RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13429
(116 letters)
>2c2n_A Malonyl COA-acyl carrier protein transacylase; fatty acid synthase,
lipid synthesis, mitochondrion transfer transferase;
HET: AE4; 1.55A {Homo sapiens}
Length = 339
Score = 108 bits (272), Expect = 5e-30
Identities = 47/114 (41%), Positives = 60/114 (52%), Gaps = 15/114 (13%)
Query: 1 MVPAVEPFALALKKATINDMIIPVHSNVDGKIYRGENKEVSLSVSSLFRDANHIRRQLPK 60
M PAVEP ALK I ++ V+SNV G YR HI + L +
Sbjct: 238 MEPAVEPLTQALKAVDIKKPLVSVYSNVHGHRYR---------------HPGHIHKLLAQ 282
Query: 61 QIYKPVCWEQTLHILYERPQGNHFPRTFECGPGKSLVTILNQVNKKAGDSAAKV 114
Q+ PV WEQT+H +YER +G FP+TFE GPG+ L IL N +A S + V
Sbjct: 283 QLVSPVKWEQTMHAIYERKKGRGFPQTFEVGPGRQLGAILKSCNMQAWKSYSAV 336
>3sbm_A DISD protein, DSZD; transferase; HET: P6G; 1.35A {Sorangium
cellulosum} PDB: 3rgi_A
Length = 281
Score = 73.7 bits (182), Expect = 3e-17
Identities = 30/108 (27%), Positives = 42/108 (38%), Gaps = 22/108 (20%)
Query: 1 MVPAVEPFALALKKATINDMIIPVHSNVDGKIYRGENKEVSLSVSSLFRDANHIRRQLPK 60
M PA+ F L+ IPV SNV + A+ IR L +
Sbjct: 195 MRPAMVEFGRFLEGYDFAPPKIPVISNVTARPC----------------KADGIRAALSE 238
Query: 61 QIYKPVCWEQTLHILYERPQG-NHFPRTFECGPGKSLVTILNQVNKKA 107
QI PV W +++ L +G F ECG G L + Q+ + A
Sbjct: 239 QIASPVRWCESIRYLMG--RGVEEF---VECGHGIVLTGLYAQIRRDA 281
>3im8_A Malonyl acyl carrier protein transacylase; fatty acid synthesis,
malonyl-COA, acyl carrier protein TRAN (MCAT), FABD,
acyltransferase; 2.10A {Streptococcus pneumoniae}
Length = 307
Score = 74.1 bits (183), Expect = 3e-17
Identities = 21/97 (21%), Positives = 41/97 (42%), Gaps = 22/97 (22%)
Query: 1 MVPAVEPFALALKKATINDMIIPVHSNVDGKIYRGENKEVSLSVSSLFRDANHIRRQLPK 60
+ PA + A L + + +D P+ N + + I + L +
Sbjct: 203 LEPASQKLAETLAQVSFSDFTCPLVGNTEAAVM----------------QKEDIAQLLTR 246
Query: 61 QIYKPVCWEQTLHILYERPQG-NHFPRTFECGPGKSL 96
Q+ +PV + +++ ++ E G ++F E GPGK L
Sbjct: 247 QVKEPVRFYESIGVMQE--AGISNF---IEIGPGKVL 278
>3tqe_A Malonyl-COA-[acyl-carrier-protein] transacylase; fatty
acid/phospholipid metabolism, transferase; HET: MSE;
1.50A {Coxiella burnetii}
Length = 316
Score = 73.7 bits (182), Expect = 4e-17
Identities = 31/97 (31%), Positives = 43/97 (44%), Gaps = 21/97 (21%)
Query: 1 MVPAVEPFALALKKATINDMIIPVHSNVDGKIYRGENKEVSLSVSSLFRDANHIRRQLPK 60
M PA + A + K +I+ +PV NVD + +AN IR L K
Sbjct: 209 MQPAADRLAQDIAKISIDSPKVPVIHNVDVVDH---------------NEANIIRGALIK 253
Query: 61 QIYKPVCWEQTLHILYERPQG-NHFPRTFECGPGKSL 96
Q+ +PV W +T+ + E QG F ECGP L
Sbjct: 254 QLVRPVRWVETIKYIEE--QGIKVF---MECGPDNKL 285
>1mla_A Malonyl-coenzyme A acyl carrier protein transacylase;
acyltransferase; 1.50A {Escherichia coli} SCOP: c.19.1.1
d.58.23.1 PDB: 2g2o_A 2g1h_A 2g2y_A 2g2z_A* 3h0p_A
3hjv_A*
Length = 309
