03131 255 GA--RLVIELGPGDVLTKLANEAFPEL 279 (295)
T ss_pred CC--CEEEEeCChHHHHHHHHHhcCCC
Confidence 88 55699999999999999998765
No 6
>TIGR00128 fabD malonyl CoA-acyl carrier protein transacylase. The seed alignment for this family of proteins contains a single member each from a number of bacterial species but also an additional pair of closely related, uncharacterized proteins from B. subtilis, one of which has a long C-terminal extension.
Probab=99.74 E-value=8.7e-18 Score=129.33 Aligned_cols=87 Identities=37% Similarity=0.651 Sum_probs=79.7
Q ss_pred CccchHHHHHHHhcCCCCCCCccEEeCCCCccccccccchhhhcccccCCHHHHHhHHHHhhcCCcCHHHHHHHHHhCCC
Q psy13429 1 MVPAVEPFALALKKATINDMIIPVHSNVDGKIYRGENKEVSLSVSSLFRDANHIRRQLPKQIYKPVCWEQTLHILYERPQ 80 (116)
Q Consensus 1 M~pa~~~~~~~l~~~~~~~p~ipviSnv~g~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ql~~PV~w~~~i~~l~~~~~ 80 (116)
|+++.+.|++.++.+.+++|++|++||++|+.+. +.+.++++|.+|+++||+|.++++.+.+.
T Consensus 203 l~~~~~~~~~~l~~~~~~~p~ipi~S~~~g~~~~---------------~~~~~~~~~~~~l~~pV~f~~~i~~l~~~-- 265 (290)
T TIGR00128 203 MKPAAEKFAETLEACQFNDPTVPVISNVDAKPYT---------------NGDRIKEKLSEQLTSPVRWTDSVEKLMAR-- 265 (290)
T ss_pred HHHHHHHHHHHHHcCCCCCCCccEEECCCCCccC---------------CHHHHHHHHHHHccCCccHHHHHHHHHHC--
Confidence 5678889999999999999999999999999997 67788999999999999999999999987
Q ss_pred CCccCcEEEeCCCHHHHHHHHHHhhh
Q psy13429 81 GNHFPRTFECGPGKSLVTILNQVNKK 106 (116)
Q Consensus 81 g~~f~~~iEiGPg~~L~~l~k~~~~~ 106 (116)
|+ +.|||+|||++|+++++++.++
T Consensus 266 g~--~~~ie~gp~~~l~~~~~~~~~~ 289 (290)
T TIGR00128 266 GV--TEFAEVGPGKVLTGLIKRIKND 289 (290)
T ss_pred CC--CEEEEECCchHHHHHHHHhcCC
Confidence 88 5569999999999999998654
No 7
>smart00827 PKS_AT Acyl transferase domain in polyketide synthase (PKS) enzymes.
Probab=99.71 E-value=2.9e-17 Score=127.04 Aligned_cols=89 Identities=26% Similarity=0.333 Sum_probs=79.5
Q ss_pred CccchHHHHHHHhcCCCCCCCccEEeCCCCccccccccchhhhcccccCCHHHH-HhHHHHhhcCCcCHHHHHHHHHh-C
Q psy13429 1 MVPAVEPFALALKKATINDMIIPVHSNVDGKIYRGENKEVSLSVSSLFRDANHI-RRQLPKQIYKPVCWEQTLHILYE-R 78 (116)
Q Consensus 1 M~pa~~~~~~~l~~~~~~~p~ipviSnv~g~~~~~~~~~~~~~~~~~~~~~~~i-~~~l~~ql~~PV~w~~~i~~l~~-~ 78 (116)
|+++.+.|+..++.+.+.+|++|++||++|+++. +.+.+ +++|.+|+++||+|.++++.+.+ .
T Consensus 197 ~~~~~~~~~~~l~~~~~~~~~~pv~S~~~g~~~~---------------~~~~~~~~~l~~~l~~pV~~~~~i~~l~~~~ 261 (298)
T smart00827 197 MDPILDEFREALAGITPRPPRIPFVSTVTGELID---------------GAELDDAEYWVRNLREPVRFADAVRALLAEQ 261 (298)
T ss_pred HHHHHHHHHHHHhhCCCCCCCCcEEeCCCCcccC---------------CCCCCCHHHHHHHhhccEeHHHHHHHHHHcC
Confidence 6788899999999999999999999999999997 44444 89999999999999999999996 4
Q ss_pred CCCCccCcEEEeCCCHHHHHHHHHHhhhcC
Q psy13429 79 PQGNHFPRTFECGPGKSLVTILNQVNKKAG 108 (116)
Q Consensus 79 ~~g~~f~~~iEiGPg~~L~~l~k~~~~~~~ 108 (116)
|+ +.|||+|||++|+++++++.++.+
T Consensus 262 --g~--~~~ie~Gp~~~l~~~~~~~~~~~~ 287 (298)
T smart00827 262 --GV--TVFLEVGPHPVLTGPIKQTLPAAG 287 (298)
T ss_pred --CC--cEEEEeCCcHHHHHHHHHHHhccC
Confidence 77 556999999999999999987654
No 8
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA. Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.
