Query psy1343
Match_columns 337
No_of_seqs 172 out of 1502
Neff 9.1
Searched_HMMs 46136
Date Fri Aug 16 19:15:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1343.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1343hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02669 Peptidase_C19M A subfa 100.0 2.7E-59 5.9E-64 445.4 26.8 302 1-324 137-440 (440)
2 KOG1865|consensus 100.0 1.7E-57 3.7E-62 419.7 18.5 269 1-326 126-410 (545)
3 COG5560 UBP12 Ubiquitin C-term 100.0 1.5E-55 3.2E-60 408.2 12.9 292 1-327 283-823 (823)
4 cd02660 Peptidase_C19D A subfa 100.0 9E-54 1.9E-58 395.5 24.8 295 1-324 18-328 (328)
5 cd02668 Peptidase_C19L A subfa 100.0 1.4E-53 2.9E-58 393.1 21.8 269 1-324 17-324 (324)
6 cd02663 Peptidase_C19G A subfa 100.0 1.7E-53 3.6E-58 388.4 21.3 245 30-324 21-300 (300)
7 cd02657 Peptidase_C19A A subfa 100.0 3.1E-53 6.7E-58 388.0 22.3 268 1-324 17-305 (305)
8 cd02658 Peptidase_C19B A subfa 100.0 2E-52 4.4E-57 383.6 23.6 274 1-324 17-311 (311)
9 cd02667 Peptidase_C19K A subfa 100.0 1.6E-51 3.6E-56 371.4 18.7 221 54-324 31-279 (279)
10 cd02661 Peptidase_C19E A subfa 100.0 1.2E-50 2.6E-55 370.5 21.9 267 1-324 19-304 (304)
11 cd02664 Peptidase_C19H A subfa 100.0 8.6E-51 1.9E-55 374.5 19.4 267 1-324 17-327 (327)
12 cd02671 Peptidase_C19O A subfa 100.0 1.6E-49 3.4E-54 364.7 21.3 261 1-324 42-332 (332)
13 cd02659 peptidase_C19C A subfa 100.0 2.3E-49 5E-54 366.9 21.6 281 1-327 20-333 (334)
14 COG5533 UBP5 Ubiquitin C-termi 100.0 2.9E-46 6.4E-51 320.6 17.9 277 1-326 89-414 (415)
15 cd02662 Peptidase_C19F A subfa 100.0 3.6E-45 7.8E-50 322.8 16.1 182 74-324 33-240 (240)
16 cd02673 Peptidase_C19Q A subfa 100.0 6.2E-45 1.3E-49 320.0 16.3 215 54-324 13-245 (245)
17 KOG1868|consensus 100.0 2.8E-45 6.1E-50 353.3 12.7 288 1-330 319-650 (653)
18 cd02674 Peptidase_C19R A subfa 100.0 2.8E-43 6E-48 309.4 17.7 201 74-324 21-230 (230)
19 KOG0944|consensus 100.0 8.8E-43 1.9E-47 325.7 18.3 290 1-327 325-763 (763)
20 cd02665 Peptidase_C19I A subfa 100.0 1.6E-43 3.4E-48 305.5 12.2 191 74-324 21-228 (228)
21 KOG1867|consensus 100.0 2.7E-42 5.8E-47 327.0 14.4 289 2-329 180-487 (492)
22 PF00443 UCH: Ubiquitin carbox 100.0 7.9E-41 1.7E-45 298.9 15.3 236 1-323 19-269 (269)
23 KOG2026|consensus 100.0 1.1E-40 2.5E-45 293.7 14.0 290 1-326 152-441 (442)
24 KOG1870|consensus 100.0 1.3E-39 2.8E-44 329.2 14.9 290 1-327 264-842 (842)
25 cd02666 Peptidase_C19J A subfa 100.0 6.8E-40 1.5E-44 300.6 11.6 276 1-324 19-343 (343)
26 KOG1866|consensus 100.0 4.7E-41 1E-45 316.3 3.9 291 2-332 114-440 (944)
27 cd02257 Peptidase_C19 Peptidas 100.0 6.5E-37 1.4E-41 270.4 17.2 215 74-324 21-255 (255)
28 COG5207 UBP14 Isopeptidase T [ 100.0 2.5E-35 5.4E-40 267.8 15.7 265 30-326 348-749 (749)
29 KOG1873|consensus 100.0 1.2E-36 2.5E-41 287.5 3.8 145 171-326 677-877 (877)
30 cd02670 Peptidase_C19N A subfa 100.0 6.4E-35 1.4E-39 254.0 14.3 195 74-324 22-241 (241)
31 cd02672 Peptidase_C19P A subfa 100.0 2E-35 4.3E-40 263.1 11.2 213 2-324 34-268 (268)
32 COG5077 Ubiquitin carboxyl-ter 100.0 4.5E-36 9.8E-41 283.3 5.0 249 30-328 234-513 (1089)
33 KOG4598|consensus 100.0 6E-36 1.3E-40 280.0 5.2 251 50-331 121-446 (1203)
34 PF13423 UCH_1: Ubiquitin carb 100.0 1.9E-31 4.1E-36 242.6 17.7 256 2-305 19-295 (295)
35 KOG1864|consensus 100.0 5.9E-31 1.3E-35 253.6 12.1 248 32-326 280-572 (587)
36 KOG1863|consensus 100.0 1.3E-30 2.7E-35 270.1 9.6 275 1-330 188-489 (1093)
37 KOG1872|consensus 99.9 8.3E-26 1.8E-30 205.7 4.6 293 1-327 123-470 (473)
38 KOG1871|consensus 99.9 1.7E-24 3.7E-29 192.4 8.9 234 51-327 119-420 (420)
39 KOG1275|consensus 99.7 4.9E-18 1.1E-22 164.6 9.8 287 2-323 518-860 (1118)
40 PF15499 Peptidase_C98: Ubiqui 97.9 2E-05 4.3E-10 67.8 6.2 82 184-304 171-252 (275)
41 KOG1887|consensus 96.4 0.00088 1.9E-08 66.5 -0.1 194 73-309 547-766 (806)
42 PF05408 Peptidase_C28: Foot-a 91.2 0.26 5.7E-06 40.6 3.7 47 276-329 130-178 (193)
43 PF08715 Viral_protease: Papai 90.1 5.3 0.00011 36.6 11.4 36 54-91 144-179 (320)
44 KOG3556|consensus 76.6 0.7 1.5E-05 44.2 -0.4 35 200-234 516-550 (724)
45 PF01473 CW_binding_1: Putativ 66.2 9 0.0002 19.0 2.5 14 288-303 3-16 (19)
46 PF02099 Josephin: Josephin; 60.0 13 0.00027 30.5 3.7 33 269-307 98-130 (157)
47 PF03292 Pox_P4B: Poxvirus P4B 58.4 19 0.00041 35.6 5.0 43 264-309 520-574 (666)
48 PF14353 CpXC: CpXC protein 38.5 59 0.0013 25.2 4.3 44 132-192 2-47 (128)
49 PF00770 Peptidase_C5: Adenovi 29.6 96 0.0021 25.6 4.2 33 270-302 19-53 (183)
50 PRK09750 hypothetical protein; 28.9 84 0.0018 20.9 3.0 31 266-309 2-32 (64)
51 PF09932 DUF2164: Uncharacteri 27.2 53 0.0012 23.2 2.1 63 30-94 9-71 (76)
52 KOG1333|consensus 25.6 1.3E+02 0.0028 25.6 4.3 28 73-100 186-213 (241)
53 smart00460 TGc Transglutaminas 25.1 1E+02 0.0022 20.4 3.2 19 281-301 47-65 (68)
54 cd03172 SORL_classII Superoxid 25.0 3E+02 0.0065 20.6 6.1 41 280-327 38-80 (104)
55 PF12252 SidE: Dot/Icm substra 25.0 73 0.0016 33.9 3.3 28 274-302 53-81 (1439)
56 cd04480 RPA1_DBD_A_like RPA1_D 24.9 84 0.0018 22.4 2.9 32 294-325 51-82 (86)
57 cd00524 SORL Superoxide reduct 24.6 2.7E+02 0.0058 19.9 6.1 47 271-326 17-67 (86)
58 cd01269 PLX Pollux (PLX) Phosp 24.5 90 0.0019 24.3 3.0 29 264-292 79-108 (129)
59 PF09149 DUF1935: Domain of un 24.0 64 0.0014 24.3 2.1 17 293-309 30-46 (104)
60 PF10748 DUF2531: Protein of u 23.2 92 0.002 24.6 2.9 45 264-314 32-83 (132)
61 PHA02131 hypothetical protein 22.6 74 0.0016 20.8 1.9 25 281-310 21-45 (70)
62 COG0093 RplN Ribosomal protein 22.0 1.6E+02 0.0035 22.6 3.9 34 269-311 57-90 (122)
63 PRK14127 cell division protein 21.0 1.2E+02 0.0026 23.1 3.0 36 52-90 5-40 (109)
64 KOG2935|consensus 20.4 14 0.0003 32.3 -2.3 55 271-331 104-166 (315)
No 1
>cd02669 Peptidase_C19M A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.7e-59 Score=445.45 Aligned_cols=302 Identities=54% Similarity=0.914 Sum_probs=257.1
Q ss_pred CCCCChHHHHHhhccccccccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHhccCCCCcCCCCCHHH
Q psy1343 1 ALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPID 80 (337)
Q Consensus 1 ~L~~~~~l~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~i~p~~~~~~l~~~~~~~f~~~~QqDa~E 80 (337)
||+|+|+||+|||........ .....+++++|+.+++++|+++.++..++|.+|+++++...++.|.++.||||||
T Consensus 137 ~L~~~p~lr~~~l~~~~~~~~----~~~~~~l~~~l~~l~~kl~~~~~~~~~isP~~fl~~l~~~~~~~f~~~~QqDA~E 212 (440)
T cd02669 137 ALSHVKPIRNFFLLYENYENI----KDRKSELVKRLSELIRKIWNPRNFKGHVSPHELLQAVSKVSKKKFSITEQSDPVE 212 (440)
T ss_pred HHHCCHHHHHHHhhccccccc----cCCCcHHHHHHHHHHHHHhccccCCCccCHHHHHHHHHhhcccccCCcccCCHHH
Confidence 689999999999987644221 1223589999999999999988777899999999999877667899999999999
Q ss_pred HHHHHHHHHHHHhccCCCCCCCcceeccCCeEeeeeecCCCcchhHhhhhhccccccCc-eeeeeecceeeeccCCCCCC
Q psy1343 81 FLSWFLNTLHRALNGTKKKDSSIVYKTFLGSMKVKTRKIPPVELEEKVRQRLLLTEEYK-ETETESPFLYLTCDLPPPPL 159 (337)
Q Consensus 81 fl~~ll~~l~~~~~~~~~~~~~~i~~~F~g~~~~~~~~~~~~~~~~~~~~~~~C~~C~~-~s~~~e~f~~lsl~ip~~~~ 159 (337)
||.+|||.||++++...+...++|.++|+|++++.++|+.+....+.. ...|..|+. .+.+.+||++|+|+||..+.
T Consensus 213 Fl~~LLd~L~~~l~~~~~~~~~ii~~~F~G~l~~~~~c~~~~~~~~~~--~~~~~~c~~~~s~~~~pF~~LsLdip~~~~ 290 (440)
T cd02669 213 FLSWLLNTLHKDLGGSKKPNSSIIHDCFQGKVQIETQKIKPHAEEEGS--KDKFFKDSRVKKTSVSPFLLLTLDLPPPPL 290 (440)
T ss_pred HHHHHHHHHHHHhccCCCCCCCcceeccCceEEEEEEeeccccccccc--ccccccccccceeeeccceEEEecCCCCcc
Confidence 999999999999987666678999999999999988877664332221 224667774 67888999999999999888
Q ss_pred ccccccccCCCcccHHHHHhhhcccchhhhcccccceeEEEEeecCCCceEEEEeeeccCCcccccCCceEeeCCCCCCC
Q psy1343 160 FKDEVLENIIPQVNLYTILTKFNNESEKEYKTYKENFLKRFEITSLPPYLILYVKRFTKNTFFVEKNPTIVNFPVKNVDF 239 (337)
Q Consensus 160 ~~~~~~~~~~~~~sl~~~L~~~~~~~~~~c~~~~~~~~k~~~i~~lP~~Lii~l~Rf~~~~~~~~K~~~~v~fp~~~Ldl 239 (337)
+.+....+.++.++|++||++|.+++|..+ ..++|+..|.++|+||+||||||.++.+..+|+++.|+||++.|||
T Consensus 291 ~~~~~~~~~l~~~~l~e~L~ky~~~~c~~~----~~a~k~~~I~~LP~vLiihLKRF~~~~~~~~K~~t~V~FP~~~LDm 366 (440)
T cd02669 291 FKDGNEENIIPQVPLKQLLKKYDGKTETEL----KDSLKRYLISRLPKYLIFHIKRFSKNNFFKEKNPTIVNFPIKNLDL 366 (440)
T ss_pred ccccccccccCcccHHHHHHhcCCccceec----ccceEEEEEeeCCcEEEEEEecccCCCCccccCCCEEECCCCccch
Confidence 777777777889999999999987776553 5679999999999999999999998877778999999999656899
Q ss_pred CCCCCchhhhhcchhhhhhhhccCCCcceeEeEEEEeecCC-CCCeEEEEEEeCCCCcEEEecCCcccccCccccccCCc
Q psy1343 240 GDILTPEVKAKYESTMYDLVKAKYESTMYDLVANIVHDGEP-SNGTYRVHLYHKGIGKWYEIQDLHVTDILPQMITLTEA 318 (337)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avi~H~G~~-~~GHY~a~vk~~~~~~W~~~nD~~V~~v~~~~v~~~~a 318 (337)
++|+..+..... ....|+|+|||+|.|+. ++|||+||+|+..+|+||+|||+.|+++++++|...+|
T Consensus 367 ~~y~~~~~~~~~------------~~~~Y~L~avI~H~G~~~~sGHY~a~v~~~~~~~W~~fdD~~V~~v~~~~v~~~ea 434 (440)
T cd02669 367 SDYVHFDKPSLN------------LSTKYNLVANIVHEGTPQEDGTWRVQLRHKSTNKWFEIQDLNVKEVLPQLIFLSES 434 (440)
T ss_pred hhhhCccccccC------------CCceEEEEEEEEEeccCCCCeeEEEEEEcCCCCeEEEEECCeeeEcCHHHhccCCc
Confidence 999975332222 67899999999999997 99999999998668999999999999999999999999
Q ss_pred EEEEEE
Q psy1343 319 YIQIYE 324 (337)
Q Consensus 319 YiLfY~ 324 (337)
|||||+
T Consensus 435 Yll~Y~ 440 (440)
T cd02669 435 YIQIWE 440 (440)
T ss_pred eEEEeC
Confidence 999996
No 2
>KOG1865|consensus
Probab=100.00 E-value=1.7e-57 Score=419.71 Aligned_cols=269 Identities=23% Similarity=0.363 Sum_probs=240.4
Q ss_pred CCCCChHHHHHhhccccccccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHhccCCCCcCCCCCHHH
Q psy1343 1 ALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPID 80 (337)
Q Consensus 1 ~L~~~~~l~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~i~p~~~~~~l~~~~~~~f~~~~QqDa~E 80 (337)
||.++|||.+|||...+....++ ...|++|+|+.++....... ..+|+|..|+..|... +..|..+.|.||||
T Consensus 126 cLt~T~PLv~yLls~~hs~~C~~----~~~C~lc~~q~hi~~A~~~~--g~pisP~~i~s~L~~I-~~~f~~grQEDAHE 198 (545)
T KOG1865|consen 126 CLTYTPPLVNYLLSREHSRSCHR----AKFCMLCTFQAHITRALHNP--GHPISPSQILSNLRNI-SAHFGRGRQEDAHE 198 (545)
T ss_pred HhcccHHHHHHHHHhhhhhhccc----cCeeeehHHHHHHHHHhcCC--CCccChHHHHHhhhhh-cccccCCchhhHHH
Confidence 89999999999999887755442 34899999999998887765 5599999999999775 89999999999999
Q ss_pred HHHHHHHHHHHHhccCC------CCCCCcceeccCCeEeeeeecCCCcchhHhhhhhccccccCceeeeeecceeeeccC
Q psy1343 81 FLSWFLNTLHRALNGTK------KKDSSIVYKTFLGSMKVKTRKIPPVELEEKVRQRLLLTEEYKETETESPFLYLTCDL 154 (337)
Q Consensus 81 fl~~ll~~l~~~~~~~~------~~~~~~i~~~F~g~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~s~~~e~f~~lsl~i 154 (337)
||++++|.|+...-... .+..++|+++|||.++ ++++|..|++++.++|+.++|+|.|
T Consensus 199 FLr~~vd~mqk~cL~g~~~~~~~sq~ttlv~~iFGG~Lr----------------S~vkC~~C~~vS~tyE~~~dltvei 262 (545)
T KOG1865|consen 199 FLRFTVDAMQKACLPGHKQVDPRSQDTTLVHQIFGGYLR----------------SQIKCLHCKGVSDTYEPYLDLTLEI 262 (545)
T ss_pred HHHHHHHHHHHhhcCCCccCCcccccceehhhhhccchh----------------hceecccCCCcccccccccceEEEe
Confidence 99999999998863221 2456889999999999 8899999999999999999999999
Q ss_pred CCCCCccccccccCCCcccHHHHHhhhcccc---------hhhhcccccceeEEEEeecCCCceEEEEeeeccCCccccc
Q psy1343 155 PPPPLFKDEVLENIIPQVNLYTILTKFNNES---------EKEYKTYKENFLKRFEITSLPPYLILYVKRFTKNTFFVEK 225 (337)
Q Consensus 155 p~~~~~~~~~~~~~~~~~sl~~~L~~~~~~~---------~~~c~~~~~~~~k~~~i~~lP~~Lii~l~Rf~~~~~~~~K 225 (337)
-.. -+|+++|+.|...| |..|+.+ .+|.|+..|.++|+||+||||||.. ++..|
T Consensus 263 ~d~--------------~sl~~AL~qFt~~E~L~gen~Y~C~~Ck~~-v~A~K~lti~raPnVLTi~LKRF~~--~~~gK 325 (545)
T KOG1865|consen 263 QDA--------------SSLQQALEQFTKPEKLDGENAYHCGRCKQK-VPASKQLTIHRAPNVLTLHLKRFSN--GTGGK 325 (545)
T ss_pred ccc--------------hhHHHHHHHhhhHHhhCCccccccchhhhh-CcccceeeeecCCceEEEeeehhcc--Ccccc
Confidence 733 38999999998765 8899988 9999999999999999999999996 55679
Q ss_pred CCceEeeCCCCCCCCCCCCchhhhhcchhhhhhhhccCCCcceeEeEEEEeecC-CCCCeEEEEEEeCCCCcEEEecCCc
Q psy1343 226 NPTIVNFPVKNVDFGDILTPEVKAKYESTMYDLVKAKYESTMYDLVANIVHDGE-PSNGTYRVHLYHKGIGKWYEIQDLH 304 (337)
Q Consensus 226 ~~~~v~fp~~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avi~H~G~-~~~GHY~a~vk~~~~~~W~~~nD~~ 304 (337)
|..+|.|| +.|||.+|+..+.. ....|.|||||+|.|. ..+|||+||||.. +|.||.+||+.
T Consensus 326 I~K~I~fP-E~LDl~PyMS~~~e---------------~s~~Y~LYavlVH~g~~~~~GHY~cYvks~-~g~Wy~~DDS~ 388 (545)
T KOG1865|consen 326 ISKPVSFP-ETLDLQPYMSQPNE---------------GSTVYKLYAVLVHLGTSCHSGHYFCYVKSQ-NGQWYKMDDSE 388 (545)
T ss_pred cccccCCc-ccccccccccCCCC---------------CCceEEEEEEEEeccccccCCceEEEEEcC-CCceEEccCce
Confidence 99999999 89999999995543 5789999999999998 5999999999995 89999999999
Q ss_pred ccccCccccccCCcEEEEEEec
Q psy1343 305 VTDILPQMITLTEAYIQIYELR 326 (337)
Q Consensus 305 V~~v~~~~v~~~~aYiLfY~r~ 326 (337)
|+.++.+.|+++.||||||.|.
