RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13429
         (116 letters)



>d1mlaa1 c.19.1.1 (A:3-127,A:198-307) Catalytic domain of
           malonyl-CoA ACP transacylase FabD {Escherichia coli
           [TaxId: 562]}
          Length = 235

 Score = 54.8 bits (131), Expect = 8e-11
 Identities = 31/115 (26%), Positives = 47/115 (40%), Gaps = 19/115 (16%)

Query: 1   MVPAVEPFALALKKATINDMIIPVHSNVDGKIYRGENKEVSLSVSSLFRDANHIRRQLPK 60
           M PA +  A+ L K T N   +PV +NVD K                  + + IR  L +
Sbjct: 133 MKPAADKLAVELAKITFNAPTVPVVNNVDVKCET---------------NGDAIRDALVR 177

Query: 61  QIYKPVCWEQTLHILYERPQGNHFPRTFECGPGKSLVTILNQVNKKAGDSAAKVP 115
           Q+Y PV W +++  +            +E GPGK L  +  ++      SA   P
Sbjct: 178 QLYNPVQWTKSVEYMAA----QGVEHLYEVGPGKVLTGLTKRIVDTLTASALNEP 228


>d1nm2a1 c.19.1.1 (A:0-133,A:196-314) Catalytic domain of
           malonyl-CoA ACP transacylase FabD {Streptomyces
           coelicolor A3(2) [TaxId: 100226]}
          Length = 253

 Score = 29.1 bits (64), Expect = 0.11
 Identities = 23/108 (21%), Positives = 34/108 (31%), Gaps = 21/108 (19%)

Query: 1   MVPAVEPFALALKKATINDMIIPVHSNVDGKIYRGENKEVSLSVSSLFRDANHIRRQLPK 60
           M PAV+  A A K  T  D  +   SN DG+                      +  +L  
Sbjct: 144 MAPAVDKLAEAAKALTPADPKVTYVSNKDGRAVA---------------SGTEVLDRLVG 188

Query: 61  QIYKPVCWEQTLHILYERPQGNHFPRTF-ECGPGKSLVTILNQVNKKA 107
           Q+  PV W+  +    E            E  PG +L  +  +     
Sbjct: 189 QVANPVRWDLCMETFKELG-----VTAIIEVCPGGTLTGLAKRALPGV 231


>d3sila_ b.68.1.1 (A:) Salmonella sialidase {Salmonella typhimurium,
           strain lt2 [TaxId: 90371]}
          Length = 379

 Score = 26.1 bits (56), Expect = 1.1
 Identities = 13/90 (14%), Positives = 29/90 (32%), Gaps = 16/90 (17%)

Query: 11  ALKKATINDMIIPVHSNVDGKIYRGENKEVSLSV---SSLFRDANHIRRQLPKQI----- 62
           +       + ++  HS+   K    +     +S+   +    +   I    PK       
Sbjct: 280 STITIPSGNKLVAAHSSAQNK--NNDYTRSDISLYAHNLYSGEVKLIDDFYPKVGNASGA 337

Query: 63  ------YKPVCWEQTLHILYERPQGNHFPR 86
                 Y+    ++TL+++YE      F  
Sbjct: 338 GYSCLSYRKNVDKETLYVVYEANGSIEFQD 367


>d1ro7a_ c.130.1.1 (A:) Alpha-2,3/8-sialyltransferase CstII
           {Campylobacter jejuni [TaxId: 197]}
          Length = 258

 Score = 24.2 bits (52), Expect = 4.9
 Identities = 7/28 (25%), Positives = 11/28 (39%), Gaps = 1/28 (3%)

Query: 7   PFALALKKATINDMIIPVHSNVDGKIYR 34
            F +  K     D++IP      GK  +
Sbjct: 230 NFIIQEKNNYTKDILIPSSE-AYGKFSK 256


>d1lkia_ a.26.1.1 (A:) Leukemia inhibitory factor (LIF) {Mouse
          (Mus musculus) [TaxId: 10090]}
          Length = 172

 Score = 23.8 bits (51), Expect = 6.5
 Identities = 15/43 (34%), Positives = 17/43 (39%), Gaps = 6/43 (13%)

Query: 52 NHIRRQLPKQIYKPVCWEQTLHILYERPQGNHFPRTFE--CGP 92
          N I+ QL  Q+         L I Y   QG  FP   E  C P
Sbjct: 16 NQIKNQL-AQLNGSA---NALFISYYTAQGEPFPNNVEKLCAP 54


>d2ghra1 c.23.16.8 (A:17-297) Homoserine O-succinyltransferase HTS
           (MetA) {Bacillus cereus [TaxId: 1396]}
          Length = 281

 Score = 23.4 bits (50), Expect = 8.3
 Identities = 7/45 (15%), Positives = 16/45 (35%)

Query: 63  YKPVCWEQTLHILYERPQGNHFPRTFECGPGKSLVTILNQVNKKA 107
           ++ V + + L  + E  + N       C   ++ +     V K  
Sbjct: 99  FEEVDYWEELKRIMEYSKTNVTSTLHICWGAQAGLYHHYGVQKYP 143


>d1of5a_ d.17.4.2 (A:) NTF2-like domain of mRNA export factor MEX67
           {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 221

 Score = 23.0 bits (49), Expect = 10.0
 Identities = 6/19 (31%), Positives = 9/19 (47%)

Query: 83  HFPRTFECGPGKSLVTILN 101
            F RT+   P  + V I +
Sbjct: 177 SFDRTWVIVPMNNSVIIAS 195


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.136    0.412 

Gapped
Lambda     K      H
   0.267   0.0439    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 419,025
Number of extensions: 17227
Number of successful extensions: 34
Number of sequences better than 10.0: 1
Number of HSP's gapped: 34
Number of HSP's successfully gapped: 8
Length of query: 116
Length of database: 2,407,596
Length adjustment: 73
Effective length of query: 43
Effective length of database: 1,405,306
Effective search space: 60428158
Effective search space used: 60428158
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.6 bits)