Probab=99.67 E-value=1.5e-16 Score=151.83 Aligned_cols=90 Identities=28% Similarity=0.475 Sum_probs=82.4
Q ss_pred CccchHHHHHHHhcCCCCCCCccEEeCCCCccccccccchhhhcccccCCHHHHHhHHHHhhcCCcCHHHHHHHHHhCCC
Q psy13429 1 MVPAVEPFALALKKATINDMIIPVHSNVDGKIYRGENKEVSLSVSSLFRDANHIRRQLPKQIYKPVCWEQTLHILYERPQ 80 (116)
Q Consensus 1 M~pa~~~~~~~l~~~~~~~p~ipviSnv~g~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ql~~PV~w~~~i~~l~~~~~ 80 (116)
|+++.++|+++|+.++|+.|.+|+|||++|+++.. +.+.+++||.+|+++||+|.++|++|++.
T Consensus 795 m~~a~~~f~~~L~~i~~~~P~ipv~SnvtG~~~~~--------------~~~~i~~~~~~ql~~PV~F~~aIe~l~~~-- 858 (2582)
T TIGR02813 795 VAHAQKPFSAAIDKAKFNTPLVPLYSNGTGKLHSN--------------DAAAIKKALKNHMLQSVHFSEQLEAMYAA-- 858 (2582)
T ss_pred HHHHHHHHHHHHhhCCCCCCCceEEECCCCeEecC--------------chhhHHHHHHHHhhCeecHHHHHHHHHHC--
Confidence 78999999999999999999999999999999863 56778999999999999999999999987
Q ss_pred CCccCcEEEeCCCHHHHHHHHHHhhhcC
Q psy13429 81 GNHFPRTFECGPGKSLVTILNQVNKKAG 108 (116)
Q Consensus 81 g~~f~~~iEiGPg~~L~~l~k~~~~~~~ 108 (116)
|. +.|||+|||++|++++++++++..
T Consensus 859 G~--~~FVEiGPg~vLt~lv~~il~~~~ 884 (2582)
T TIGR02813 859 GA--RVFVEFGPKNILQKLVENTLKDKE 884 (2582)
T ss_pred CC--CEEEEcCCcHHHHHHHHHHhhccC
Confidence 88 455999999999999999987643
No 9
>TIGR02816 pfaB_fam PfaB family protein. The protein PfaB is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. The fairly permissive trusted cutoff set for this model allows detection of homologs encoded near homologs to other proteins of the locus: PfaA, PfaC, and/or PfaD. The likely role in every case is either polyunsaturated fatty acid or polyketide biosynthesis.
Probab=99.57 E-value=7.6e-15 Score=124.50 Aligned_cols=75 Identities=20% Similarity=0.272 Sum_probs=60.9
Q ss_pred CCCccEEeCCC--CccccccccchhhhcccccCCHHHHHhHHHHhhcCCcCHHHHHHHHHhCCCCCccCcEEEeCCCHHH
Q psy13429 19 DMIIPVHSNVD--GKIYRGENKEVSLSVSSLFRDANHIRRQLPKQIYKPVCWEQTLHILYERPQGNHFPRTFECGPGKSL 96 (116)
Q Consensus 19 ~p~ipviSnv~--g~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ql~~PV~w~~~i~~l~~~~~g~~f~~~iEiGPg~~L 96 (116)
+|++|++||++ |..... ....+++.+++||.+|+++||+|.++++.|++. |+ +.|||+|||++|
T Consensus 414 ~p~ip~iSnvt~tG~~~~~----------~~~~d~~~ia~yw~~ql~~PVrF~~~I~~L~~~--Gv--~~FVEIGPg~vL 479 (538)
T TIGR02816 414 PMDIKFISAADLLAKNQNS----------EQAIDSQSIANSIADTFCQTLDFTALIHHAQEQ--GA--KLFVEIGADRQN 479 (538)
T ss_pred ccCCeeeecccccCcccCC----------CcCCCHHHHHHHHHHcCCCccCHHHHHHHHHHC--CC--CEEEEeCCChHH
Confidence 68999999994 653210 000166788999999999999999999999998 88 555999999999
Q ss_pred HHHHHHHhhhc
Q psy13429 97 VTILNQVNKKA 107 (116)
Q Consensus 97 ~~l~k~~~~~~ 107 (116)
+++++++.++.