T Consensus 389 V~~~~~~~VLsq~AYmLfY~R~ 410 (545)
T KOG1865|consen 389 VTQSSIESVLSQQAYILFYARK 410 (545)
T ss_pred eeeccccceecccceEEEEEee
Confidence 9999999999999999999997
No 3
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-55 Score=408.18 Aligned_cols=292 Identities=25% Similarity=0.397 Sum_probs=255.9
Q ss_pred CCCCChHHHHHhhccccccccCCC-CCCCchHHHHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHhccCCCCcCCCCCHH
Q psy1343 1 ALCHVTPLRDYFLREINYARVKRP-PGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPI 79 (337)
Q Consensus 1 ~L~~~~~l~~~~l~~~~~~~~~~~-~~~~~~~l~~~l~~l~~~l~~~~~~~~~i~p~~~~~~l~~~~~~~f~~~~QqDa~ 79 (337)
||.|++.||+||++..+.+.++.. |....+.++.+++.|+++++.++ ..+++|+.|+..|+.. +..|.++.|||+|
T Consensus 283 CL~ht~eLrdyFlsdeye~~iNe~Nplgmhg~vAsayadLik~ly~~~--~haf~Ps~fK~tIG~f-n~~fsGy~QQDSq 359 (823)
T COG5560 283 CLMHTWELRDYFLSDEYEESINEENPLGMHGSVASAYADLIKQLYDGN--LHAFTPSGFKKTIGSF-NEEFSGYDQQDSQ 359 (823)
T ss_pred HHhccHHHHHHhhhhhhHhhhcccCccchhhhHHHHHHHHHHHHhCcc--ccccChHHHHHHHhhh-HHHhcCccchhHH
Confidence 899999999999999988887763 56667899999999999999998 7899999999999775 8999999999999
Q ss_pred HHHHHHHHHHHHHhccCC------------------------------CCCCCcceeccCCeEeeeeecCCCcchhHhhh
Q psy1343 80 DFLSWFLNTLHRALNGTK------------------------------KKDSSIVYKTFLGSMKVKTRKIPPVELEEKVR 129 (337)
Q Consensus 80 Efl~~ll~~l~~~~~~~~------------------------------~~~~~~i~~~F~g~~~~~~~~~~~~~~~~~~~ 129 (337)
||+.+|||.||+++++.- +++.++|.++|.|.++
T Consensus 360 EFiaflLDgLHEdLnRI~~KpytskPdL~~~d~~~vKk~a~ecW~~H~kRNdSiItdLFqgmyK---------------- 423 (823)
T COG5560 360 EFIAFLLDGLHEDLNRIIKKPYTSKPDLSPGDDVVVKKKAKECWWEHLKRNDSIITDLFQGMYK---------------- 423 (823)
T ss_pred HHHHHHHHHHHHHHHHhhcCcccCCCCCCCcchHHHHHHHHHHHHHHHhcCcccHHHHHHHHhh----------------
Confidence 999999999999998531 2578999999999999
Q ss_pred hhccccccCceeeeeecceeeeccCC------------------------------------------------------
Q psy1343 130 QRLLLTEEYKETETESPFLYLTCDLP------------------------------------------------------ 155 (337)
Q Consensus 130 ~~~~C~~C~~~s~~~e~f~~lsl~ip------------------------------------------------------ 155 (337)
+++.|..|+.++.+++||++|+||+|
T Consensus 424 STL~Cp~C~~vsitfDPfmdlTLPLPvs~vw~htiv~fp~~g~~~pl~iel~~sSt~~~lk~lv~~~~gk~gc~ei~v~~ 503 (823)
T COG5560 424 STLTCPGCGSVSITFDPFMDLTLPLPVSMVWKHTIVVFPESGRRQPLKIELDASSTIRGLKKLVDAEYGKLGCFEIKVMC 503 (823)
T ss_pred ceeeccCcCceeeeecchhhccccCchhhcccccEEEECCCCCCCceEEEEeccchHHHHHHHHHHHhccCCccceeEEE
Confidence 78899999999999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q psy1343 156 -------------------------------------------------------------------------------- 155 (337)
Q Consensus 156 -------------------------------------------------------------------------------- 155 (337)
T Consensus 504 iy~g~~y~~l~~~dk~ll~~I~~~d~vylYe~~~ngi~vpvvh~~~~~gYks~rlFg~pflqlnv~~~~~i~~kLvkE~~ 583 (823)
T COG5560 504 IYYGGNYNMLEPADKVLLQDIPQTDFVYLYETNDNGIEVPVVHLRIEKGYKSKRLFGDPFLQLNVLIKASIYDKLVKEFE 583 (823)
T ss_pred EEeccchhhcchhhHHHHhhcCccceEEEeecCCCCeEEEEEeccccccccchhhhCCcceEEEeecchhhHHHHHHHHH
Confidence
Q ss_pred ---------------------------------------C-----------CCC-------------------cc-ccc-
Q psy1343 156 ---------------------------------------P-----------PPL-------------------FK-DEV- 164 (337)
Q Consensus 156 ---------------------------------------~-----------~~~-------------------~~-~~~- 164 (337)
. ... +. +.+
T Consensus 584 ell~~v~~k~tdvd~~~~q~~l~r~es~p~~wl~l~teid~kree~veeE~~~n~nd~vvi~cew~ek~y~~lFsy~~lw 663 (823)
T COG5560 584 ELLVLVEMKKTDVDLVSEQVRLLREESSPSSWLKLETEIDTKREEQVEEEGQMNFNDAVVISCEWEEKRYLSLFSYDPLW 663 (823)
T ss_pred HHHHHHhhcchhhhhhhhhccchhcccCcchhhhhhhhccchhhhhhhhhhccCCCcceEEeeeccccchhhhhcCCccc
Confidence 0 000 00 000
Q ss_pred ----cccCCCcccHHHHHhhhcccc---------hhhhcccccceeEEEEeecCCCceEEEEeeeccCCcccccCCceEe
Q psy1343 165 ----LENIIPQVNLYTILTKFNNES---------EKEYKTYKENFLKRFEITSLPPYLILYVKRFTKNTFFVEKNPTIVN 231 (337)
Q Consensus 165 ----~~~~~~~~sl~~~L~~~~~~~---------~~~c~~~~~~~~k~~~i~~lP~~Lii~l~Rf~~~~~~~~K~~~~v~ 231 (337)
.+.-.+.+||++||..|.++| |+.|+.. ..|+|++.|+++|.||+||||||........|+.+-|+
T Consensus 664 ~~~ei~~~~rtiTL~dCl~eFskpEqLgl~DswyCpgCkef-rqasKqmelwrlP~iLiihLkRFss~rsfrdKiddlVe 742 (823)
T COG5560 664 TIREIGAAERTITLQDCLNEFSKPEQLGLSDSWYCPGCKEF-RQASKQMELWRLPMILIIHLKRFSSVRSFRDKIDDLVE 742 (823)
T ss_pred hhHHhhhccCCCcHHHHHHHhccHhhcCCcccccCCchHhh-hhhhhhhhhhcCChheeeehhhhhhcccchhhhhhhhc
Confidence 000124789999999998875 8899888 89999999999999999999999988778889999999
Q ss_pred eCCCCCCCCCCCCchhhhhcchhhhhhhhccCCCcceeEeEEEEeecCCCCCeEEEEEEeCCCCcEEEecCCcccccCcc
Q psy1343 232 FPVKNVDFGDILTPEVKAKYESTMYDLVKAKYESTMYDLVANIVHDGEPSNGTYRVHLYHKGIGKWYEIQDLHVTDILPQ 311 (337)
Q Consensus 232 fp~~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avi~H~G~~~~GHY~a~vk~~~~~~W~~~nD~~V~~v~~~ 311 (337)
||+..|||+.+...-.. +...|+|+||=+|.|.+++|||+||+|++.+++||+|||++|++++++
T Consensus 743 yPiddldLs~~~~~~~~---------------p~liydlyavDNHygglsgGHYtAyarn~~n~~wy~fdDsritevdpe 807 (823)
T COG5560 743 YPIDDLDLSGVEYMVDD---------------PRLIYDLYAVDNHYGGLSGGHYTAYARNFANNGWYLFDDSRITEVDPE 807 (823)
T ss_pred cccccccccceEEeecC---------------cceEEEeeeccccccccCCcceeeeeecccCCceEEecCccccccCcc
Confidence 99999999988754321 457999999999999999999999999998999999999999999999
Q ss_pred ccccCCcEEEEEEecC
Q psy1343 312 MITLTEAYIQIYELRT 327 (337)
Q Consensus 312 ~v~~~~aYiLfY~r~~ 327 (337)
+.....||+|||+|+.
T Consensus 808 d~vtssaYvLFyrrk~ 823 (823)
T COG5560 808 DSVTSSAYVLFYRRKS 823 (823)
T ss_pred ccccceeEEEEEEecC
Confidence 9999999999999974
No 4
>cd02660 Peptidase_C19D A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=9e-54 Score=395.46 Aligned_cols=295 Identities=22% Similarity=0.348 Sum_probs=238.7
Q ss_pred CCCCChHHHHHhhccccccccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHhccCCCCcCCCCCHHH
Q psy1343 1 ALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPID 80 (337)
Q Consensus 1 ~L~~~~~l~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~i~p~~~~~~l~~~~~~~f~~~~QqDa~E 80 (337)
||+|+|+||++++........ .......++.++|++|+..|+.... ...+.|..|+.+++.. .+.|.++.||||||
T Consensus 18 ~L~~~~~f~~~ll~~~~~~~~--~~~~~~~~~~~~l~~l~~~l~~~~~-~~~~~~~~~l~~~~~~-~~~f~~~~QqDa~E 93 (328)
T cd02660 18 ALLHNPLLRNYFLSDRHSCTC--LSCSPNSCLSCAMDEIFQEFYYSGD-RSPYGPINLLYLSWKH-SRNLAGYSQQDAHE 93 (328)
T ss_pred HHhcCHHHHHHHhcCcccccc--ccCCccccHHHHHHHHHHHHhcCCC-CCCcCHHHHHHHHHhh-chhhcccccccHHH
Confidence 689999999999987543211 1112236899999999999954321 5689999999999876 67899999999999
Q ss_pred HHHHHHHHHHHHhccCCC------CCCCcceeccCCeEeeeeecCCCcchhHhhhhhccccccCceeeeeecceeeeccC
Q psy1343 81 FLSWFLNTLHRALNGTKK------KDSSIVYKTFLGSMKVKTRKIPPVELEEKVRQRLLLTEEYKETETESPFLYLTCDL 154 (337)
Q Consensus 81 fl~~ll~~l~~~~~~~~~------~~~~~i~~~F~g~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~s~~~e~f~~lsl~i 154 (337)
|+.+|||.|++++....+ ...++|.++|+|.+. +.++|..|++.+.+.|+|+.|+|++
T Consensus 94 fl~~ll~~l~~~~~~~~~~~~~~~~~~~~i~~~F~g~~~----------------~~~~C~~C~~~s~~~e~f~~lsl~i 157 (328)
T cd02660 94 FFQFLLDQLHTHYGGDKNEANDESHCNCIIHQTFSGSLQ----------------SSVTCQRCGGVSTTVDPFLDLSLDI 157 (328)
T ss_pred HHHHHHHHHHHHhhcccccccccccCCceeEEecccEEE----------------eeeEcCCCCCccceecccceeeeec
Confidence 999999999999865532 234689999999999 6678999999999999999999999
Q ss_pred CCCCCccccc-cccCCCcccHHHHHhhhcccc--------hhhhcccccceeEEEEeecCCCceEEEEeeeccCC-cccc
Q psy1343 155 PPPPLFKDEV-LENIIPQVNLYTILTKFNNES--------EKEYKTYKENFLKRFEITSLPPYLILYVKRFTKNT-FFVE 224 (337)
Q Consensus 155 p~~~~~~~~~-~~~~~~~~sl~~~L~~~~~~~--------~~~c~~~~~~~~k~~~i~~lP~~Lii~l~Rf~~~~-~~~~ 224 (337)
|......... ........+|++||+.|+.++ |+.|+.. +.+.++..|.++|++|+|||+||.++. +...
T Consensus 158 ~~~~~~~~~~~~~~~~~~~sl~~~L~~~~~~e~~~~~~~~C~~C~~~-~~~~~~~~i~~lP~~Lii~lkRf~~~~~~~~~ 236 (328)
T cd02660 158 PNKSTPSWALGESGVSGTPTLSDCLDRFTRPEKLGDFAYKCSGCGST-QEATKQLSIKKLPPVLCFQLKRFEHSLNKTSR 236 (328)
T ss_pred cccccccccccccCCCCCCCHHHHHHHhcCccccCCCCccCCCCCCc-cceEEEEEecCCCceeEEEEEeEEecCCCCCc
Confidence 8764321111 111223579999999998764 7788876 789999999999999999999999876 5668
Q ss_pred cCCceEeeCCCCCCCCCCCCchhhhhcchhhhhhhhccCCCcceeEeEEEEeecCCCCCeEEEEEEeCCCCcEEEecCCc
Q psy1343 225 KNPTIVNFPVKNVDFGDILTPEVKAKYESTMYDLVKAKYESTMYDLVANIVHDGEPSNGTYRVHLYHKGIGKWYEIQDLH 304 (337)
Q Consensus 225 K~~~~v~fp~~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avi~H~G~~~~GHY~a~vk~~~~~~W~~~nD~~ 304 (337)
|+...|.|| ..|||.+|+..+..... ..........|+|+|||+|.|+.++|||+||+|.. +++||+|||+.
T Consensus 237 K~~~~v~fp-~~Ldl~~~~~~~~~~~~------~~~~~~~~~~Y~L~avi~H~G~~~~GHY~~~~~~~-~~~W~~~nD~~ 308 (328)
T cd02660 237 KIDTYVQFP-LELNMTPYTSSSIGDTQ------DSNSLDPDYTYDLFAVVVHKGTLDTGHYTAYCRQG-DGQWFKFDDAM 308 (328)
T ss_pred CCCcEEeCC-CEechhhhccccccccc------ccccCCCCceEEEEEEEEeeccCCCCcEEEEEECC-CCcEEEEECCe
Confidence 999999999 57999999885321100 01112267899999999999998899999999985 59999999999
Q ss_pred ccccCccccccCCcEEEEEE
Q psy1343 305 VTDILPQMITLTEAYIQIYE 324 (337)
Q Consensus 305 V~~v~~~~v~~~~aYiLfY~ 324 (337)
|+++++++|....||||||.
T Consensus 309 V~~~~~~~v~~~~ayil~Y~ 328 (328)
T cd02660 309 ITRVSEEEVLKSQAYLLFYH 328 (328)
T ss_pred eEECCHHHhcCCCcEEEEeC
Confidence 99999999999999999994
No 5
>cd02668 Peptidase_C19L A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.4e-53 Score=393.07 Aligned_cols=269 Identities=21% Similarity=0.335 Sum_probs=224.4
Q ss_pred CCCCChHHHHHhhccccccccC--C-C--CCCCchHHHHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHhccCCCCcCCC
Q psy1343 1 ALCHVTPLRDYFLREINYARVK--R-P--PGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQ 75 (337)
Q Consensus 1 ~L~~~~~l~~~~l~~~~~~~~~--~-~--~~~~~~~l~~~l~~l~~~l~~~~~~~~~i~p~~~~~~l~~~~~~~f~~~~Q 75 (337)
||+|+|+||++++......... + + ......+++++|+.||.+||.+. ...++|..|++++ .|..++|
T Consensus 17 ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lf~~l~~~~--~~~i~p~~f~~~l------~~~~~~Q 88 (324)
T cd02668 17 LWFMNLEFRKAVYECNSTEDAELKNMPPDKPHEPQTIIDQLQLIFAQLQFGN--RSVVDPSGFVKAL------GLDTGQQ 88 (324)
T ss_pred HHHCCHHHHHHHHccCcccccccccccccCCcccchHHHHHHHHHHHHHhCC--CceEChHHHHHHh------CCCCccc
Confidence 6899999999998865433211 0 0 01123589999999999999887 7799999999987 2567899
Q ss_pred CCHHHHHHHHHHHHHHHhccCC-CCCCCcceeccCCeEeeeeecCCCcchhHhhhhhccccccCceeeeeecceeeeccC
Q psy1343 76 SDPIDFLSWFLNTLHRALNGTK-KKDSSIVYKTFLGSMKVKTRKIPPVELEEKVRQRLLLTEEYKETETESPFLYLTCDL 154 (337)
Q Consensus 76 qDa~Efl~~ll~~l~~~~~~~~-~~~~~~i~~~F~g~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~s~~~e~f~~lsl~i 154 (337)
|||+||+.+|||.|++++.... ....+++.++|+|++. ..++|..|+..+.+.|+|+.|+|++
T Consensus 89 qDa~EFl~~lLd~L~~~l~~~~~~~~~~~i~~~F~G~~~----------------~~~~C~~C~~~s~~~e~f~~l~l~i 152 (324)
T cd02668 89 QDAQEFSKLFLSLLEAKLSKSKNPDLKNIVQDLFRGEYS----------------YVTQCSKCGRESSLPSKFYELELQL 152 (324)
T ss_pred cCHHHHHHHHHHHHHHHHhhccCCcccchhhhhcceEEE----------------EEEEeCCCCCccccccccEEEEEEe
Confidence 9999999999999999986432 2345789999999999 5678999999999999999999999
Q ss_pred CCCCCccccccccCCCcccHHHHHhhhcccc---------hhhhcccccceeEEEEeecCCCceEEEEeeeccCC--ccc
Q psy1343 155 PPPPLFKDEVLENIIPQVNLYTILTKFNNES---------EKEYKTYKENFLKRFEITSLPPYLILYVKRFTKNT--FFV 223 (337)
Q Consensus 155 p~~~~~~~~~~~~~~~~~sl~~~L~~~~~~~---------~~~c~~~~~~~~k~~~i~~lP~~Lii~l~Rf~~~~--~~~ 223 (337)
|.. .+|++||+.|+..+ |+.|+.. +.+.++..|.++|++|+|||+||.++. +..
T Consensus 153 ~~~--------------~sl~~~L~~~~~~e~l~g~~~~~C~~C~~~-~~a~k~~~i~~lP~iLii~LkRf~~d~~~~~~ 217 (324)
T cd02668 153 KGH--------------KTLEECIDEFLKEEQLTGDNQYFCESCNSK-TDATRRIRLTTLPPTLNFQLLRFVFDRKTGAK 217 (324)
T ss_pred ccc--------------CCHHHHHHHhhCceecCCCccccCCCCCce-eeeEEEEEecCCCCeEEEEEEcceeecccCcc
Confidence 863 38999999988653 7778766 889999999999999999999999763 457
Q ss_pred ccCCceEeeCCCCCCCCCCCCchhhhhcchhhhhhhhccCCCcceeEeEEEEeecC-CCCCeEEEEEEeCCCCcEEEecC
Q psy1343 224 EKNPTIVNFPVKNVDFGDILTPEVKAKYESTMYDLVKAKYESTMYDLVANIVHDGE-PSNGTYRVHLYHKGIGKWYEIQD 302 (337)
Q Consensus 224 ~K~~~~v~fp~~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avi~H~G~-~~~GHY~a~vk~~~~~~W~~~nD 302 (337)
.|++..|.|| +.|||++|+..... ....|+|+|||+|.|+ +++|||+||+|+..+++||+|||
T Consensus 218 ~Ki~~~v~fp-~~Ldl~~~~~~~~~---------------~~~~Y~L~~vI~H~G~~~~~GHY~~~~k~~~~~~W~~fdD 281 (324)
T cd02668 218 KKLNASISFP-EILDMGEYLAESDE---------------GSYVYELSGVLIHQGVSAYSGHYIAHIKDEQTGEWYKFND 281 (324)
T ss_pred eeCCcEEECC-CeEechhhcccccC---------------CCcEEEEEEEEEEcCCCCCCEeeEEEEECCCCCcEEEEEC
Confidence 8999999999 68999999854321 5678999999999997 69999999999876689999999
Q ss_pred CcccccCcccc---------------------ccCCcEEEEEE
Q psy1343 303 LHVTDILPQMI---------------------TLTEAYIQIYE 324 (337)
Q Consensus 303 ~~V~~v~~~~v---------------------~~~~aYiLfY~ 324 (337)
+.|++++.+.+ .+.+||||||+
T Consensus 282 ~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l~y~ 324 (324)
T cd02668 282 EDVEEMPGKPLKLGNSEDPAKPRKSEIKKGTHSSRTAYMLVYK 324 (324)
T ss_pred CceEEcCHHHhhcccccccccccccccCCCccccCceEEEEeC
Confidence 99999975544 36899999996
No 6
>cd02663 Peptidase_C19G A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.7e-53 Score=388.39 Aligned_cols=245 Identities=22% Similarity=0.323 Sum_probs=212.9
Q ss_pred hHHHHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHhccCCCCcCCCCCHHHHHHHHHHHHHHHhccCC------------
Q psy1343 30 FLLVQRFGELMRKLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTK------------ 97 (337)
Q Consensus 30 ~~l~~~l~~l~~~l~~~~~~~~~i~p~~~~~~l~~~~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~~------------ 97 (337)
.+++++|+.||.+||.+......++|..|+++++.. .+.|.++.||||||||.+|||.|++++....
T Consensus 21 ~~l~~~L~~lf~~l~~~~~~~~~isP~~f~~~l~~~-~~~f~~~~QqDA~EFl~~lLd~l~~~l~~~~~~~~~~~~~~~~ 99 (300)
T cd02663 21 ENLLTCLKDLFESISEQKKRTGVISPKKFITRLKRE-NELFDNYMHQDAHEFLNFLLNEIAEILDAERKAEKANRKLNNN 99 (300)
T ss_pred HHHHHHHHHHHHHHHhCCCCCeeECHHHHHHHHHhh-cCCCCCCccccHHHHHHHHHHHHHHHHHHHhhccccccccccc
Confidence 469999999999999876445689999999999775 7899999999999999999999999986432
Q ss_pred ---CCCCCcceeccCCeEeeeeecCCCcchhHhhhhhccccccCceeeeeecceeeeccCCCCCCccccccccCCCcccH
Q psy1343 98 ---KKDSSIVYKTFLGSMKVKTRKIPPVELEEKVRQRLLLTEEYKETETESPFLYLTCDLPPPPLFKDEVLENIIPQVNL 174 (337)
Q Consensus 98 ---~~~~~~i~~~F~g~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~s~~~e~f~~lsl~ip~~~~~~~~~~~~~~~~~sl 174 (337)
....++|.++|+|++. +.++|..|+..+.+.|+|+.|+|+||.. .+|
T Consensus 100 ~~~~~~~~~i~~~F~G~~~----------------~~~~C~~C~~~s~~~e~f~~Lsl~i~~~--------------~sl 149 (300)
T cd02663 100 NNAEPQPTWVHEIFQGILT----------------NETRCLTCETVSSRDETFLDLSIDVEQN--------------TSI 149 (300)
T ss_pred ccCCcCCCChhhhCceEEE----------------eeEEeCCCCCCccccceeEEeccCCCCc--------------CCH
Confidence 2345779999999999 6678999999999999999999999874 389
Q ss_pred HHHHhhhcccc---------hhhhcccccceeEEEEeecCCCceEEEEeeeccCCc--ccccCCceEeeCCCCCCCCCCC
Q psy1343 175 YTILTKFNNES---------EKEYKTYKENFLKRFEITSLPPYLILYVKRFTKNTF--FVEKNPTIVNFPVKNVDFGDIL 243 (337)
Q Consensus 175 ~~~L~~~~~~~---------~~~c~~~~~~~~k~~~i~~lP~~Lii~l~Rf~~~~~--~~~K~~~~v~fp~~~Ldl~~~~ 243 (337)
++||+.|+.++ |+.|+.. +.++++..|.++|++|+|||+||.++.. ...|++.+|.|| ..|+|..+.
T Consensus 150 ~~~L~~~~~~E~l~~~~~~~C~~C~~~-~~a~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fp-~~L~~~~~~ 227 (300)
T cd02663 150 TSCLRQFSATETLCGRNKFYCDECCSL-QEAEKRMKIKKLPKILALHLKRFKYDEQLNRYIKLFYRVVFP-LELRLFNTT 227 (300)
T ss_pred HHHHHHhhcccccCCCCcEECCCCCCc-eeEEEEEEeccCCceeEEEEEeEEeecccCCceecCceEecC-cEEeccccc
Confidence 99999988654 7788776 8899999999999999999999997753 467999999999 579998764
Q ss_pred CchhhhhcchhhhhhhhccCCCcceeEeEEEEeecC-CCCCeEEEEEEeCCCCcEEEecCCcccccCccccc--------
Q psy1343 244 TPEVKAKYESTMYDLVKAKYESTMYDLVANIVHDGE-PSNGTYRVHLYHKGIGKWYEIQDLHVTDILPQMIT-------- 314 (337)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avi~H~G~-~~~GHY~a~vk~~~~~~W~~~nD~~V~~v~~~~v~-------- 314 (337)
.... .....|+|+|||+|.|+ +++|||+||+|+ +++||+|||+.|++++.++|.