Score = 73.3 bits (181), Expect = 5e-17
Identities = 31/97 (31%), Positives = 44/97 (45%), Gaps = 21/97 (21%)
Query: 1 MVPAVEPFALALKKATINDMIIPVHSNVDGKIYRGENKEVSLSVSSLFRDANHIRRQLPK 60
M PA + A+ L K T N +PV +NVD K + + IR L +
Sbjct: 205 MKPAADKLAVELAKITFNAPTVPVVNNVDVKCE---------------TNGDAIRDALVR 249
Query: 61 QIYKPVCWEQTLHILYERPQG-NHFPRTFECGPGKSL 96
Q+Y PV W +++ + QG H +E GPGK L
Sbjct: 250 QLYNPVQWTKSVEYMAA--QGVEHL---YEVGPGKVL 281
>3k89_A Malonyl COA-ACP transacylase; bacterial blight, XOO0880, FABD,
xanthomonas oryzae PV. ORYZ KACC10331, transferase;
1.60A {Xanthomonas oryzae PV} PDB: 3een_A 3r97_A*
Length = 314
Score = 73.3 bits (181), Expect = 5e-17
Identities = 27/97 (27%), Positives = 38/97 (39%), Gaps = 21/97 (21%)
Query: 1 MVPAVEPFALALKKATINDMIIPVHSNVDGKIYRGENKEVSLSVSSLFRDANHIRRQLPK 60
M A A+ + + IPV NVD +++ + IR+ L +
Sbjct: 207 MRDAANQLGEAMAGLSWHAPQIPVVQNVDARVH---------------DGSAAIRQALVE 251
Query: 61 QIYKPVCWEQTLHILYERPQG-NHFPRTFECGPGKSL 96
Q+Y PV W + L QG ECGPGK L
Sbjct: 252 QLYLPVQWTGCVQALAS--QGITRI---AECGPGKVL 283
>3ptw_A Malonyl COA-acyl carrier protein transacylase; structural genomics,
protein structure initiative; 2.10A {Clostridium
perfringens}
Length = 336
Score = 73.0 bits (180), Expect = 8e-17
Identities = 28/97 (28%), Positives = 41/97 (42%), Gaps = 21/97 (21%)
Query: 1 MVPAVEPFALALKKATINDMIIPVHSNVDGKIYRGENKEVSLSVSSLFRDANHIRRQLPK 60
+ PA E L K +IN + V SNV G+ Y + ++I L
Sbjct: 203 LQPAAEKLEDELNKISINKLNGIVMSNVKGEAY---------------LEDDNIIELLTS 247
Query: 61 QIYKPVCWEQTLHILYERPQG-NHFPRTFECGPGKSL 96
Q+ KPV + + + E G + F E GPGK+L
Sbjct: 248 QVKKPVLFINDIEKMIE--SGVDTF---IEIGPGKAL 279
>3ezo_A Malonyl COA-acyl carrier protein transacylase; ssgcid,
acyl-carrier-protein S-malonyltransferase,
acyltransferase, transferase; 2.05A {Burkholderia
pseudomallei 1710B}
Length = 318
Score = 72.9 bits (180), Expect = 9e-17
Identities = 23/97 (23%), Positives = 35/97 (36%), Gaps = 21/97 (21%)
Query: 1 MVPAVEPFALALKKATINDMIIPVHSNVDGKIYRGENKEVSLSVSSLFRDANHIRRQLPK 60
+ PA + L + I V +N+D + D I+ L +
Sbjct: 211 LKPASDKLREYLAGVDVKAPKISVVNNIDVAVV---------------SDPAAIKDALVR 255
Query: 61 QIYKPVCWEQTLHILYERPQG-NHFPRTFECGPGKSL 96
Q PV W + + + +G H ECGPGK L
Sbjct: 256 QAAGPVRWVECVQHIAR--EGVTHV---IECGPGKVL 287
>2qc3_A MCT, malonyl COA-acyl carrier protein transacylase; malonyl-COA:ACP
transacylase, , nucleophili fatty acids biosynthesis;
2.30A {Mycobacterium tuberculosis} PDB: 2qj3_A
Length = 303
Score = 72.6 bits (179), Expect = 1e-16
Identities = 27/116 (23%), Positives = 36/116 (31%), Gaps = 21/116 (18%)
Query: 1 MVPAVEPFALALKKATINDMIIPVHSNVDGKIYRGENKEVSLSVSSLFRDANHIRRQLPK 60
M PA++ FA A D + SN DGK A L
Sbjct: 199 MAPALDGFAAAAANIATADPTATLLSNRDGKPV---------------TSAAAAMDTLVS 243
