BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1343
(337 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5R761|SNUT2_PONAB U4/U6.U5 tri-snRNP-associated protein 2 OS=Pongo abelii GN=USP39
PE=2 SV=1
Length = 565
Score = 422 bits (1084), Expect = e-117, Method: Compositional matrix adjust.
Identities = 211/326 (64%), Positives = 253/326 (77%), Gaps = 12/326 (3%)
Query: 1 ALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEMLQ 60
AL +V PLR+YFL E NY +KRPPGD FLLVQRFGELMRKLWNPRNFK+HVSPHEMLQ
Sbjct: 242 ALSNVPPLRNYFLEEDNYKNIKRPPGDIMFLLVQRFGELMRKLWNPRNFKAHVSPHEMLQ 301
Query: 61 AVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDSSIVYKTFLGSMKVKTRKIP 120
AVVL S+K FQ T+Q D +DFLSWFLN LH AL GTKKK +IV F GSM++ T+K+P
Sbjct: 302 AVVLCSKKTFQITKQGDGVDFLSWFLNALHSALGGTKKKKKTIVTDVFQGSMRIFTKKLP 361
Query: 121 PVELEEKVRQRLLLTEEYKETETESPFLYLTCDLPPPPLFKDEVLENIIPQVNLYTILTK 180
+L + +++LL +EY+ET ES F+YLT DLP PL+KDE + IIPQV L+ IL K
Sbjct: 362 HPDLPAEEKEQLLHNDEYQETMVESTFMYLTLDLPTAPLYKDEKEQLIIPQVPLFNILAK 421
Query: 181 FNNESEKEYKTYKENFLKRFEITSLPPYLILYVKRFTKNTFFVEKNPTIVNFPVKNVDFG 240
FN +EKEYKTYKENFLKRF++T LPPYLI +KRFTKN FFVEKNPTIVNFP+ NVD
Sbjct: 422 FNGITEKEYKTYKENFLKRFQLTKLPPYLIFCIKRFTKNNFFVEKNPTIVNFPITNVDLR 481
Query: 241 DILTPEVKAKYESTMYDLVKAKYESTMYDLVANIVHDGEPSNGTYRVHLYHKGIGKWYEI 300
+ L+ E V+A +E+T YDL+ANIVHDG+PS G+YR+H+ H G GKWYE+
Sbjct: 482 EYLSEE------------VQAVHENTTYDLIANIVHDGKPSEGSYRIHVLHHGTGKWYEL 529
Query: 301 QDLHVTDILPQMITLTEAYIQIYELR 326
QDL VTDILPQMITL+EAYIQI++ R
Sbjct: 530 QDLQVTDILPQMITLSEAYIQIWKRR 555
>sp|Q3TIX9|SNUT2_MOUSE U4/U6.U5 tri-snRNP-associated protein 2 OS=Mus musculus GN=Usp39
PE=2 SV=2
Length = 564
Score = 420 bits (1080), Expect = e-117, Method: Compositional matrix adjust.
Identities = 210/326 (64%), Positives = 253/326 (77%), Gaps = 12/326 (3%)
Query: 1 ALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEMLQ 60
AL +V PLR+YFL E NY +KRPPGD FLLVQRFGELMRKLWNPRNFK+HVSPHEMLQ
Sbjct: 241 ALSNVPPLRNYFLEEDNYKNIKRPPGDIMFLLVQRFGELMRKLWNPRNFKAHVSPHEMLQ 300
Query: 61 AVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDSSIVYKTFLGSMKVKTRKIP 120
AVVL S+K FQ T+Q D +DFLSWFLN LH AL GTKKK +IV F GSM++ T+K+P
Sbjct: 301 AVVLCSKKTFQITKQGDGVDFLSWFLNALHSALGGTKKKKKTIVNDVFQGSMRIFTKKLP 360
Query: 121 PVELEEKVRQRLLLTEEYKETETESPFLYLTCDLPPPPLFKDEVLENIIPQVNLYTILTK 180
+L + +++LL +EY+ET ES F+YLT DLP PL+KDE + IIPQV L+ IL K
Sbjct: 361 HPDLPAEEKEQLLHNDEYQETMVESTFMYLTLDLPTAPLYKDEKEQLIIPQVPLFNILAK 420
Query: 181 FNNESEKEYKTYKENFLKRFEITSLPPYLILYVKRFTKNTFFVEKNPTIVNFPVKNVDFG 240
FN +EKEYKTYKENFLKRF++T LPPYLI +KRFTKN FFVEKNPTIVNFP+ NVD
Sbjct: 421 FNGITEKEYKTYKENFLKRFQLTKLPPYLIFCIKRFTKNNFFVEKNPTIVNFPITNVDLR 480
Query: 241 DILTPEVKAKYESTMYDLVKAKYESTMYDLVANIVHDGEPSNGTYRVHLYHKGIGKWYEI 300
+ L+ E V+A +++T YDL+ANIVHDG+PS G+YR+H+ H G GKWYE+
Sbjct: 481 EYLSEE------------VQAVHKNTTYDLIANIVHDGKPSEGSYRIHVLHHGTGKWYEL 528
Query: 301 QDLHVTDILPQMITLTEAYIQIYELR 326
QDL VTDILPQMITL+EAYIQI++ R
Sbjct: 529 QDLQVTDILPQMITLSEAYIQIWKRR 554
>sp|Q53GS9|SNUT2_HUMAN U4/U6.U5 tri-snRNP-associated protein 2 OS=Homo sapiens GN=USP39
PE=1 SV=2
Length = 565
Score = 420 bits (1079), Expect = e-117, Method: Compositional matrix adjust.
Identities = 210/326 (64%), Positives = 253/326 (77%), Gaps = 12/326 (3%)
Query: 1 ALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEMLQ 60
AL +V PLR+YFL E NY +KRPPGD FLLVQRFGELMRKLWNPRNFK+HVSPHEMLQ
Sbjct: 242 ALSNVPPLRNYFLEEDNYKNIKRPPGDIMFLLVQRFGELMRKLWNPRNFKAHVSPHEMLQ 301
Query: 61 AVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDSSIVYKTFLGSMKVKTRKIP 120
AVVL S+K FQ T+Q D +DFLSWFLN LH AL GTKKK +IV F GSM++ T+K+P
Sbjct: 302 AVVLCSKKTFQITKQGDGVDFLSWFLNALHSALGGTKKKKKTIVTDVFQGSMRIFTKKLP 361
Query: 121 PVELEEKVRQRLLLTEEYKETETESPFLYLTCDLPPPPLFKDEVLENIIPQVNLYTILTK 180
+L + +++LL +EY+ET ES F+YLT DLP PL+KDE + IIPQV L+ IL K
Sbjct: 362 HPDLPAEEKEQLLHNDEYQETMVESTFMYLTLDLPTAPLYKDEKEQLIIPQVPLFNILAK 421
Query: 181 FNNESEKEYKTYKENFLKRFEITSLPPYLILYVKRFTKNTFFVEKNPTIVNFPVKNVDFG 240
FN +EKEYKTYKENFLKRF++T LPPYLI +KRFTKN FFVEKNPTIVNFP+ NVD
Sbjct: 422 FNGITEKEYKTYKENFLKRFQLTKLPPYLIFCIKRFTKNNFFVEKNPTIVNFPITNVDLR 481
Query: 241 DILTPEVKAKYESTMYDLVKAKYESTMYDLVANIVHDGEPSNGTYRVHLYHKGIGKWYEI 300
+ L+ E V+A +++T YDL+ANIVHDG+PS G+YR+H+ H G GKWYE+
Sbjct: 482 EYLSEE------------VQAVHKNTTYDLIANIVHDGKPSEGSYRIHVLHHGTGKWYEL 529
Query: 301 QDLHVTDILPQMITLTEAYIQIYELR 326
QDL VTDILPQMITL+EAYIQI++ R
Sbjct: 530 QDLQVTDILPQMITLSEAYIQIWKRR 555
>sp|Q9USR2|UBP10_SCHPO Probable mRNA-splicing protein ubp10 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ubp10 PE=3 SV=1
Length = 502
Score = 233 bits (595), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 135/330 (40%), Positives = 195/330 (59%), Gaps = 33/330 (10%)
Query: 2 LCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEMLQA 61
L HV P R+YFL + N+ D+ LVQR L+RKLWN + FKSHVSP E++Q
Sbjct: 196 LAHVKPFRNYFLLK-NF--------DNCPQLVQRLAILIRKLWNHKAFKSHVSPQELIQE 246
Query: 62 VVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKK---KDSSIVYKTFLGSMKVKTRK 118
V + S K++ EQ DP++FLSWFLNTLH L G K K +SIV+ +F G ++++++K
Sbjct: 247 VTVLSHKKYSINEQKDPVEFLSWFLNTLHNCLGGKKSTIAKPTSIVHYSFQGFVRIESQK 306
Query: 119 IPPVELEEKVRQRLLLTEEYKETETESPFLYLTCDLPPPPLFKDEVLENIIPQVNLYTIL 178
I + EK Q + + +T PFLYLT DLPP P+F+DE NIIPQV L IL
Sbjct: 307 IR--QHAEKGEQVVFTGDRVIQTNV-VPFLYLTLDLPPKPIFQDEFEGNIIPQVELKEIL 363
Query: 179 TKFNNESEKEYKTYKENFLKRFEITSLPPYLILYVKRFTKNTFFVEKNPTIVNFPVKNVD 238
K+N +E + +RF + + PPY I ++KRF KN +F E+N TIV FP+ + D
Sbjct: 364 NKYNGVHTQELAGMR----RRFHLMTAPPYFIFHIKRFMKNNYFTERNQTIVTFPLDDFD 419
Query: 239 FGDILTPEVKAKYESTMYDLVKAKYESTMYDLVANIVHD----GEPSNGTYRVHLYHKGI 294
++P + + + + ST Y+LVANI+H+ E +R+ + +
Sbjct: 420 ----MSPFIDDSFIQSNPKI------STKYNLVANIIHESVTHAEEEFHNFRIQIRNPST 469
Query: 295 GKWYEIQDLHVTDILPQMITLTEAYIQIYE 324
KWY+IQDL+V +I MI L E++IQ++E
Sbjct: 470 NKWYQIQDLYVEEISSDMIRLGESFIQLWE 499
>sp|P43589|SAD1_YEAST Pre-mRNA-splicing factor SAD1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=SAD1 PE=1 SV=1
Length = 448
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 90/338 (26%), Positives = 153/338 (45%), Gaps = 75/338 (22%)
Query: 2 LCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEMLQA 61
+ H+ P+RD+FL +N+ D+ ++R ++K+W+P+ FK H+S + +
Sbjct: 168 ISHMVPVRDHFL--LNHF-------DNQGEFIKRLSICVKKIWSPKLFKHHLSVDDFVSY 218
Query: 62 VVLWSRKQFQFTEQSDPID---FLSWFLNTLHRALNGTKKKDSSIVYKTFLGSMKVKTRK 118
+ + R+ +PID FL W N + + N K SI+ + G +K+ +
Sbjct: 219 LKV--REGLNL----NPIDPRLFLLWLFNKICSSSNDLK----SILNHSCKGKVKIAKVE 268
Query: 119 IPPVELEEKVRQRLLLTEEYKETETESPFLYLTCDLPPPPLFKDEVLENIIPQVNLYTIL 178
P E E V ++++ PF LT DLP F+D + +PQ+N+ +L
Sbjct: 269 NKP-EASESVTGKVIV----------KPFWVLTLDLPEFSPFEDGNSVDDLPQINITKLL 317
Query: 179 TKFNNESEKEYKTYKENFLKRFEITSLPPYLILYVKRFTKNTFFVEKNPTIVNFPVKNVD 238
TKF T FE+T LP +LI + RF +N+ + PVKN +
Sbjct: 318 TKFTKSRSSSTSTV-------FELTRLPQFLIFHFNRFDRNS----------DHPVKNRN 360
Query: 239 FGDILTPEVKAKYESTMYDLVKAKYESTMYDLVANIVH--------DGEPSNGTYRVH-- 288
+ ++ S + +++ KY L AN+VH DG NG + H
Sbjct: 361 -------QTLVEFSSEL-EILHVKYR-----LKANVVHVVIKQPSTDGNAFNGDEKSHWI 407
Query: 289 --LYHKGIGKWYEIQDLHVTDILPQMITLTEAYIQIYE 324
LY KW EI ++ T+ +++ L E +IQ++E
Sbjct: 408 TQLYDNKSEKWIEIDGINTTEREAELLFLKETFIQVWE 445
>sp|O75604|UBP2_HUMAN Ubiquitin carboxyl-terminal hydrolase 2 OS=Homo sapiens GN=USP2
PE=1 SV=2
Length = 605
Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 83/341 (24%), Positives = 145/341 (42%), Gaps = 32/341 (9%)