T Consensus 480 s~lv~~~l~~~ 490 (538)
T TIGR02816 480 CTLIDKINKQD 490 (538)
T ss_pred HHHHHHHhhcc
Confidence 99999998754
No 10
>COG3321 Polyketide synthase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.10 E-value=1.6e-10 Score=104.53 Aligned_cols=88 Identities=25% Similarity=0.372 Sum_probs=77.5
Q ss_pred CccchHHHHHHHhcCCCCCCCccEEeCCCCccccccccchhhhcccccCCHHHHHhHHHHhhcCCcCHHHHHHHHHhCCC
Q psy13429 1 MVPAVEPFALALKKATINDMIIPVHSNVDGKIYRGENKEVSLSVSSLFRDANHIRRQLPKQIYKPVCWEQTLHILYERPQ 80 (116)
Q Consensus 1 M~pa~~~~~~~l~~~~~~~p~ipviSnv~g~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ql~~PV~w~~~i~~l~~~~~ 80 (116)
|+|+.++|...+..+..+.|.+|++||++|.+.. ..-...+||.+|++.||+|.++++.+...
T Consensus 726 m~~~~~~~~~~la~i~~~~p~~p~~S~~~~~~~~---------------~~~~d~~yw~~~~r~~v~f~~~i~~~~~~-- 788 (1061)
T COG3321 726 MDPILDEFAAALADLAPRPPQIPLISNVTGDLAG---------------EPGGDAQYWVQHLRQPVRFADAIAAALAD-- 788 (1061)
T ss_pred HHHHHHHHHHHHhhcccCCCCcceeeeeeccccC---------------CcccCHHHHHHHHHhhccHHHHHHHHHhc--
Confidence 7899999999999999999999999999999843 33333799999999999999999999987
Q ss_pred CCccCcEEEeCCCHHHHHHHHHHhhhc
Q psy13429 81 GNHFPRTFECGPGKSLVTILNQVNKKA 107 (116)
Q Consensus 81 g~~f~~~iEiGPg~~L~~l~k~~~~~~ 107 (116)
|. ..|+|+|||.+|+..+++...+.
T Consensus 789 ~~--~~f~E~~p~p~l~~~~~~~~~~~ 813 (1061)
T COG3321 789 GA--RTFIEVGPGPVLTESIKQTLRDA 813 (1061)
T ss_pred cc--ceEEEecCCHhHHHHHHHHhhhh
Confidence 65 34499999999999999988764
No 11
>KOG1202|consensus
Probab=94.02 E-value=0.084 Score=50.02 Aligned_cols=86 Identities=19% Similarity=0.150 Sum_probs=58.1
Q ss_pred CccchHHHHHHHhcCCCCC-C-CccEEeCCCCccccccccchhhhcccccCCHHHH--HhHHHHhhcCCcCHHHHHHHHH
Q psy13429 1 MVPAVEPFALALKKATIND-M-IIPVHSNVDGKIYRGENKEVSLSVSSLFRDANHI--RRQLPKQIYKPVCWEQTLHILY 76 (116)
Q Consensus 1 M~pa~~~~~~~l~~~~~~~-p-~ipviSnv~g~~~~~~~~~~~~~~~~~~~~~~~i--~~~l~~ql~~PV~w~~~i~~l~ 76 (116)
|+.++.++++.|+++-.++ | ....+|+.-- -++|.-+.+.. .+|-+.++++||.|.++++.+=
T Consensus 696 m~a~~p~l~~~l~k~i~epK~rsarWlSTSip-------------Ea~W~s~la~tsSA~Y~vnNl~SPVLF~eAlq~vP 762 (2376)
T KOG1202|consen 696 MEAAAPPLRQSLEKVIPEPKPRSARWLSTSIP-------------EAQWHSSLARTSSAEYHVNNLVSPVLFHEALQHVP 762 (2376)
T ss_pred HHhhChHHHHHHHHhcCCCCCcccchhhccCC-------------hhhhcChhhhhcchhhhhhccccHHHHHHHHHhCc
Confidence 5677888888888764332 2 2234443211 12232233332 6899999999999999998875
Q ss_pred hCCCCCccCcEEEeCCCHHHHHHHHHHhh
Q psy13429 77 ERPQGNHFPRTFECGPGKSLVTILNQVNK 105 (116)
Q Consensus 77 ~~~~g~~f~~~iEiGPg~~L~~l~k~~~~ 105 (116)
++ ..++||.|+.-|..++|+.++
T Consensus 763 ~n------Av~vEiAPH~LlqAiLkRsL~ 785 (2376)