Query: 61 QIYKPVCWEQTLHILYERPQG-NHFPRTFECGPGKSLVTILNQVNKKAGDSAAKVP 115
Q+ +PV W+ L E E P +L I + + A K P
Sbjct: 244 QLTQPVRWDLCTATLRE--HTVTAI---VEFPPAGTLSGIAKRELRGVPARAVKSP 294
>2h1y_A Malonyl coenzyme A-acyl carrier protein transacyl; FABD, MCAT,
transferase; 2.50A {Helicobacter pylori}
Length = 321
Score = 72.6 bits (179), Expect = 1e-16
Identities = 17/97 (17%), Positives = 31/97 (31%), Gaps = 22/97 (22%)
Query: 1 MVPAVEPFALALKKATINDMIIPVHSNVDGKIYRGENKEVSLSVSSLFRDANHIRRQLPK 60
+ P + F L+K+ + + SN + Y + L
Sbjct: 214 LEPMIFKFQELLEKSLKDKFHFEIISNATNEAY---------------HNKAKAVELLSL 258
Query: 61 QIYKPVCWEQTLHILYERPQG-NHFPRTFECGPGKSL 96
Q+ +PV ++ + + F FE G G L
Sbjct: 259 QLTQPVRYQDCVKSN---NDRVDIF---FELGCGSVL 289
>3im9_A MCAT, MCT, malonyl COA-acyl carrier protein transacylase; fatty
acid synthesis, malonyl-COA: acyl carrier protein TRAN
(MCAT), FABD; 1.46A {Staphylococcus aureus}
Length = 316
Score = 72.6 bits (179), Expect = 1e-16
Identities = 26/97 (26%), Positives = 38/97 (39%), Gaps = 21/97 (21%)
Query: 1 MVPAVEPFALALKKATINDMIIPVHSNVDGKIYRGENKEVSLSVSSLFRDANHIRRQLPK 60
M E F+ + + D PV NV+ + D I+ + K
Sbjct: 211 MKVIEEDFSSYINQFEWRDAKFPVVQNVNAQGE---------------TDKEVIKSNMVK 255
Query: 61 QIYKPVCWEQTLHILYERPQG-NHFPRTFECGPGKSL 96
Q+Y PV + + L + QG +HF E GPGK L
Sbjct: 256 QLYSPVQFINSTEWLID--QGVDHF---IEIGPGKVL 287
>3g87_A Malonyl COA-acyl carrier protein transacylase; ssgcid, niaid,
decode biostructures, dried seaweed, acyltran
transferase; 2.30A {Burkholderia pseudomallei}
Length = 394
Score = 72.7 bits (179), Expect = 1e-16
Identities = 26/108 (24%), Positives = 41/108 (37%), Gaps = 17/108 (15%)
Query: 1 MVPAVEPFALALKKATINDMIIPVHSNVDGKIYRGENKEVSLSVSSLFRDANHIRRQLPK 60
M PA + FA L+ + D IPV SNV + Y + L +
Sbjct: 200 MRPAQQAFAAHLQSFRLADPAIPVISNVSARPYENGR----------------VSEGLAQ 243
Query: 61 QIYKPVCWEQTLHILYERPQGNHFPRTF-ECGPGKSLVTILNQVNKKA 107
QI PV W +++ L F E G G L +++ + ++
Sbjct: 244 QIASPVRWCESIRYLLALAAERGEAIEFTELGHGDVLTRLVHTIRRQT 291
>2cuy_A Malonyl COA-[acyl carrier protein] transacylase; transferase,
structural genomics, NPPSFA; 2.10A {Thermus
thermophilus}
Length = 305
Score = 72.1 bits (178), Expect = 2e-16
Identities = 26/97 (26%), Positives = 36/97 (37%), Gaps = 21/97 (21%)
Query: 1 MVPAVEPFALALKKATINDMIIPVHSNVDGKIYRGENKEVSLSVSSLFRDANHIRRQLPK 60
M PA + A L + + PV+SNV + D IR L +
Sbjct: 198 MAPARKRLAEDLAQVPLRRPRFPVYSNVTARPE---------------EDPERIRALLLE 242
Query: 61 QIYKPVCWEQTLHILYERPQG-NHFPRTFECGPGKSL 96
QI PV W + L + +G F E G G+ L
Sbjct: 243 QITAPVRWVEILRDMEA--RGVKRF---LEFGSGEVL 274
>1nm2_A Malonyl COA:acyl carrier protein malonyltransfera; alpha/beta
hydrolase-like core; 2.00A {Streptomyces coelicolor}
SCOP: c.19.1.1 d.58.23.1 PDB: 2cdh_4 2cf2_B
Length = 317