Query: 1 ALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLW--NPRNFKSHVSPHEM 58
L + LRDY L+ + Y R ++ LV+ F +L++ +W +P + VSP E
Sbjct: 284 CLSNTRELRDYCLQRL-YMRDLHHGSNAHTALVEEFAKLIQTIWTSSPNDV---VSPSEF 339
Query: 59 LQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDSSIVYKTFLGSMKVKTRK 118
+ ++ + + +Q D +FL + L+ LH +N + S K R+
Sbjct: 340 KTQIQRYAPRFVGYNQQ-DAQEFLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDEKGRQ 398
Query: 119 IPPVELE-EKVRQRLLLTEEYKETETESPFLYLTCDLPPPPLFKDEVLENIIPQVNLYTI 177
+ LE E R L + K + T + Y + P + + P+V L
Sbjct: 399 MWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLSLPIAKRGYPEVTLMDC 458
Query: 178 LTKFNNES-----EK---EYKTYKENFLKRFEITSLPPYLILYVKRFTKNTFFVEKNPTI 229
+ F E EK ++ +K+F I P L+L++KRF+++ K T
Sbjct: 459 MRLFTKEDVLDGDEKPTCCRCRGRKRCIKKFSIQRFPKILVLHLKRFSESRIRTSKLTTF 518
Query: 230 VNFPVKNVDFGDILTPEVKAKYESTMYDLVKAKYESTMYDLVANIVHDGEPSNGTYRVHL 289
VNFP++++D + + E+T + +Y+L A H G G Y +
Sbjct: 519 VNFPLRDLDLREFAS-------ENTNH---------AVYNLYAVSNHSGTTMGGHYTAYC 562
Query: 290 YHKGIGKWYEIQDLHVTDILPQMITLTEAYIQIYELRTTPS 330
G G+W+ D VT + + ++AY+ YEL + PS
Sbjct: 563 RSPGTGEWHTFNDSSVTPMSSSQVRTSDAYLLFYELASPPS 603
>sp|Q91W36|UBP3_MOUSE Ubiquitin carboxyl-terminal hydrolase 3 OS=Mus musculus GN=Usp3
PE=2 SV=1
Length = 520
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 85/323 (26%), Positives = 131/323 (40%), Gaps = 45/323 (13%)
Query: 23 RPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEMLQAVVLWS-RKQFQFTEQSDPIDF 81
R GDS+ LV+ F + + LW + ++ SP + V+W F+ +Q D +F
Sbjct: 209 RSQGDSNVSLVEEFRKTLCALW--QGSQTAFSPESLF--YVVWKIMPNFRGYQQQDAHEF 264
Query: 82 LSWFLNTLHRALNGTKKKDS-----------SIVYKTFLGSMKVKTRKIPPVELEEKVRQ 130
+ + L+ LH L G S S K + I L+ +V
Sbjct: 265 MRYLLDHLHLELQGGFNGVSRSAILQENSTLSASNKCCINGASTVVTAIFGGILQNEVNC 324
Query: 131 RLLLTEEYKETETESPFLYLTCDLPPPPLFKDEVLENIIPQVNLYTILTKFNNESE-KEY 189
+ TE K PFL L+ D+P K + P +L L F + E E
Sbjct: 325 LICGTESRKF----DPFLDLSLDIPSQFRSKRSKNQENGPVCSLRDCLRSFTDLEELDET 380
Query: 190 KTY-------KENFLKRFEITSLPPYLILYVKRFTKNTFFVEKNPTIVNFPVKNVDFGD- 241
+ Y K+ K+F I LP L L++KRF + K T V FP++ +D
Sbjct: 381 ELYMCHKCKKKQKSTKKFWIQKLPKALCLHLKRFHWTAYLRNKVDTYVQFPLRGLDMKCY 440
Query: 242 ILTPEVKAKYESTMYDLVKAKYESTMYDLVANIVHDGEP-SNGTYRVHLYHKGIGKWYEI 300
+L PE + +S +YDL A +VH G +G Y + H+ G+W+
Sbjct: 441 LLEPE-------------NSGPDSCLYDLAAVVVHHGSGVGSGHYTAYAVHE--GRWFHF 485
Query: 301 QDLHVTDILPQMITLTEAYIQIY 323
D VT + + +AYI Y
Sbjct: 486 NDSTVTVTDEETVGKAKAYILFY 508
>sp|Q9Y6I4|UBP3_HUMAN Ubiquitin carboxyl-terminal hydrolase 3 OS=Homo sapiens GN=USP3
PE=1 SV=2
Length = 520
Score = 72.8 bits (177), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 85/323 (26%), Positives = 131/323 (40%), Gaps = 45/323 (13%)
Query: 23 RPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEMLQAVVLWS-RKQFQFTEQSDPIDF 81
R GD++ LV+ F + + LW + ++ SP + V+W F+ +Q D +F
Sbjct: 209 RSQGDNNVSLVEEFRKTLCALW--QGSQTAFSPESLF--YVVWKIMPNFRGYQQQDAHEF 264
Query: 82 LSWFLNTLHRALNGTKKKDS-----------SIVYKTFLGSMKVKTRKIPPVELEEKVRQ 130
+ + L+ LH L G S S K + I L+ +V
Sbjct: 265 MRYLLDHLHLELQGGFNGVSRSAILQENSTLSASNKCCINGASTVVTAIFGGILQNEVNC 324
Query: 131 RLLLTEEYKETETESPFLYLTCDLPPPPLFKDEVLENIIPQVNLYTILTKFNNESE-KEY 189
+ TE K PFL L+ D+P K + P +L L F + E E
Sbjct: 325 LICGTESRKF----DPFLDLSLDIPSQFRSKRSKNQENGPVCSLRDCLRSFTDLEELDET 380
Query: 190 KTY-------KENFLKRFEITSLPPYLILYVKRFTKNTFFVEKNPTIVNFPVKNVDFGD- 241
+ Y K+ K+F I LP L L++KRF + K T V FP++ +D
Sbjct: 381 ELYMCHKCKKKQKSTKKFWIQKLPKVLCLHLKRFHWTAYLRNKVDTYVEFPLRGLDMKCY 440
Query: 242 ILTPEVKAKYESTMYDLVKAKYESTMYDLVANIVHDGEP-SNGTYRVHLYHKGIGKWYEI 300
+L PE + ES +YDL A +VH G +G Y + H+ G+W+
Sbjct: 441 LLEPE-------------NSGPESCLYDLAAVVVHHGSGVGSGHYTAYATHE--GRWFHF 485
Query: 301 QDLHVTDILPQMITLTEAYIQIY 323
D VT + + +AYI Y
Sbjct: 486 NDSTVTLTDEETVVKAKAYILFY 508
>sp|O88623|UBP2_MOUSE Ubiquitin carboxyl-terminal hydrolase 2 OS=Mus musculus GN=Usp2
PE=1 SV=2
Length = 613
Score = 72.0 bits (175), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 80/341 (23%), Positives = 143/341 (41%), Gaps = 32/341 (9%)
Query: 1 ALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLW--NPRNFKSHVSPHEM 58
L + LRDY L+ + Y R + L++ F +L++ +W +P + VSP E
Sbjct: 292 CLSNTRELRDYCLQRL-YMRDLGHTSSAHTALMEEFAKLIQTIWTSSPNDV---VSPSEF 347
Query: 59 LQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDSSIVYKTFLGSMKVKTRK 118
+ ++ +F Q D +FL + L+ LH +N + + + K R+
Sbjct: 348 KTQIQRYA-PRFMGYNQQDAQEFLRFLLDGLHNEVNRVAARPKASPETLDHLPDEEKGRQ 406
Query: 119 IPPVELE-EKVRQRLLLTEEYKETETESPFLYLTCDLPPPPLFKDEVLENIIPQVNLYTI 177
+ LE E R L + K + T + Y + P + + P+V L
Sbjct: 407 MWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLSLPIAKRGYPEVTLMDC 466
Query: 178 LTKFNNES-----EK---EYKTYKENFLKRFEITSLPPYLILYVKRFTKNTFFVEKNPTI 229
+ F E EK ++ +K+F + P L+L++KRF+++ K T
Sbjct: 467 MRLFTKEDILDGDEKPTCCRCRARKRCIKKFSVQRFPKILVLHLKRFSESRIRTSKLTTF 526
Query: 230 VNFPVKNVDFGDILTPEVKAKYESTMYDLVKAKYESTMYDLVANIVHDGEPSNGTYRVHL 289
VNFP++++D + + E+T + +Y+L A H G G Y +
Sbjct: 527 VNFPLRDLDLREFAS-------ENTNH---------AVYNLYAVSNHSGTTMGGHYTAYC 570
Query: 290 YHKGIGKWYEIQDLHVTDILPQMITLTEAYIQIYELRTTPS 330
G+W+ D VT + + ++AY+ YEL + PS
Sbjct: 571 RSPVTGEWHTFNDSSVTPMSSSQVRTSDAYLLFYELASPPS 611
>sp|Q5U349|UBP2_RAT Ubiquitin carboxyl-terminal hydrolase 2 OS=Rattus norvegicus
GN=Usp2 PE=1 SV=1
Length = 618
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 83/359 (23%), Positives = 145/359 (40%), Gaps = 68/359 (18%)
Query: 1 ALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLW--NPRNFKSHVSPHEM 58
L + LRDY L+ + Y R + L++ F +L++ +W +P + VSP E
Sbjct: 297 CLSNTRELRDYCLQRL-YMRDLGHTSSAHTALMEEFAKLIQTIWTSSPNDV---VSPSEF 352
Query: 59 LQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDSSIVYKTFLGSMKVKTRK 118
+ ++ + + +Q D +FL + L+ LH +N +V R
Sbjct: 353 KTQIQRYAPRFVGYNQQ-DAQEFLRFLLDGLHNEVN------------------RVAARP 393
Query: 119 IPPVEL------EEKVRQ-----------RL--LLTEEYKETETESPFLYLTCDLPPPPL 159
P E EEK RQ R+ L + K + T + Y + P
Sbjct: 394 KPSPESLDHLPDEEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWD 453
Query: 160 FKDEVLENIIPQVNLYTILTKFNNES-----EK---EYKTYKENFLKRFEITSLPPYLIL 211
+ + P+V L + F E EK ++ +K+F + P L+L
Sbjct: 454 LSLPIAKRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRCRARKRCIKKFSVQRFPKILVL 513
Query: 212 YVKRFTKNTFFVEKNPTIVNFPVKNVDFGDILTPEVKAKYESTMYDLVKAKYESTMYDLV 271
++KRF+++ K T VNFP++++D + + E+T + +Y+L
Sbjct: 514 HLKRFSESRIRTSKLTTFVNFPLRDLDLREFAS-------ENTNH---------AVYNLY 557
Query: 272 ANIVHDGEPSNGTYRVHLYHKGIGKWYEIQDLHVTDILPQMITLTEAYIQIYELRTTPS 330
A H G G Y + G+W+ D VT + + ++AY+ YEL + PS
Sbjct: 558 AVSNHSGTTMGGHYTAYCRSPVTGEWHTFNDSSVTPMSSSQVRTSDAYLLFYELASPPS 616
>sp|Q2KHV7|UBP2_BOVIN Ubiquitin carboxyl-terminal hydrolase 2 OS=Bos taurus GN=USP2 PE=2
SV=1
Length = 606
Score = 65.5 bits (158), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 79/341 (23%), Positives = 142/341 (41%), Gaps = 32/341 (9%)
Query: 1 ALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLW--NPRNFKSHVSPHEM 58
L + LRDY L+ + Y R + L++ F +L++ +W +P + VSP E
Sbjct: 285 CLSNTRELRDYCLQRL-YLRDLSHSSRAHTALMEEFAKLIQTIWTSSPNDV---VSPSEF 340
Query: 59 LQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDSSIVYKTFLGSMKVKTRK 118
+ ++ + + +Q D +FL + L+ LH +N + S K R+
Sbjct: 341 KTQIQRYAPRFVGYNQQ-DAQEFLRFLLDGLHNEVNRVIARPKSNTENLDHLPDDEKGRQ 399
Query: 119 IPPVELE-EKVRQRLLLTEEYKETETESPFLYLTCDLPPPPLFKDEVLENIIPQVNLYTI 177
+ LE E R L + K + T + Y + P + + P+V L