T KOG1202|consen 763 EN------AVVVEIAPHGLLQAILKRSLK 785 (2376)
T ss_pred cc------ceEEEecchHHHHHHHHhhcC
Confidence 53 334999999999999998764
No 12
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=64.51 E-value=5.9 Score=31.30 Aligned_cols=16 Identities=38% Similarity=0.609 Sum_probs=11.8
Q ss_pred CcEEEeCCCH-HHHHHH
Q psy13429 85 PRTFECGPGK-SLVTIL 100 (116)
Q Consensus 85 ~~~iEiGPg~-~L~~l~ 100 (116)
+.+||||||. +||..+
T Consensus 32 d~VlEIGpG~GaLT~~L 48 (259)
T COG0030 32 DNVLEIGPGLGALTEPL 48 (259)
T ss_pred CeEEEECCCCCHHHHHH
Confidence 6679999997 555544
No 13
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=50.11 E-value=47 Score=22.29 Aligned_cols=32 Identities=25% Similarity=0.410 Sum_probs=19.2
Q ss_pred CHHHHHHHHHhCCCCCccCcEEEeCCCH-HHHHHH
Q psy13429 67 CWEQTLHILYERPQGNHFPRTFECGPGK-SLVTIL 100 (116)
Q Consensus 67 ~w~~~i~~l~~~~~g~~f~~~iEiGPg~-~L~~l~ 100 (116)
.|.+.+..+....... .+++|+|+|. .+...+
T Consensus 8 ~~~~~~~~~~~~~~~~--~~vLDiGcG~G~~~~~l 40 (161)
T PF13489_consen 8 AYADLLERLLPRLKPG--KRVLDIGCGTGSFLRAL 40 (161)
T ss_dssp CHHHHHHHHHTCTTTT--SEEEEESSTTSHHHHHH
T ss_pred HHHHHHHHHhcccCCC--CEEEEEcCCCCHHHHHH
Confidence 4667777777421122 5669999996 333333
No 14
>cd04436 DEP_fRgd2 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in fungal RhoGAP (GTPase-activator protein) Rgd2-like proteins. Rgd2-like proteins share a common domain architecture, containing, beside the RhoGAP domain, a DEP and a FCH (Fes/CIP4 homology) domain. Yeast Rgd2 is a GAP protein for Cdc42 and Rho5.
Probab=39.82 E-value=60 Score=21.52 Aligned_cols=43 Identities=19% Similarity=0.263 Sum_probs=33.7
Q ss_pred hHHHHHHHhcCCCCCCCccEEeCCCCccccccccchhhhcccccCCHHHHHhHHHHhhcC
Q psy13429 5 VEPFALALKKATINDMIIPVHSNVDGKIYRGENKEVSLSVSSLFRDANHIRRQLPKQIYK 64 (116)
Q Consensus 5 ~~~~~~~l~~~~~~~p~ipviSnv~g~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ql~~ 64 (116)
.+-+...|++++..+-++|++.+.. . .. +.++|.++|.+++-.
T Consensus 3 k~lL~~ml~~ip~~~~kvPilGty~-n-t~---------------sG~~Iv~~L~~n~~~ 45 (84)
T cd04436 3 KELLAAMLKEIPLADYKVPILGTYQ-N-TS---------------SGSEIVSWLQENMPE 45 (84)
T ss_pred HHHHHHHHHhCCCccceeccccccc-C-cc---------------cHHHHHHHHHHcCCC
Confidence 3456788999999999999998654 2 22 568899999999875
No 15
>KOG0820|consensus
Probab=38.26 E-value=17 Score=29.56 Aligned_cols=25 Identities=20% Similarity=0.336 Sum_probs=16.1
Q ss_pred HHHHHHHHhCCCCC-ccCcEEEeCCCH
Q psy13429 69 EQTLHILYERPQGN-HFPRTFECGPGK 94 (116)
Q Consensus 69 ~~~i~~l~~~~~g~-~f~~~iEiGPg~ 94 (116)
...++.+++.. +. .-+.++|||||.
