RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy13429
         (116 letters)



>gnl|CDD|215401 PLN02752, PLN02752, [acyl-carrier protein] S-malonyltransferase.
          Length = 343

 Score = 64.8 bits (158), Expect = 2e-13
 Identities = 33/107 (30%), Positives = 47/107 (43%), Gaps = 19/107 (17%)

Query: 1   MVPAVEPFALALKKATINDMIIPVHSNVDGKIYRGENKEVSLSVSSLFRDANHIRRQLPK 60
           M PAV+    AL    I    IPV SNVD +                  D   I++ L +
Sbjct: 249 MEPAVDALEAALAAVEIRTPRIPVISNVDAQP---------------HSDPATIKKILAR 293

Query: 61  QIYKPVCWEQTLHILYERPQGNHFPRTFECGPGKSLVTILNQVNKKA 107
           Q+  PV WE T+  L          +++E GPGK +  I+ +V+K A
Sbjct: 294 QVTSPVQWETTVKTL----LEKGLEKSYELGPGKVIAGIVKRVDKGA 336


>gnl|CDD|223408 COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid
           metabolism].
          Length = 310

 Score = 63.8 bits (156), Expect = 2e-13
 Identities = 36/115 (31%), Positives = 47/115 (40%), Gaps = 19/115 (16%)

Query: 1   MVPAVEPFALALKKATINDMIIPVHSNVDGKIYRGENKEVSLSVSSLFRDANHIRRQLPK 60
           M PA +  A AL+K   +D ++PV SNVD K                  D   IR  L K
Sbjct: 206 MKPAADELAEALEKVRFSDPLVPVISNVDAKPV---------------LDGEEIRELLAK 250

Query: 61  QIYKPVCWEQTLHILYERPQGNHFPRTFECGPGKSLVTILNQVNKKAGDSAAKVP 115
           Q+  PV W +T+  L        F    E GPGK L  +  ++ K  G  A    
Sbjct: 251 QLTSPVRWTETVETLKAD-GVTRF---VEIGPGKVLTGLAKRILKGLGVRAVGSL 301


>gnl|CDD|232839 TIGR00128, fabD, malonyl CoA-acyl carrier protein transacylase.
           This enzyme of fatty acid biosynthesis transfers the
           malonyl moeity from coenzyme A to acyl-carrier protein.
           The seed alignment for this family of proteins contains
           a single member each from a number of bacterial species
           but also an additional pair of closely related,
           uncharacterized proteins from B. subtilis, one of which
           has a long C-terminal extension [Fatty acid and
           phospholipid metabolism, Biosynthesis].
          Length = 290

 Score = 50.2 bits (120), Expect = 2e-08
 Identities = 33/107 (30%), Positives = 46/107 (42%), Gaps = 19/107 (17%)

Query: 1   MVPAVEPFALALKKATINDMIIPVHSNVDGKIYRGENKEVSLSVSSLFRDANHIRRQLPK 60
           M PA E FA  L+    ND  +PV SNVD K Y   N +              I+ +L +
Sbjct: 203 MKPAAEKFAETLEACQFNDPTVPVISNVDAKPY--TNGD-------------RIKEKLSE 247

Query: 61  QIYKPVCWEQTLHILYERPQGNHFPRTFECGPGKSLVTILNQVNKKA 107
           Q+  PV W  ++  L  R     F    E GPGK L  ++ ++    
Sbjct: 248 QLTSPVRWTDSVEKLMARGV-TEF---AEVGPGKVLTGLIKRIKNDL 290


>gnl|CDD|132175 TIGR03131, malonate_mdcH, malonate decarboxylase, epsilon subunit. 
           Members of this protein family are the epsilon subunit
           of malonate decarboxylase. This subunit has
           malonyl-CoA/dephospho-CoA acyltransferase activity.
           Malonate decarboxylase may be a soluble enzyme, or
           linked to membrane subunits and active as a sodium pump.
           The epsilon subunit is closely related to the malonyl
           CoA-acyl carrier protein (ACP) transacylase family
           described by TIGR00128, but acts on an ACP subunit of
           malonate decarboxylase that has an unusual coenzyme A
           derivative as its prothetic group.
          Length = 295

 Score = 46.9 bits (112), Expect = 3e-07
 Identities = 31/103 (30%), Positives = 40/103 (38%), Gaps = 21/103 (20%)

Query: 4   AVEPFALALKKATINDMIIPVHSNVDGKIYRGENKEVSLSVSSLFRDANHIRRQLPKQIY 63
           A E FA AL +  +    +P  S +D +               L RDA  IR  L +QI 
Sbjct: 195 AAEQFAEALAEIPLAAPRLPYLSGIDAR---------------LVRDAAQIRDDLARQIA 239