Sbjct: 400 MWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLSLPITKRGYPEVTLMDC 459
Query: 178 LTKFNNES-----EK---EYKTYKENFLKRFEITSLPPYLILYVKRFTKNTFFVEKNPTI 229
+ F E EK ++ +K+F I P L+L++KRF+++ K
Sbjct: 460 MRLFTKEDVLDGDEKPTCCRCRARKRCIKKFSIQRFPKILVLHLKRFSESRIRTSKLTAF 519
Query: 230 VNFPVKNVDFGDILTPEVKAKYESTMYDLVKAKYESTMYDLVANIVHDGEPSNGTYRVHL 289
VNFP++++D + + E+T + +Y+L A H G G Y +
Sbjct: 520 VNFPLRDLDLREFAS-------ENTNH---------AVYNLYAVSNHSGTTMGGHYTAYC 563
Query: 290 YHKGIGKWYEIQDLHVTDILPQMITLTEAYIQIYELRTTPS 330
G+W+ D V+ + + ++AY+ YEL + PS
Sbjct: 564 RSPVTGEWHTFNDSSVSPMSSSQVRTSDAYLLFYELASPPS 604
>sp|B2GUZ1|UBP4_RAT Ubiquitin carboxyl-terminal hydrolase 4 OS=Rattus norvegicus
GN=Usp4 PE=1 SV=1
Length = 961
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 64/138 (46%), Gaps = 15/138 (10%)
Query: 198 KRFEITSLPPYLILYVKRFTKNTFFVEKNPTIVNFPVKNVDFGDILTPEVKAKYESTMYD 257
K+F++ SLP L++++KRF+ N ++ +K T+V FPV+ ++ + + Y
Sbjct: 808 KKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPVRALNMSEFVCDRAARPY------ 861
Query: 258 LVKAKYESTMYDLVANIVHDGEPSNGTYRVHLYHKGIGKWYEIQDLHVTDILPQMITLTE 317
+YDL+A H G G Y + ++ GKWY D V+ I
Sbjct: 862 ---------VYDLIAVSNHYGAMGVGHYTAYAKNRLNGKWYYFDDSSVSLASEDQIVTKA 912
Query: 318 AYIQIYELRTTPSPTAMS 335
AY+ Y+ R P+ S
Sbjct: 913 AYVLFYQRRDDECPSTSS 930
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 82/178 (46%), Gaps = 18/178 (10%)
Query: 1 ALCHVTPLRDYFLREINYARVKRP-PGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEML 59
L + PL +YFL++ A + R P + + + EL++++W+ R+ +HV+P M
Sbjct: 319 CLSNTGPLTEYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRD--THVAPR-MF 375
Query: 60 QAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKK-----------DSSIVYKTF 108
+ V QF +Q D + L++ L+ LH LN KKK ++V K
Sbjct: 376 KTQVGRFAPQFSGYQQQDSQELLAFILDGLHEDLNRVKKKPYLEPKDANGRPDAVVAKEA 435
Query: 109 LGSMKVKTRKIPPVELEEKVRQRLLLTEEYKETETESPFLYLTCDLPPPPLFKDEVLE 166
+ +++ + + L+ E K + T PF YLT P PL KD ++E
Sbjct: 436 WENHRLRNDSVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLTL---PLPLKKDRIME 490
>sp|A6QR55|UBP4_BOVIN Ubiquitin carboxyl-terminal hydrolase 4 OS=Bos taurus GN=USP4 PE=2
SV=1
Length = 963
Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 62/129 (48%), Gaps = 15/129 (11%)
Query: 198 KRFEITSLPPYLILYVKRFTKNTFFVEKNPTIVNFPVKNVDFGDILTPEVKAKYESTMYD 257
K+F++ SLP L++++KRF+ N ++ +K T+V FPV+ ++ + + Y
Sbjct: 810 KKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPVRGLNMSEFVCDPSARPY------ 863
Query: 258 LVKAKYESTMYDLVANIVHDGEPSNGTYRVHLYHKGIGKWYEIQDLHVTDILPQMITLTE 317
+YDL+A H G G Y + +K GKWY D +V+ I
Sbjct: 864 ---------VYDLIAVSNHYGAMGVGHYTAYAKNKLNGKWYYFDDSNVSLACEDQIVTKA 914
Query: 318 AYIQIYELR 326
AY+ Y+ R
Sbjct: 915 AYVLFYQRR 923
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 82/178 (46%), Gaps = 18/178 (10%)
Query: 1 ALCHVTPLRDYFLREINYARVKRP-PGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEML 59
L + PL DYFL++ A + R P + + + EL++++W+ R+ +HV+P M
Sbjct: 319 CLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRD--AHVAPR-MF 375
Query: 60 QAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKK-----------DSSIVYKTF 108
+ V QF +Q D + L++ L+ LH LN KKK ++V K
Sbjct: 376 KTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAKEA 435
Query: 109 LGSMKVKTRKIPPVELEEKVRQRLLLTEEYKETETESPFLYLTCDLPPPPLFKDEVLE 166
+ +++ + + L+ E K + T PF YLT P PL KD V+E
Sbjct: 436 WENHRLRNDSVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLTL---PLPLKKDRVME 490
>sp|Q6P8X6|UBP50_MOUSE Putative ubiquitin carboxyl-terminal hydrolase 50 OS=Mus musculus
GN=Usp50 PE=2 SV=1
Length = 390
Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 78/336 (23%), Positives = 128/336 (38%), Gaps = 44/336 (13%)
Query: 1 ALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEMLQ 60
LC V+PL +YFL +K+ + + F LM +W VSP L
Sbjct: 62 CLCSVSPLVEYFLSGKYITALKKDCSE----VTTAFAYLMTDMW--LGDSDCVSPEIFLS 115
Query: 61 AVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDSSIVYKTFLGSMKVKTRKIP 120
AV + T+Q D +FL + LN LH AL KK V + G + RK+P
Sbjct: 116 AVGSLYPAFLKKTQQ-DAQEFLIYVLNELHEAL---KKHCRRRVNEKRTG--QSCCRKVP 169
Query: 121 PVE-------LEEKVRQRLLLTEEYKETETESPFLYLTCDLPPPPLFK---DEVLENIIP 170
E E ++ + + T F L+ LP P ++ + L+
Sbjct: 170 AQETSIITRLFEGQLSYSITCLKCESCTHKNEVFTILS--LPIPSDYECSLQDCLQCFFQ 227
Query: 171 QVNLYTILTKFNNESEKEYKTYKENFLKRFEITSLPPYLILYVKRFTKNTFFVEKNPTIV 230
Q L ++N+ + K+ R I+ +P ++ + KRF K T +
Sbjct: 228 QDTL-----TWSNQIYCSFCEIKQEAAVRTTISKVPKIIVFHFKRFDIQGTVKRKLRTDI 282
Query: 231 NFPVKNVDFGDILTPEVKAKYESTMYDLVKAKYESTMYDLVANIVHDGEPSNGTYRVHLY 290
++P+ N+D + P + + MY+L A + H G+ G Y
Sbjct: 283 HYPLTNLDLTPYICPVFR---------------KHPMYNLCAVVNHFGDLDGGHYTAFCK 327
Query: 291 HKGIGKWYEIQDLHVTDILPQMITLTEAYIQIYELR 326
+ WY D V++I + AY+ Y +
Sbjct: 328 NSVTQAWYSFDDTRVSEIPDTSVQTATAYLLFYSCQ 363
>sp|P35123|UBP4_MOUSE Ubiquitin carboxyl-terminal hydrolase 4 OS=Mus musculus GN=Usp4
PE=1 SV=3
Length = 962
Score = 62.0 bits (149), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 64/140 (45%), Gaps = 15/140 (10%)
Query: 198 KRFEITSLPPYLILYVKRFTKNTFFVEKNPTIVNFPVKNVDFGDILTPEVKAKYESTMYD 257
K+F++ SLP L++++KRF+ N ++ +K T+V FPV+ ++ + + Y
Sbjct: 809 KKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPVRALNMSEFVCDRSARPY------ 862
Query: 258 LVKAKYESTMYDLVANIVHDGEPSNGTYRVHLYHKGIGKWYEIQDLHVTDILPQMITLTE 317
+YDL+A H G G Y + ++ GKWY D V+ I
Sbjct: 863 ---------VYDLIAVSNHYGAMGVGHYTAYAKNRLNGKWYYFDDSSVSLASEDQIVTKA 913
Query: 318 AYIQIYELRTTPSPTAMSEG 337
AY+ Y+ R + S G
Sbjct: 914 AYVLFYQRRDDECSSTSSLG 933
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 82/178 (46%), Gaps = 18/178 (10%)
Query: 1 ALCHVTPLRDYFLREINYARVKRP-PGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEML 59
L + PL +YFL++ A + R P + + + EL++++W+ R+ +HV+P M
Sbjct: 319 CLSNTAPLTEYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRD--THVAPR-MF 375
Query: 60 QAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKK-----------DSSIVYKTF 108
+ V QF +Q D + L++ L+ LH LN KKK ++V K
Sbjct: 376 KTQVGRFAPQFSGYQQQDSQELLAFILDGLHEDLNRVKKKPYLEPKDANGRPDAVVAKEA 435
Query: 109 LGSMKVKTRKIPPVELEEKVRQRLLLTEEYKETETESPFLYLTCDLPPPPLFKDEVLE 166
+ +++ + + L+ E K + T PF YLT P PL KD ++E
Sbjct: 436 WENHRLRNDSVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLTL---PLPLKKDRIME 490
>sp|O57429|UBP2_CHICK Ubiquitin carboxyl-terminal hydrolase 2 OS=Gallus gallus GN=USP2
PE=2 SV=1
Length = 357
Score = 62.0 bits (149), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 79/358 (22%), Positives = 135/358 (37%), Gaps = 66/358 (18%)
Query: 1 ALCHVTPLRDY-----FLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSP 55
L + LRDY +LR++N R L+ F +L++ LW S VSP
Sbjct: 36 CLSNTKELRDYCLQNQYLRDLNNNSRMRTA------LMSEFAKLIQLLWTSSPNDS-VSP 88
Query: 56 HEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDSSIVYKTFLGSMKVK 115
E + ++ + + +Q D +FL + L+ LH +N L +
Sbjct: 89 SEFKTQIQRYAPRFVGYNQQ-DAQEFLRFLLDGLHGEVN------------RVLVRPRAN 135
Query: 116 TRKIPPVELEEKVRQRLLLTEEYKETETESPFL-----YLTCD----------------L 154
+ + +EK RQ +E +++ F+ LTC L
Sbjct: 136 ADTLDHLPDDEKSRQMWRRYQEREDSRVSDLFVGQLKSSLTCSECGYCSTAFDPFWDLSL 195
Query: 155 PPPPLFKDEVLENIIPQVNLYTILTKFNNESEKEYKTYKEN--FLKRFEITSLPPYLILY 212
P P EV ++ + L+T + + + K K+F I P L+L+
Sbjct: 196 PIPKKGYGEV--TLMDCLRLFTKEDVLDGDEKPTCCRCKARTRCTKKFSIQKFPKILVLH 253
Query: 213 VKRFTKNTFFVEKNPTIVNFPVKNVDFGDILTPEVKAKYESTMYDLVKAKYESTMYDLVA 272
+KRF++ K T VNFP+K++D + + +Y+L A
Sbjct: 254 LKRFSEARIRASKLTTFVNFPLKDLD----------------LREFASQSCNHAVYNLYA 297