T Consensus 44 p~v~~~I~~ka-~~k~tD~VLEvGPGT 69 (315)
T KOG0820|consen 44 PLVIDQIVEKA-DLKPTDVVLEVGPGT 69 (315)
T ss_pred HHHHHHHHhcc-CCCCCCEEEEeCCCC
Confidence 45666666642 22 126789999997
No 16
>KOG4479|consensus
Probab=38.12 E-value=12 Score=25.05 Aligned_cols=26 Identities=15% Similarity=0.287 Sum_probs=16.3
Q ss_pred EEeCCCHHHHHHHHHHhhhcCCCccc
Q psy13429 88 FECGPGKSLVTILNQVNKKAGDSAAK 113 (116)
Q Consensus 88 iEiGPg~~L~~l~k~~~~~~~~~~~~ 113 (116)
+|+|.+.-+..++|.+....+...++
T Consensus 29 vECGW~d~ik~mcrniimEkG~~n~t 54 (92)
T KOG4479|consen 29 VECGWHDDIKEMCRNIIMEKGVDNIT 54 (92)
T ss_pred HHcccHHHHHHHHHHHHHHhcccccc
Confidence 67777777777777766655544443
No 17
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=37.22 E-value=43 Score=20.21 Aligned_cols=27 Identities=26% Similarity=0.347 Sum_probs=22.0
Q ss_pred CCccEEeCCCCccccccccchhhhcccccCCHHHHHhHHHHh
Q psy13429 20 MIIPVHSNVDGKIYRGENKEVSLSVSSLFRDANHIRRQLPKQ 61 (116)
Q Consensus 20 p~ipviSnv~g~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~q 61 (116)
.++|++-..+|+.+. +...|-+||.+|
T Consensus 44 ~~VP~L~~~~g~vi~---------------eS~~I~~yL~~~ 70 (70)
T PF13409_consen 44 GKVPVLVDPDGTVIN---------------ESLAILEYLEEQ 70 (70)
T ss_dssp -SSSEEEETTTEEEE---------------SHHHHHHHHHHT
T ss_pred eEEEEEEECCCCEee---------------CHHHHHHHHhcC
Confidence 578999888899887 788899999876
No 18
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=36.11 E-value=15 Score=27.97 Aligned_cols=26 Identities=27% Similarity=0.401 Sum_probs=17.2
Q ss_pred hHHHHhhcCCcCHHHHHHHHHhCCCCCccCcEEEeCCCH
Q psy13429 56 RQLPKQIYKPVCWEQTLHILYERPQGNHFPRTFECGPGK 94 (116)
Q Consensus 56 ~~l~~ql~~PV~w~~~i~~l~~~~~g~~f~~~iEiGPg~ 94 (116)
+++++-+.+-|+|++ |.- ++|+|||.
T Consensus 34 s~lA~~M~s~I~pes----------glp---VlElGPGT 59 (194)
T COG3963 34 SILARKMASVIDPES----------GLP---VLELGPGT 59 (194)
T ss_pred HHHHHHHHhccCccc----------CCe---eEEEcCCc
Confidence 466666777777743 322 28999997
No 19
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=35.16 E-value=1.3e+02 Score=23.56 Aligned_cols=50 Identities=20% Similarity=0.132 Sum_probs=36.9
Q ss_pred CHHHHHhHHHHhhcCCcCHHHHHHHHHhCCCCCccCcEEEeCCCHHHHHHHHHHhh
Q psy13429 50 DANHIRRQLPKQIYKPVCWEQTLHILYERPQGNHFPRTFECGPGKSLVTILNQVNK 105 (116)
Q Consensus 50 ~~~~i~~~l~~ql~~PV~w~~~i~~l~~~~~g~~f~~~iEiGPg~~L~~l~k~~~~ 105 (116)
+.+++.+.+...+...+.+...+....+. |..+ . .+|.+.|...+.+++.