Score = 72.2 bits (178), Expect = 2e-16
Identities = 24/97 (24%), Positives = 33/97 (34%), Gaps = 21/97 (21%)
Query: 1 MVPAVEPFALALKKATINDMIIPVHSNVDGKIYRGENKEVSLSVSSLFRDANHIRRQLPK 60
M PAV+ A A K T D + SN DG+ + +L
Sbjct: 206 MAPAVDKLAEAAKALTPADPKVTYVSNKDGRAV---------------ASGTEVLDRLVG 250
Query: 61 QIYKPVCWEQTLHILYERPQG-NHFPRTFECGPGKSL 96
Q+ PV W+ + E G E PG +L
Sbjct: 251 QVANPVRWDLCMETFKE--LGVTAI---IEVCPGGTL 282
>3qat_A Malonyl COA-acyl carrier protein transacylase; seattle structural
genomics center for infectious disease, S bartonella,
CAT-scratch disease; 1.60A {Bartonella henselae}
Length = 318
Score = 71.0 bits (175), Expect = 4e-16
Identities = 24/97 (24%), Positives = 32/97 (32%), Gaps = 21/97 (21%)
Query: 1 MVPAVEPFALALKKATINDMIIPVHSNVDGKIYRGENKEVSLSVSSLFRDANHIRRQLPK 60
M PA AL I+P+ +NV D I L +
Sbjct: 211 MQPAANAMKNALLTVNKTAPIVPLIANVSVIPE---------------SDPERIVSLLVQ 255
Query: 61 QIYKPVCWEQTLHILYERPQG-NHFPRTFECGPGKSL 96
Q+ V W +T+ + G N FE G GK L
Sbjct: 256 QVTGRVRWRETIEWISA--NGVNTL---FEIGSGKVL 287
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 62.0 bits (150), Expect = 1e-12
Identities = 30/116 (25%), Positives = 41/116 (35%), Gaps = 38/116 (32%)
Query: 1 MVPAVEPFALALKKATI----NDMIIPVHSNVDGKIYRGENKEVSLS-VSSLFRDANHIR 55
+VPA + L K + D+ IPV+ DG R + +S V + R
Sbjct: 432 LVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRL----- 486
Query: 56 RQLPKQIYKPVCWEQTL-----HILYERPQGNHFPRTFECGPGK-SLVTILNQVNK 105
PV WE T HIL + GPG S + +L NK
Sbjct: 487 ---------PVKWETTTQFKATHIL-------------DFGPGGASGLGVLTHRNK 520
Score = 37.3 bits (86), Expect = 4e-04
Identities = 18/84 (21%), Positives = 35/84 (41%), Gaps = 24/84 (28%)
Query: 42 LSVSSLFRDA--NHIRR---QLPKQIYKPVCWEQTLHI-LYERPQGNHFPRTF-ECGPGK 94
LS+S+L ++ +++ + LP + + I L N + GP +
Sbjct: 339 LSISNLTQEQVQDYVNKTNSHLPA--------GKQVEISLV-----NG-AKNLVVSGPPQ 384
Query: 95 SLVTILNQVNK-KA--GDSAAKVP 115
SL + + K KA G +++P
Sbjct: 385 SLYGLNLTLRKAKAPSGLDQSRIP 408
>2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl
reductase, ketoacyl synthase, ketoacyl reductase; HET:
FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G*
Length = 2060
Score = 46.6 bits (110), Expect = 3e-07
Identities = 19/96 (19%), Positives = 28/96 (29%), Gaps = 21/96 (21%)
Query: 1 MVPAVEPFALALKKATIN--DMIIPVHSNVDGKIYRGENKEVSLSVSSLFRDANHIRRQL 58
+ A + I ++IPV+ G+ R D + I +
Sbjct: 426 LAGAHAHILGDVDDMKIPASSLVIPVYDTKTGQDLRELG------------DEDIIPELV 473
Query: 59 PKQIYKPVCWEQTLHILYERPQGNHFPRTFECGPGK 94
Y PV WE P H + GPG
Sbjct: 474 RMITYDPVNWETATV----FPDATHI---VDFGPGG 502
>2uv8_G Fatty acid synthase subunit beta (FAS1); fatty acid biosynthesis,
malonyl/palmitoyl transferase, phosphopantetheine,
transferase; HET: GVL FMN; 3.10A {Saccharomyces
cerevisiae} PDB: 2vkz_G* 3hmj_G*