Query: 273 NIVHDGEPSNGTYRVHLYHKGIGKWYEIQDLHVTDILPQMITLTEAYIQIYELRTTPS 330
H G G Y + +W+ D VT + + ++AY+ YEL + S
Sbjct: 298 VSNHSGTTMGGHYTAYCKSPISSEWHSFNDSRVTPMSSSHVRSSDAYLLFYELASPSS 355
>sp|Q8C6M1|UBP20_MOUSE Ubiquitin carboxyl-terminal hydrolase 20 OS=Mus musculus GN=Usp20
PE=1 SV=1
Length = 916
Score = 61.6 bits (148), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 61/129 (47%), Gaps = 14/129 (10%)
Query: 195 NFLKRFEITSLPPYLILYVKRFTKNTFFVEKNPTIVNFPVKNVDFGDILTPEVKAKYEST 254
N +K ++ LP L +++KRF + K + V+FP++ +D L E ++
Sbjct: 570 NGVKYCKVLCLPEILCVHLKRFRHEVMYSFKVSSHVSFPLEGLDLRPFLAKECTSQV--- 626
Query: 255 MYDLVKAKYESTMYDLVANIVHDGEPSNGTYRVHLYHKGIGKWYEIQDLHVTDILPQMIT 314
T YDL++ I H G +G Y + + G+WYE D +VT++ ++
Sbjct: 627 -----------TTYDLLSVICHHGTAGSGHYIAYCQNVINGQWYEFDDQYVTEVHETVVQ 675
Query: 315 LTEAYIQIY 323
EAY+ Y
Sbjct: 676 NVEAYVLFY 684
>sp|A0JM59|UBP20_XENTR Ubiquitin carboxyl-terminal hydrolase 20 OS=Xenopus tropicalis
GN=usp20 PE=2 SV=1
Length = 884
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 62/129 (48%), Gaps = 14/129 (10%)
Query: 195 NFLKRFEITSLPPYLILYVKRFTKNTFFVEKNPTIVNFPVKNVDFGDILTPEVKAKYEST 254
N +K ++ LP L +++KRF + K + V+FP++ ++ L E ++
Sbjct: 538 NGVKYCKVLRLPEILCIHLKRFRHEVMYSFKIGSHVSFPLEGLNLRPFLAKECVSRI--- 594
Query: 255 MYDLVKAKYESTMYDLVANIVHDGEPSNGTYRVHLYHKGIGKWYEIQDLHVTDILPQMIT 314
T YDL+A I H G S+G Y + + G+WYE D +VT++ ++
Sbjct: 595 -----------TTYDLLAVICHHGSASSGHYISYCQNVINGQWYEFDDQYVTEVHETVVQ 643
Query: 315 LTEAYIQIY 323
EAY+ Y
Sbjct: 644 NAEAYVLFY 652
>sp|Q99K46|UBP11_MOUSE Ubiquitin carboxyl-terminal hydrolase 11 OS=Mus musculus GN=Usp11
PE=2 SV=4
Length = 921
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 78/155 (50%), Gaps = 13/155 (8%)
Query: 172 VNLYTILTKFNNESEKEYKTYKENFL--KRFEITSLPPYLILYVKRFTKNTFFVEKNPTI 229
+ L+T + E+ + K++ L K+ ++ LP LI+++KRF+ + EK T+
Sbjct: 744 IKLFTTVETLEKENPWYCSSCKQHQLATKKLDLWMLPEVLIIHLKRFSFSKISREKLDTL 803
Query: 230 VNFPVKNVDFGDILTPEVKAKYESTMYDLVKAKYESTMYDLVANIVHDGEPSNGTYRVHL 289
V FP++++DF + + +K K ES+ DL K YDL+A H G +G Y
Sbjct: 804 VQFPIRDLDFSEFV---IKPKNESSP-DLYK-------YDLIAVSNHYGGMRDGHYTTFA 852
Query: 290 YHKGIGKWYEIQDLHVTDILPQMITLTEAYIQIYE 324
+K G+W+ D V+ + I AY+ Y+
Sbjct: 853 CNKDSGQWHYFDDNSVSPVNENQIESKAAYVLFYQ 887
Score = 34.3 bits (77), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 12/105 (11%)
Query: 1 ALCHVTPLRDYFL-----REINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSP 55
L +V L +YFL E+N+ R P L + + +L+++ W+ + + P
Sbjct: 274 CLSNVPQLTEYFLNNRYLEELNF----RNPLGMKGELAEAYADLVKQTWS--GYHRSIVP 327
Query: 56 HEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKD 100
+ V ++ QF +Q D + LS+ L+ LH LN KKK+
Sbjct: 328 NVFKNKVGHFA-SQFLGYQQHDSQELLSFLLDGLHEDLNRVKKKE 371
>sp|B1WBD7|UBP20_XENLA Ubiquitin carboxyl-terminal hydrolase 20 OS=Xenopus laevis GN=usp20
PE=2 SV=1
Length = 840
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 62/129 (48%), Gaps = 14/129 (10%)
Query: 195 NFLKRFEITSLPPYLILYVKRFTKNTFFVEKNPTIVNFPVKNVDFGDILTPEVKAKYEST 254
N +K ++ LP L +++KRF + K + V+FP++ ++ L E ++
Sbjct: 494 NGVKYCKVLRLPEVLCIHLKRFRHEVMYSFKIGSHVSFPLEGLNLRPFLAKECVSRI--- 550
Query: 255 MYDLVKAKYESTMYDLVANIVHDGEPSNGTYRVHLYHKGIGKWYEIQDLHVTDILPQMIT 314
T YDL+A I H G S+G Y + + G+WYE D +VT++ ++
Sbjct: 551 -----------TTYDLLAVICHHGSASSGHYISYCQNVINGQWYEFDDQYVTEVHETVVQ 599
Query: 315 LTEAYIQIY 323
EAY+ Y
Sbjct: 600 NAEAYVLFY 608
>sp|A7Z056|UBP20_BOVIN Ubiquitin carboxyl-terminal hydrolase 20 OS=Bos taurus GN=USP20
PE=2 SV=1
Length = 912
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 61/129 (47%), Gaps = 14/129 (10%)
Query: 195 NFLKRFEITSLPPYLILYVKRFTKNTFFVEKNPTIVNFPVKNVDFGDILTPEVKAKYEST 254
N +K ++ LP L +++KRF + K + V+FP++ +D L E ++
Sbjct: 566 NGVKYCKVLRLPEILCIHLKRFRHEVMYSFKISSHVSFPLEGLDLRPFLAKECTSQI--- 622
Query: 255 MYDLVKAKYESTMYDLVANIVHDGEPSNGTYRVHLYHKGIGKWYEIQDLHVTDILPQMIT 314
T YDL++ I H G +G Y + + G+WYE D +VT++ ++
Sbjct: 623 -----------TTYDLLSVICHHGTAGSGHYIAYCQNVINGQWYEFDDQYVTEVHETVVQ 671
Query: 315 LTEAYIQIY 323
EAY+ Y
Sbjct: 672 NAEAYVLFY 680
>sp|Q13107|UBP4_HUMAN Ubiquitin carboxyl-terminal hydrolase 4 OS=Homo sapiens GN=USP4
PE=1 SV=3
Length = 963
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 64/129 (49%), Gaps = 15/129 (11%)
Query: 198 KRFEITSLPPYLILYVKRFTKNTFFVEKNPTIVNFPVKNVDFGDILTPEVKAKYESTMYD 257
K+F++ SLP L++++KRF+ N ++ +K T+V FP++ ++ + + +
Sbjct: 810 KKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPIRGLNMSEFVC------------N 857
Query: 258 LVKAKYESTMYDLVANIVHDGEPSNGTYRVHLYHKGIGKWYEIQDLHVTDILPQMITLTE 317
L Y +YDL+A H G G Y + +K GKWY D +V+ I
Sbjct: 858 LSARPY---VYDLIAVSNHYGAMGVGHYTAYAKNKLNGKWYYFDDSNVSLASEDQIVTKA 914
Query: 318 AYIQIYELR 326
AY+ Y+ R
Sbjct: 915 AYVLFYQRR 923
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 82/178 (46%), Gaps = 18/178 (10%)
Query: 1 ALCHVTPLRDYFLREINYARVKRP-PGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEML 59
L + PL DYFL++ A + R P + + + EL++++W+ R+ +HV+P M
Sbjct: 319 CLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRD--AHVAPR-MF 375
Query: 60 QAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKK-----------DSSIVYKTF 108
+ V QF +Q D + L++ L+ LH LN KKK ++V K
Sbjct: 376 KTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAKEA 435
Query: 109 LGSMKVKTRKIPPVELEEKVRQRLLLTEEYKETETESPFLYLTCDLPPPPLFKDEVLE 166
+ +++ + + L+ E K + T PF YLT P PL KD V+E
Sbjct: 436 WENHRLRNDSVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLTL---PLPLKKDRVME 490
>sp|A5PMR2|UBP33_DANRE Ubiquitin carboxyl-terminal hydrolase 33 OS=Danio rerio GN=usp33
PE=2 SV=1
Length = 897
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 63/130 (48%), Gaps = 14/130 (10%)
Query: 195 NFLKRFEITSLPPYLILYVKRFTKNTFFVEKNPTIVNFPVKNVDFGDILTPEVKAKYEST 254
N +K ++ SLP L +++KRF F K T V+FP++ ++ L AK S
Sbjct: 553 NGVKFCKVQSLPEILCIHLKRFRHELMFSTKIGTHVSFPLEGLEMQPFL-----AKDSSA 607
Query: 255 MYDLVKAKYESTMYDLVANIVHDGEPSNGTYRVHLYHKGIGKWYEIQDLHVTDILPQMIT 314
+ +T YDL++ I H G S+G Y + ++ WYE D VT++ +
Sbjct: 608 L---------TTTYDLLSVICHHGTASSGHYIAYCRNELNQLWYEFDDQSVTEVSESCVQ 658
Query: 315 LTEAYIQIYE 324
EAY+ Y+
Sbjct: 659 NAEAYVLFYK 668
>sp|Q9Y2K6|UBP20_HUMAN Ubiquitin carboxyl-terminal hydrolase 20 OS=Homo sapiens GN=USP20
PE=1 SV=2
Length = 914
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 60/129 (46%), Gaps = 14/129 (10%)
Query: 195 NFLKRFEITSLPPYLILYVKRFTKNTFFVEKNPTIVNFPVKNVDFGDILTPEVKAKYEST 254
N +K ++ LP L +++KRF + K + V+FP++ +D L E ++
Sbjct: 568 NGVKYCKVLRLPEILCIHLKRFRHEVMYSFKINSHVSFPLEGLDLRPFLAKECTSQI--- 624
Query: 255 MYDLVKAKYESTMYDLVANIVHDGEPSNGTYRVHLYHKGIGKWYEIQDLHVTDILPQMIT 314
T YDL++ I H G +G Y + + G+WYE D +VT++ ++
Sbjct: 625 -----------TTYDLLSVICHHGTAGSGHYIAYCQNVINGQWYEFDDQYVTEVHETVVQ 673
Query: 315 LTEAYIQIY 323
E Y+ Y
Sbjct: 674 NAEGYVLFY 682
>sp|Q5RCD3|UBP4_PONAB Ubiquitin carboxyl-terminal hydrolase 4 OS=Pongo abelii GN=USP4
PE=2 SV=1
Length = 963
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 84/178 (47%), Gaps = 18/178 (10%)
Query: 1 ALCHVTPLRDYFLREINYARVKRP-PGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEML 59
L + PL DYFL++ A + R P + + + EL++++W+ R+ +HV+P M
Sbjct: 319 CLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRD--AHVAPR-MF 375
Query: 60 QAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKK------KDSS-----IVYKTF 108
+ V QF +Q D + L++ L+ LH LN KK KD++ +V K
Sbjct: 376 KTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDVVVAKEA 435