T Consensus 228 ~~~~---------------~~~~~Y~L~~vi~H~G~~~~~GHY~a~~k~--~~~W~~fdD~~V~~~~~~~v~~~~~~~~~ 290 (300)
T cd02663 228 DDAE---------------NPDRLYELVAVVVHIGGGPNHGHYVSIVKS--HGGWLLFDDETVEKIDENAVEEFFGDSPN 290 (300)
T ss_pred cccC---------------CCCeEEEEEEEEEEecCCCCCCceEEEEEC--CCcEEEEcCCceEEcCHHHHHHhcCCCCC
Confidence 3211 14579999999999997 799999999998 799999999999999998886
Q ss_pred cCCcEEEEEE
Q psy1343 315 LTEAYIQIYE 324 (337)
Q Consensus 315 ~~~aYiLfY~ 324 (337)
..+||||||+
T Consensus 291 ~~~aYiLfY~ 300 (300)
T cd02663 291 QATAYVLFYQ 300 (300)
T ss_pred CCceEEEEeC
Confidence 5899999995
No 7
>cd02657 Peptidase_C19A A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.1e-53 Score=387.99 Aligned_cols=268 Identities=26% Similarity=0.298 Sum_probs=226.3
Q ss_pred CCCCChHHHHHhhccccccccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHhccCCCC------cCC
Q psy1343 1 ALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEMLQAVVLWSRKQFQ------FTE 74 (337)
Q Consensus 1 ~L~~~~~l~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~i~p~~~~~~l~~~~~~~f~------~~~ 74 (337)
||+|+|+||+++++...... .......+++++|++|+..|+.+. ..++|..|+..++.. .+.|. .++
T Consensus 17 ~L~~~~~f~~~~~~~~~~~~---~~~~~~~~~~~~l~~L~~~l~~~~---~~i~p~~~~~~l~~~-~~~f~~~~~~~~~~ 89 (305)
T cd02657 17 CLRSVPELRDALKNYNPARR---GANQSSDNLTNALRDLFDTMDKKQ---EPVPPIEFLQLLRMA-FPQFAEKQNQGGYA 89 (305)
T ss_pred HHhCCHHHHHHHHhcccccc---ccccchhHHHHHHHHHHHHHHhCC---CcCCcHHHHHHHHHH-CcCcccccCCCCcc
Confidence 68999999999988664321 122334689999999999999875 389999999999876 67884 459
Q ss_pred CCCHHHHHHHHHHHHHHHhccCCCCCCCcceeccCCeEeeeeecCCCcchhHhhhhhccccccC-ceeeeeecceeeecc
Q psy1343 75 QSDPIDFLSWFLNTLHRALNGTKKKDSSIVYKTFLGSMKVKTRKIPPVELEEKVRQRLLLTEEY-KETETESPFLYLTCD 153 (337)
Q Consensus 75 QqDa~Efl~~ll~~l~~~~~~~~~~~~~~i~~~F~g~~~~~~~~~~~~~~~~~~~~~~~C~~C~-~~s~~~e~f~~lsl~ 153 (337)
||||+||+.+|||.|++++... ....++|.++|+|++. +.++|..|+ ..+.+.|+|+.|+|+
T Consensus 90 QqDA~EFl~~lld~L~~~~~~~-~~~~~~i~~~F~g~~~----------------~~~~C~~C~~~~~~~~e~f~~Lsl~ 152 (305)
T cd02657 90 QQDAEECWSQLLSVLSQKLPGA-GSKGSFIDQLFGIELE----------------TKMKCTESPDEEEVSTESEYKLQCH 152 (305)
T ss_pred ccCHHHHHHHHHHHHHHHhccc-CCCCcHHHHhhceEEE----------------EEEEcCCCCCCCccccccceEEEee
Confidence 9999999999999999998642 2356789999999999 667899999 799999999999999
Q ss_pred CCCCCCccccccccCCCcccHHHHHhhhcccc----hhhhcccccceeEEEEeecCCCceEEEEeeeccCC--cccccCC
Q psy1343 154 LPPPPLFKDEVLENIIPQVNLYTILTKFNNES----EKEYKTYKENFLKRFEITSLPPYLILYVKRFTKNT--FFVEKNP 227 (337)
Q Consensus 154 ip~~~~~~~~~~~~~~~~~sl~~~L~~~~~~~----~~~c~~~~~~~~k~~~i~~lP~~Lii~l~Rf~~~~--~~~~K~~ 227 (337)
+|.... ..+|++||+.++.++ |..|+.. ..+.++..|.++|++|+|||+||.++. ....|+.
T Consensus 153 i~~~~~-----------~~~l~~~L~~~~~~~~~~~~~~~~~~-~~~~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~ 220 (305)
T cd02657 153 ISITTE-----------VNYLQDGLKKGLEEEIEKHSPTLGRD-AIYTKTSRISRLPKYLTVQFVRFFWKRDIQKKAKIL 220 (305)
T ss_pred cCCCcc-----------cccHHHHHHHhhhhhhhhcCcccCCC-ceEEEEEEeccCCcEEEEEEECCccccccCceeecC
Confidence 987531 237999999888765 4556655 777899999999999999999999764 3467999
Q ss_pred ceEeeCCCCCCCCCCCCchhhhhcchhhhhhhhccCCCcceeEeEEEEeecC-CCCCeEEEEEEeCCCCcEEEecCCccc
Q psy1343 228 TIVNFPVKNVDFGDILTPEVKAKYESTMYDLVKAKYESTMYDLVANIVHDGE-PSNGTYRVHLYHKGIGKWYEIQDLHVT 306 (337)
Q Consensus 228 ~~v~fp~~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avi~H~G~-~~~GHY~a~vk~~~~~~W~~~nD~~V~ 306 (337)
+.|.|| ..|||.+|+. ....|+|+|||+|.|+ +++|||+||+|...+++||.|||+.|+
T Consensus 221 ~~v~fP-~~Ldl~~~~~-------------------~~~~Y~L~~vI~H~G~~~~~GHY~~~~~~~~~~~W~~fdD~~V~ 280 (305)
T cd02657 221 RKVKFP-FELDLYELCT-------------------PSGYYELVAVITHQGRSADSGHYVAWVRRKNDGKWIKFDDDKVS 280 (305)
T ss_pred cEEECC-ceEecccccC-------------------CCCcEEEEEEEEecCCCCCCcEEEEEEEcCCCCeEEEEECCceE
Confidence 999999 5899999986 3468999999999996 799999999999655899999999999
Q ss_pred ccCcccccc-------CCcEEEEEE
Q psy1343 307 DILPQMITL-------TEAYIQIYE 324 (337)
Q Consensus 307 ~v~~~~v~~-------~~aYiLfY~ 324 (337)
++++++|.. ..||||||+
T Consensus 281 ~~~~~~v~~~~~~~~~~~aYiL~Y~ 305 (305)
T cd02657 281 EVTEEDILKLSGGGDWHIAYILLYK 305 (305)
T ss_pred EeCHHHHHhhcCCCCCceEEEEEEC
Confidence 999999974 699999996
No 8
>cd02658 Peptidase_C19B A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2e-52 Score=383.56 Aligned_cols=274 Identities=20% Similarity=0.217 Sum_probs=226.0
Q ss_pred CCCCChHHHHHhhccccccccCCCCCCCchHHHHHHHHHHHHHhCCCC------------CCCCCChHHHHHHHHHhccC
Q psy1343 1 ALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRN------------FKSHVSPHEMLQAVVLWSRK 68 (337)
Q Consensus 1 ~L~~~~~l~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~------------~~~~i~p~~~~~~l~~~~~~ 68 (337)
||+|+|+||++|+....... ........++.++|++|+..|++++. ...+++|..|+.+++.. .+
T Consensus 17 ~L~~~~~f~~~l~~~~~~~~--~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~l~~~-~~ 93 (311)
T cd02658 17 VLFSIPSFQWRYDDLENKFP--SDVVDPANDLNCQLIKLADGLLSGRYSKPASLKSENDPYQVGIKPSMFKALIGKG-HP 93 (311)
T ss_pred HHHCCHHHHHHHhhhccccC--CCcCCccccHHHHHHHHHHHhcCCCcCCCccccccccccccccCcHHHHHHHhcc-Ch
Confidence 78999999999987332111 11222346799999999999988642 24579999999999765 79
Q ss_pred CCCcCCCCCHHHHHHHHHHHHHHHhccCCCCCCCcceeccCCeEeeeeecCCCcchhHhhhhhccccccCceeeeeecce
Q psy1343 69 QFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDSSIVYKTFLGSMKVKTRKIPPVELEEKVRQRLLLTEEYKETETESPFL 148 (337)
Q Consensus 69 ~f~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~~~i~~~F~g~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~s~~~e~f~ 148 (337)
.|..+.|||||||+++|||.|++++.. ...+.+.++|+|.+. ++++|..|+..+.+.++|+
T Consensus 94 ~f~~~~QqDa~Efl~~ll~~l~~~~~~---~~~~~~~~~f~~~~~----------------~~i~C~~C~~~s~~~e~~~ 154 (311)
T cd02658 94 EFSTMRQQDALEFLLHLIDKLDRESFK---NLGLNPNDLFKFMIE----------------DRLECLSCKKVKYTSELSE 154 (311)
T ss_pred hhcccccccHHHHHHHHHHHHHHhhcc---cccCCchhheEEEee----------------EEEEcCCCCCEEEeeccee
Confidence 999999999999999999999998753 223457899999998 6678999999999999999
Q ss_pred eeeccCCCCCCccccccccCCCcccHHHHHhhhcccc-----hhhhcccccceeEEEEeecCCCceEEEEeeeccC-Ccc
Q psy1343 149 YLTCDLPPPPLFKDEVLENIIPQVNLYTILTKFNNES-----EKEYKTYKENFLKRFEITSLPPYLILYVKRFTKN-TFF 222 (337)
Q Consensus 149 ~lsl~ip~~~~~~~~~~~~~~~~~sl~~~L~~~~~~~-----~~~c~~~~~~~~k~~~i~~lP~~Lii~l~Rf~~~-~~~ 222 (337)
.|+|++|..............+..+|++||+.|+..+ |..|+.. +.+.++.+|.++|++|+|||+||.++ .+.
T Consensus 155 ~lsL~l~~~~~~~~~~~~~~~~~~sl~~~L~~~~~~e~i~~~C~~C~~~-~~a~k~~~i~~lP~vLii~LkRF~~~~~~~ 233 (311)
T cd02658 155 ILSLPVPKDEATEKEEGELVYEPVPLEDCLKAYFAPETIEDFCSTCKEK-TTATKTTGFKTFPDYLVINMKRFQLLENWV 233 (311)
T ss_pred EEeeecccccccccccccccCCCCCHHHHHHHHcCcccccccccCCCCc-ccEEEEEEeecCCceEEEEeEEEEecCCCc
Confidence 9999999765433222223345679999999998765 7778776 88999999999999999999999984 566
Q ss_pred cccCCceEeeCCCCCCCCCCCCchhhhhcchhhhhhhhccCCCcceeEeEEEEeecC-CCCCeEEEEEEeC--CCCcEEE
Q psy1343 223 VEKNPTIVNFPVKNVDFGDILTPEVKAKYESTMYDLVKAKYESTMYDLVANIVHDGE-PSNGTYRVHLYHK--GIGKWYE 299 (337)
Q Consensus 223 ~~K~~~~v~fp~~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avi~H~G~-~~~GHY~a~vk~~--~~~~W~~ 299 (337)
..|+...|.|| ..| ....|+|+|||+|.|+ .++|||+||+|.. .+++||+
T Consensus 234 ~~Ki~~~v~~p-~~l--------------------------~~~~Y~L~~vI~H~G~~~~~GHY~~~vk~~~~~~~~W~~ 286 (311)
T cd02658 234 PKKLDVPIDVP-EEL--------------------------GPGKYELIAFISHKGTSVHSGHYVAHIKKEIDGEGKWVL 286 (311)
T ss_pred eEeeccccccC-CcC--------------------------CCCcEEEEEEEEccCCCCCCcceEEEEeCCCCCCCCEEE
Confidence 78999999999 444 1357999999999997 7999999999985 3489999
Q ss_pred ecCCcccccCccccccCCcEEEEEE
Q psy1343 300 IQDLHVTDILPQMITLTEAYIQIYE 324 (337)
Q Consensus 300 ~nD~~V~~v~~~~v~~~~aYiLfY~ 324 (337)
|||+.|+++++.++...+||||||+
T Consensus 287 fnD~~V~~~~~~~~~~~~~YilfY~ 311 (311)
T cd02658 287 FNDEKVVASQDPPEMKKLGYIYFYQ 311 (311)
T ss_pred ecCceeEECCcccccCCcceEEEEC
Confidence 9999999999999999999999996
No 9
>cd02667 Peptidase_C19K A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.6e-51 Score=371.39 Aligned_cols=221 Identities=23% Similarity=0.395 Sum_probs=186.9
Q ss_pred ChHHHHHHHHHhccCCCCcCCCCCHHHHHHHHHHHHHHHhccCCCCCCCcceeccCCeEeeeeecCCCcchhHhhhhhcc
Q psy1343 54 SPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDSSIVYKTFLGSMKVKTRKIPPVELEEKVRQRLL 133 (337)
Q Consensus 54 ~p~~~~~~l~~~~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~~~i~~~F~g~~~~~~~~~~~~~~~~~~~~~~~ 133 (337)
+|..|+..++.. .+.|..++||||+||+.+|||.|+ +++.++|+|++. +.+.
T Consensus 31 ~P~~~~~~l~~~-~~~f~~~~QqDA~Efl~~lld~l~-----------~~i~~~F~G~~~----------------~~i~ 82 (279)
T cd02667 31 TPKELFSQVCRK-APQFKGYQQQDSHELLRYLLDGLR-----------TFIDSIFGGELT----------------STIM 82 (279)
T ss_pred CHHHHHHHHHHh-hHhhcCCchhhHHHHHHHHHHHHH-----------HhhhhhcceEEE----------------EEEE
Confidence 778888888765 789999999999999999999998 358899999999 6678
Q ss_pred ccccCceeeeeecceeeeccCCCCCCccccccccCCCcccHHHHHhhhcccch------hhhcccccceeEEEEeecCCC
Q psy1343 134 LTEEYKETETESPFLYLTCDLPPPPLFKDEVLENIIPQVNLYTILTKFNNESE------KEYKTYKENFLKRFEITSLPP 207 (337)
Q Consensus 134 C~~C~~~s~~~e~f~~lsl~ip~~~~~~~~~~~~~~~~~sl~~~L~~~~~~~~------~~c~~~~~~~~k~~~i~~lP~ 207 (337)
|..|+..+.+.|+|+.|+|+++.... ...+|++||+.|+.++. ..|..+ ..+.++..|.++|+
T Consensus 83 C~~C~~~s~~~E~f~~L~Lp~~~~~~----------~~~sL~~~L~~~~~~E~l~~~~~~~C~~C-~~a~k~~~i~~~P~ 151 (279)
T cd02667 83 CESCGTVSLVYEPFLDLSLPRSDEIK----------SECSIESCLKQFTEVEILEGNNKFACENC-TKAKKQYLISKLPP 151 (279)
T ss_pred cCCCCCEeCccccceEEecCCCcccC----------CCCCHHHHHHhhcCeeEecCCCcccCCcc-CceeeEeEhhhCCC
Confidence 99999999999999999999864321 24689999999987651 234333 33889999999999
Q ss_pred ceEEEEeeeccCCc-ccccCCceEeeCCCCCCCCCCCCchhhhhcchhhhhhhhccCCCcceeEeEEEEeecCCCCCeEE
Q psy1343 208 YLILYVKRFTKNTF-FVEKNPTIVNFPVKNVDFGDILTPEVKAKYESTMYDLVKAKYESTMYDLVANIVHDGEPSNGTYR 286 (337)
Q Consensus 208 ~Lii~l~Rf~~~~~-~~~K~~~~v~fp~~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avi~H~G~~~~GHY~ 286 (337)
+|+|||+||.++.. ...|++..|.|| +.|||++|+....... .......|+|+|||+|.|+.++|||+
T Consensus 152 ~Lii~LkRF~~~~~~~~~Ki~~~v~fP-~~Ldl~~~~~~~~~~~----------~~~~~~~Y~L~~vi~H~G~~~~GHY~ 220 (279)
T cd02667 152 VLVIHLKRFQQPRSANLRKVSRHVSFP-EILDLAPFCDPKCNSS----------EDKSSVLYRLYGVVEHSGTMRSGHYV 220 (279)
T ss_pred eEEEEEeccccCcccCceecCceEeCC-CccchhhccCcccccc----------ccCCCceEEEEEEEEEeCCCCCCEeE
Confidence 99999999997754 568999999999 6899999997632110 01156899999999999999999999
Q ss_pred EEEEeCC---------------------CCcEEEecCCcccccCccccccCCcEEEEEE
Q psy1343 287 VHLYHKG---------------------IGKWYEIQDLHVTDILPQMITLTEAYIQIYE 324 (337)
Q Consensus 287 a~vk~~~---------------------~~~W~~~nD~~V~~v~~~~v~~~~aYiLfY~ 324 (337)
||+|... +++||+|||+.|++++.++|...+||||||+
T Consensus 221 a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~dD~~V~~v~~~~v~~~~aYiLfYe 279 (279)
T cd02667 221 AYVKVRPPQQRLSDLTKSKPAADEAGPGSGQWYYISDSDVREVSLEEVLKSEAYLLFYE 279 (279)
T ss_pred EEEEcCccccccccccccccccccCCCCCCcEEEEECCccEECCHHHhccCCcEEEEeC
Confidence 9999853 6899999999999999999999999999996
No 10
>cd02661 Peptidase_C19E A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.2e-50 Score=370.51 Aligned_cols=267 Identities=22% Similarity=0.365 Sum_probs=228.6
Q ss_pred CCCCChHHHHHhhccccccccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHhccCCCCcCCCCCHHH
Q psy1343 1 ALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPID 80 (337)
Q Consensus 1 ~L~~~~~l~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~i~p~~~~~~l~~~~~~~f~~~~QqDa~E 80 (337)
||+|+|+||+++++........ ....++.++|+.++..++.++ ...++|..|..++... .+.|..+.||||+|
T Consensus 19 ~L~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~--~~~~~p~~~~~~l~~~-~~~f~~~~qqDa~E 91 (304)
T cd02661 19 CLTHTPPLANYLLSREHSKDCC----NEGFCMMCALEAHVERALASS--GPGSAPRIFSSNLKQI-SKHFRIGRQEDAHE 91 (304)
T ss_pred HhhCCHHHHHHHhcchhhhhcc----CCcchHHHHHHHHHHHHHhCC--CCccChHHHHHHHHHH-HHhhcCcchhhHHH
Confidence 6899999999998765443211 123589999999999988766 6789999999999775 78999999999999
Q ss_pred HHHHHHHHHHHHhccCC---------CCCCCcceeccCCeEeeeeecCCCcchhHhhhhhccccccCceeeeeecceeee
Q psy1343 81 FLSWFLNTLHRALNGTK---------KKDSSIVYKTFLGSMKVKTRKIPPVELEEKVRQRLLLTEEYKETETESPFLYLT 151 (337)
Q Consensus 81 fl~~ll~~l~~~~~~~~---------~~~~~~i~~~F~g~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~s~~~e~f~~ls 151 (337)
|+.+|||.|++++.... ....+++.++|+|++. +.+.|..|+..+.+.++|+.|+
T Consensus 92 fl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~F~g~~~----------------~~~~C~~C~~~s~~~e~~~~l~ 155 (304)
T cd02661 92 FLRYLLDAMQKACLDRFKKLKAVDPSSQETTLVQQIFGGYLR----------------SQVKCLNCKHVSNTYDPFLDLS 155 (304)
T ss_pred HHHHHHHHHHHHHhhhcccccccCccccCCChhhhcCCcEEe----------------eeEEeCCCCCCcCccccceeee
Confidence 99999999998864322 2345789999999999 6678999999999999999999
Q ss_pred ccCCCCCCccccccccCCCcccHHHHHhhhccc---------chhhhcccccceeEEEEeecCCCceEEEEeeeccCCcc
Q psy1343 152 CDLPPPPLFKDEVLENIIPQVNLYTILTKFNNE---------SEKEYKTYKENFLKRFEITSLPPYLILYVKRFTKNTFF 222 (337)
Q Consensus 152 l~ip~~~~~~~~~~~~~~~~~sl~~~L~~~~~~---------~~~~c~~~~~~~~k~~~i~~lP~~Lii~l~Rf~~~~~~ 222 (337)
|++|... +|+++|+.++.. .|+.|+.. ..+.++..|.++|++|+|||+||.+. .
T Consensus 156 l~i~~~~--------------~l~~~l~~~~~~e~~~~~~~~~C~~C~~~-~~~~~~~~i~~~P~iL~i~l~Rf~~~--~ 218 (304)
T cd02661 156 LDIKGAD--------------SLEDALEQFTKPEQLDGENKYKCERCKKK-VKASKQLTIHRAPNVLTIHLKRFSNF--R 218 (304)
T ss_pred eecCCCC--------------cHHHHHHHhcCceeeCCCCCeeCCCCCCc-cceEEEEEEecCCcEEEEEEeccccC--C
Confidence 9998652 799999988765 37777766 78889999999999999999999976 4
Q ss_pred cccCCceEeeCCCCCCCCCCCCchhhhhcchhhhhhhhccCCCcceeEeEEEEeecCC-CCCeEEEEEEeCCCCcEEEec
Q psy1343 223 VEKNPTIVNFPVKNVDFGDILTPEVKAKYESTMYDLVKAKYESTMYDLVANIVHDGEP-SNGTYRVHLYHKGIGKWYEIQ 301 (337)
Q Consensus 223 ~~K~~~~v~fp~~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avi~H~G~~-~~GHY~a~vk~~~~~~W~~~n 301 (337)
..|++..|.|| +.|||.+++..+.. ....|+|+|||+|.|+. ++|||+||+|.. +++||+||
T Consensus 219 ~~Ki~~~v~f~-~~L~l~~~~~~~~~---------------~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~~-~~~W~~~n 281 (304)
T cd02661 219 GGKINKQISFP-ETLDLSPYMSQPND---------------GPLKYKLYAVLVHSGFSPHSGHYYCYVKSS-NGKWYNMD 281 (304)
T ss_pred ccccCCeEecC-CeechhhccccCCC---------------CCceeeEEEEEEECCCCCCCcCCEEEEECC-CCCEEEEe
Confidence 57999999999 68999999875321 57899999999999995 999999999984 78999999
Q ss_pred CCcccccCccccccCCcEEEEEE
Q psy1343 302 DLHVTDILPQMITLTEAYIQIYE 324 (337)
Q Consensus 302 D~~V~~v~~~~v~~~~aYiLfY~ 324 (337)
|+.|++++.++|...+||||||.