Query: 64  KPVCWEQTLHILYERPQGNHFPRTF-ECGPGKSLVTILNQVNK 105
            PV W   +   YER       R   E GPG  L  + N+   
Sbjct: 240 TPVDWHDCMQAAYERG-----ARLVIELGPGDVLTKLANEAFP 277


>gnl|CDD|214838 smart00827, PKS_AT, Acyl transferase domain in polyketide synthase
           (PKS) enzymes. 
          Length = 298

 Score = 35.1 bits (82), Expect = 0.003
 Identities = 28/113 (24%), Positives = 39/113 (34%), Gaps = 19/113 (16%)

Query: 1   MVPAVEPFALALKKATINDMIIPVHSNVDGKIYRGENKEVSLSVSSLFRDANHIRRQLPK 60
           M P ++ F  AL   T     IP  S V G +  G              DA++  R L  
Sbjct: 197 MEPILDEFRAALAGLTPRPPRIPFVSTVTGTLIDGAE----------LDDADYWVRNL-- 244

Query: 61  QIYKPVCWEQTLHILYERPQGNHFPRTF-ECGPGKSLVTILNQVNKKAGDSAA 112
              +PV +   +  L    +G      F E GP   L   + Q    AG +  
Sbjct: 245 --REPVRFADAVRALLA--EGGV--TVFLEVGPHPVLTGPIKQTLAAAGSAVV 291


>gnl|CDD|234022 TIGR02813, omega_3_PfaA, polyketide-type polyunsaturated fatty acid
           synthase PfaA.  Members of the seed for this alignment
           are involved in omega-3 polyunsaturated fatty acid
           biosynthesis, such as the protein PfaA from the
           eicosapentaenoic acid biosynthesis operon in
           Photobacterium profundum strain SS9. PfaA is encoded
           together with PfaB, PfaC, and PfaD, and the functions of
           the individual polypeptides have not yet been described.
           More distant homologs of PfaA, also included with the
           reach of this model, appear to be involved in
           polyketide-like biosynthetic mechanisms of
           polyunsaturated fatty acid biosynthesis, an alternative
           to the more familiar iterated mechanism of chain
           extension and desaturation, and in most cases are
           encoded near genes for homologs of PfaB, PfaC, and/or
           PfaD.
          Length = 2582

 Score = 33.1 bits (75), Expect = 0.023
 Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 14/73 (19%)

Query: 4   AVEPFALALKKATINDMIIPVHSNVDGKIYRGENKEVSLSVSSLFRDANHIRRQLPKQIY 63
           A +PF+ A+ KA  N  ++P++SN  GK++                DA  I++ L   + 
Sbjct: 798 AQKPFSAAIDKAKFNTPLVPLYSNGTGKLHS--------------NDAAAIKKALKNHML 843

Query: 64  KPVCWEQTLHILY 76
           + V + + L  +Y
Sbjct: 844 QSVHFSEQLEAMY 856


>gnl|CDD|173599 PTZ00409, PTZ00409, Sir2 (Silent Information Regulator) protein;
           Provisional.
          Length = 271

 Score = 27.6 bits (61), Expect = 1.3
 Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 6/59 (10%)

Query: 12  LKKATINDMIIPVHSNVDGKIYRGENKEVSLSVSSLFRDANHIRRQLPKQ-----IYKP 65
           L + + N  +IP+H +V         K + L+   + +  +H   QLP +     I+KP
Sbjct: 119 LHEESGNTKVIPLHGSVFEARCCTCRKTIQLN-KIMLQKTSHFMHQLPPECPCGGIFKP 176


>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel;
           Provisional.
          Length = 823

 Score = 26.8 bits (59), Expect = 3.7
 Identities = 7/16 (43%), Positives = 9/16 (56%)

Query: 52  NHIRRQLPKQIYKPVC 67
             +  QLPK I K +C
Sbjct: 353 QQLIDQLPKSICKSIC 368


>gnl|CDD|177477 PHA02695, PHA02695, hypothetical protein; Provisional.
          Length = 725

 Score = 25.4 bits (55), Expect = 8.5
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 56 RQLPKQIYKPVCWEQTLHILYERPQ 80
          + LP+++Y PV  E   H+   RPQ
Sbjct: 41 KHLPRRLYAPVSAEHPTHLHLFRPQ 65


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.319    0.136    0.412 

Gapped
Lambda     K      H
   0.267   0.0893    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,685,805
Number of extensions: 466601
Number of successful extensions: 342
Number of sequences better than 10.0: 1
Number of HSP's gapped: 336
Number of HSP's successfully gapped: 14
Length of query: 116
Length of database: 10,937,602
Length adjustment: 79
Effective length of query: 37
Effective length of database: 7,433,636
Effective search space: 275044532
Effective search space used: 275044532
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (23.9 bits)