Query: 109 LGSMKVKTRKIPPVELEEKVRQRLLLTEEYKETETESPFLYLTCDLPPPPLFKDEVLE 166
+ +++ + + L+ E K + T PF YLT P PL KD V+E
Sbjct: 436 WENHRLRNDSVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLTL---PLPLKKDRVME 490
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 61/129 (47%), Gaps = 15/129 (11%)
Query: 198 KRFEITSLPPYLILYVKRFTKNTFFVEKNPTIVNFPVKNVDFGDILTPEVKAKYESTMYD 257
K+ ++ SLP L++++KRF+ N ++ +K T+V FP++ ++ + + Y
Sbjct: 810 KKSDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPIRGLNMSEFVCNLSARPY------ 863
Query: 258 LVKAKYESTMYDLVANIVHDGEPSNGTYRVHLYHKGIGKWYEIQDLHVTDILPQMITLTE 317
+YDL+A H G G Y + +K GKWY D +V+ I
Sbjct: 864 ---------VYDLIAVSNHYGAMGVGHYTAYAKNKLNGKWYYFDDSNVSLASEDQIVTKA 914
Query: 318 AYIQIYELR 326
AY+ Y+ R
Sbjct: 915 AYVLFYQRR 923
>sp|Q5R5Z6|UBP20_PONAB Ubiquitin carboxyl-terminal hydrolase 20 OS=Pongo abelii GN=USP20
PE=2 SV=1
Length = 913
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 60/129 (46%), Gaps = 14/129 (10%)
Query: 195 NFLKRFEITSLPPYLILYVKRFTKNTFFVEKNPTIVNFPVKNVDFGDILTPEVKAKYEST 254
N +K ++ LP L +++KRF + K + V+FP++ +D L E ++
Sbjct: 567 NGVKYCKVLRLPEILCIHLKRFRHEVMYSFKINSHVSFPLEGLDLRPFLAKECTSQI--- 623
Query: 255 MYDLVKAKYESTMYDLVANIVHDGEPSNGTYRVHLYHKGIGKWYEIQDLHVTDILPQMIT 314
T YDL++ I H G +G Y + + G+WYE D +VT++ ++
Sbjct: 624 -----------TTYDLLSVICHHGTAGSGHYIAYCQNVINGQWYEFDDQYVTEVHETVVQ 672
Query: 315 LTEAYIQIY 323
E Y+ Y
Sbjct: 673 NAEGYVLFY 681
>sp|A5PN09|UBP20_DANRE Ubiquitin carboxyl-terminal hydrolase 20 OS=Danio rerio GN=usp20
PE=2 SV=1
Length = 911
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 61/129 (47%), Gaps = 14/129 (10%)
Query: 195 NFLKRFEITSLPPYLILYVKRFTKNTFFVEKNPTIVNFPVKNVDFGDILTPEVKAKYEST 254
N +K ++ LP L +++KRF + K + V+FP++ +D L E ++
Sbjct: 568 NGVKYCKVLRLPEILCIHLKRFRHEVMYSFKINSHVSFPLEGLDLKPFLAKESPSQI--- 624
Query: 255 MYDLVKAKYESTMYDLVANIVHDGEPSNGTYRVHLYHKGIGKWYEIQDLHVTDILPQMIT 314
T YDL++ I H G +G Y + + G+WYE D +VT++ ++
Sbjct: 625 -----------TTYDLLSVICHHGTAGSGHYIAYCQNVINGQWYEFDDQYVTEVHETVVQ 673
Query: 315 LTEAYIQIY 323
EAY+ Y
Sbjct: 674 NAEAYVLFY 682
>sp|P51784|UBP11_HUMAN Ubiquitin carboxyl-terminal hydrolase 11 OS=Homo sapiens GN=USP11
PE=1 SV=3
Length = 963
Score = 58.5 bits (140), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 81/171 (47%), Gaps = 19/171 (11%)
Query: 172 VNLYTILTKFNNESEKEYKTYKENFL--KRFEITSLPPYLILYVKRFTKNTFFVEKNPTI 229
+ L+T + E+ + K++ L K+ ++ LP LI+++KRF+ F EK T+
Sbjct: 785 IELFTTVETLEKENPWYCPSCKQHQLATKKLDLWMLPEILIIHLKRFSYTKFSREKLDTL 844
Query: 230 VNFPVKNVDFGD-ILTPEVKAKYESTMYDLVKAKYESTMYDLVANIVHDGEPSNGTYRVH 288
V FP++++DF + ++ P+ ++ E YDL+ V+N H G +G Y
Sbjct: 845 VEFPIRDLDFSEFVIQPQNESNPELYKYDLIA----------VSN--HYGGMRDGHYTTF 892
Query: 289 LYHKGIGKWYEIQDLHVTDILPQMITLTEAYIQIYE----LRTTPSPTAMS 335
+K G+W+ D V+ + I AY+ Y+ R SP S
Sbjct: 893 ACNKDSGQWHYFDDNSVSPVNENQIESKAAYVLFYQRQDVARRLLSPAGSS 943
Score = 35.0 bits (79), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 7/93 (7%)
Query: 8 LRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEMLQAVVLWSR 67
L + +L E+N+ R P + + + +L+++ W+ + PH V ++
Sbjct: 338 LNNCYLEELNF----RNPLGMKGEIAEAYADLVKQAWS--GHHRSIVPHVFKNKVGHFA- 390
Query: 68 KQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKD 100
QF +Q D + LS+ L+ LH LN KKK+
Sbjct: 391 SQFLGYQQHDSQELLSFLLDGLHEDLNRVKKKE 423
>sp|Q9C585|UBP8_ARATH Ubiquitin carboxyl-terminal hydrolase 8 OS=Arabidopsis thaliana
GN=UBP8 PE=1 SV=2
Length = 871
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 61/128 (47%), Gaps = 15/128 (11%)
Query: 197 LKRFEITSLPPYLILYVKRFTKNTFFVEKNPTIVNFPVKNVDFGDILTPEVKAKYESTMY 256
+K+ ++ LP L++++KRF+ + F K V+FP+ N+D L+ + K T Y
Sbjct: 755 IKKLDLWRLPEILVIHLKRFSYSRFMKNKLEAYVDFPLDNLD----LSSYISYKNGQTTY 810
Query: 257 DLVKAKYESTMYDLVANIVHDGEPSNGTYRVHLYHKGIGKWYEIQDLHVTDILPQMITLT 316
Y L A H G G Y +++H G +WY+ D HV I + I +
Sbjct: 811 ----------RYMLYAISNHYGSMGGGHYTAYVHHGG-DRWYDFDDSHVHQISQEKIKTS 859
Query: 317 EAYIQIYE 324
AY+ Y+
Sbjct: 860 AAYVLFYK 867
Score = 41.2 bits (95), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 48/103 (46%), Gaps = 11/103 (10%)
Query: 1 ALCHVTPLRDYFL----REINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPH 56
L H L D+FL +EIN + P G + + FG+L+R LW P S V+P
Sbjct: 296 CLAHTPKLVDFFLGEYSKEIN---LDNPLGMKGEIALA-FGDLLRSLWAPG--ASTVAPR 349
Query: 57 EMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKK 99
+A + QF Q D + L++ L+ LH LN K K
Sbjct: 350 -TFKAKLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKNK 391
>sp|Q8TEY7|UBP33_HUMAN Ubiquitin carboxyl-terminal hydrolase 33 OS=Homo sapiens GN=USP33
PE=1 SV=2
Length = 942
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 57/129 (44%), Gaps = 14/129 (10%)
Query: 195 NFLKRFEITSLPPYLILYVKRFTKNTFFVEKNPTIVNFPVKNVDFGDILTPEVKAKYEST 254
N +K ++ + P L +++KRF F K T V+FP++ +D L + A+
Sbjct: 598 NGVKFCKVQNFPEILCIHLKRFRHELMFSTKISTHVSFPLEGLDLQPFLAKDSPAQI--- 654
Query: 255 MYDLVKAKYESTMYDLVANIVHDGEPSNGTYRVHLYHKGIGKWYEIQDLHVTDILPQMIT 314
YDL++ I H G S+G Y + + WYE D VT++ +
Sbjct: 655 -----------VTYDLLSVICHHGTASSGHYIAYCRNNLNNLWYEFDDQSVTEVSESTVQ 703
Query: 315 LTEAYIQIY 323
EAY+ Y
Sbjct: 704 NAEAYVLFY 712
>sp|Q8R5K2|UBP33_MOUSE Ubiquitin carboxyl-terminal hydrolase 33 OS=Mus musculus GN=Usp33
PE=1 SV=2
Length = 909
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 14/129 (10%)
Query: 195 NFLKRFEITSLPPYLILYVKRFTKNTFFVEKNPTIVNFPVKNVDFGDILTPEVKAKYEST 254
N +K ++ P L +++KRF F K T V+FP++ +D L + A+
Sbjct: 565 NGVKFCKVQKFPEILCIHLKRFRHELMFSTKISTHVSFPLEGLDLQPFLAKDSPAQI--- 621
Query: 255 MYDLVKAKYESTMYDLVANIVHDGEPSNGTYRVHLYHKGIGKWYEIQDLHVTDILPQMIT 314
YDL++ I H G S+G Y + + WYE D VT++ +
Sbjct: 622 -----------VTYDLLSVICHHGTASSGHYIAYCRNNLNNLWYEFDDQSVTEVSESTVQ 670
Query: 315 LTEAYIQIY 323
EAY+ Y
Sbjct: 671 NAEAYVLFY 679
>sp|P40818|UBP8_HUMAN Ubiquitin carboxyl-terminal hydrolase 8 OS=Homo sapiens GN=USP8 PE=1
SV=1
Length = 1118
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 81/343 (23%), Positives = 143/343 (41%), Gaps = 50/343 (14%)
Query: 1 ALCHVTPLRDYFLR-----EINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSP 55
LC+ L DYF R +IN + + G+ + + FG +M+ LW + ++SP
Sbjct: 794 CLCNAPHLADYFNRNCYQDDINRSNLLGHKGE----VAEEFGIIMKALWTGQY--RYISP 847
Query: 56 HEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDSSIVYK----TFLGS 111
+ + + QF Q D + L + ++ LH LN K D+ YK L
Sbjct: 848 KD-FKITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLN---KADNRKRYKEENNDHLDD 903
Query: 112 MKVK----------TRKIPPVELEEKVRQRLLLTEEYKETETESPFLYLTCDLPPPPLFK 161
K I + + + + +K++ T F+YL+ LP K
Sbjct: 904 FKAAEHAWQKHKQLNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFMYLS--LPLASTSK 961
Query: 162 DEVLENIIPQVNLYTILTKFNNESEKEYKTYKENFLKRFEITSLPPYLILYVKRFTKNTF 221
L++ + + LT NN + + + LK+ EI LPP L++++KRF+ +
Sbjct: 962 C-TLQDCLRLFSKEEKLTD-NNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGR 1019
Query: 222 FVEKNPTIVNFPVKNVDFGD-ILTPEVKAKYESTMYDLVKAKYESTMYDLVANIVHDGEP 280
+ +K T V+FP++N+D ++ P+ K Y+L + H G
Sbjct: 1020 WKQKLQTSVDFPLENLDLSQYVIGPKNNLK----------------KYNLFSVSNHYGGL 1063
Query: 281 SNGTYRVHLYHKGIGKWYEIQDLHVTDILPQMITLTEAYIQIY 323
G Y + + +W++ D V+DI + + AYI Y
Sbjct: 1064 DGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVKSSAAYILFY 1106
>sp|Q80U87|UBP8_MOUSE Ubiquitin carboxyl-terminal hydrolase 8 OS=Mus musculus GN=Usp8 PE=1
SV=2
Length = 1080
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 81/356 (22%), Positives = 143/356 (40%), Gaps = 76/356 (21%)