T Consensus 282 D~~V~~v~~~~v~~~~aYil~Y~ 304 (304)
T cd02661 282 DSKVSPVSIETVLSQKAYILFYI 304 (304)
T ss_pred CCeeEECCHHHhcCCCcEEEEeC
Confidence 99999999999999999999993
No 11
>cd02664 Peptidase_C19H A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=8.6e-51 Score=374.47 Aligned_cols=267 Identities=21% Similarity=0.256 Sum_probs=213.5
Q ss_pred CCCCChHHHHHhhccccccccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCCCChHH-HHHHHHHhccCCCCcCCCCCHH
Q psy1343 1 ALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHE-MLQAVVLWSRKQFQFTEQSDPI 79 (337)
Q Consensus 1 ~L~~~~~l~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~i~p~~-~~~~l~~~~~~~f~~~~QqDa~ 79 (337)
||+++|+||++++....... ....++.++|+.++..|..+. ..++.|.. ++.+.. .+.|..+.|||||
T Consensus 17 ~L~~~~~fr~~ll~~~~~~~------~~~~~~~~~L~~lf~~l~~~~--~~~~~~~~~~l~~~~---~~~f~~~~QqDa~ 85 (327)
T cd02664 17 ALFMAKDFRRQVLSLNLPRL------GDSQSVMKKLQLLQAHLMHTQ--RRAEAPPDYFLEASR---PPWFTPGSQQDCS 85 (327)
T ss_pred HHHCcHHHHHHHHcCCcccc------CCcchHHHHHHHHHHHHhhcC--CcccCCHHHHHHHhc---ccccCCCCcCCHH
Confidence 68999999999988764311 112468889999998887654 45677766 666552 5789999999999
Q ss_pred HHHHHHHHHHHHHhccCCCCCCCcceeccCCeEeeeeecCCCcchhHhhhhhccccccCceeeeeecceeeeccCCCCCC
Q psy1343 80 DFLSWFLNTLHRALNGTKKKDSSIVYKTFLGSMKVKTRKIPPVELEEKVRQRLLLTEEYKETETESPFLYLTCDLPPPPL 159 (337)
Q Consensus 80 Efl~~ll~~l~~~~~~~~~~~~~~i~~~F~g~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~s~~~e~f~~lsl~ip~~~~ 159 (337)
||+.+||+.|+ ++|.++|+|++. +.+.|..|+..+.+.|+|..|+|++|
T Consensus 86 EFl~~lLd~l~-----------~~i~~~F~G~~~----------------~~i~C~~C~~~s~~~e~f~~l~L~i~---- 134 (327)
T cd02664 86 EYLRYLLDRLH-----------TLIEKMFGGKLS----------------TTIRCLNCNSTSARTERFRDLDLSFP---- 134 (327)
T ss_pred HHHHHHHHHHH-----------HHHHhhCcEEeE----------------eEEEcCCCCCEecccccceeeecCCC----
Confidence 99999999999 358899999999 66789999999999999999999997
Q ss_pred ccccccccCCCcccHHHHHhhhccc---------chhhhcccccceeEEEEeecCCCceEEEEeeeccCC--cccccCCc
Q psy1343 160 FKDEVLENIIPQVNLYTILTKFNNE---------SEKEYKTYKENFLKRFEITSLPPYLILYVKRFTKNT--FFVEKNPT 228 (337)
Q Consensus 160 ~~~~~~~~~~~~~sl~~~L~~~~~~---------~~~~c~~~~~~~~k~~~i~~lP~~Lii~l~Rf~~~~--~~~~K~~~ 228 (337)
+|++||+.|+.. .|+.|+.. +.+.++..|.++|+||+|||+||.++. +...|+..
T Consensus 135 -------------sl~~~l~~~~~~E~l~g~n~~~C~~C~~~-~~a~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~ 200 (327)
T cd02664 135 -------------SVQDLLNYFLSPEKLTGDNQYYCEKCASL-QDAEKEMKVTGAPEYLILTLLRFSYDQKTHVREKIMD 200 (327)
T ss_pred -------------CHHHHHHHhcCeeEccCCCceeCCccCCc-cceeEEEEcccCChhhEEEeeeeEEccccCcceecCc
Confidence 478899888754 37888776 889999999999999999999998654 45679999
Q ss_pred eEeeCCCCCCCCCCCCchhhhhcc----hhhhhhhhccCCCcceeEeEEEEeecC-CCCCeEEEEEEeCC----------
Q psy1343 229 IVNFPVKNVDFGDILTPEVKAKYE----STMYDLVKAKYESTMYDLVANIVHDGE-PSNGTYRVHLYHKG---------- 293 (337)
Q Consensus 229 ~v~fp~~~Ldl~~~~~~~~~~~~~----~~~~~~~~~~~~~~~Y~L~avi~H~G~-~~~GHY~a~vk~~~---------- 293 (337)
+|.|| ..|||..+.......... ....+..........|+|+|||+|.|. +++|||+||+|...
T Consensus 201 ~v~fp-~~ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~~Vi~H~G~~~~~GHY~a~~r~~~~~~~~~~~~~ 279 (327)
T cd02664 201 NVSIN-EVLSLPVRVESKSSESPLEKKEEESGDDGELVTRQVHYRLYAVVVHSGYSSESGHYFTYARDQTDADSTGQECP 279 (327)
T ss_pred eEecC-CEEecCccccccccccccccccccccccccccCCCceEEEEEEEEEccCCCCCcceEEEEecCCcccccccccc
Confidence 99999 589998887432111000 000001111225689999999999997 79999999999853
Q ss_pred ----------CCcEEEecCCcccccCcccccc-------CCcEEEEEE
Q psy1343 294 ----------IGKWYEIQDLHVTDILPQMITL-------TEAYIQIYE 324 (337)
Q Consensus 294 ----------~~~W~~~nD~~V~~v~~~~v~~-------~~aYiLfY~ 324 (337)
++.||+|||+.|++++.++|.+ .+||||||+
T Consensus 280 ~~~~~~~~~~~~~W~~fnD~~V~~~~~~~v~~~~~~~~~~~aYlLfY~ 327 (327)
T cd02664 280 EPKDAEENDESKNWYLFNDSRVTFSSFESVQNVTSRFPKDTPYILFYE 327 (327)
T ss_pred ccccccccCCCCCEEEEeCCceEECCHHHHHHhhCCCCCCCEEEEEeC
Confidence 3789999999999999999986 899999995
No 12
>cd02671 Peptidase_C19O A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.6e-49 Score=364.72 Aligned_cols=261 Identities=19% Similarity=0.222 Sum_probs=206.1
Q ss_pred CCCCChHHHHHhhccccccccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHhccCCCCcCCCCCHHH
Q psy1343 1 ALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPID 80 (337)
Q Consensus 1 ~L~~~~~l~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~i~p~~~~~~l~~~~~~~f~~~~QqDa~E 80 (337)
||+|+|+||+++..... ... . ..-.+.+..+++.++... ...++|..|+++++.. ++.|..+.||||||
T Consensus 42 ~L~~~p~fr~~l~~~~~------~~~-~-~~~~q~~~~~l~~~~~~~--~~~~~P~~~~~~l~~~-~~~f~~~~QQDA~E 110 (332)
T cd02671 42 VLYFCPGFKHGLKHLVS------LIS-S-VEQLQSSFLLNPEKYNDE--LANQAPRRLLNALREV-NPMYEGYLQHDAQE 110 (332)
T ss_pred HHHcChHHHHHHHhhhc------ccC-c-HHHHHHHHHHHHHHHhhc--ccccCHHHHHHHHHHh-ccccCCccccCHHH
Confidence 68999999998765431 100 0 111223334455666544 4466799999999875 79999999999999
Q ss_pred HHHHHHHHHHHHhccCCCCCCCcceeccCCeEeeeeecCCCcchhHhhhhhccccccCceeeeeecceeeeccCCCCCCc
Q psy1343 81 FLSWFLNTLHRALNGTKKKDSSIVYKTFLGSMKVKTRKIPPVELEEKVRQRLLLTEEYKETETESPFLYLTCDLPPPPLF 160 (337)
Q Consensus 81 fl~~ll~~l~~~~~~~~~~~~~~i~~~F~g~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~s~~~e~f~~lsl~ip~~~~~ 160 (337)
||.+|||.|+. ++.++|+|++. ++++|..|++.+.+.|+|++|+|++|.....
T Consensus 111 Fl~~LLd~L~~-----------~i~~~F~g~~~----------------~~~~C~~C~~~s~~~E~f~~lsL~i~~~~~~ 163 (332)
T cd02671 111 VLQCILGNIQE-----------LVEKDFQGQLV----------------LRTRCLECETFTERREDFQDISVPVQESELS 163 (332)
T ss_pred HHHHHHHHHHH-----------HHHhhhceEEE----------------EEEEeCCCCCeeceecccEEEEEEeCCCccc
Confidence 99999999985 47899999999 5678999999999999999999999976321
Q ss_pred cccc-----cccCCCcccHHHHHhhhcccc---------hhhhcccccceeEEEEeecCCCceEEEEeeeccCC------
Q psy1343 161 KDEV-----LENIIPQVNLYTILTKFNNES---------EKEYKTYKENFLKRFEITSLPPYLILYVKRFTKNT------ 220 (337)
Q Consensus 161 ~~~~-----~~~~~~~~sl~~~L~~~~~~~---------~~~c~~~~~~~~k~~~i~~lP~~Lii~l~Rf~~~~------ 220 (337)
.... .....+..+|++||+.|+.+| |+.|+.. +.+.++..|.++|++|+|||+||.+++
T Consensus 164 ~~~~~~~~~~~~~~~~~tL~~~L~~f~~~E~l~g~n~y~C~~C~~~-~~a~k~~~~~~~P~vL~i~LkRF~~~~~~~~~~ 242 (332)
T cd02671 164 KSEESSEISPDPKTEMKTLKWAISQFASVERIVGEDKYFCENCHHY-TEAERSLLFDKLPEVITIHLKCFAANGSEFDCY 242 (332)
T ss_pred ccccccccccccccccCCHHHHHHHhCCcceecCCCCeeCCCCCCc-eeEEEEEEEecCCCEEEEEeeeecccccccccc
Confidence 1100 011112369999999998664 7778776 889999999999999999999999764
Q ss_pred cccccCCceEeeCCCCCCCCCCCCchhhhhcchhhhhhhhccCCCcceeEeEEEEeecC-CCCCeEEEEEEeCCCCcEEE
Q psy1343 221 FFVEKNPTIVNFPVKNVDFGDILTPEVKAKYESTMYDLVKAKYESTMYDLVANIVHDGE-PSNGTYRVHLYHKGIGKWYE 299 (337)
Q Consensus 221 ~~~~K~~~~v~fp~~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avi~H~G~-~~~GHY~a~vk~~~~~~W~~ 299 (337)
....|+++.|.||+ .||+.++.... ....|+|+|||+|.|+ +++|||+|||| ||+
T Consensus 243 ~~~~Ki~~~v~fp~-~L~~~~~~~~~-----------------~~~~Y~L~~VI~H~G~~~~~GHY~a~vr------W~~ 298 (332)
T cd02671 243 GGLSKVNTPLLTPL-KLSLEEWSTKP-----------------KNDVYRLFAVVMHSGATISSGHYTAYVR------WLL 298 (332)
T ss_pred CCceecCccccCcc-ccccccccCCC-----------------CCCeEEEEEEEEEcCCCCCCCeEEEEEE------EEE
Confidence 24579999999995 79998775432 4679999999999997 69999999998 999
Q ss_pred ecCCcccccCccccc---------cCCcEEEEEE
Q psy1343 300 IQDLHVTDILPQMIT---------LTEAYIQIYE 324 (337)
Q Consensus 300 ~nD~~V~~v~~~~v~---------~~~aYiLfY~ 324 (337)
|||+.|++++++++. ..+||||||+
T Consensus 299 fdD~~V~~~~~~~~~~~~~~~~~~~~~aYiLfY~ 332 (332)
T cd02671 299 FDDSEVKVTEEKDFLEALSPNTSSTSTPYLLFYK 332 (332)
T ss_pred EcCcceEEccHHHHHhhcCCCCCCCCceEEEEEC
Confidence 999999999876664 3799999995
No 13
>cd02659 peptidase_C19C A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.3e-49 Score=366.91 Aligned_cols=281 Identities=23% Similarity=0.279 Sum_probs=223.4
Q ss_pred CCCCChHHHHHhhccccccccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHhccCCCCcCCCCCHHH
Q psy1343 1 ALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPID 80 (337)
Q Consensus 1 ~L~~~~~l~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~i~p~~~~~~l~~~~~~~f~~~~QqDa~E 80 (337)
||+++|+||++++...... ......++.++|+.|+..|+.+. ...+.|..+. .+.......|..+.||||+|
T Consensus 20 ~L~~~~~f~~~~l~~~~~~-----~~~~~~~~~~~l~~lf~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~QqDa~E 91 (334)
T cd02659 20 QLYMTPEFRNAVYSIPPTE-----DDDDNKSVPLALQRLFLFLQLSE--SPVKTTELTD-KTRSFGWDSLNTFEQHDVQE 91 (334)
T ss_pred HHhcCHHHHHHHHcCCCcc-----cCcccccHHHHHHHHHHHHHhCC--ccccCcchhh-eeccCCCCCCCcccchhHHH
Confidence 6899999999998862110 11123579999999999999876 4455665554 22222256788999999999
Q ss_pred HHHHHHHHHHHHhccCCCCCCCcceeccCCeEeeeeecCCCcchhHhhhhhccccccCceeeeeecceeeeccCCCCCCc
Q psy1343 81 FLSWFLNTLHRALNGTKKKDSSIVYKTFLGSMKVKTRKIPPVELEEKVRQRLLLTEEYKETETESPFLYLTCDLPPPPLF 160 (337)
Q Consensus 81 fl~~ll~~l~~~~~~~~~~~~~~i~~~F~g~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~s~~~e~f~~lsl~ip~~~~~ 160 (337)
|+.+||+.|++++.... ..+++.++|+|++. ..++|..|+..+...++|+.|+|++|..
T Consensus 92 fl~~ll~~l~~~~~~~~--~~~~i~~lF~g~~~----------------~~~~C~~C~~~s~~~e~f~~l~l~i~~~--- 150 (334)
T cd02659 92 FFRVLFDKLEEKLKGTG--QEGLIKNLFGGKLV----------------NYIICKECPHESEREEYFLDLQVAVKGK--- 150 (334)
T ss_pred HHHHHHHHHHHHhccCc--ccchhhhhCceEEE----------------eEEEecCCCceecccccceEEEEEcCCC---
Confidence 99999999999986432 34679999999999 5678999999999999999999999863
Q ss_pred cccccccCCCcccHHHHHhhhcccc---------hhhhcccccceeEEEEeecCCCceEEEEeeeccC--CcccccCCce
Q psy1343 161 KDEVLENIIPQVNLYTILTKFNNES---------EKEYKTYKENFLKRFEITSLPPYLILYVKRFTKN--TFFVEKNPTI 229 (337)
Q Consensus 161 ~~~~~~~~~~~~sl~~~L~~~~~~~---------~~~c~~~~~~~~k~~~i~~lP~~Lii~l~Rf~~~--~~~~~K~~~~ 229 (337)
.+|+++|+.|+..+ |+.|+.. ..+.++..|.++|++|+|||+||.++ .+...|++..
T Consensus 151 -----------~~l~~~l~~~~~~e~l~~~~~~~C~~C~~~-~~~~k~~~i~~lP~vLii~l~Rf~~~~~~~~~~K~~~~ 218 (334)
T cd02659 151 -----------KNLEESLDAYVQGETLEGDNKYFCEKCGKK-VDAEKGVCFKKLPPVLTLQLKRFEFDFETMMRIKINDR 218 (334)
T ss_pred -----------CCHHHHHHHhcCeeEecCCccEecCcCCCc-ccEEEEEEeecCCCEEEEEeeeeEEccccCcceeCCce
Confidence 27999999988653 7777766 78899999999999999999999865 3466799999
Q ss_pred EeeCCCCCCCCCCCCchhhhhcchhhhhhhhccCCCcceeEeEEEEeecCCCCCeEEEEEEeCCCCcEEEecCCcccccC
Q psy1343 230 VNFPVKNVDFGDILTPEVKAKYESTMYDLVKAKYESTMYDLVANIVHDGEPSNGTYRVHLYHKGIGKWYEIQDLHVTDIL 309 (337)
Q Consensus 230 v~fp~~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avi~H~G~~~~GHY~a~vk~~~~~~W~~~nD~~V~~v~ 309 (337)
|.|| ..|||.+++........ ............|+|+|||+|.|+.++|||+||+|...+++||+|||+.|++++
T Consensus 219 v~fp-~~Ldl~~~~~~~~~~~~----~~~~~~~~~~~~Y~L~~vI~H~G~~~~GHY~~~vk~~~~~~W~~~nD~~V~~i~ 293 (334)
T cd02659 219 FEFP-LELDMEPYTEKGLAKKE----GDSEKKDSESYIYELHGVLVHSGDAHGGHYYSYIKDRDDGKWYKFNDDVVTPFD 293 (334)
T ss_pred EeCC-ceecCcccccccccccc----ccccccCCCCeeEEEEEEEEecCCCCCCCeEEEEECCCCCceEEEeCcccEECC
Confidence 9999 68999999876432100 000001125789999999999999899999999998667999999999999999
Q ss_pred ccccc----------------------cCCcEEEEEEecC
Q psy1343 310 PQMIT----------------------LTEAYIQIYELRT 327 (337)
Q Consensus 310 ~~~v~----------------------~~~aYiLfY~r~~ 327 (337)
.++|. ...||||||+|++
T Consensus 294 ~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~ay~l~Y~~~~ 333 (334)
T cd02659 294 PNDAEEECFGGEETQKTYDSGPRAFKRTTNAYMLFYERKS 333 (334)
T ss_pred HHHHHHHcCCCccccccccccccccccccceEEEEEEEeC
Confidence 88885 3579999999975
No 14
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-46 Score=320.56 Aligned_cols=277 Identities=23% Similarity=0.262 Sum_probs=214.5
Q ss_pred CCCCChHHHHHhhccccccccCCC-CCCCch-HHHHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHhccCCCCcCCCCCH
Q psy1343 1 ALCHVTPLRDYFLREINYARVKRP-PGDSSF-LLVQRFGELMRKLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDP 78 (337)
Q Consensus 1 ~L~~~~~l~~~~l~~~~~~~~~~~-~~~~~~-~l~~~l~~l~~~l~~~~~~~~~i~p~~~~~~l~~~~~~~f~~~~QqDa 78 (337)
||+.+..|...|+...+..+.+.. +..+.+ -+...|.-|...+.... ...|+|..|+..++.. ++.|++..|||+
T Consensus 89 Cl~~~~dL~~M~~~~~ylq~INtd~prg~~g~~~~k~F~~l~~~~~~Hg--~~sis~~nF~~i~~~~-n~~fs~dmQqD~ 165 (415)
T COG5533 89 CLLSIGDLNTMLQGRFYLQNINTDFPRGKPGSNAFKQFIALYETPGCHG--PKSISPRNFIDILSGR-NKLFSGDMQQDS 165 (415)
T ss_pred HHHhhhHHHHHhhhhhhhhhccCCCCCCCcchhHHHHHHHHHhccccCC--CcccchHHHHHHHccc-cccccccchhhH
Confidence 788888998844444444444332 333334 45566666666665544 4579999999999775 999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCC---------------------------------CCCCcceeccCCeEeeeeecCCCcchh
Q psy1343 79 IDFLSWFLNTLHRALNGTKK---------------------------------KDSSIVYKTFLGSMKVKTRKIPPVELE 125 (337)
Q Consensus 79 ~Efl~~ll~~l~~~~~~~~~---------------------------------~~~~~i~~~F~g~~~~~~~~~~~~~~~ 125 (337)
|||+.++||.||++++..+. .+.++|.+.|.|+..
T Consensus 166 qEFl~fflD~LHedln~N~Srs~i~~l~de~e~~Reel~l~~~S~~EWn~~L~sn~S~v~~~f~gq~~------------ 233 (415)
T COG5533 166 QEFLIFFLDLLHEDLNGNKSRSPILELKDEFEEVREELPLSHFSHHEWNLHLRSNKSLVAKTFFGQDK------------ 233 (415)
T ss_pred HHHHHHHHHHHHhhhcCCcccccccccchHHHHHHhhcCcchhhhhhhHHhhccchHHHHHHHhhhhh------------
Confidence 99999999999999986432 345778889999988
Q ss_pred HhhhhhccccccCceeeeeecceeeeccCCCCCCccccccccCCCcccHHHHHhhhccc---------chhhhcccccce
Q psy1343 126 EKVRQRLLLTEEYKETETESPFLYLTCDLPPPPLFKDEVLENIIPQVNLYTILTKFNNE---------SEKEYKTYKENF 196 (337)
Q Consensus 126 ~~~~~~~~C~~C~~~s~~~e~f~~lsl~ip~~~~~~~~~~~~~~~~~sl~~~L~~~~~~---------~~~~c~~~~~~~ 196 (337)
++++|..|++.|++..+|..|.+|++... .+.|.||+++|.+. .|++|+.. ..+
T Consensus 234 ----srlqC~~C~~TStT~a~fs~l~vp~~~v~------------~~~l~eC~~~f~~~e~L~g~d~W~CpkC~~k-~ss 296 (415)
T COG5533 234 ----SRLQCEACNYTSTTIAMFSTLLVPPYEVV------------QLGLQECIDRFYEEEKLEGKDAWRCPKCGRK-ESS 296 (415)
T ss_pred ----hhhhhhhcCCceeEEeccceeeeccchhe------------eecHHHHHHHhhhHHhhcCcccccCchhccc-ccc
Confidence 78899999999999999999999998765 45799999999765 49999987 999
Q ss_pred eEEEEeecCCCceEEEEeeeccCCcccccCCceEe----eCCCCCCCCCCCCchhhhhcchhhhhhhhccCCCcceeEeE
Q psy1343 197 LKRFEITSLPPYLILYVKRFTKNTFFVEKNPTIVN----FPVKNVDFGDILTPEVKAKYESTMYDLVKAKYESTMYDLVA 272 (337)
Q Consensus 197 ~k~~~i~~lP~~Lii~l~Rf~~~~~~~~K~~~~v~----fp~~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~a 272 (337)
.|++.|.++|++|||||+||.-.-+...|++..-. +|.+.++-..|-. ..+..+.+|+|+|
T Consensus 297 ~K~~~I~~lP~~LII~i~RF~i~V~~~~kiD~p~gw~~~~~~e~~v~~~f~~---------------~~~~~P~~Y~L~g 361 (415)
T COG5533 297 RKRMEILVLPDVLIIHISRFHISVMGRKKIDTPQGWKNTASVEVNVTLLFNN---------------GIGYIPRKYSLLG 361 (415)
T ss_pred hheEEEEecCceEEEEeeeeeEEeecccccCCCcchhccCCceecccccccC---------------CCCCCccceeEEE
Confidence 99999999999999999999954455556655432 2221111111111 1122578999999
Q ss_pred EEEeecCCCCCeEEEEEEeCCCCcEEEecCCcccccCc-cccccCCcEEEEEEec
Q psy1343 273 NIVHDGEPSNGTYRVHLYHKGIGKWYEIQDLHVTDILP-QMITLTEAYIQIYELR 326 (337)
Q Consensus 273 vi~H~G~~~~GHY~a~vk~~~~~~W~~~nD~~V~~v~~-~~v~~~~aYiLfY~r~ 326 (337)
||||.|++++|||+++|+. ++.|+.|||+.|++++. .+.....+|||||+|.