T Consensus 271 ~~~~i~~~lg~~v~~~Ip~d~~v~~a~~~--G~~~---~-~~~~~~~~~~~~~~l~ 320 (322)
T TIGR03815 271 DPEEIAESLGLPLLGEVRDQRGLARALER--GGLP---A-ASRRRPLGRAAAEVLD 320 (322)
T ss_pred CHHHHHHHhCCCceeeCCCChhHHHHHhC--CCCc---C-CCCCCHHHHHHHHHHh
Confidence 45677777776777778888888777776 6422 3 8898899999888764
No 20
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=29.90 E-value=53 Score=24.19 Aligned_cols=35 Identities=23% Similarity=0.381 Sum_probs=21.7
Q ss_pred HhHHHHhhcCCcCH----HHHHHHHHhCCCCCccCcEEEeCCC
Q psy13429 55 RRQLPKQIYKPVCW----EQTLHILYERPQGNHFPRTFECGPG 93 (116)
Q Consensus 55 ~~~l~~ql~~PV~w----~~~i~~l~~~~~g~~f~~~iEiGPg 93 (116)
.-||.+|...||.| .++++...+. +- ..||.||-.
T Consensus 9 Spyl~~ha~~~V~W~~w~~ea~~~Ak~e--~K--pIfl~ig~~ 47 (163)
T PF03190_consen 9 SPYLRQHAHNPVNWQPWGEEALEKAKKE--NK--PIFLSIGYS 47 (163)
T ss_dssp -HHHHTTTTSSS--B-SSHHHHHHHHHH--T----EEEEEE-T
T ss_pred CHHHHHhccCCCCcccCCHHHHHHHHhc--CC--cEEEEEEec
Confidence 46999999999998 4677766654 44 334888844
No 21
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=29.12 E-value=33 Score=26.35 Aligned_cols=17 Identities=35% Similarity=0.530 Sum_probs=11.8
Q ss_pred CcEEEeCCCH-HHHHHHH
Q psy13429 85 PRTFECGPGK-SLVTILN 101 (116)
Q Consensus 85 ~~~iEiGPg~-~L~~l~k 101 (116)
+.++|+|||. +|+..+.
T Consensus 32 ~~VlEiGpG~G~lT~~L~ 49 (262)
T PF00398_consen 32 DTVLEIGPGPGALTRELL 49 (262)
T ss_dssp SEEEEESSTTSCCHHHHH
T ss_pred CEEEEeCCCCccchhhHh
Confidence 4569999997 4555443
No 22
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=28.87 E-value=66 Score=19.42 Aligned_cols=29 Identities=24% Similarity=0.282 Sum_probs=23.1
Q ss_pred CCccEEeCCCCccccccccchhhhcccccCCHHHHHhHHHHhhcC
Q psy13429 20 MIIPVHSNVDGKIYRGENKEVSLSVSSLFRDANHIRRQLPKQIYK 64 (116)
Q Consensus 20 p~ipviSnv~g~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ql~~ 64 (116)
-++|++. .+|..+. +...|.+||.++--.
T Consensus 45 ~~vPvL~-~~g~~l~---------------dS~~I~~yL~~~~~~ 73 (75)
T PF13417_consen 45 GKVPVLV-DDGEVLT---------------DSAAIIEYLEERYPG 73 (75)
T ss_dssp SBSSEEE-ETTEEEE---------------SHHHHHHHHHHHSTS
T ss_pred ccceEEE-ECCEEEe---------------CHHHHHHHHHHHcCC
Confidence 4789998 7788888 788898998876543
No 23
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=27.32 E-value=2e+02 Score=20.12 Aligned_cols=76 Identities=17% Similarity=0.137 Sum_probs=47.7
Q ss_pred HHhcCCCCCCCccEEeCCCCccccccccchhhhcccccCCHHHHHhHHHHh-hcC------------CcCHHHHHHHHHh
Q psy13429 11 ALKKATINDMIIPVHSNVDGKIYRGENKEVSLSVSSLFRDANHIRRQLPKQ-IYK------------PVCWEQTLHILYE 77 (116)
Q Consensus 11 ~l~~~~~~~p~ipviSnv~g~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~q-l~~------------PV~w~~~i~~l~~ 77 (116)
+++.+.-..|++=.+|...+.... ....+.+.|.++ +.. +=+|.+..+.+.+
T Consensus 46 i~~~a~~~~~d~V~lS~~~~~~~~---------------~~~~~~~~L~~~~~~~~~i~vGG~~~~~~~~~~~~~~~l~~ 110 (137)
T PRK02261 46 FIDAAIETDADAILVSSLYGHGEI---------------DCRGLREKCIEAGLGDILLYVGGNLVVGKHDFEEVEKKFKE 110 (137)
T ss_pred HHHHHHHcCCCEEEEcCccccCHH---------------HHHHHHHHHHhcCCCCCeEEEECCCCCCccChHHHHHHHHH
Confidence 333444557888889988886554 344455556555 211 1138887788887
Q ss_pred CCCCCccCcEEEeCCCHHHHHHHHHHhhhc
Q psy13429 78 RPQGNHFPRTFECGPGKSLVTILNQVNKKA 107 (116)
Q Consensus 78 ~~~g~~f~~~iEiGPg~~L~~l~k~~~~~~ 107 (116)
. |+ +. =.|||..+...+..+.+..