Query: 1 ALCHVTPLRDYFLR-----EINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSP 55
LC+ L DYF R +IN + + G+ + + FG +M+ LW + ++SP
Sbjct: 756 CLCNAPHLADYFNRNCYQDDINRSNLLGHKGE----VAEEFGIIMKALWTGQY--RYISP 809
Query: 56 HEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGT------------------- 96
+ + + QF + Q D + L + ++ LH LN
Sbjct: 810 KD-FKVTIGKINDQFAGSSQQDSQELLLFLMDGLHEDLNKADNRKRHKEENNEHLDDLQA 868
Query: 97 --------KKKDSSIVYKTFLGSMKVKTRKIPPVELEEKVRQRLLLTEEYKETETESPFL 148
K+ + SI+ F G K + + R+R + T F+
Sbjct: 869 AEHAWQKHKQLNESIIVALFQGQFKSTVQCL-------TCRRR---------SRTFEAFM 912
Query: 149 YLTCDLPPPPLFKDEVLENIIPQVNLYTILTKFNNESEKEYKTYKENFLKRFEITSLPPY 208
YL+ LP K L++ + + LT NN + + + LK+ EI LPP
Sbjct: 913 YLS--LPLASTSKC-TLQDCLRLFSKEEKLTD-NNRFYCSHCRARRDSLKKIEIWKLPPV 968
Query: 209 LILYVKRFTKNTFFVEKNPTIVNFPVKNVDFGD-ILTPEVKAKYESTMYDLVKAKYESTM 267
L++++KRF+ + + +K T V+FP++N+D ++ P+ K
Sbjct: 969 LLVHLKRFSYDGRWKQKLQTSVDFPLENLDLSQYVIGPKNSLK----------------K 1012
Query: 268 YDLVANIVHDGEPSNGTYRVHLYHKGIGKWYEIQDLHVTDILPQMITLTEAYIQIY 323
Y+L + H G G Y + + +W++ D V+DI + + AYI Y
Sbjct: 1013 YNLFSVSNHYGGLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVRSSAAYILFY 1068
>sp|Q5REG5|UBP33_PONAB Ubiquitin carboxyl-terminal hydrolase 33 OS=Pongo abelii GN=USP33
PE=2 SV=1
Length = 914
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 14/129 (10%)
Query: 195 NFLKRFEITSLPPYLILYVKRFTKNTFFVEKNPTIVNFPVKNVDFGDILTPEVKAKYEST 254
N +K ++ P L +++KRF F K T V+FP++ +D L + A+
Sbjct: 566 NGVKFCKVQKFPEILCIHLKRFRHELMFSTKISTHVSFPLEGLDLQPFLAKDSPAQI--- 622
Query: 255 MYDLVKAKYESTMYDLVANIVHDGEPSNGTYRVHLYHKGIGKWYEIQDLHVTDILPQMIT 314
YDL++ I H G S+G Y + + WYE D VT++ +
Sbjct: 623 -----------VTYDLLSVICHHGTASSGHYIAYCRNNLNNLWYEFDDQSVTEVSESTVQ 671
Query: 315 LTEAYIQIY 323
EAY+ Y
Sbjct: 672 NAEAYVLFY 680
>sp|Q4R6D3|UBP50_MACFA Putative ubiquitin carboxyl-terminal hydrolase 50 OS=Macaca
fascicularis GN=USP50 PE=2 SV=1
Length = 373
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 77/336 (22%), Positives = 127/336 (37%), Gaps = 42/336 (12%)
Query: 1 ALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEMLQ 60
LC ++PL +YFL ++ + + F LM +W + VSP E+ +
Sbjct: 61 CLCSISPLVEYFLSGKYITALQNDCSE----VATAFAYLMTDMWLGDS--DCVSP-EIFR 113
Query: 61 AVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDSSIVYKTFLGSMKVKTRKIP 120
+ + F Q D +FL + LN LH AL KK GS + RK
Sbjct: 114 SALGNLYPAFTKKTQQDAQEFLIYVLNELHEAL---KKYHYPRRRSHEKGSAQRCCRKWI 170
Query: 121 PVE-------LEEKVRQRLLLTEEYKETETESPFLYLTCDLPPPPLFK---DEVLENIIP 170
E E ++ ++ + K T F L+ LP P ++ + L+
Sbjct: 171 TTETSVITQLFEGQLNYSIVCLKCEKCTYKNEVFTVLS--LPIPSEYECSLQDCLQCFFQ 228
Query: 171 QVNLYTILTKFNNESEKEYKTYKENFLKRFEITSLPPYLILYVKRFTKNTFFVEKNPTIV 230
Q L +NN+ + K+ R I+ P +I ++KRF K T +
Sbjct: 229 QDTL-----TWNNQIHCSFCETKQETAVRAGISKAPKIIIFHLKRFDIQGTTKRKLRTDI 283
Query: 231 NFPVKNVDFGDILTPEVKAKYESTMYDLVKAKYESTMYDLVANIVHDGEPSNGTYRVHLY 290
++P+ N+D + P + KY Y+L A + H G+ G Y
Sbjct: 284 HYPLTNLDLTPYICPIFR-------------KYPK--YNLCAVVNHFGDLDGGHYTAFCK 328
Query: 291 HKGIGKWYEIQDLHVTDILPQMITLTEAYIQIYELR 326
+ WY D V++I + AY+ Y +
Sbjct: 329 NSFTQAWYSFDDTRVSEIPDTSVQNATAYLLFYSCQ 364
>sp|Q9R085|UBP15_RAT Ubiquitin carboxyl-terminal hydrolase 15 OS=Rattus norvegicus
GN=Usp15 PE=1 SV=1
Length = 952
Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 15/136 (11%)
Query: 198 KRFEITSLPPYLILYVKRFTKNTFFVEKNPTIVNFPVKNVDFGDILTPEVKAKYESTMYD 257
K+ ++ SLPP L++++KRF+ + + +K T+V+FP+ ++D +
Sbjct: 791 KKLDLWSLPPVLVVHLKRFSYSRYMRDKLDTLVDFPISDLDMSEF--------------- 835
Query: 258 LVKAKYESTMYDLVANIVHDGEPSNGTYRVHLYHKGIGKWYEIQDLHVTDILPQMITLTE 317
L+ Y+L+A H G G Y +K GKWY D V+ I
Sbjct: 836 LINPNAGPCRYNLIAVSNHYGGMGGGHYTAFAKNKDDGKWYYFDDSSVSSASEDQIVSKA 895
Query: 318 AYIQIYELRTTPSPTA 333
AY+ Y+ + T S T
Sbjct: 896 AYVLFYQRQDTFSGTG 911
Score = 38.5 bits (88), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 74/172 (43%), Gaps = 25/172 (14%)
Query: 1 ALCHVTPLRDYFLR-----EINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSP 55
L + PL +YFL E+N+ G+ + + + EL++++W+ + S+V+P
Sbjct: 277 CLSNTPPLTEYFLNDKYQEELNFDNPLGMRGE----IAKSYAELIKQMWSGK--FSYVTP 330
Query: 56 HEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKK------------DSSI 103
V ++ QF +Q D + L++ L+ LH LN +KK D +
Sbjct: 331 RAFKTQVGRFA-PQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIQLKDADGRPDKVV 389
Query: 104 VYKTFLGSMKVKTRKIPPVELEEKVRQRLLLTEEYKETETESPFLYLTCDLP 155
+ + +K I + + L+ E K + T PF YLT LP
Sbjct: 390 AEEAWENHLKRNDSIIVDI-FHGLFKSTLVCPECAKISVTFDPFCYLTLPLP 440
>sp|Q28CN3|UBP33_XENTR Ubiquitin carboxyl-terminal hydrolase 33 OS=Xenopus tropicalis
GN=usp33 PE=2 SV=1
Length = 892
Score = 55.5 bits (132), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 56/129 (43%), Gaps = 14/129 (10%)
Query: 195 NFLKRFEITSLPPYLILYVKRFTKNTFFVEKNPTIVNFPVKNVDFGDILTPEVKAKYEST 254
N +K ++ P L +++KRF F K T V+FP++ +D L + ++
Sbjct: 548 NGVKFCKVQKFPEILCIHLKRFRHELMFSTKIGTHVSFPLEGLDLQPFLAKDSPSQI--- 604
Query: 255 MYDLVKAKYESTMYDLVANIVHDGEPSNGTYRVHLYHKGIGKWYEIQDLHVTDILPQMIT 314
YDL++ I H G S+G Y + + WYE D VT++ +
Sbjct: 605 -----------VTYDLLSVICHHGTASSGHYIAYCRNNLNNLWYEFDDQSVTEVSEATVQ 653
Query: 315 LTEAYIQIY 323
EAY+ Y
Sbjct: 654 NAEAYVLFY 662
>sp|Q8R5H1|UBP15_MOUSE Ubiquitin carboxyl-terminal hydrolase 15 OS=Mus musculus GN=Usp15
PE=2 SV=1
Length = 981
Score = 55.5 bits (132), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 15/136 (11%)
Query: 198 KRFEITSLPPYLILYVKRFTKNTFFVEKNPTIVNFPVKNVDFGDILTPEVKAKYESTMYD 257
K+ ++ SLPP L++++KRF+ + + +K T+V+FP+ ++D +
Sbjct: 820 KKLDLWSLPPVLVVHLKRFSYSRYMRDKLDTLVDFPISDLDMSEF--------------- 864
Query: 258 LVKAKYESTMYDLVANIVHDGEPSNGTYRVHLYHKGIGKWYEIQDLHVTDILPQMITLTE 317
L+ Y+L+A H G G Y +K GKWY D V+ I
Sbjct: 865 LINPNAGPCRYNLIAVSNHYGGMGGGHYTAFAKNKDDGKWYYFDDSSVSTASEDQIVSKA 924
Query: 318 AYIQIYELRTTPSPTA 333
AY+ Y+ + T S T
Sbjct: 925 AYVLFYQRQDTFSGTG 940
Score = 38.5 bits (88), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 74/172 (43%), Gaps = 25/172 (14%)
Query: 1 ALCHVTPLRDYFLR-----EINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSP 55
L + PL +YFL E+N+ G+ + + + EL++++W+ + S+V+P
Sbjct: 306 CLSNTPPLTEYFLNDKYQEELNFDNPLGMRGE----IAKSYAELIKQMWSGK--FSYVTP 359
Query: 56 HEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKK------------DSSI 103
V ++ QF +Q D + L++ L+ LH LN +KK D +
Sbjct: 360 RAFKTQVGRFA-PQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIQLKDADGRPDKVV 418
Query: 104 VYKTFLGSMKVKTRKIPPVELEEKVRQRLLLTEEYKETETESPFLYLTCDLP 155
+ + +K I + + L+ E K + T PF YLT LP
Sbjct: 419 AEEAWENHLKRNDSIIVDI-FHGLFKSTLVCPECAKISVTFDPFCYLTLPLP 469
>sp|Q9Y4E8|UBP15_HUMAN Ubiquitin carboxyl-terminal hydrolase 15 OS=Homo sapiens GN=USP15
PE=1 SV=3
Length = 981
Score = 55.5 bits (132), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 15/136 (11%)
Query: 198 KRFEITSLPPYLILYVKRFTKNTFFVEKNPTIVNFPVKNVDFGDILTPEVKAKYESTMYD 257
K+ ++ SLPP L++++KRF+ + + +K T+V+FP+ ++D +
Sbjct: 820 KKLDLWSLPPVLVVHLKRFSYSRYMRDKLDTLVDFPINDLDMSEF--------------- 864
Query: 258 LVKAKYESTMYDLVANIVHDGEPSNGTYRVHLYHKGIGKWYEIQDLHVTDILPQMITLTE 317
L+ Y+L+A H G G Y +K GKWY D V+ I
Sbjct: 865 LINPNAGPCRYNLIAVSNHYGGMGGGHYTAFAKNKDDGKWYYFDDSSVSTASEDQIVSKA 924
Query: 318 AYIQIYELRTTPSPTA 333
AY+ Y+ + T S T
Sbjct: 925 AYVLFYQRQDTFSGTG 940
Score = 39.3 bits (90), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 79/183 (43%), Gaps = 28/183 (15%)
Query: 1 ALCHVTPLRDYFLR-----EINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSP 55
L + PL +YFL E+N+ G+ + + + EL++++W+ + S+V+P