T Consensus 362 v~Ch~G~L~gGHY~s~v~~--~~~W~~~dDs~vr~~~~~t~~~~pSsYilFY~r~ 414 (415)
T COG5533 362 VVCHNGTLNGGHYFSEVKR--SGTWNVYDDSQVRKGSRTTSGSHPSSYILFYTRS 414 (415)
T ss_pred EEeecceecCceeEEeeee--cCceEEechhheeeccceecccCCcceEEEEEec
Confidence 9999999999999999998 59999999999999986 3444578999999985
No 15
>cd02662 Peptidase_C19F A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.6e-45 Score=322.77 Aligned_cols=182 Identities=23% Similarity=0.327 Sum_probs=156.6
Q ss_pred CCCCHHHHHHHHHHHHHHHhccCCCCCCCcceeccCCeEeeeeecCCCcchhHhhhhhccccccCceee-eeecceeeec
Q psy1343 74 EQSDPIDFLSWFLNTLHRALNGTKKKDSSIVYKTFLGSMKVKTRKIPPVELEEKVRQRLLLTEEYKETE-TESPFLYLTC 152 (337)
Q Consensus 74 ~QqDa~Efl~~ll~~l~~~~~~~~~~~~~~i~~~F~g~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~s~-~~e~f~~lsl 152 (337)
.|||||||+..||+.|+. .+.++|.|++. +.++|..|+..+. +.|+|+.|+|
T Consensus 33 ~QqDa~EFl~~ll~~l~~-----------~i~~~F~g~~~----------------~~i~C~~C~~~s~~~~e~f~~LsL 85 (240)
T cd02662 33 EQQDAHELFQVLLETLEQ-----------LLKFPFDGLLA----------------SRIVCLQCGESSKVRYESFTMLSL 85 (240)
T ss_pred hhcCHHHHHHHHHHHHHH-----------hccCccccEEE----------------EEEEeCCCCCccCcceeeeeeeEe
Confidence 899999999999999993 37789999999 6778999999866 5999999999
Q ss_pred cCCCCCCccccccccCCCcccHHHHHhhhcccchh---hhcccccceeEEEEeecCCCceEEEEeeeccCC-cccccCCc
Q psy1343 153 DLPPPPLFKDEVLENIIPQVNLYTILTKFNNESEK---EYKTYKENFLKRFEITSLPPYLILYVKRFTKNT-FFVEKNPT 228 (337)
Q Consensus 153 ~ip~~~~~~~~~~~~~~~~~sl~~~L~~~~~~~~~---~c~~~~~~~~k~~~i~~lP~~Lii~l~Rf~~~~-~~~~K~~~ 228 (337)
++|.... .+..+|++||+.|+.++.. .|.. + +..|.++|++|+|||+||.++. +...|++.
T Consensus 86 ~ip~~~~---------~~~~sl~~~L~~~~~~E~l~~~~C~~--C----~~~i~~lP~vLii~LkRF~~~~~~~~~K~~~ 150 (240)
T cd02662 86 PVPNQSS---------GSGTTLEHCLDDFLSTEIIDDYKCDR--C----QTVIVRLPQILCIHLSRSVFDGRGTSTKNSC 150 (240)
T ss_pred cccccCC---------CCCCCHHHHHHHhcCcccccCcCCCC--C----eEEeecCCcEEEEEEEEEEEcCCCceeeecc
Confidence 9997642 1245899999999987632 2221 1 6779999999999999999876 77889999
Q ss_pred eEeeCCCCCCCCCCCCchhhhhcchhhhhhhhccCCCcceeEeEEEEeecCCCCCeEEEEEEeC----------------
Q psy1343 229 IVNFPVKNVDFGDILTPEVKAKYESTMYDLVKAKYESTMYDLVANIVHDGEPSNGTYRVHLYHK---------------- 292 (337)
Q Consensus 229 ~v~fp~~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avi~H~G~~~~GHY~a~vk~~---------------- 292 (337)
.|.|| ..| ....|+|+|||+|.|+.++|||+||+|.+
T Consensus 151 ~v~fp-~~l--------------------------~~~~Y~L~avi~H~G~~~~GHY~~~~k~~~~~~~~~~~~~~~~~~ 203 (240)
T cd02662 151 KVSFP-ERL--------------------------PKVLYRLRAVVVHYGSHSSGHYVCYRRKPLFSKDKEPGSFVRMRE 203 (240)
T ss_pred EEECC-Ccc--------------------------CCceEEEEEEEEEeccCCCceEEEEEeCCCccccccccccccccc
Confidence 99999 455 14689999999999999999999999986
Q ss_pred ----CCCcEEEecCCcccccCcccc-ccCCcEEEEEE
Q psy1343 293 ----GIGKWYEIQDLHVTDILPQMI-TLTEAYIQIYE 324 (337)
Q Consensus 293 ----~~~~W~~~nD~~V~~v~~~~v-~~~~aYiLfY~ 324 (337)
..++||+|||+.|+++++++| .+.+||||||+
T Consensus 204 ~~~~~~~~W~~fnD~~V~~v~~~~v~~~~~aY~LfYe 240 (240)
T cd02662 204 GPSSTSHPWWRISDTTVKEVSESEVLEQKSAYMLFYE 240 (240)
T ss_pred ccCccCCCEEEEechheEEeCHHHHhhCCCEEEEEeC
Confidence 348999999999999999999 89999999996
No 16
>cd02673 Peptidase_C19Q A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=6.2e-45 Score=320.04 Aligned_cols=215 Identities=16% Similarity=0.199 Sum_probs=169.1
Q ss_pred ChHHHHHHHHHhccCCCCcCCCCCHHHHHHHHHHHHHHHhccCCCC--------CCCcceeccCCeEeeeeecCCCcchh
Q psy1343 54 SPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKK--------DSSIVYKTFLGSMKVKTRKIPPVELE 125 (337)
Q Consensus 54 ~p~~~~~~l~~~~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~~~~--------~~~~i~~~F~g~~~~~~~~~~~~~~~ 125 (337)
+....+..|++. .+.|.+++||||||||++|||.|++++...... ......++|+|++.
T Consensus 13 ~~~~~~~~i~~~-~~~F~~~~QQDAhEFL~~LLd~l~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~l~------------ 79 (245)
T cd02673 13 STMQALSSIGKI-NTEFDNDDQQDAHEFLLTLLEAIDDIMQVNRTNVPPSNIEIKRLNPLEAFKYTIE------------ 79 (245)
T ss_pred hHHHHHHHHhhh-hhhcCCCchhhHHHHHHHHHHHHHHHHHhhcccCCCCcccccccCHhHheeeEEE------------
Confidence 344555566554 899999999999999999999999876432110 11123478999998
Q ss_pred HhhhhhccccccCceeeeeecceeeeccCCCCCCccccccccCCCcccHHHHHhhhccc-----chhhhcccccceeEEE
Q psy1343 126 EKVRQRLLLTEEYKETETESPFLYLTCDLPPPPLFKDEVLENIIPQVNLYTILTKFNNE-----SEKEYKTYKENFLKRF 200 (337)
Q Consensus 126 ~~~~~~~~C~~C~~~s~~~e~f~~lsl~ip~~~~~~~~~~~~~~~~~sl~~~L~~~~~~-----~~~~c~~~~~~~~k~~ 200 (337)
+.++|..|++.+.+.|+|++|+|++|... ..++++|++.|..+ .|+.|+. ..+.++.
T Consensus 80 ----s~i~C~~C~~~s~~~e~~~~L~L~i~~~~------------~~~le~l~~~~~~~~~~e~~C~~C~~--~~a~k~~ 141 (245)
T cd02673 80 ----SSYVCIGCSFEENVSDVGNFLDVSMIDNK------------LDIDELLISNFKTWSPIEKDCSSCKC--ESAISSE 141 (245)
T ss_pred ----eEEEecCCCCeeeeccccceeccccccCC------------cchHHHHHHHhhcccccCccCCCCCC--ccceeec
Confidence 67789999999999999999999998742 12577888777655 3888875 4677888
Q ss_pred EeecCCCceEEEEeeeccCCcccccCCceEeeCCCCCCCCCCCCchhhhhcchhhhhhhhccCCCcceeEeEEEEeecC-
Q psy1343 201 EITSLPPYLILYVKRFTKNTFFVEKNPTIVNFPVKNVDFGDILTPEVKAKYESTMYDLVKAKYESTMYDLVANIVHDGE- 279 (337)
Q Consensus 201 ~i~~lP~~Lii~l~Rf~~~~~~~~K~~~~v~fp~~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avi~H~G~- 279 (337)
.|.++|++|+|||+||.+.. +....+..+ .+++.+++. ....|+|+|||+|.|+
T Consensus 142 ~i~~~P~vL~i~lkRf~~~~----~~~~~~~~~--~~~~~~~~~-------------------~~~~Y~L~~VV~H~G~~ 196 (245)
T cd02673 142 RIMTFPECLSINLKRYKLRI----ATSDYLKKN--EEIMKKYCG-------------------TDAKYSLVAVICHLGES 196 (245)
T ss_pred hhhhCChhhEEeeEeeeecc----ccccccccc--ccccccccC-------------------CCceEEEEEEEEECCCC
Confidence 89999999999999997433 222233322 456666654 3457999999999997
Q ss_pred CCCCeEEEEEEeCC-CCcEEEecCCcccccCccccc---cCCcEEEEEE
Q psy1343 280 PSNGTYRVHLYHKG-IGKWYEIQDLHVTDILPQMIT---LTEAYIQIYE 324 (337)
Q Consensus 280 ~~~GHY~a~vk~~~-~~~W~~~nD~~V~~v~~~~v~---~~~aYiLfY~ 324 (337)
+++|||+||+|... +++||+|||+.|+++++++|. ...||||||+
T Consensus 197 ~~~GHY~a~vk~~~~~~~Wy~fnD~~V~~v~~~~v~~~~~~~aYiLFY~ 245 (245)
T cd02673 197 PYDGHYIAYTKELYNGSSWLYCSDDEIRPVSKNDVSTNARSSGYLIFYD 245 (245)
T ss_pred CCCceEEEEEEcCCCCCeEEEeeCceeeEcCHHHHhhccCCceEEEEEC
Confidence 79999999999865 689999999999999999998 5899999996
No 17
>KOG1868|consensus
Probab=100.00 E-value=2.8e-45 Score=353.28 Aligned_cols=288 Identities=25% Similarity=0.347 Sum_probs=239.9
Q ss_pred CCCCChHHHHHhhccccccccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHhccCCCCcCCCCCHHH
Q psy1343 1 ALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPID 80 (337)
Q Consensus 1 ~L~~~~~l~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~i~p~~~~~~l~~~~~~~f~~~~QqDa~E 80 (337)
||+.++.||+.||...+...++.........+..++..++..+|.+.. ...+.|..|+..+.+. .+.|.+..|||+||
T Consensus 319 Cl~~t~~lr~~~L~~~~~~~i~~~~~~~~~~l~~~~~~~l~~~~~~~~-~~s~~P~~f~~~~~~y-~~~~~~~~Qqd~qE 396 (653)
T KOG1868|consen 319 CLFSTGELRDNFLSIKLPQFINLDLFFGAEELESACAKLLQKLWHGHG-QFSVLPRRFIRVLKRY-SPNFSGYSQQDAQE 396 (653)
T ss_pred HHhhccccchhhhhHHHHHHcccCCcccchhHHHHHHHhhhhhccCCC-ceecCcHHHHHHHhhc-ccccccccccchHH
Confidence 899999999999998888777633333346789999999999887753 5679999999999664 89999999999999
Q ss_pred HHHHHHHHHHHHhccCCCC---------------------------------CCCcceeccCCeEeeeeecCCCcchhHh
Q psy1343 81 FLSWFLNTLHRALNGTKKK---------------------------------DSSIVYKTFLGSMKVKTRKIPPVELEEK 127 (337)
Q Consensus 81 fl~~ll~~l~~~~~~~~~~---------------------------------~~~~i~~~F~g~~~~~~~~~~~~~~~~~ 127 (337)
|+.++++.||++++...++ ..+.|.++|.|++.
T Consensus 397 fl~~lld~Lhe~ln~~~~~~~~~p~~~~~~~~~~~~~~s~~s~~~w~~~~~~~d~~i~~lf~gQ~k-------------- 462 (653)
T KOG1868|consen 397 FLIFLLDRLHEELNENTRPLKLSPLMGSYLLSELELSDSKKSLAEWLRYLEEEDSKIGDLFVGQLK-------------- 462 (653)
T ss_pred HHHHHHHhhhHhhhccCCCCccCccccccccccccccccchhHHHHHhhccccchHHHHHHHHHHH--------------
Confidence 9999999999999864320 12236677777777
Q ss_pred hhhhccccccCceeeeeecceeeeccCCCCCCccccccccCCCcccHHHHHhhhcccc---------hhhhccccccee-
Q psy1343 128 VRQRLLLTEEYKETETESPFLYLTCDLPPPPLFKDEVLENIIPQVNLYTILTKFNNES---------EKEYKTYKENFL- 197 (337)
Q Consensus 128 ~~~~~~C~~C~~~s~~~e~f~~lsl~ip~~~~~~~~~~~~~~~~~sl~~~L~~~~~~~---------~~~c~~~~~~~~- 197 (337)
+.++|..||..+.++++|.+|+|+||....... +++|++|+..|++.+ |+.|+.. ....
T Consensus 463 --s~Lkc~~cg~~s~t~~~f~~lslpIp~~~~~~~--------~~~L~~C~~~ft~~ekle~~~~w~Cp~c~~~-~~~~~ 531 (653)
T KOG1868|consen 463 --SYLKCQACGYTSTTFETFTDLSLPIPKKGFAGG--------KVSLEDCLSLFTKEEKLEGDEAWLCPRCKHK-ESSKT 531 (653)
T ss_pred --hheehhhcCCcceeeecceeeEEeccccccccc--------ccchHhhhccccchhhcccccccCCccccCc-ccccc
Confidence 788999999999999999999999997643221 468999999998654 8888876 5553
Q ss_pred -EEEEeecCCCceEEEEeeeccCCcccccCCceEeeCCCCCCCCCCCCchhhhhcchhhhhhhhccCCCcceeEeEEEEe
Q psy1343 198 -KRFEITSLPPYLILYVKRFTKNTFFVEKNPTIVNFPVKNVDFGDILTPEVKAKYESTMYDLVKAKYESTMYDLVANIVH 276 (337)
Q Consensus 198 -k~~~i~~lP~~Lii~l~Rf~~~~~~~~K~~~~v~fp~~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avi~H 276 (337)
|+..|.+||++|+|||+||.....+..|....|+||+...++.++...... ....|+|+||++|
T Consensus 532 lK~~~i~~lp~iLiihL~Rf~~~~~~~~k~~~~v~~~~~~~~~~~~~~~~~~---------------~~~~Y~L~aVv~H 596 (653)
T KOG1868|consen 532 LKKLTILRLPKILIIHLKRFSSDGNSFNKLSTGVDFPLREADLSPRFAEKGN---------------NPKSYRLYAVVNH 596 (653)
T ss_pred cceeeeecCCHHHHHHHHHhccCcccccccceeeccchHhhhhchhccccCC---------------CccceeeEEEEec
Confidence 999999999999999999998877778999999999766777765443322 4456999999999
Q ss_pred ecCCCCCeEEEEEEeCCCCcEEEecCCcccccCccccccCCcEEEEEEecCCCC
Q psy1343 277 DGEPSNGTYRVHLYHKGIGKWYEIQDLHVTDILPQMITLTEAYIQIYELRTTPS 330 (337)
Q Consensus 277 ~G~~~~GHY~a~vk~~~~~~W~~~nD~~V~~v~~~~v~~~~aYiLfY~r~~~~~ 330 (337)
.|++++|||+|||++...+.|+.|||+.|+++++.++....||||||+|....+
T Consensus 597 ~Gtl~sGHYta~~~~~~~~~W~~fdDs~Vs~~~~~~~~~s~aYIlFY~~~~~~~ 650 (653)
T KOG1868|consen 597 SGTLNSGHYTAYVYKNEKQRWFTFDDSEVSPISETDVGSSSAYILFYERLGIFE 650 (653)
T ss_pred cCcccCCceEEEEeecCCCceEEecCeeeeccccccccCCCceEEEeecCCccc
Confidence 999999999999998767899999999999999999999999999999988654
No 18
>cd02674 Peptidase_C19R A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.8e-43 Score=309.38 Aligned_cols=201 Identities=30% Similarity=0.453 Sum_probs=176.8
Q ss_pred CCCCHHHHHHHHHHHHHHHhccCCCCCCCcceeccCCeEeeeeecCCCcchhHhhhhhccccccCceeeeeecceeeecc
Q psy1343 74 EQSDPIDFLSWFLNTLHRALNGTKKKDSSIVYKTFLGSMKVKTRKIPPVELEEKVRQRLLLTEEYKETETESPFLYLTCD 153 (337)
Q Consensus 74 ~QqDa~Efl~~ll~~l~~~~~~~~~~~~~~i~~~F~g~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~s~~~e~f~~lsl~ 153 (337)
.||||+||+.+||+.|+ +.+.++|+|++. ..++|..|+..+...|+|+.|+|+
T Consensus 21 ~QqDa~Ef~~~ll~~l~-----------~~i~~~F~~~~~----------------~~~~C~~C~~~~~~~e~~~~l~l~ 73 (230)
T cd02674 21 DQQDAQEFLLFLLDGLH-----------SIIVDLFQGQLK----------------SRLTCLTCGKTSTTFEPFTYLSLP 73 (230)
T ss_pred hhhhHHHHHHHHHHHHh-----------hhHHheeCCEEe----------------CcEEcCCCcCCcceecceeEEEEe
Confidence 79999999999999999 358899999999 677899999999999999999999
Q ss_pred CCCCCCccccccccCCCcccHHHHHhhhcccc---------hhhhcccccceeEEEEeecCCCceEEEEeeeccCCcccc
Q psy1343 154 LPPPPLFKDEVLENIIPQVNLYTILTKFNNES---------EKEYKTYKENFLKRFEITSLPPYLILYVKRFTKNTFFVE 224 (337)
Q Consensus 154 ip~~~~~~~~~~~~~~~~~sl~~~L~~~~~~~---------~~~c~~~~~~~~k~~~i~~lP~~Lii~l~Rf~~~~~~~~ 224 (337)
+|..... .+..+|+++|+.++..+ |++|+.. +.+.++..|.++|++|+|||+||.+..+...
T Consensus 74 ip~~~~~--------~~~~sl~~~L~~~~~~e~~~~~~~~~C~~C~~~-~~~~~~~~i~~lP~iLii~l~R~~~~~~~~~ 144 (230)
T cd02674 74 IPSGSGD--------APKVTLEDCLRLFTKEETLDGDNAWKCPKCKKK-RKATKKLTISRLPKVLIIHLKRFSFSRGSTR 144 (230)
T ss_pred cccccCC--------CCCCCHHHHHHHhcCccccCCCCceeCCCCCCc-cceEEEEEEecCChhhEeEhhheecCCCCcc
Confidence 9976421 23469999999987653 7888877 8899999999999999999999998888888
Q ss_pred cCCceEeeCCCCCCCCCCCCchhhhhcchhhhhhhhccCCCcceeEeEEEEeecCCCCCeEEEEEEeCCCCcEEEecCCc
Q psy1343 225 KNPTIVNFPVKNVDFGDILTPEVKAKYESTMYDLVKAKYESTMYDLVANIVHDGEPSNGTYRVHLYHKGIGKWYEIQDLH 304 (337)
Q Consensus 225 K~~~~v~fp~~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avi~H~G~~~~GHY~a~vk~~~~~~W~~~nD~~ 304 (337)
|++..|.||.+.||+++|+.... . ....+|+|+|||+|.|+.++|||+||+|...+++||+|||+.
T Consensus 145 K~~~~v~~~~~~l~l~~~~~~~~--~------------~~~~~Y~L~~vI~H~G~~~~GHY~~~~~~~~~~~W~~fnD~~ 210 (230)
T cd02674 145 KLTTPVTFPLNDLDLTPYVDTRS--F------------TGPFKYDLYAVVNHYGSLNGGHYTAYCKNNETNDWYKFDDSR 210 (230)
T ss_pred cCCceEeccccccccccccCccc--C------------CCCceEEEEEEEEeeCCCCCcEEEEEEECCCCCceEEEcCCe
Confidence 99999999976799998863211 1 157899999999999999999999999996559999999999
Q ss_pred ccccCccccccCCcEEEEEE
Q psy1343 305 VTDILPQMITLTEAYIQIYE 324 (337)
Q Consensus 305 V~~v~~~~v~~~~aYiLfY~ 324 (337)
|++++.+++....||||||+
T Consensus 211 V~~i~~~~~~~~~~YlL~Y~ 230 (230)
T cd02674 211 VTKVSESSVVSSSAYILFYE 230 (230)
T ss_pred EEEcCHHHccCCCceEEEeC
Confidence 99999999999999999996
No 19
>KOG0944|consensus
Probab=100.00 E-value=8.8e-43 Score=325.74 Aligned_cols=290 Identities=18% Similarity=0.241 Sum_probs=236.3
Q ss_pred CCCCChHHHHHhhccccccccCCCCCCCchHHHHHHHHHHHHHhCCCCCC--------CCCChHHHHHHHHHhccCCCCc
Q psy1343 1 ALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFK--------SHVSPHEMLQAVVLWSRKQFQF 72 (337)
Q Consensus 1 ~L~~~~~l~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~--------~~i~p~~~~~~l~~~~~~~f~~ 72 (337)
+|+++|.|...++.... -.+..+.....+|-|+|++|.+.|.++...+ ..|+|.+|+..+++. .|.|+.