T Consensus 111 ~--G~--~~--vf~~~~~~~~i~~~l~~~~ 134 (137)
T PRK02261 111 M--GF--DR--VFPPGTDPEEAIDDLKKDL 134 (137)
T ss_pred c--CC--CE--EECcCCCHHHHHHHHHHHh
Confidence 7 76 22 2588888888877666544
No 24
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=25.00 E-value=2e+02 Score=20.27 Aligned_cols=67 Identities=16% Similarity=0.115 Sum_probs=43.8
Q ss_pred CCCCCCccEEeCCCCccccccccchhhhcccccCCHHHHHhHHHHhhc-------------CCcCHHHHHHHHHhCCCCC
Q psy13429 16 TINDMIIPVHSNVDGKIYRGENKEVSLSVSSLFRDANHIRRQLPKQIY-------------KPVCWEQTLHILYERPQGN 82 (116)
Q Consensus 16 ~~~~p~ipviSnv~g~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ql~-------------~PV~w~~~i~~l~~~~~g~ 82 (116)
.-+.|++=.+|+..+.-.. ....+.+.|.++=. .+-+|.+....|.+. |+
T Consensus 47 ~~~~adiVglS~L~t~~~~---------------~~~~~~~~l~~~gl~~v~vivGG~~~i~~~d~~~~~~~L~~~--Gv 109 (128)
T cd02072 47 IETDADAILVSSLYGHGEI---------------DCKGLREKCDEAGLKDILLYVGGNLVVGKQDFEDVEKRFKEM--GF 109 (128)
T ss_pred HHcCCCEEEEeccccCCHH---------------HHHHHHHHHHHCCCCCCeEEEECCCCCChhhhHHHHHHHHHc--CC
Confidence 3457888888998887654 33444445544421 333788888888887 87
Q ss_pred ccCcEEEeCCCHHHHHHHHHH
Q psy13429 83 HFPRTFECGPGKSLVTILNQV 103 (116)
Q Consensus 83 ~f~~~iEiGPg~~L~~l~k~~ 103 (116)
+++ +|||..+..++..+
T Consensus 110 --~~v--f~pgt~~~~i~~~l 126 (128)
T cd02072 110 --DRV--FAPGTPPEEAIADL 126 (128)
T ss_pred --CEE--ECcCCCHHHHHHHH
Confidence 322 48999888887655
No 25
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=22.87 E-value=78 Score=23.98 Aligned_cols=17 Identities=35% Similarity=0.470 Sum_probs=11.4
Q ss_pred CcEEEeCCCH-HHHHHHH
Q psy13429 85 PRTFECGPGK-SLVTILN 101 (116)
Q Consensus 85 ~~~iEiGPg~-~L~~l~k 101 (116)
+.++|+|||. .|+..+.
T Consensus 31 ~~VLEiG~G~G~lt~~L~ 48 (253)
T TIGR00755 31 DVVLEIGPGLGALTEPLL 48 (253)
T ss_pred CEEEEeCCCCCHHHHHHH
Confidence 5679999987 4444443
No 26
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=22.20 E-value=47 Score=23.90 Aligned_cols=20 Identities=30% Similarity=0.350 Sum_probs=15.3
Q ss_pred CcEEEeCCCHHHHHHHHHHh
Q psy13429 85 PRTFECGPGKSLVTILNQVN 104 (116)
Q Consensus 85 ~~~iEiGPg~~L~~l~k~~~ 104 (116)
.+++|+|-|..|.+++-...