Sbjct: 306 CLSNTPPLTEYFLNDKYQEELNFDNPLGMRGE----IAKSYAELIKQMWSGK--FSYVTP 359
Query: 56 HEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKK------------DSSI 103
V ++ QF +Q D + L++ L+ LH LN +KK D +
Sbjct: 360 RAFKTQVGRFA-PQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIQLKDADGRPDKVV 418
Query: 104 VYKTFLGSMKVKTRKIPPVELEEKVRQRLLLTEEYKETETESPFLYLTCDLPPPPLFKDE 163
+ + +K I + + L+ E K + T PF YLT P P+ K+
Sbjct: 419 AEEAWENHLKRNDSIIVDI-FHGLFKSTLVCPECAKISVTFDPFCYLTL---PLPMKKER 474
Query: 164 VLE 166
LE
Sbjct: 475 TLE 477
>sp|Q2HJE4|UBP15_BOVIN Ubiquitin carboxyl-terminal hydrolase 15 OS=Bos taurus GN=USP15
PE=2 SV=1
Length = 952
Score = 55.5 bits (132), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 15/136 (11%)
Query: 198 KRFEITSLPPYLILYVKRFTKNTFFVEKNPTIVNFPVKNVDFGDILTPEVKAKYESTMYD 257
K+ ++ SLPP L++++KRF+ + + +K T+V+FP+ ++D +
Sbjct: 791 KKLDLWSLPPVLVVHLKRFSYSRYMRDKLDTLVDFPINDLDMSEF--------------- 835
Query: 258 LVKAKYESTMYDLVANIVHDGEPSNGTYRVHLYHKGIGKWYEIQDLHVTDILPQMITLTE 317
L+ Y+L+A H G G Y +K GKWY D V+ I
Sbjct: 836 LINPNAGPCRYNLIAVSNHYGGMGGGHYTAFAKNKDDGKWYYFDDSSVSTASEDQIVSKA 895
Query: 318 AYIQIYELRTTPSPTA 333
AY+ Y+ + T S T
Sbjct: 896 AYVLFYQRQDTFSGTG 911
Score = 39.7 bits (91), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 79/183 (43%), Gaps = 28/183 (15%)
Query: 1 ALCHVTPLRDYFLR-----EINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSP 55
L + PL +YFL E+N+ G+ + + + EL++++W+ + S+V+P
Sbjct: 277 CLSNTPPLTEYFLNDKYQEELNFDNPLGMRGE----IAKSYAELIKQMWSGK--YSYVTP 330
Query: 56 HEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKK------------DSSI 103
V ++ QF +Q D + L++ L+ LH LN +KK D +
Sbjct: 331 RAFKTQVGRFA-PQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIQLKDADGRPDKVV 389
Query: 104 VYKTFLGSMKVKTRKIPPVELEEKVRQRLLLTEEYKETETESPFLYLTCDLPPPPLFKDE 163
+ + +K I + + L+ E K + T PF YLT P P+ K+
Sbjct: 390 AEEAWENHLKRNDSIIVDI-FHGLFKSTLVCPECAKISVTFDPFCYLTL---PLPMKKER 445
Query: 164 VLE 166
LE
Sbjct: 446 TLE 448
>sp|B2GUX4|UBP21_RAT Ubiquitin carboxyl-terminal hydrolase 21 OS=Rattus norvegicus
GN=Usp21 PE=2 SV=1
Length = 565
Score = 55.1 bits (131), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 77/359 (21%), Positives = 137/359 (38%), Gaps = 56/359 (15%)
Query: 1 ALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEMLQ 60
L PLRD+ LR V P G + L + F +++ LW+P + ++ V+P +
Sbjct: 229 CLSSTRPLRDFCLRRDFRQEV--PGGGRAQELTEAFADVIGALWHPDSCEA-VNP-TRFR 284
Query: 61 AVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDSSIVYKTFLGSMKVKTRKIP 120
AV F Q D +FL + LH +N ++ I+ G + R+
Sbjct: 285 AVFQKYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPPILAS---GPVPSPPRRGG 341
Query: 121 PV----ELEEKVRQRLLLTEEYKETETESPFLYLT---------------------CDLP 155
+ EL + R L+ + +++ L++ CDL
Sbjct: 342 ALHEEPELSDDDRANLMWKRYLEREDSKIVDLFVGQLKSCLKCQACGYRSTTFEVFCDLS 401
Query: 156 PPPLFKDEVLENIIPQVNLYTILTKFNN-ESEK----EYKTYKENFLKRFEITSLPPYLI 210
P + K + + +++ TK ESE + K K+ + P L+
Sbjct: 402 LP-IPKKGFAGGKVSLRDCFSLFTKEEELESENAPVCDRCRQKTRSTKKLTVQRFPRILV 460
Query: 211 LYVKRFTKNTFFVEKNPTIVNFPVKNVDFGDILTPEVKAKYESTMYDLVKAKYESTMYDL 270
L++ RF+ + ++K+ V+FP++ + GD + +V S +Y L
Sbjct: 461 LHLNRFSTSRGSIKKSSVGVDFPLQRLSLGDFASDKVG----------------SPVYQL 504
Query: 271 VANIVHDGEPSNGTYRVHLYHKGIGKWYEIQDLHVTDILPQMITLTEAYIQIYELRTTP 329
A H G G Y L G W+ D V+ + + +E Y+ Y+L P
Sbjct: 505 YALCNHSGSVHYGHY-TALCRCQTG-WHVYNDSRVSPVSENQVASSEGYVLFYQLMQEP 561
>sp|A6QNM7|UBP33_BOVIN Ubiquitin carboxyl-terminal hydrolase 33 OS=Bos taurus GN=USP33
PE=2 SV=1
Length = 912
Score = 55.1 bits (131), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 56/129 (43%), Gaps = 14/129 (10%)
Query: 195 NFLKRFEITSLPPYLILYVKRFTKNTFFVEKNPTIVNFPVKNVDFGDILTPEVKAKYEST 254
N +K ++ P L +++KRF F K T V+FP++ +D L +
Sbjct: 568 NGVKFCKVQKFPEILCIHLKRFRHELMFSTKISTHVSFPLEGLDLQPFLAKD-------- 619
Query: 255 MYDLVKAKYESTMYDLVANIVHDGEPSNGTYRVHLYHKGIGKWYEIQDLHVTDILPQMIT 314
+ + YDL++ I H G S+G Y + + WYE D VT++ +
Sbjct: 620 ------SPVQIVTYDLLSVICHHGTASSGHYIAYCRNNLNNLWYEFDDQSVTEVSESTVQ 673
Query: 315 LTEAYIQIY 323
EAY+ Y
Sbjct: 674 NAEAYVLFY 682
>sp|Q9QZL6|UBP21_MOUSE Ubiquitin carboxyl-terminal hydrolase 21 OS=Mus musculus GN=Usp21
PE=1 SV=1
Length = 566
Score = 54.7 bits (130), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 77/360 (21%), Positives = 135/360 (37%), Gaps = 57/360 (15%)
Query: 1 ALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEMLQ 60
L PLRD+ LR V P G + L + F +++ LW+P + ++ V+P +
Sbjct: 229 CLSSTRPLRDFCLRRDFRQEV--PGGGRAQELTEAFADVIGALWHPDSCEA-VNP-TRFR 284
Query: 61 AVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDSSIVYKTFLGSMKVKTRKIP 120
AV F Q D +FL + LH +N ++ I+ G + R+
Sbjct: 285 AVFQKYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPPILAS---GPVPSPPRRGG 341
Query: 121 PV-----ELEEKVRQRLLLTEEYKETETESPFLYLT---------------------CDL 154
EL + R L+ + +++ L++ CDL
Sbjct: 342 GALHEEPELSDDDRANLMWKRYLEREDSKIVDLFVGQLKSCLKCQACGYRSTTFEVFCDL 401
Query: 155 PPPPLFKDEVLENIIPQVNLYTILTKFNN-ESEK----EYKTYKENFLKRFEITSLPPYL 209
P + K + + +++ TK ESE + K K+ + P L
Sbjct: 402 SLP-IPKKGFAGGKVSLRDCFSLFTKEEELESENAPVCDRCRQKTRSTKKLTVQRFPRIL 460
Query: 210 ILYVKRFTKNTFFVEKNPTIVNFPVKNVDFGDILTPEVKAKYESTMYDLVKAKYESTMYD 269
+L++ RF+ + ++K+ V+FP++ + GD + K S +Y
Sbjct: 461 VLHLNRFSTSRGSIKKSSVGVDFPLQRLSLGDFAS----------------DKAGSPVYQ 504
Query: 270 LVANIVHDGEPSNGTYRVHLYHKGIGKWYEIQDLHVTDILPQMITLTEAYIQIYELRTTP 329
L A H G G Y L G W+ D V+ + + +E Y+ Y+L P
Sbjct: 505 LYALCNHSGSVHYGHY-TALCRCQTG-WHVYNDSRVSPVSENQVASSEGYVLFYQLMQEP 562
>sp|Q9UK80|UBP21_HUMAN Ubiquitin carboxyl-terminal hydrolase 21 OS=Homo sapiens GN=USP21
PE=1 SV=1
Length = 565
Score = 54.7 bits (130), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 77/359 (21%), Positives = 135/359 (37%), Gaps = 56/359 (15%)
Query: 1 ALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEMLQ 60
L PLRD+ LR V P G + L + F +++ LW+P + ++ V+P +
Sbjct: 229 CLSSTRPLRDFCLRRDFRQEV--PGGGRAQELTEAFADVIGALWHPDSCEA-VNP-TRFR 284
Query: 61 AVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDSSIVYKTFLGSMKVKTRKIP 120
AV F Q D +FL + LH +N ++ I+ G + R+
Sbjct: 285 AVFQKYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPPILAN---GPVPSPPRRGG 341
Query: 121 PV----ELEEKVRQRLLLTEEYKETETESPFLYLT---------------------CDLP 155
+ EL + R L+ + +++ L++ CDL
Sbjct: 342 ALLEEPELSDDDRANLMWKRYLEREDSKIVDLFVGQLKSCLKCQACGYRSTTFEVFCDLS 401
Query: 156 PPPLFKDEVLENIIPQVNLYTILTKFNN-ESEK----EYKTYKENFLKRFEITSLPPYLI 210
P + K + + + + TK ESE + K K+ + P L+
Sbjct: 402 LP-IPKKGFAGGKVSLRDCFNLFTKEEELESENAPVCDRCRQKTRSTKKLTVQRFPRILV 460
Query: 211 LYVKRFTKNTFFVEKNPTIVNFPVKNVDFGDILTPEVKAKYESTMYDLVKAKYESTMYDL 270
L++ RF+ + ++K+ V+FP++ + GD + K S +Y L
Sbjct: 461 LHLNRFSASRGSIKKSSVGVDFPLQRLSLGDFAS----------------DKAGSPVYQL 504
Query: 271 VANIVHDGEPSNGTYRVHLYHKGIGKWYEIQDLHVTDILPQMITLTEAYIQIYELRTTP 329
A H G G Y L G W+ D V+ + + +E Y+ Y+L P
Sbjct: 505 YALCNHSGSVHYGHY-TALCRCQTG-WHVYNDSRVSPVSENQVASSEGYVLFYQLMQEP 561
>sp|F6Z5C0|UBP15_XENTR Ubiquitin carboxyl-terminal hydrolase 15 OS=Xenopus tropicalis
GN=usp15 PE=2 SV=2
Length = 982
Score = 54.7 bits (130), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 62/136 (45%), Gaps = 15/136 (11%)
Query: 198 KRFEITSLPPYLILYVKRFTKNTFFVEKNPTIVNFPVKNVDFGDILTPEVKAKYESTMYD 257
K+ ++ SLPP L++++KRF+ + + +K T+V+FP+ ++D
Sbjct: 820 KKLDLWSLPPVLVVHLKRFSYSRYMRDKLDTLVDFPISDLDMSTF--------------- 864
Query: 258 LVKAKYESTMYDLVANIVHDGEPSNGTYRVHLYHKGIGKWYEIQDLHVTDILPQMITLTE 317