T Consensus 325 ~Lf~i~~fq~~~~~~~~--~f~~~~~~P~ndf~cQ~~Kl~~gm~sgkys~p~~~~~~qngIsP~mFK~~igkn-HpeFst 401 (763)
T KOG0944|consen 325 SLFSIPSFQRRYLEQER--IFNCYPKDPTNDFNCQLAKLLHGMLSGKYSKPLMDPSNQNGISPLMFKALIGKN-HPEFST 401 (763)
T ss_pred HheecccHHHhhccccc--eeecCCCCcchhHHHHHHHHHHHhhcCcccCccCCccccCCcCHHHHHHHHcCC-Cccccc
Confidence 47899999998877621 1122233334689999999999999987544 379999999999886 999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhccCCCCCCCcceeccCCeEeeeeecCCCcchhHhhhhhccccccCceeeeeecceeeec
Q psy1343 73 TEQSDPIDFLSWFLNTLHRALNGTKKKDSSIVYKTFLGSMKVKTRKIPPVELEEKVRQRLLLTEEYKETETESPFLYLTC 152 (337)
Q Consensus 73 ~~QqDa~Efl~~ll~~l~~~~~~~~~~~~~~i~~~F~g~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~s~~~e~f~~lsl 152 (337)
++||||+|||++||+.|.+-... ....+.++|...+. .++.|..|++++++.++-+.+.|
T Consensus 402 ~~QQDA~EFllfLl~ki~~n~rs----~~~nptd~frF~ve----------------~Rv~C~~c~kVrYs~~~~~~i~l 461 (763)
T KOG0944|consen 402 NRQQDAQEFLLFLLEKIRENSRS----SLPNPTDLFRFEVE----------------DRVSCLGCRKVRYSYESEYLIQL 461 (763)
T ss_pred hhhhhHHHHHHHHHHHHhhcccc----cCCCHHHHHHhhhh----------------hhhhhhccccccccchhheeeEe
Confidence 99999999999999999875421 11457899999988 88999999999999999999999
Q ss_pred cCCCCCCccccccccCCCcccHHHHHhhhcccc-----hhhhcccccceeEEEEeecCCCceEEEEeeeccCCcccccCC
Q psy1343 153 DLPPPPLFKDEVLENIIPQVNLYTILTKFNNES-----EKEYKTYKENFLKRFEITSLPPYLILYVKRFTKNTFFVEKNP 227 (337)
Q Consensus 153 ~ip~~~~~~~~~~~~~~~~~sl~~~L~~~~~~~-----~~~c~~~~~~~~k~~~i~~lP~~Lii~l~Rf~~~~~~~~K~~ 227 (337)
+||... .....+++..||+.|+.+. |..|+.+ ..+++...|.++|+|||||++||++.+|..+|+.
T Consensus 462 pv~~~~--------~v~~~v~~~~cleaff~pq~~df~s~ac~~K-~~a~kt~~~ksfP~yLiiqv~rf~~~dw~pkKld 532 (763)
T KOG0944|consen 462 PVPMTN--------EVREKVPISACLEAFFEPQVDDFWSTACGEK-KGATKTTRFKSFPDYLIIQVGRFTLQDWVPKKLD 532 (763)
T ss_pred eccccc--------cccccCCHHHHHHHhcCCcchhhhhHhhcCc-cccccccccccCCceEEEEeeEEEecCceeeeec
Confidence 998622 1334679999999999982 6778776 8999999999999999999999999999999999
Q ss_pred ceEeeCCCCCCCCCCCCchhhhhcchhhhhh-------------------------------------------------
Q psy1343 228 TIVNFPVKNVDFGDILTPEVKAKYESTMYDL------------------------------------------------- 258 (337)
Q Consensus 228 ~~v~fp~~~Ldl~~~~~~~~~~~~~~~~~~~------------------------------------------------- 258 (337)
..|+.| +.||++.|...+.++..+..+.+.
T Consensus 533 ~~iemp-e~ldls~~rs~g~~p~ee~lpde~~~~~~~~~d~s~i~qL~~MGFp~eac~rAly~tgN~~aEaA~NWl~~HM 611 (763)
T KOG0944|consen 533 VSIEMP-EELDLSSYRSKGLQPGEEALPDEAPETSEFAADRSVISQLVEMGFPEEACRRALYYTGNSGAEAASNWLMEHM 611 (763)
T ss_pred cceecc-hhhchhhhhhcCCCCcccccCCcCcccCccchhHHHHHHHHHcCCCHHHHHHHHhhhcCccHHHHHHHHHHhc
Confidence 999999 899999998776322221111000
Q ss_pred --------------------------------------------------------------------------------
Q psy1343 259 -------------------------------------------------------------------------------- 258 (337)
Q Consensus 259 -------------------------------------------------------------------------------- 258 (337)
T Consensus 612 dDpd~~~p~vvp~~~~~a~~~~~~e~~v~si~smGf~~~qa~~aL~~~n~nveravDWif~h~d~~~ed~~~~~s~~~~~ 691 (763)
T KOG0944|consen 612 DDPDIDDPFVVPGNSPKADAREVDEESVASIVSMGFSRNQAIKALKATNNNVERAVDWIFSHMDIPVEDAAEGESSSAIE 691 (763)
T ss_pred cCcccCCceecCCCCCccccCCCChhHheeeeeecCcHHHHHHHHHhcCccHHHHHHHHHhcccccccccCcCCCCCcch
Confidence
Q ss_pred ------hhccCCCcceeEeEEEEeecC-CCCCeEEEEEEeCCCCcEEEecCCcccccCccccccCCcEEEEEEecC
Q psy1343 259 ------VKAKYESTMYDLVANIVHDGE-PSNGTYRVHLYHKGIGKWYEIQDLHVTDILPQMITLTEAYIQIYELRT 327 (337)
Q Consensus 259 ------~~~~~~~~~Y~L~avi~H~G~-~~~GHY~a~vk~~~~~~W~~~nD~~V~~v~~~~v~~~~aYiLfY~r~~ 327 (337)
....+.+.+|+|+|+|+|.|+ +.+|||||++|+ .|+|..|||++|- ...+-.+..+||+||+|..
T Consensus 692 ~~~~~~~~~~dg~~~Y~L~a~IsHmGts~~sGHYV~hirK--egkWVlfNDeKv~--~S~~ppK~lgYvY~y~R~~ 763 (763)
T KOG0944|consen 692 SESTPSGTGKDGPGKYALFAFISHMGTSAHSGHYVCHIRK--EGKWVLFNDEKVA--ASQEPPKDLGYVYLYTRIA 763 (763)
T ss_pred hhcCCcccCCCCCcceeEEEEEecCCCCCCCcceEEEEee--cCcEEEEcchhhh--hccCChhhcceEEEEEecC
Confidence 124667899999999999998 699999999999 4999999999997 4444557999999999963
No 20
>cd02665 Peptidase_C19I A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.6e-43 Score=305.46 Aligned_cols=191 Identities=24% Similarity=0.290 Sum_probs=159.6
Q ss_pred CCCCHHHHHHHHHHHHHHHhccCCC------CCCCcceeccCCeEeeeeecCCCcchhHhhhhhccccccCceeeeeecc
Q psy1343 74 EQSDPIDFLSWFLNTLHRALNGTKK------KDSSIVYKTFLGSMKVKTRKIPPVELEEKVRQRLLLTEEYKETETESPF 147 (337)
Q Consensus 74 ~QqDa~Efl~~ll~~l~~~~~~~~~------~~~~~i~~~F~g~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~s~~~e~f 147 (337)
.|||||||++.|||.|++++..... +..++|.++|+|++..+ ..| |+..+.+.|+|
T Consensus 21 ~QQDa~Ef~~~Lld~Le~~l~~~~~~~~~~~~~~~~i~~lF~G~~~~~----------------~~~--~~~~s~~~E~F 82 (228)
T cd02665 21 QQQDVSEFTHLLLDWLEDAFQAAAEAISPGEKSKNPMVQLFYGTFLTE----------------GVL--EGKPFCNCETF 82 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccccccccccchHhhceEEEEEEE----------------EEE--CCCcccccCcc
Confidence 7999999999999999999875431 34567999999999842 234 77888999999
Q ss_pred eeeeccCCCCCCccccccccCCCcccHHHHHhhhcccchh---hhcccccceeEEEEeecCCCceEEEEeeeccCCcccc
Q psy1343 148 LYLTCDLPPPPLFKDEVLENIIPQVNLYTILTKFNNESEK---EYKTYKENFLKRFEITSLPPYLILYVKRFTKNTFFVE 224 (337)
Q Consensus 148 ~~lsl~ip~~~~~~~~~~~~~~~~~sl~~~L~~~~~~~~~---~c~~~~~~~~k~~~i~~lP~~Lii~l~Rf~~~~~~~~ 224 (337)
+.|+|+|.... +|++||+.++.++.. .|... ..+.++..|.++|++|+|||+||.++.....
T Consensus 83 ~~L~l~i~~~~--------------~L~e~L~~~~~ee~l~~~~~~~~-~~~~~~~~i~~lP~vL~i~LkRF~~~~~~~~ 147 (228)
T cd02665 83 GQYPLQVNGYG--------------NLHECLEAAMFEGEVELLPSDHS-VKSGQERWFTELPPVLTFELSRFEFNQGRPE 147 (228)
T ss_pred EEEEEEECCCC--------------CHHHHHHHhhhhcccccccccch-hhhhhhhhhhhCChhhEEEeEeeEEcCCccE
Confidence 99999997542 899999998876532 22222 5567778899999999999999998777778
Q ss_pred cCCceEeeCCCCCCCCCCCCchhhhhcchhhhhhhhccCCCcceeEeEEEEeecCCCCCeEEEEEEeCCCCcEEEecCCc
Q psy1343 225 KNPTIVNFPVKNVDFGDILTPEVKAKYESTMYDLVKAKYESTMYDLVANIVHDGEPSNGTYRVHLYHKGIGKWYEIQDLH 304 (337)
Q Consensus 225 K~~~~v~fp~~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avi~H~G~~~~GHY~a~vk~~~~~~W~~~nD~~ 304 (337)
|+++.|+||. .| ....|+|+|||+|.|++++|||+||+|...+++||+|||+.
T Consensus 148 Ki~~~v~FP~-~l--------------------------~~~~Y~L~aVi~H~G~~~~GHY~~~i~~~~~~~W~~fdD~~ 200 (228)
T cd02665 148 KIHDKLEFPQ-II--------------------------QQVPYELHAVLVHEGQANAGHYWAYIYKQSRQEWEKYNDIS 200 (228)
T ss_pred ECCEEEEeeC-cc--------------------------CCceeEEEEEEEecCCCCCCEEEEEEEcCCCCEEEEEECCe
Confidence 9999999994 44 13589999999999999999999999976689999999999
Q ss_pred ccccCcccccc--------CCcEEEEEE
Q psy1343 305 VTDILPQMITL--------TEAYIQIYE 324 (337)
Q Consensus 305 V~~v~~~~v~~--------~~aYiLfY~ 324 (337)
|++++.++|.. ..||||||.
T Consensus 201 V~~~~~~~v~~~~fGg~~~~~AYiLfYv 228 (228)
T cd02665 201 VTESSWEEVERDSFGGGRNPSAYCLMYI 228 (228)
T ss_pred eEEcCHHHHhhhccCCCCCCceEEEEEC
Confidence 99999988863 589999994
No 21
>KOG1867|consensus
Probab=100.00 E-value=2.7e-42 Score=327.03 Aligned_cols=289 Identities=25% Similarity=0.368 Sum_probs=236.0
Q ss_pred CCCChHHHHHhhccccccccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHhccCCCCcCCCCCHHHH
Q psy1343 2 LCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDF 81 (337)
Q Consensus 2 L~~~~~l~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~i~p~~~~~~l~~~~~~~f~~~~QqDa~Ef 81 (337)
|.|.+..+...|.....+. +......++.+++.++++.+|++.+ ..+++|..+++.+++. .+.+.++.|||||||
T Consensus 180 l~~~~~~~~~~l~~~h~~~---~~~~~~~~l~~~~~~~~~~~~s~~~-~~~~sp~~~l~~~~k~-~~~~~g~~Qqda~eF 254 (492)
T KOG1867|consen 180 LLHDPLSRSSFLSGIHSKE---PSSSGSSCLVCDLDRLFQALYSGHN-RTPYSPFELLNLVWKH-SPNLAGYEQQDAHEF 254 (492)
T ss_pred hhccchhhccchhhhcccC---CCCCCCcchhhhhhhhhhHhhcCCC-CCCcChHHHHHHHHHh-CcccccccccchHHH
Confidence 4456666777777665522 2222256899999999999999875 6799999999999998 799999999999999
Q ss_pred HHHHHHHHHHHh---------ccCCCCCCCcceeccCCeEeeeeecCCCcchhHhhhhhccccccCceeeeeecceeeec
Q psy1343 82 LSWFLNTLHRAL---------NGTKKKDSSIVYKTFLGSMKVKTRKIPPVELEEKVRQRLLLTEEYKETETESPFLYLTC 152 (337)
Q Consensus 82 l~~ll~~l~~~~---------~~~~~~~~~~i~~~F~g~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~s~~~e~f~~lsl 152 (337)
+..+++.++.+. .+..+...+++...|.|.+. +.++|..|+..+.+.++|++|+|
T Consensus 255 ~~~~~~~~~~~~~~~~k~~~~~~~~~~c~~iv~~~F~G~L~----------------~~v~c~~c~~~S~~~dpf~disL 318 (492)
T KOG1867|consen 255 LIALLDRLHREKDDCGKSLIASQSNKQCPCIVHTIFSGTLQ----------------SDVTCQTCGSKSTTYDPFMDISL 318 (492)
T ss_pred HHHhcccccccccccccccccccCCcccccccceeecceec----------------cceeehhhcceeeeccCccceee
Confidence 999999999987 12222447899999999999 78899999999999999999999
Q ss_pred cCCCCCCccccccccCCCcccHHHHHhhhccc---------chhhhcccccceeEEEEeecCCCceEEEEeeeccCCccc
Q psy1343 153 DLPPPPLFKDEVLENIIPQVNLYTILTKFNNE---------SEKEYKTYKENFLKRFEITSLPPYLILYVKRFTKNTFFV 223 (337)
Q Consensus 153 ~ip~~~~~~~~~~~~~~~~~sl~~~L~~~~~~---------~~~~c~~~~~~~~k~~~i~~lP~~Lii~l~Rf~~~~~~~ 223 (337)
+||.......... +..++.+|++.+... .|..|+.. +.++++..|.++|.+|.+|++||.+.....
T Consensus 319 ~i~~~~~~~~~~~----~~~~~~~cl~~~~~~~~~~~~~~~~c~~c~~~-~~~~kql~~~~lP~~l~~~lkRfe~~~~~~ 393 (492)
T KOG1867|consen 319 DIPDQFTSSSVRS----PELTLLDCLDRFTRSEQLGKDSKYKCSSCKSK-QESTKQLTIRKLPAVLCLHLKRFEHSATGA 393 (492)
T ss_pred ecchhccCccccc----chhhhhhhhhhhhhhhhcCcccccccCCcccc-cccccccccccCCceeeeeecccccccccc
Confidence 9996532111110 124688888877544 37777776 899999999999999999999999776533
Q ss_pred c-cCCceEeeCCCCCCCCCCCCchhhhhcchhhhhhhhccCCCcceeEeEEEEeecCCCCCeEEEEEEeCCCCcEEEecC
Q psy1343 224 E-KNPTIVNFPVKNVDFGDILTPEVKAKYESTMYDLVKAKYESTMYDLVANIVHDGEPSNGTYRVHLYHKGIGKWYEIQD 302 (337)
Q Consensus 224 ~-K~~~~v~fp~~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avi~H~G~~~~GHY~a~vk~~~~~~W~~~nD 302 (337)
. |+...|.|| ..|+|.+|+..+..... ......|+|.|||+|.|..++|||+||+|. .+.||+|||
T Consensus 394 ~~ki~~~v~fp-~~l~m~p~~~~~~~~~~----------~~~~~~Y~L~AVV~H~G~~~SGHY~aY~r~--~~~~~~~dD 460 (492)
T KOG1867|consen 394 REKIDSYVSFP-VLLNMKPYCSSEKLKSQ----------DNPDHLYELRAVVVHHGTVGSGHYVAYRRQ--SGGWFKCDD 460 (492)
T ss_pred ccccCcccccc-hhhcCCccccccccccC----------CCCCceEEEEEEEEeccCCCCCceEEEEEe--CCCcEEEcC
Confidence 3 999999999 58999999986332222 125799999999999999999999999999 589999999
Q ss_pred CcccccCccccccCCcEEEEEEecCCC
Q psy1343 303 LHVTDILPQMITLTEAYIQIYELRTTP 329 (337)
Q Consensus 303 ~~V~~v~~~~v~~~~aYiLfY~r~~~~ 329 (337)
+.|+.+++++|.+..||+|||.+....
T Consensus 461 s~v~~~s~~eVl~~~aylLFY~~~~~~ 487 (492)
T KOG1867|consen 461 STVTKVSEEEVLSSQAYLLFYTQEQVE 487 (492)
T ss_pred eEEEEeeHHHhhhchhhheehhHHhhh
Confidence 999999999999999999999886543
No 22
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C19 (ubiquitin-specific protease family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. Predicted active site residues for members of this family and family C1 occur in the same order in the sequence: N/Q, C, H. The type example is human ubiquitin-specific protease 14. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa, IPR001578 from INTERPRO, and 100-200 kDa) []: this family are the 100-200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process; PDB: 2LBC_A 3MHH_A 3MHS_A 3M99_A 2Y6E_D 2VHF_A 2HD5_A 3NHE_A 2IBI_A 1NBF_B ....
Probab=100.00 E-value=7.9e-41 Score=298.91 Aligned_cols=236 Identities=28% Similarity=0.473 Sum_probs=189.1
Q ss_pred CCCCChHHHHHhhcccccccc-CCCCCCCchHHHHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHhccCCCCcCCCCCHH
Q psy1343 1 ALCHVTPLRDYFLREINYARV-KRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPI 79 (337)
Q Consensus 1 ~L~~~~~l~~~~l~~~~~~~~-~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~i~p~~~~~~l~~~~~~~f~~~~QqDa~ 79 (337)
||+++|+||++++........ ...+.....+++++|+.|+..||.+......+.|..|+.++... .+.|..+.||||+
T Consensus 19 ~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~i~~~~~~~~l~~~-~~~~~~~~qqDa~ 97 (269)
T PF00443_consen 19 CLFHIPPFRNYLLSYNSEKENNESNPSKKIKEFLQQLQNLFRSLWSSNSSDSSISPSDFINALSSI-NPSFSNGEQQDAH 97 (269)
T ss_dssp HHHTSHHHHHHHHTTCHHHHHHCSSTTSCTCHHHHHHHHHHHHHHSSCSSSSEEHCHHHHHHHHHH-CGGGGSSSTEEHH
T ss_pred hhhhhhhhhhhhhhcccchhhccccccccccchhhhhhhhhhhhhhhcccccceeecccccccccc-ccccccccccchh
Confidence 589999999999976222111 11222233579999999999999984337799999999999876 6779999999999
Q ss_pred HHHHHHHHHHHHHhccCCC---------CCCCcceeccCCeEeeeeecCCCcchhHhhhhhccccccCceeeeeecceee
Q psy1343 80 DFLSWFLNTLHRALNGTKK---------KDSSIVYKTFLGSMKVKTRKIPPVELEEKVRQRLLLTEEYKETETESPFLYL 150 (337)
Q Consensus 80 Efl~~ll~~l~~~~~~~~~---------~~~~~i~~~F~g~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~s~~~e~f~~l 150 (337)
||+..||+.|+++...... ...+++.++|++++. +.+.|..|+..
T Consensus 98 E~l~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~----------------~~~~c~~c~~~---------- 151 (269)
T PF00443_consen 98 EFLSFLLDWLDEEFNSSFKRKSWKNTNSSEDSLISDLFGGQFE----------------SSIKCSSCKNS---------- 151 (269)
T ss_dssp HHHHHHHHHHHHHHTSCSSHHHHHHHHCCEESHHHHHH-EEEE----------------EEEEETTTTCE----------
T ss_pred hhhcccccccchhhccccccccccccccccccccccccccccc----------------ccccccccccc----------
Confidence 9999999999999876432 346678899999988 55678888887
Q ss_pred eccCCCCCCccccccccCCCcccHHHHHhhhcccchhhhcccccceeEEEEeecCCCceEEEEeeecc--CCcccccCCc
Q psy1343 151 TCDLPPPPLFKDEVLENIIPQVNLYTILTKFNNESEKEYKTYKENFLKRFEITSLPPYLILYVKRFTK--NTFFVEKNPT 228 (337)
Q Consensus 151 sl~ip~~~~~~~~~~~~~~~~~sl~~~L~~~~~~~~~~c~~~~~~~~k~~~i~~lP~~Lii~l~Rf~~--~~~~~~K~~~ 228 (337)
...|.++|++|+|+|+||.+ ......|+..