T Consensus 47 ~~VLELGaG~Gl~gi~~a~~ 66 (173)
T PF10294_consen 47 KRVLELGAGTGLPGIAAAKL 66 (173)
T ss_dssp SEEEETT-TTSHHHHHHHHT
T ss_pred ceEEEECCccchhHHHHHhc
Confidence 45699999999999886555
No 27
>KOG2368|consensus
Probab=22.14 E-value=1.4e+02 Score=23.90 Aligned_cols=85 Identities=27% Similarity=0.317 Sum_probs=49.7
Q ss_pred chHHHHHHHhcC-CCCCCCccEEeCCCCccccccccchhhhcccccCCHHHHHhHHHHhhcCCcCHHHHHHHHHhCCCCC
Q psy13429 4 AVEPFALALKKA-TINDMIIPVHSNVDGKIYRGENKEVSLSVSSLFRDANHIRRQLPKQIYKPVCWEQTLHILYERPQGN 82 (116)
Q Consensus 4 a~~~~~~~l~~~-~~~~p~ipviSnv~g~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ql~~PV~w~~~i~~l~~~~~g~ 82 (116)
....|...++.. ..+-|-.-++|++-|-||.. + ..|-.-......|++. |.
T Consensus 132 s~~rf~~v~kaA~~~ni~vRGYVScvvGCPyeG---------------~-----------v~P~kVa~V~k~ly~m--GC 183 (316)
T KOG2368|consen 132 SLKRFMEVLKAAQEHNIRVRGYVSCVVGCPYEG---------------A-----------VQPSKVAEVVKKLYEM--GC 183 (316)
T ss_pred HHHHHHHHHHHHHHcCCccceEEEEEecCCccC---------------C-----------cCHHHHHHHHHHHHhC--Cc
Confidence 344566555543 33446667899999999972 1 1222233446777776 54
Q ss_pred -c--cCcEEEeCCCHHHHHHHHHHhhhcCCCcccCCC
Q psy13429 83 -H--FPRTFECGPGKSLVTILNQVNKKAGDSAAKVPC 116 (116)
Q Consensus 83 -~--f~~~iEiGPg~~L~~l~k~~~~~~~~~~~~~~~ 116 (116)
. +--.|-+|.-.+...|+..+.+........|-|
T Consensus 184 yEiSLGDTIGvGTpgtm~~ML~~Vmk~vPa~~LAVH~ 220 (316)
T KOG2368|consen 184 YEISLGDTIGVGTPGTMKRMLDAVMKVVPAEKLAVHC 220 (316)
T ss_pred EEEecccccccCCchhHHHHHHHHHHhCCHHHhhhhh
Confidence 1 111244555567778888877776665555554
No 28
>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]
Probab=21.47 E-value=3.8e+02 Score=22.37 Aligned_cols=85 Identities=18% Similarity=0.135 Sum_probs=58.4
Q ss_pred hHHHHHHHhcCCCCCCCccEEeCCCCccccccccchhhhcccccCCHHHHHhHHHHhhcCCcCHHHHHHHHHhCCCCCcc
Q psy13429 5 VEPFALALKKATINDMIIPVHSNVDGKIYRGENKEVSLSVSSLFRDANHIRRQLPKQIYKPVCWEQTLHILYERPQGNHF 84 (116)
Q Consensus 5 ~~~~~~~l~~~~~~~p~ipviSnv~g~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ql~~PV~w~~~i~~l~~~~~g~~f 84 (116)
+.+|-+.+++...+.++.-++-|.-+.+... ++.++-+.+--|...-+-|.-.+-..... .|...
T Consensus 257 ak~lld~l~~~r~~~~~p~lv~n~~~~~~~~--------------~~~dl~~~~~i~~~~~~p~d~~~~~~A~n-~g~~l 321 (366)
T COG4963 257 AKELLDELKRLRPNDPKPILVLNRVGVPKRP--------------EPSDLEEILGIESLLVLPFDPALFGDAAN-NGRML 321 (366)
T ss_pred HHHHHHHHHHhCCCCCCceEEeeecCCCCCC--------------CHHHHHHHhCCchhccccCCchhhhhhhc-cCccc
Confidence 4578889999999999988888877777663 55666555555555555555555444432 26544
Q ss_pred CcEEEeCCCHHHHHHHHHHhhhc
Q psy13429 85 PRTFECGPGKSLVTILNQVNKKA 107 (116)
Q Consensus 85 ~~~iEiGPg~~L~~l~k~~~~~~ 107 (116)
.|+-|+.....-++++....
T Consensus 322 ---~E~~~~~~~~k~l~~la~~l 341 (366)
T COG4963 322 ---SEVDPGSPAAKALAQLAQSL 341 (366)
T ss_pred ---cccCCCChHHHHHHHHHHHh
Confidence 89999998877777765544
Done!