L+ Y+L+A H G G Y +K GKWY D V+ + I
Sbjct: 865 LINPNAGPCCYNLIAVSNHYGGMGGGHYTAFAKNKDDGKWYYFDDSSVSTASEEQIVSKA 924
Query: 318 AYIQIYELRTTPSPTA 333
AY+ Y+ + T + T
Sbjct: 925 AYVLFYQRQDTITGTG 940
Score = 38.5 bits (88), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 78/180 (43%), Gaps = 22/180 (12%)
Query: 1 ALCHVTPLRDYFLRE--INYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEM 58
L + PL +YFL + + + P G + + + EL++++W+ + S+V+P
Sbjct: 305 CLSNTPPLTEYFLNDKYQDELNMDNPLGMRG-EIAKSYAELIKQMWSGK--YSYVTPRAF 361
Query: 59 LQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKK------------DSSIVYK 106
V ++ QF +Q D + L++ L+ LH LN +KK D + +
Sbjct: 362 KTQVGRFA-PQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIQLKDADGRPDKVVAEE 420
Query: 107 TFLGSMKVKTRKIPPVELEEKVRQRLLLTEEYKETETESPFLYLTCDLPPPPLFKDEVLE 166
+ +K I + + L+ E K + T PF YLT P P+ K+ LE
Sbjct: 421 AWENHIKRNDSIIVDI-FHGLFKSTLVCPECSKISVTFDPFCYLTL---PLPMKKERALE 476
>sp|Q2KJ72|UBP21_BOVIN Ubiquitin carboxyl-terminal hydrolase 21 OS=Bos taurus GN=USP21
PE=2 SV=1
Length = 565
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 77/356 (21%), Positives = 134/356 (37%), Gaps = 50/356 (14%)
Query: 1 ALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEMLQ 60
L PLRD+ LR V P G + L + F +++ LW+P + ++ V+P +
Sbjct: 229 CLSSTRPLRDFCLRRDFRQEV--PGGGRAQELTEAFADVIGALWHPDSCEA-VNP-TRFR 284
Query: 61 AVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDSSIVYKT------FLGSMKV 114
AV F Q D +FL + LH +N ++ I+ + LG +
Sbjct: 285 AVFQKYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPPILASSPAPHPPRLGGALL 344
Query: 115 KTRKIPPVELEEKVRQRLLLTEEYK----------------ETETESPFLYLTCDLPPPP 158
+ ++ + + +R L E+ K S + CDL P
Sbjct: 345 EEPELSDDDRANLMWKRYLEREDSKIVDLFVGQLKSCLKCQACGYRSTTFEVFCDLSLP- 403
Query: 159 LFKDEVLENIIPQVNLYTILTKFNN-ESEK----EYKTYKENFLKRFEITSLPPYLILYV 213
+ K + + + + TK ESE + K K+ + P L+L++
Sbjct: 404 IPKKGFAGGKVSLRDCFNLFTKEEELESENAPVCDRCRQKTRSTKKLTVQRFPRILVLHL 463
Query: 214 KRFTKNTFFVEKNPTIVNFPVKNVDFGDILTPEVKAKYESTMYDLVKAKYESTMYDLVAN 273
RF+ + ++K+ V+FP++ + GD + K S +Y L A
Sbjct: 464 NRFSASRGSIKKSSVGVDFPLQRLSLGDFAS----------------DKAGSPVYQLYAL 507
Query: 274 IVHDGEPSNGTYRVHLYHKGIGKWYEIQDLHVTDILPQMITLTEAYIQIYELRTTP 329
H G G Y L G W+ D V+ + + +E Y+ Y+L P
Sbjct: 508 CNHSGSVHYGHY-TALCRCQTG-WHVYNDSRVSPVSENQVASSEGYVLFYQLMQEP 561
>sp|Q01988|UBP11_CANFA Ubiquitin carboxyl-terminal hydrolase 11 (Fragment) OS=Canis
familiaris GN=USP11 PE=2 SV=1
Length = 445
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 73/155 (47%), Gaps = 13/155 (8%)
Query: 172 VNLYTILTKFNNESEKEYKTYKENFL--KRFEITSLPPYLILYVKRFTKNTFFVEKNPTI 229
+ L+T + E+ T K++ L K+ ++ LP LI+++KRF+ F EK T+
Sbjct: 267 IELFTTVETLEKENPWFCPTCKQHQLATKKLDLWMLPETLIIHLKRFSYTKFSREKLDTL 326
Query: 230 VNFPVKNVDFGDILTPEVKAKYESTMYDLVKAKYESTMYDLVANIVHDGEPSNGTYRVHL 289
V FP++++DF + + +K + ES E YDL+A H G +G Y
Sbjct: 327 VEFPIRDLDFSEFV---IKPQNESAP--------ELYKYDLIAVSNHYGGLRDGHYTTFA 375
Query: 290 YHKGIGKWYEIQDLHVTDILPQMITLTEAYIQIYE 324
+K G+ D V+ + I AY+ Y+
Sbjct: 376 CNKDSGQSDYFDDNSVSPVTENQIESKAAYVLFYQ 410
>sp|O22207|UBP5_ARATH Ubiquitin carboxyl-terminal hydrolase 5 OS=Arabidopsis thaliana
GN=UBP5 PE=1 SV=2
Length = 924
Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 57/130 (43%), Gaps = 14/130 (10%)
Query: 198 KRFEITSLPPYLILYVKRFTKNTFFVEKNPTIVNFPVKNVDFGDILTPEVKAKYESTMYD 257
K+ ++ LP L++++KRF+ + K T VNFP+ ++D T Y
Sbjct: 802 KKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDLDL--------------TKYV 847
Query: 258 LVKAKYESTMYDLVANIVHDGEPSNGTYRVHLYHKGIGKWYEIQDLHVTDILPQMITLTE 317
K + +Y+L A H G +G Y H+ +WY D H++ I +
Sbjct: 848 ANKNLSQPQLYELYALTNHYGGMGSGHYTAHIKLLDDSRWYNFDDSHISHINEDDVKSGA 907
Query: 318 AYIQIYELRT 327
AY+ Y ++
Sbjct: 908 AYVLFYRRKS 917
Score = 37.0 bits (84), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 48/103 (46%), Gaps = 11/103 (10%)
Query: 1 ALCHVTPLRDYFL----REINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPH 56
L H YF +EIN+ + P G L + FG+L+RKLW P ++ ++P
Sbjct: 334 CLVHTPEFASYFQEDYHQEINW---QNPLGMVGELALA-FGDLLRKLWAPG--RTPIAPR 387
Query: 57 EMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKK 99
+ ++ QF Q D + L++ L+ LH LN K K
Sbjct: 388 PFKAKLARFA-PQFSGYNQHDSQELLAFLLDGLHEDLNRVKHK 429
>sp|Q9FPS3|UBP24_ARATH Ubiquitin carboxyl-terminal hydrolase 24 OS=Arabidopsis thaliana
GN=UBP24 PE=1 SV=1
Length = 551
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 66/274 (24%), Positives = 105/274 (38%), Gaps = 46/274 (16%)
Query: 75 QSDPIDFLSWFLNTLHRAL--------NGTKKKDSSIVYKTFLG-----------SMKVK 115
Q D +FLS+ ++ +H L T K S I G S +
Sbjct: 298 QEDAQEFLSFIMDQMHDELLKLKEQSPKVTASKSSVISSANDDGDEWETVGPKNKSAVTR 357
Query: 116 TRKIPPVELEEKVRQRL---LLTEEYKETETESPFLYLTCDLPPPPLFKDEVLENIIPQV 172
T+ P EL E +L + + K + T P+L L D+ P + ++ I +
Sbjct: 358 TQSFVPSELSEIFGGQLKSVVKAKGTKASATVQPYLLLHLDIHP------DGVQGIEDAL 411
Query: 173 NLYTILTKFNN-ESEKEYKTYKENFLKRFEITSLPPYLILYVKRFTKNTFFVEKNPTIVN 231
+L++ + KT + K +I L +IL++ RF+ + K V
Sbjct: 412 HLFSAQEDLEGYRASVTGKTGVVSASKSIKIQKLSKIMILHLMRFSYGSQGSTKLRKGVK 471
Query: 232 FPVKNVDFGDILTPEVKAKYESTMYDLVKAKYESTMYDLVANIVHDG-EPSNGTYRVHLY 290
FP++ LV ES Y+LVA I H G +PS G Y
Sbjct: 472 FPLE---------------LNLNRSHLVSLSNESLRYELVATITHHGWDPSKGHYTTDAR 516
Query: 291 HKGIGKWYEIQDLHVTDILPQMITLTEAYIQIYE 324
K G+W D VT I +++ +AY+ Y+
Sbjct: 517 RKN-GQWLRFDDASVTPIGTKLVLHDQAYVLFYK 549
>sp|Q9UPT9|UBP22_HUMAN Ubiquitin carboxyl-terminal hydrolase 22 OS=Homo sapiens GN=USP22
PE=1 SV=2
Length = 525
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 85/360 (23%), Positives = 143/360 (39%), Gaps = 70/360 (19%)
Query: 1 ALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPH---E 57
AL H LRD+FL + + ++ P S LV L ++ + H SPH +
Sbjct: 193 ALTHTPLLRDFFLSDRHRCEMQSP----SSCLVCEMSSLFQEF-----YSGHRSPHIPYK 243
Query: 58 MLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRAL----NGTKKKD----SSIVYKTFL 109
+L V +R + EQ D +FL L+ LHR NG K + + I+ + F
Sbjct: 244 LLHLVWTHARHLAGY-EQQDAHEFLIAALDVLHRHCKGDDNGKKANNPNHCNCIIDQIFT 302
Query: 110 GSMKVKTRKIPPVELEEKVRQRLLLTEEYKETETESPFLYLTCDLPPP--------PLFK 161
G L+ V ++ + + T PF ++ DLP P +
Sbjct: 303 GG------------LQSDVTCQVC----HGVSTTIDPFWDISLDLPGSSTPFWPLSPGSE 346
Query: 162 DEVL---ENIIPQVNLYTILTKFN-----NESEK----EYKTYKENFLKRFEITSLPPYL 209
V+ ++ L L +F S K +Y+E+ K+ + LP
Sbjct: 347 GNVVNGESHVSGTTTLTDCLRRFTRPEHLGSSAKIKCSGCHSYQES-TKQLTMKKLPIVA 405
Query: 210 ILYVKRFTKNTFFVEKNPTIVNFPVKNVDFGDILTPEVKAKYESTMYDLVKAKYES---- 265
++KRF + K T V+FP++ +D +TP + + ES M + +S
Sbjct: 406 CFHLKRFEHSAKLRRKITTYVSFPLE-LD----MTPFMASSKESRMNGQYQQPTDSLNND 460
Query: 266 TMYDLVANIVHDGEPSNGTYRVHL-YHKGIGKWYEIQDLHVTDILPQMITLTEAYIQIYE 324
Y L A + H G +G Y + HK +W++ D +T + + +E Y+ Y
Sbjct: 461 NKYSLFAVVNHQGTLESGHYTSFIRQHK--DQWFKCDDAIITKASIKDVLDSEGYLLFYH 518
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.137 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 132,646,026
Number of Sequences: 539616
Number of extensions: 5733828
Number of successful extensions: 14231
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 119
Number of HSP's that attempted gapping in prelim test: 13945
Number of HSP's gapped (non-prelim): 273
length of query: 337
length of database: 191,569,459
effective HSP length: 118
effective length of query: 219
effective length of database: 127,894,771
effective search space: 28008954849
effective search space used: 28008954849
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)