T Consensus 152 ------------------------------------------------~~~~~~~P~~L~i~l~R~~~~~~~~~~~K~~~ 183 (269)
T PF00443_consen 152 ------------------------------------------------QSSISSLPPILIIQLKRFEFDQETGRSKKINN 183 (269)
T ss_dssp ------------------------------------------------EEEEEEBBSEEEEEEE-EEEESTSSEEEE--C
T ss_pred ------------------------------------------------ccccccccceeeeccccceecccccccccccc
Confidence 56689999999999999953 3445789999
Q ss_pred eEeeCCCCCCCCCCCCchhhhhcchhhhhhhhccCCCcceeEeEEEEeecCCCCCeEEEEEEeCCCCcEEEecCCccccc
Q psy1343 229 IVNFPVKNVDFGDILTPEVKAKYESTMYDLVKAKYESTMYDLVANIVHDGEPSNGTYRVHLYHKGIGKWYEIQDLHVTDI 308 (337)
Q Consensus 229 ~v~fp~~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avi~H~G~~~~GHY~a~vk~~~~~~W~~~nD~~V~~v 308 (337)
.|.||++.|||++++..+..... ....|+|+|||+|.|+.++|||+||+|+..+++|++|||+.|+++
T Consensus 184 ~v~~~~~~l~l~~~~~~~~~~~~------------~~~~Y~L~avi~H~G~~~~GHY~a~v~~~~~~~W~~~dD~~v~~~ 251 (269)
T PF00443_consen 184 PVEFPLEELDLSPYLEKNNSECQ------------SNVKYRLVAVIVHYGSADSGHYVAYVRDSDDGKWYKFDDSRVTEV 251 (269)
T ss_dssp EEB--SSEEEGGGGBSSCCCTHT------------SSSEEEEEEEEEEESSTTSEEEEEEEEETTTTEEEEEETTEEEEE
T ss_pred ccccCchhhhhhhhhcccccccc------------ccceeeehhhhccccccccceEEEeeccccCCeEEEeeCCceEEC
Confidence 99999658999999877653322 468999999999999889999999999975667999999999999
Q ss_pred Ccccccc---CCcEEEEE
Q psy1343 309 LPQMITL---TEAYIQIY 323 (337)
Q Consensus 309 ~~~~v~~---~~aYiLfY 323 (337)
+.++|.. .+||||||
T Consensus 252 ~~~~v~~~~~~~~yll~Y 269 (269)
T PF00443_consen 252 SWEEVIKSSNSTAYLLFY 269 (269)
T ss_dssp SHHHHCCGGSTCEEEEEE
T ss_pred CHHHHhhccCCceEEEeC
Confidence 9999988 99999999
No 23
>KOG2026|consensus
Probab=100.00 E-value=1.1e-40 Score=293.74 Aligned_cols=290 Identities=54% Similarity=0.888 Sum_probs=252.1
Q ss_pred CCCCChHHHHHhhccccccccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHhccCCCCcCCCCCHHH
Q psy1343 1 ALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPID 80 (337)
Q Consensus 1 ~L~~~~~l~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~i~p~~~~~~l~~~~~~~f~~~~QqDa~E 80 (337)
+|+|.+|+|+||+..... .+.-+.++..|+.+++++|+++++++.++|.++++++..++...|..++|.|+.|
T Consensus 152 ~ls~v~PlRnyFl~~~n~-------~d~~~~lv~rl~~l~rklw~~r~fk~hvSphe~lqaV~~~s~k~f~i~~q~Dpve 224 (442)
T KOG2026|consen 152 ALSHVVPLRNYFLLEENY-------FDNLTELVQRLGELIRKLWNPRNFKGHVSPHEFLQAVMKLSKKRFRIGQQSDPVE 224 (442)
T ss_pred HHhccchhhhhhcccccc-------cchhHHHHHHHHHHHHHhcChhhhcccCCHHHHHHHHHHHhhhheecCCCCCHHH
Confidence 378999999999988642 2334689999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCCCCCcceeccCCeEeeeeecCCCcchhHhhhhhccccccCceeeeeecceeeeccCCCCCCc
Q psy1343 81 FLSWFLNTLHRALNGTKKKDSSIVYKTFLGSMKVKTRKIPPVELEEKVRQRLLLTEEYKETETESPFLYLTCDLPPPPLF 160 (337)
Q Consensus 81 fl~~ll~~l~~~~~~~~~~~~~~i~~~F~g~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~s~~~e~f~~lsl~ip~~~~~ 160 (337)
||.|||+.||.+++..+ ..++||++.|+|++++.++.+.. -..-.......-+|++|+|++|+.+.+
T Consensus 225 Flswllntlhs~l~~~k-~~~SIi~~~fqG~~ri~k~~~~~------------~~~~~~~~i~~~~Fl~LtLDLP~~plf 291 (442)
T KOG2026|consen 225 FLSWLLNTLHSDLRGSK-KASSIIHKSFQGEVRIVKEKQGE------------ASENENKEISVMPFLYLTLDLPPPPLF 291 (442)
T ss_pred HHHHHHHHHHHHhCCCC-CchhHhhHhhcceEEeeeecccc------------ccccccceEEEEeeEEEEecCCCCCcc
Confidence 99999999999998776 77799999999999987664430 111223456677899999999999999
Q ss_pred cccccccCCCcccHHHHHhhhcccchhhhcccccceeEEEEeecCCCceEEEEeeeccCCcccccCCceEeeCCCCCCCC
Q psy1343 161 KDEVLENIIPQVNLYTILTKFNNESEKEYKTYKENFLKRFEITSLPPYLILYVKRFTKNTFFVEKNPTIVNFPVKNVDFG 240 (337)
Q Consensus 161 ~~~~~~~~~~~~sl~~~L~~~~~~~~~~c~~~~~~~~k~~~i~~lP~~Lii~l~Rf~~~~~~~~K~~~~v~fp~~~Ldl~ 240 (337)
++....+++|++.|.++|.+|.+....+..+. ..+ +++.+.++|+|||+|++||..+++..+|+.+-++||...+|+.
T Consensus 292 kD~~e~niiPQV~l~~lL~Kf~g~t~~e~~~~-~~~-~rf~l~k~P~ylifh~~rF~kNn~f~ekNpTl~~f~~~~~~~~ 369 (442)
T KOG2026|consen 292 KDVMEKNIIPQVALFDLLKKFDGETVTEVVTP-KLA-MRFRLTKLPRYLIFHMKRFKKNNFFKEKNPTLVEFPYSEVDIL 369 (442)
T ss_pred cchhhhcccccchHHHHHHHhcCceeeeecch-hhh-hheeeecCCceEEEEeeeccccCcccccCCceeeccCCccchh
Confidence 99999999999999999999999988877765 444 8999999999999999999999999999999999997678887
Q ss_pred CCCCchhhhhcchhhhhhhhccCCCcceeEeEEEEeecCCCCCeEEEEEEeCCCCcEEEecCCcccccCccccccCCcEE
Q psy1343 241 DILTPEVKAKYESTMYDLVKAKYESTMYDLVANIVHDGEPSNGTYRVHLYHKGIGKWYEIQDLHVTDILPQMITLTEAYI 320 (337)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avi~H~G~~~~GHY~a~vk~~~~~~W~~~nD~~V~~v~~~~v~~~~aYi 320 (337)
++......... .-..|.|+|-+.|. ..-|||...+++...++||.++|-+|++...+-+..+++||
T Consensus 370 ~~~~~~~~~~~------------~~~~~~~~~N~i~~--~e~~~~riqi~~~~s~kW~eiqdl~v~e~~~qmi~L~Es~i 435 (442)
T KOG2026|consen 370 HVLDRLKAVNH------------KVTQYSLVANAIHE--DEDGNFRIQIYDNSSEKWYEIQDLHVTERLPQMIFLKESFI 435 (442)
T ss_pred hhhhhcccccC------------ccccccchhhhhcC--cccCceEEEEEeCCCcceEEecccchhhhhhHHHHHHHHHH
Confidence 77654433222 34789999999998 57899999999998999999999999999999999999999
Q ss_pred EEEEec
Q psy1343 321 QIYELR 326 (337)
Q Consensus 321 LfY~r~ 326 (337)
-+|++.
T Consensus 436 Qiwe~~ 441 (442)
T KOG2026|consen 436 QIWEKQ 441 (442)
T ss_pred HHHhcc
Confidence 999875
No 24
>KOG1870|consensus
Probab=100.00 E-value=1.3e-39 Score=329.17 Aligned_cols=290 Identities=27% Similarity=0.420 Sum_probs=249.1
Q ss_pred CCCCChHHHHHhhccccccccCC-CCCCCchHHHHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHhccCCCCcCCCCCHH
Q psy1343 1 ALCHVTPLRDYFLREINYARVKR-PPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPI 79 (337)
Q Consensus 1 ~L~~~~~l~~~~l~~~~~~~~~~-~~~~~~~~l~~~l~~l~~~l~~~~~~~~~i~p~~~~~~l~~~~~~~f~~~~QqDa~ 79 (337)
||.+.+++++||+........+. .+....+.+..+++.++..+|++. +..+.|..+...+... .++|.+..|||++
T Consensus 264 ~l~~~~~l~e~f~~~~~~~ein~~n~~~~~~~~~~~~~~l~~~~~s~~--~~~v~~~~~~~~~~~~-a~~~~g~~q~d~~ 340 (842)
T KOG1870|consen 264 CLSNTPELLEYFLSDLYDREINESNPLGSAGEVASSFADLIKQLWSGN--KSAVAPTSFRTSLASF-ASEFSGYGQQDSQ 340 (842)
T ss_pred hhccCcchhHHHHhHhhHhhhcccCCCcccceechhhhhHHHHhccCC--ccccCchhhhhhhhhc-cccccCcccccch
Confidence 78999999999999776653333 345556889999999999999998 5689999999999775 7889999999999
Q ss_pred HHHHHHHHHHHHHhccCCC---------------------------CCCCcceeccCCeEeeeeecCCCcchhHhhhhhc
Q psy1343 80 DFLSWFLNTLHRALNGTKK---------------------------KDSSIVYKTFLGSMKVKTRKIPPVELEEKVRQRL 132 (337)
Q Consensus 80 Efl~~ll~~l~~~~~~~~~---------------------------~~~~~i~~~F~g~~~~~~~~~~~~~~~~~~~~~~ 132 (337)
||+.+++|.||++++...+ ...+++.++|.|.+. +.+
T Consensus 341 E~lafllDglhedl~~~~~kpy~~~~d~~~rp~~~~~~~~~~~~~~~~~s~i~d~~~~~~~----------------S~~ 404 (842)
T KOG1870|consen 341 ELLAFLLDGLHEDLNRVSSKPYVEGKDSDLRPDQEVAAEVWDYHLKRNRSVIVDLFDGTYK----------------STL 404 (842)
T ss_pred hhhhHHhhhhhHHhhccCCcCcccccccccchhhhhhHHHHHhhhhhccceeeeeecceec----------------ccc
Confidence 9999999999999986542 346789999999999 788
Q ss_pred cccccCceeeeeecceeeeccCC---------------------------------------------------------
Q psy1343 133 LLTEEYKETETESPFLYLTCDLP--------------------------------------------------------- 155 (337)
Q Consensus 133 ~C~~C~~~s~~~e~f~~lsl~ip--------------------------------------------------------- 155 (337)
.|..|+..+.++++|.+|+|++|
T Consensus 405 ~c~~C~~~svt~d~f~~Lslp~p~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~i~ 484 (842)
T KOG1870|consen 405 QCPTCGKVSVTFDPFGYLSLPLPGKEIQKLEVTVPHGDGFRKPGALGVSVAKNGRIRDLLEYLSRTVGLLSWELKPVEIL 484 (842)
T ss_pred cCccCCCceEEeeccccccccCCCCcccceeEEEecCCCCCChhheeeeccccchHHHHHHHHHHHhccchhhcccceec
Confidence 99999999999999999999998
Q ss_pred --------------------------------------------------------------------------------
Q psy1343 156 -------------------------------------------------------------------------------- 155 (337)
Q Consensus 156 -------------------------------------------------------------------------------- 155 (337)
T Consensus 485 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~t 564 (842)
T KOG1870|consen 485 FDCFNKIFAADELKLDSIYSDEELFDYELGVLKVQGSIYAIIVVRFRSRLPRSKGIRSHVSSKLFGLPLLVSVLSGAQST 564 (842)
T ss_pred cchhhhhhccCccccccccCCcceEEeecccccccccceEEEEEeeccccccccCcccCCCccccCCcceeeccCCCccc
Confidence
Q ss_pred ----------------CC-----------CCccc-----------------------------ccc--------------
Q psy1343 156 ----------------PP-----------PLFKD-----------------------------EVL-------------- 165 (337)
Q Consensus 156 ----------------~~-----------~~~~~-----------------------------~~~-------------- 165 (337)
.. ..... ...
T Consensus 565 ~~~l~~~~~~~~s~~~~~~~~~v~~~~~~~~~~~~~e~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 644 (842)
T KOG1870|consen 565 EEDLLSVICHRTSRYSREPPLNVGYGVDDQSLKEVSEQSAESSSSVSRDPSEDDNSDQDLSLECLSEESALRFFQSLESR 644 (842)
T ss_pred ccchhhHHhhcccccCCcCccccccCCCcccccccccccccccccccCCChhHhccccccchhhccCccccccccccccc
Confidence 00 00000 000
Q ss_pred ---------------------------------------------ccCCCcccHHHHHhhhcccc---------hhhhcc
Q psy1343 166 ---------------------------------------------ENIIPQVNLYTILTKFNNES---------EKEYKT 191 (337)
Q Consensus 166 ---------------------------------------------~~~~~~~sl~~~L~~~~~~~---------~~~c~~ 191 (337)
......++|++||+.|...+ |+.|+.
T Consensus 645 ~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~cl~~F~~~E~L~~~~~w~C~~Cke 724 (842)
T KOG1870|consen 645 NKSDSEFEPGSTSIAVDWSPSAKYKYSSSLVSQPPEVEPRGASRSKGSPAPNSLESCLELFSEPETLGKDDRWYCPQCKE 724 (842)
T ss_pred ccccccccCCCceeecccChhhccccccccccccccccccccccccCCCCcccHHHHHHhhcchhcCCccccccChHHHH
Confidence 00001469999999998764 889998
Q ss_pred cccceeEEEEeecCCCceEEEEeeeccCCcccccCCceEeeCCCCCCCCCCCCchhhhhcchhhhhhhhccCCCcceeEe
Q psy1343 192 YKENFLKRFEITSLPPYLILYVKRFTKNTFFVEKNPTIVNFPVKNVDFGDILTPEVKAKYESTMYDLVKAKYESTMYDLV 271 (337)
Q Consensus 192 ~~~~~~k~~~i~~lP~~Lii~l~Rf~~~~~~~~K~~~~v~fp~~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~ 271 (337)
. ..|+|+..++++|++||||||||.+...+..|+...|+||+..||+++|+... ....|+|+
T Consensus 725 ~-~~A~Kk~~lwrlPeiLiihLKrF~~~r~~~~k~~~~v~fPi~~ld~s~~~~~~-----------------~~~~Y~l~ 786 (842)
T KOG1870|consen 725 L-RQATKKLDLWRLPEILIIHLKRFQYSRESSSKVKTKVEFPLGSLDLSEFVVNK-----------------EQVLYDLY 786 (842)
T ss_pred H-HHHhhhhhhhhCCceEEEEeecceeechhhhhhCccccCCCcCCCcchhhccC-----------------ccceeeee
Confidence 8 99999999999999999999999999988899999999999999999999865 23899999
Q ss_pred EEEEeecCCCCCeEEEEEEeCCCCcEEEecCCcccccCccccccCCcEEEEEEecC
Q psy1343 272 ANIVHDGEPSNGTYRVHLYHKGIGKWYEIQDLHVTDILPQMITLTEAYIQIYELRT 327 (337)
Q Consensus 272 avi~H~G~~~~GHY~a~vk~~~~~~W~~~nD~~V~~v~~~~v~~~~aYiLfY~r~~ 327 (337)
||.+|.|.+.+|||+||+|...+++||.|||+.|++++++++.+..||+|||+|++
T Consensus 787 av~nHyG~l~~GHYta~~k~~~~~~w~~fdDs~v~~~~~~~i~t~~aY~Lfy~r~~ 842 (842)
T KOG1870|consen 787 AVGNHYGQLSGGHYTAYAKNVGDGKWYLFDDSSVSEVDEDEIDTEAAYVLFYRRLD 842 (842)
T ss_pred eeecccCCcCCcchhhhhhcCCCCceEEeccccCCCCChhhcccccceEEEEEecC
Confidence 99999999999999999999879999999999999999999999999999999974
No 25
>cd02666 Peptidase_C19J A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=6.8e-40 Score=300.64 Aligned_cols=276 Identities=21% Similarity=0.237 Sum_probs=199.8
Q ss_pred CCCCChHHHHHhhccccccc-----cCC---CCC--------CCchHHHHHHHHHHHHHhCCCCCCCCCChHHHHHHHHH
Q psy1343 1 ALCHVTPLRDYFLREINYAR-----VKR---PPG--------DSSFLLVQRFGELMRKLWNPRNFKSHVSPHEMLQAVVL 64 (337)
Q Consensus 1 ~L~~~~~l~~~~l~~~~~~~-----~~~---~~~--------~~~~~l~~~l~~l~~~l~~~~~~~~~i~p~~~~~~l~~ 64 (337)
||+++|+||++++....... ... -.+ ....+++.+|+.||..|+.+. ...++|..++..+.
T Consensus 19 ~L~~i~~lR~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LF~~l~~s~--~~~v~P~~~l~~l~- 95 (343)
T cd02666 19 YFFTIKPLRDLVLNFDESKAELASDYPTERRIGGREVSRSELQRSNQFVYELRSLFNDLIHSN--TRSVTPSKELAYLA- 95 (343)
T ss_pred HHHccHHHHHHHHcCCccccccccccccccccCccccchhhhhhHHHHHHHHHHHHHHHHhCC--CCccCcHHHHHhcc-
Confidence 68999999999998652211 000 000 112479999999999999887 78999999987663
Q ss_pred hccCCCCcCCCCCHHHHHHHHHHHHHHHhccCCC-----------CCCCcceeccCCeEeeeeecCCCcchhHhhhhhcc
Q psy1343 65 WSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKK-----------KDSSIVYKTFLGSMKVKTRKIPPVELEEKVRQRLL 133 (337)
Q Consensus 65 ~~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~~~-----------~~~~~i~~~F~g~~~~~~~~~~~~~~~~~~~~~~~ 133 (337)
| .||||+||+..||++|+++++.... ...++|.++|+|++. +.+.
T Consensus 96 -----~---~QQDa~Ef~~~lld~Le~~lk~~~~~~~~~~~~~~~~~~~~I~~lF~G~~~----------------~~i~ 151 (343)
T cd02666 96 -----L---RQQDVTECIDNVLFQLEVALEPISNAFAGPDTEDDKEQSDLIKRLFSGKTK----------------QQLV 151 (343)
T ss_pred -----c---cccchHHHHHHHHHHHHHHhcCccccccCcccccccchhhhhhHhceeeEE----------------EEEE
Confidence 1 8999999999999999999875432 225689999999998 6678
Q ss_pred ccccC---ceeeeeecceeeeccCCCCCCccccccccCCCcccHHHHHhhhcccchhhhcccccceeEEEEeecCCCceE
Q psy1343 134 LTEEY---KETETESPFLYLTCDLPPPPLFKDEVLENIIPQVNLYTILTKFNNESEKEYKTYKENFLKRFEITSLPPYLI 210 (337)
Q Consensus 134 C~~C~---~~s~~~e~f~~lsl~ip~~~~~~~~~~~~~~~~~sl~~~L~~~~~~~~~~c~~~~~~~~k~~~i~~lP~~Li 210 (337)
|..|+ ..+.+.|+|+.|+|+|+....-. -......+|.+||+.|+..+- |.++|++|.
T Consensus 152 c~~~~~~~~~s~~~E~F~~L~l~I~~~~~~~----~~~~~~~~L~d~L~~~~~~e~---------------~~~~P~vl~ 212 (343)
T cd02666 152 PESMGNQPSVRTKTERFLSLLVDVGKKGREI----VVLLEPKDLYDALDRYFDYDS---------------LTKLPQRSQ 212 (343)
T ss_pred ecccCCCCCCccccceeEEEEEecCcccccc----cccCCCCCHHHHHHHhcChhh---------------hccCCHHHH
Confidence 88887 78899999999999998632100 000013589999999987766 999999999
Q ss_pred EEEeeeccCCcccccCCceEeeCCCCCCCCCCCCchhhhhcc-----------hhhh--hhhhccCCCcceeEeEEEEee
Q psy1343 211 LYVKRFTKNTFFVEKNPTIVNFPVKNVDFGDILTPEVKAKYE-----------STMY--DLVKAKYESTMYDLVANIVHD 277 (337)
Q Consensus 211 i~l~Rf~~~~~~~~K~~~~v~fp~~~Ldl~~~~~~~~~~~~~-----------~~~~--~~~~~~~~~~~Y~L~avi~H~ 277 (337)
|||+ +.+......+...+.++| ...|..+++......... .... +..........|+|+|||+|.
T Consensus 213 ~qlq-~~~~~~~~~~~~dry~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Y~L~avv~H~ 290 (343)
T cd02666 213 VQAQ-LAQPLQRELISMDRYELP-SSIDDIDELIREAIQSESSLVRQAQNELAELKHEIEKQFDDLKSYGYRLHAVFIHR 290 (343)
T ss_pred HHHh-hcccccchheeecccccc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCceEEEEEEEee
Confidence 9999 333333333444444555 333433332221110000 0000 001234468899999999999
Q ss_pred cCCCCCeEEEEEEeCCCCcEEEecCCcccccCcccccc------CCcEEEEEE
Q psy1343 278 GEPSNGTYRVHLYHKGIGKWYEIQDLHVTDILPQMITL------TEAYIQIYE 324 (337)
Q Consensus 278 G~~~~GHY~a~vk~~~~~~W~~~nD~~V~~v~~~~v~~------~~aYiLfY~ 324 (337)
|+.++|||++|+|+..++.||+|||+.|++++.++++. .+||||+|.