Length = 2051
Score = 46.2 bits (109), Expect = 4e-07
Identities = 23/99 (23%), Positives = 34/99 (34%), Gaps = 27/99 (27%)
Query: 1 MVPAVEPFALALKKATI----NDMIIPVHSNVDGKIYRGENKEVSLSVSSLFRDANHIRR 56
+VPA + L K + D+ IPV+ DG R + I
Sbjct: 432 LVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGS--------------ISE 477
Query: 57 QLPKQIY-KPVCWEQTLHILYERPQGNHFPRTFECGPGK 94
++ I PV WE T + + H + GPG
Sbjct: 478 RIVDCIIRLPVKWETTT-----QFKATHI---LDFGPGG 508
Score = 25.0 bits (54), Expect = 8.4
Identities = 9/88 (10%), Positives = 20/88 (22%), Gaps = 19/88 (21%)
Query: 1 MVPAVEPFALALKKATINDMIIPVHSNV-------------------DGKIYRGENKEVS 41
+ P + + +P HS + K+ R K +
Sbjct: 1953 VKPRPLKLERGFACIPLVGISVPFHSTYLMNGVKPFKSFLKKNIIKENVKVARLAGKYIP 2012
Query: 42 LSVSSLFRDANHIRRQLPKQIYKPVCWE 69
+ F+ + + E
Sbjct: 2013 NLTAKPFQVTKEYFQDVYDLTGSEPIKE 2040
>4amm_A DYNE8; transferase; 1.40A {Micromonospora chersina} PDB: 4amn_A
4amp_A 4amo_A
Length = 401
Score = 30.0 bits (68), Expect = 0.16
Identities = 11/36 (30%), Positives = 13/36 (36%)
Query: 1 MVPAVEPFALALKKATINDMIIPVHSNVDGKIYRGE 36
M PA E A + PV S V G + E
Sbjct: 282 MAPAAEALRRAAGRLPWRRPERPVASTVTGAWWADE 317
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.4 bits (65), Expect = 0.24
Identities = 15/84 (17%), Positives = 28/84 (33%), Gaps = 20/84 (23%)
Query: 2 VPAVEPFALALKKATINDMIIPV----HSNVDGKIYRGENKEVSLSVSSLFRDANHIRRQ 57
V P L++ +I D + H N D K+ + S++ L + R+
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATWDNWKHVNCD-KL----TTIIESSLNVL--EPAEYRKM 374
Query: 58 ------LPKQIYKPVCWEQTLHIL 75
P + P L ++
Sbjct: 375 FDRLSVFPPSAHIP---TILLSLI 395
>1gjw_A Maltodextrin glycosyltransferase; alpha-amylase,
maltosyltransferase; HET: MAL GLC; 2.1A {Thermotoga
maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1gju_A*
Length = 637
Score = 25.2 bits (54), Expect = 7.5
Identities = 7/63 (11%), Positives = 20/63 (31%), Gaps = 17/63 (26%)
Query: 43 SVSSLFRDANHIRRQLPKQI----YKPVCWEQTLHILYERPQGNHFPRTFECGPGKSLVT 98
V + + +R + + ++ + + + YE+ G+ +V
Sbjct: 551 GVLNFIKKLIKVRHEFLDFVLNGKFENLTTKDLVMYSYEK-------------NGQKIVI 597
Query: 99 ILN 101
N
Sbjct: 598 AAN 600
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.412
Gapped
Lambda K H
0.267 0.0732 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,693,716
Number of extensions: 86582
Number of successful extensions: 224
Number of sequences better than 10.0: 1
Number of HSP's gapped: 191
Number of HSP's successfully gapped: 24
Length of query: 116
Length of database: 6,701,793
Length adjustment: 79
Effective length of query: 37
Effective length of database: 4,496,034
Effective search space: 166353258
Effective search space used: 166353258
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.4 bits)