T Consensus 291 G~~~~GHY~~~~~~~~~~~W~~~dD~~V~~v~~~ev~~~~~~~~~~pY~l~Yv 343 (343)
T cd02666 291 GEASSGHYWVYIKDFEENVWRKYNDETVTVVPASEVFLFTLGNTATPYFLVYV 343 (343)
T ss_pred cCCCCCeEEEEEEECCCCeEEEEECCeeEEecHHHHhhcccCCCCCCEEEEeC
Confidence 99999999999999777899999999999999988874 799999994
No 26
>KOG1866|consensus
Probab=100.00 E-value=4.7e-41 Score=316.29 Aligned_cols=291 Identities=22% Similarity=0.313 Sum_probs=231.2
Q ss_pred CCCChHHHHHhhccccccccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHhccCCCCcCCCCCHHHH
Q psy1343 2 LCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDF 81 (337)
Q Consensus 2 L~~~~~l~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~i~p~~~~~~l~~~~~~~f~~~~QqDa~Ef 81 (337)
|.++|.+|.-.+....... .+.-.-...+.+.++.+|..+..++ -.++.|..|.+.+..+ +...+..+||||-||
T Consensus 114 lymIP~Lrh~ll~~~~~td--~pd~s~~e~vl~~lQ~iF~hL~~s~--lQyyVPeg~Wk~Fr~~-~~pln~reqhDA~eF 188 (944)
T KOG1866|consen 114 LYMIPGLRHLLLAFVGTTD--LPDMSGDEKVLRHLQVIFGHLAASQ--LQYYVPEGFWKQFRLW-GEPLNLREQHDALEF 188 (944)
T ss_pred hhhcccccchhhhhccccc--chhhcchHHHHHHHHHHHHHHHHHh--hhhhcchhHHHHhhcc-CCccchHhhhhHHHH
Confidence 4577888876665543311 1100011238999999999998888 7899999999999776 577788999999999
Q ss_pred HHHHHHHHHHHhccCCCCCCCcceeccCCeEeeeeecCCCcchhHhhhhhccccccCceeeeeecceeeeccCCCCCCcc
Q psy1343 82 LSWFLNTLHRALNGTKKKDSSIVYKTFLGSMKVKTRKIPPVELEEKVRQRLLLTEEYKETETESPFLYLTCDLPPPPLFK 161 (337)
Q Consensus 82 l~~ll~~l~~~~~~~~~~~~~~i~~~F~g~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~s~~~e~f~~lsl~ip~~~~~~ 161 (337)
+..|||.+++.++... .+.++...|+|.+. .+-+|..|-+.-...|+|+.|+|.|...
T Consensus 189 f~sLld~~De~LKklg--~p~lf~n~f~G~ys----------------dqKIC~~CpHRY~~eE~F~~l~l~i~~~---- 246 (944)
T KOG1866|consen 189 FNSLLDSLDEALKKLG--HPQLFSNTFGGSYS----------------DQKICQGCPHRYECEESFTTLNLDIRHQ---- 246 (944)
T ss_pred HHHHHHHHHHHHHHhC--CcHHHHHHhcCccc----------------hhhhhccCCcccCccccceeeeeecccc----
Confidence 9999999999998765 44578889999998 6678999999999999999999999844
Q ss_pred ccccccCCCcccHHHHHhhhccc---------chhhhcccccceeEEEEeecCCCceEEEEeeeccC--CcccccCCceE
Q psy1343 162 DEVLENIIPQVNLYTILTKFNNE---------SEKEYKTYKENFLKRFEITSLPPYLILYVKRFTKN--TFFVEKNPTIV 230 (337)
Q Consensus 162 ~~~~~~~~~~~sl~~~L~~~~~~---------~~~~c~~~~~~~~k~~~i~~lP~~Lii~l~Rf~~~--~~~~~K~~~~v 230 (337)
+|++.|++|.+. .|++|+.+ ....|+..|.+||++|+||||||.++ .....|-+..+
T Consensus 247 -----------nLeesLeqfv~gevlEG~nAYhCeKCdeK-~~TvkRt~ik~LPsvl~IqLkRF~yD~e~~~~iK~n~~f 314 (944)
T KOG1866|consen 247 -----------NLEESLEQFVKGEVLEGANAYHCEKCDEK-VDTVKRTCIKKLPSVLAIQLKRFDYDWERECAIKFNDYF 314 (944)
T ss_pred -----------hHHHHHHHHHHHHHhcCcchhhhhhhhhh-hHhHHHHHHhhCChhheehhhhccchhhhccccccchhc
Confidence 688888888655 49999887 88899999999999999999999854 55667999999
Q ss_pred eeCCCCCCCCCCCCchhhhhc--chhhhhhhhccCCCcceeEeEEEEeecCCCCCeEEEEEEeC---CCCcEEEecCCcc
Q psy1343 231 NFPVKNVDFGDILTPEVKAKY--ESTMYDLVKAKYESTMYDLVANIVHDGEPSNGTYRVHLYHK---GIGKWYEIQDLHV 305 (337)
Q Consensus 231 ~fp~~~Ldl~~~~~~~~~~~~--~~~~~~~~~~~~~~~~Y~L~avi~H~G~~~~GHY~a~vk~~---~~~~W~~~nD~~V 305 (337)
+|| ..|||.+|+..+..... ...............+|+|+||++|+|.+.+|||++||+.. ..++||+|||-.|
T Consensus 315 rFP-~~ldMePYtvsg~a~~e~~~~~~g~~~e~s~~t~~YeLvGVlvHSGqAsaGHYySfIk~rr~~~~~kWykfnD~~V 393 (944)
T KOG1866|consen 315 RFP-RELDMEPYTVSGVAKLEGENVESGQQLEQSAGTTKYELVGVLVHSGQASAGHYYSFIKQRRGEDGNKWYKFNDGDV 393 (944)
T ss_pred ccc-hhhcCCceeehhhhhhccccCCcCcccccccCcceeEEEEEEEecccccCcchhhhhhhhccCCCCceEeccCccc
Confidence 999 68999999876542211 00011112233578899999999999999999999999875 2478999999999
Q ss_pred cccCcccccc--------------------CCcEEEEEEecCCCCCC
Q psy1343 306 TDILPQMITL--------------------TEAYIQIYELRTTPSPT 332 (337)
Q Consensus 306 ~~v~~~~v~~--------------------~~aYiLfY~r~~~~~~~ 332 (337)
++++-+++.. -+||||||+|+++...+
T Consensus 394 te~~~n~me~~cfGGey~q~~~~~~~rrR~WNAYmlFYer~~d~p~~ 440 (944)
T KOG1866|consen 394 TECKMNEMENECFGGEYMQMMKRMSYRRRWWNAYMLFYERMDDIPTD 440 (944)
T ss_pred cccchhhHHHHhhcchhhhcccccchHHHhhhhHHHHHHHhcCCCcc
Confidence 9998665442 68999999999865543
No 27
>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=6.5e-37 Score=270.38 Aligned_cols=215 Identities=33% Similarity=0.500 Sum_probs=177.4
Q ss_pred CCCCHHHHHHHHHHHHHHHhccCC------CCCCCcceeccCCeEeeeeecCCCcchhHhhhhhccccccCceeeeeecc
Q psy1343 74 EQSDPIDFLSWFLNTLHRALNGTK------KKDSSIVYKTFLGSMKVKTRKIPPVELEEKVRQRLLLTEEYKETETESPF 147 (337)
Q Consensus 74 ~QqDa~Efl~~ll~~l~~~~~~~~------~~~~~~i~~~F~g~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~s~~~e~f 147 (337)
.||||+|||..+|+.|+.++.... ....+.+.++|+|.+. ..+.|..|+..+.....+
T Consensus 21 ~q~Da~E~l~~ll~~l~~~~~~~~~~~~~~~~~~~~i~~~F~~~~~----------------~~~~c~~c~~~~~~~~~~ 84 (255)
T cd02257 21 EQQDAHEFLLFLLDKLHEELKKSSKRTSDSSSLKSLIHDLFGGKLE----------------STIVCLECGHESVSTEPE 84 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccccccCCchhhhhcccEEe----------------eEEECCCCCCCccCcccc
Confidence 799999999999999999986532 2345789999999999 667899999888888888
Q ss_pred eeeeccCCCCCCccccccccCCCcccHHHHHhhhcccc------hhhhcc-cccceeEEEEeecCCCceEEEEeeeccCC
Q psy1343 148 LYLTCDLPPPPLFKDEVLENIIPQVNLYTILTKFNNES------EKEYKT-YKENFLKRFEITSLPPYLILYVKRFTKNT 220 (337)
Q Consensus 148 ~~lsl~ip~~~~~~~~~~~~~~~~~sl~~~L~~~~~~~------~~~c~~-~~~~~~k~~~i~~lP~~Lii~l~Rf~~~~ 220 (337)
..++|++|.... +..+|+++|+.++..+ |..|+. ..+.+.++..|.++|++|+|+++||.++.
T Consensus 85 ~~l~l~~~~~~~----------~~~~l~~~l~~~~~~e~~~~~~~~~c~~~~~~~~~~~~~i~~lP~~L~i~l~R~~~~~ 154 (255)
T cd02257 85 LFLSLPLPVKGL----------PQVSLEDCLEKFFKEEILEGDNCYKCEKKKKQEATKRLKIKKLPPVLIIHLKRFSFNE 154 (255)
T ss_pred eeEEeeccCCCC----------CCCcHHHHHHHhhhhhccCCCCcccCCCCcccceeEEEecccCCceeEEEeeceeecc
Confidence 889998887531 1358999999998764 555551 23788899999999999999999999776
Q ss_pred -cccccCCceEeeCCCCCCCCCCCCchhhhhcchhhhhhhhccCCCcceeEeEEEEeecCC-CCCeEEEEEEeCCCCcEE
Q psy1343 221 -FFVEKNPTIVNFPVKNVDFGDILTPEVKAKYESTMYDLVKAKYESTMYDLVANIVHDGEP-SNGTYRVHLYHKGIGKWY 298 (337)
Q Consensus 221 -~~~~K~~~~v~fp~~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avi~H~G~~-~~GHY~a~vk~~~~~~W~ 298 (337)
+...|++..|.|| +.+++..++...... .........|+|+|||+|.|.. ++|||+||+|+..+++||
T Consensus 155 ~~~~~k~~~~v~~~-~~l~~~~~~~~~~~~---------~~~~~~~~~Y~L~~vi~h~G~~~~~GHY~~~~~~~~~~~W~ 224 (255)
T cd02257 155 DGTKEKLNTKVSFP-LELDLSPYLSEGEKD---------SDSDNGSYKYELVAVVVHSGTSADSGHYVAYVKDPSDGKWY 224 (255)
T ss_pred ccccccCCCeEeCC-CcccCcccccccccc---------ccccCCCccEEEEEEEEEecCCCCCcCeEEEEeCCCCCceE
Confidence 6778999999999 689998887531000 0011167899999999999996 999999999997559999
Q ss_pred EecCCcccccCcccc-----ccCCcEEEEEE
Q psy1343 299 EIQDLHVTDILPQMI-----TLTEAYIQIYE 324 (337)
Q Consensus 299 ~~nD~~V~~v~~~~v-----~~~~aYiLfY~ 324 (337)
+|||+.|++++.+++ ....||+|||+
T Consensus 225 ~~nD~~V~~v~~~~~~~~~~~~~~~yll~Y~ 255 (255)
T cd02257 225 KFNDDKVTEVSEEEVLEFGSLSSSAYILFYE 255 (255)
T ss_pred EEeccccEEcCHHHhhhccCCCCceEEEEEC
Confidence 999999999999998 57999999995
No 28
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-35 Score=267.80 Aligned_cols=265 Identities=17% Similarity=0.188 Sum_probs=213.4
Q ss_pred hHHHHHHHHHHHHHhCCC--CCCCCCChHHHHHHHHHhccCCCCcCCCCCHHHHHHHHHHHHHHHhccCCCCCCCcceec
Q psy1343 30 FLLVQRFGELMRKLWNPR--NFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDSSIVYKT 107 (337)
Q Consensus 30 ~~l~~~l~~l~~~l~~~~--~~~~~i~p~~~~~~l~~~~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~~~i~~~ 107 (337)
.+|.|+|.+|+..|.... .+...|+|..|+..+++. .+.|..++||||+|||.+||+.|...... ...+.|.++
T Consensus 348 ~~l~CQl~kll~~mk~~p~~~y~ngi~p~~fk~~igq~-h~eFg~~~QQDA~EFLlfLL~kirk~~~S---~~~~~It~l 423 (749)
T COG5207 348 ECLFCQLMKLLSKMKETPDNEYVNGISPLDFKMLIGQD-HPEFGKFAQQDAHEFLLFLLEKIRKGERS---YLIPPITSL 423 (749)
T ss_pred hhHHHHHHHHHhhccCCCCccccCCcChhhHHHHHcCC-chhhhhhhhhhHHHHHHHHHHHHhhccch---hcCCCcchh
Confidence 579999999999998744 245689999999999886 89999999999999999999999985433 235668899
Q ss_pred cCCeEeeeeecCCCcchhHhhhhhccccccCceeeeeecceeeeccCCCCCCccccccccCCCcccHHHHHhhhcccc--
Q psy1343 108 FLGSMKVKTRKIPPVELEEKVRQRLLLTEEYKETETESPFLYLTCDLPPPPLFKDEVLENIIPQVNLYTILTKFNNES-- 185 (337)
Q Consensus 108 F~g~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~s~~~e~f~~lsl~ip~~~~~~~~~~~~~~~~~sl~~~L~~~~~~~-- 185 (337)
|..++. .++.|..|+.+++.+++...+.+++.+.. +..++.++++.|+.+.
T Consensus 424 f~Fe~e----------------~rlsC~~C~~v~ySye~~~~i~i~le~n~-----------E~~di~~~v~a~f~pdti 476 (749)
T COG5207 424 FEFEVE----------------RRLSCSGCMDVSYSYESMLMICIFLEGND-----------EPQDIRKSVEAFFLPDTI 476 (749)
T ss_pred hhhhhc----------------ceecccccccccccccceEEEEeecccCc-----------chhhHHHHHHheECccce
Confidence 999988 78899999999999999998888775542 2458999999998764
Q ss_pred ---hhhhcccccceeEEEEeecCCCceEEEEeeeccCCcccccCCceEeeCCC-CCCCCCCCCchhhhhcchhhhhh---
Q psy1343 186 ---EKEYKTYKENFLKRFEITSLPPYLILYVKRFTKNTFFVEKNPTIVNFPVK-NVDFGDILTPEVKAKYESTMYDL--- 258 (337)
Q Consensus 186 ---~~~c~~~~~~~~k~~~i~~lP~~Lii~l~Rf~~~~~~~~K~~~~v~fp~~-~Ldl~~~~~~~~~~~~~~~~~~~--- 258 (337)
|..|+.+ .+|++...|.++|++||+|..||+..++..+|+..++...-+ .+++..|+...........+.+.
T Consensus 477 E~~CenCk~K-~~a~~k~~~kslPk~LIlq~~R~~lqny~v~kls~pi~~~~D~m~~~~s~msk~~PqtEn~LPdedE~~ 555 (749)
T COG5207 477 EWSCENCKGK-KKASRKPFIKSLPKYLILQVGRYSLQNYKVEKLSDPIEMRSDDMIKLGSFMSKFDPQTENLLPDEDEAF 555 (749)
T ss_pred eeehhhhcCc-ccccccchhhccCceeEEecceeeccceeehhccCceEEccccccchhhHhhccCCcccccCCcccccc
Confidence 8889887 889999999999999999999999999999999888877522 47888887652111100000000
Q ss_pred --------------------------------------------------------------------------------
Q psy1343 259 -------------------------------------------------------------------------------- 258 (337)
Q Consensus 259 -------------------------------------------------------------------------------- 258 (337)
T Consensus 556 t~Nqs~I~qL~~mGfp~~~~~rAL~~tgNqDaEsAMNWLFqHMdDPdlndP~~~~~~vPKkDkeVdE~~~~Slle~Gln~ 635 (749)
T COG5207 556 TDNQSLIRQLVDMGFPEEDAARALGITGNQDAESAMNWLFQHMDDPDLNDPFVPPPNVPKKDKEVDESKARSLLENGLNP 635 (749)
T ss_pred CchHHHHHHHHHcCCCHHHHHHHHhhccCcchHHHHHHHHhhccCcccCCCCCCCCCCCcccccccHHHHHHHHHcCCCH
Confidence
Q ss_pred -------------------------------------------hhccCCCcceeEeEEEEeecC-CCCCeEEEEEEeCCC
Q psy1343 259 -------------------------------------------VKAKYESTMYDLVANIVHDGE-PSNGTYRVHLYHKGI 294 (337)
Q Consensus 259 -------------------------------------------~~~~~~~~~Y~L~avi~H~G~-~~~GHY~a~vk~~~~ 294 (337)
...-.....|.|.|||+|.|+ +.+|||++|||+...
T Consensus 636 n~~Rkal~~~n~d~~r~V~w~~N~~D~tF~EP~v~~eeqqqk~~~~~STa~PYaLtAvI~HkG~s~haGHYv~fIrk~~~ 715 (749)
T COG5207 636 NLCRKALMDMNTDSKRRVVWCINDDDGTFPEPEVPNEEQQQKKDLGYSTAKPYALTAVICHKGDSIHAGHYVWFIRKNGK 715 (749)
T ss_pred HHHHHHHHHccCCchheEEEEEeCCCCCCCCCCCCchhhhhcccccccccCcccceeEEeccCCcccccceEEEEecccC
Confidence 001112345999999999998 699999999998644
Q ss_pred C--cEEEecCCcccccCccccccCCcEEEEEEec
Q psy1343 295 G--KWYEIQDLHVTDILPQMITLTEAYIQIYELR 326 (337)
Q Consensus 295 ~--~W~~~nD~~V~~v~~~~v~~~~aYiLfY~r~ 326 (337)
+ +|.+|||+++..++.-+++..++||+||+|.
T Consensus 716 ~K~kWvl~nDek~v~~~svE~~k~nGYiylf~R~ 749 (749)
T COG5207 716 DKWKWVLKNDEKTVLNSSVEVLKDNGYIYLFKRC 749 (749)
T ss_pred cceeEEEEccchheehhhHHHHhhCCeEEEEecC
Confidence 4 5999999999999998889999999999984
No 29
>KOG1873|consensus
Probab=100.00 E-value=1.2e-36 Score=287.47 Aligned_cols=145 Identities=24% Similarity=0.315 Sum_probs=119.1
Q ss_pred cccHHHHHhhhcccc---------hhhhccc--------------------------ccceeEEEEeecCCCceEEEEee
Q psy1343 171 QVNLYTILTKFNNES---------EKEYKTY--------------------------KENFLKRFEITSLPPYLILYVKR 215 (337)
Q Consensus 171 ~~sl~~~L~~~~~~~---------~~~c~~~--------------------------~~~~~k~~~i~~lP~~Lii~l~R 215 (337)
+++++.||.+|+..| |+.|... ...+.+...|..+||||+|||||
T Consensus 677 p~Svq~CL~nFT~~E~Ls~~N~~~CEnCtk~~n~~~r~k~~~n~~~sk~s~~es~~~~t~akk~~li~~aPpVltihlKr 756 (877)
T KOG1873|consen 677 PCSVQRCLKNFTKVEILSGDNKWACENCTKNLNLQRREKRGLNEDNSKYSFNESEYRNTYAKKKVLINKAPPVLTIHLKR 756 (877)
T ss_pred CccHHHHHHhhhhhhhcccccchhhhhhhccccccchhhccCCCCcccccccchhhhhhhhheeeecccCCceeeehHhh
Confidence 679999999998654 7777551 02246677789999999999999
Q ss_pred eccCCc-ccccCCceEeeCCCCCCCCCCCCchhhhhcchhhhhhhhccCCCcceeEeEEEEeecCCCCCeEEEEEEeC--
Q psy1343 216 FTKNTF-FVEKNPTIVNFPVKNVDFGDILTPEVKAKYESTMYDLVKAKYESTMYDLVANIVHDGEPSNGTYRVHLYHK-- 292 (337)
Q Consensus 216 f~~~~~-~~~K~~~~v~fp~~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avi~H~G~~~~GHY~a~vk~~-- 292 (337)
|..... ...|.+.++.|+ +.+|+.+|+..-.....+ .....|+|.|||.|.|++.+||||||+|..
T Consensus 757 f~q~~~~~~~k~~~h~~f~-E~~dL~~~~~~rc~~l~~----------~~s~~Yrl~gvvehsgtm~~ghyvayv~~~t~ 825 (877)
T KOG1873|consen 757 FFQDIRGRLSKLNKHVDFK-EFEDLLDYMDFRCSHLDE----------PSSFVYRLAGVVEHSGTMSYGHYVAYVRGGTF 825 (877)
T ss_pred hhhhhhchhhcccccchHH-HHHHHHHHhhhhccccCC----------cchhhhhhccceeccccccCCcchhhhhccch
Confidence 986543 478999999999 889999887653322110 045689999999999999999999999854
Q ss_pred ------------------CCCcEEEecCCcccccCccccccCCcEEEEEEec
Q psy1343 293 ------------------GIGKWYEIQDLHVTDILPQMITLTEAYIQIYELR 326 (337)
Q Consensus 293 ------------------~~~~W~~~nD~~V~~v~~~~v~~~~aYiLfY~r~ 326 (337)
..++||...|+.|.+++.++|+...||||||+|.
T Consensus 826 ~~~~~~~~~~~~~sd~~~~~~~Wy~iSDs~VrevS~d~vLkseAYlLFYERI 877 (877)
T KOG1873|consen 826 LDLSAPSNSKDFESDAGIPSGRWYYISDSIVREVSLDEVLKSEAYLLFYERI 877 (877)
T ss_pred hhccCccccccchhccCCCCcceEEecchheecccHHHHhhhhhhhhheecC
Confidence 2578999999999999999999999999999984
No 30
>cd02670 Peptidase_C19N A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=6.4e-35 Score=253.99 Aligned_cols=195 Identities=18% Similarity=0.259 Sum_probs=140.4
Q ss_pred CCCCHHHHHHHHHHHHHHHhccCCCCCCCcceeccCCeEeeeeecCCCcchhHhhhhhccccccCceeeeeecceeeecc
Q psy1343 74 EQSDPIDFLSWFLNTLHRALNGTKKKDSSIVYKTFLGSMKVKTRKIPPVELEEKVRQRLLLTEEYKETETESPFLYLTCD 153 (337)
Q Consensus 74 ~QqDa~Efl~~ll~~l~~~~~~~~~~~~~~i~~~F~g~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~s~~~e~f~~lsl~ 153 (337)
.|||+.||+.+|+++|...+- ++..++|.|-.... .. . +...|.+..|.++
T Consensus 22 ~q~D~~e~~~~l~~~~~~~~~-------~~~~~~~~~g~~~~---------------~~----~---~~~~e~~l~l~ip 72 (241)
T cd02670 22 EQQDPEEFFNFITDKLLMPLL-------EPKVDIIHGGKKDQ---------------DD----D---KLVNERLLQIPVP 72 (241)
T ss_pred HhcCHHHHHHHHHHHHhhhhh-------hHHHHHHhcCcccc---------------cc----c---cccccceEEeecc
Confidence 899999999999999987542 23456665543310 00 0 2334545555444
Q ss_pred CCCCCCccccccccCCCcccHHHHHhhhcccchhhhcccccceeEEEEeecCCCceEEEEeeeccCCcccccCCceEeeC
Q psy1343 154 LPPPPLFKDEVLENIIPQVNLYTILTKFNNESEKEYKTYKENFLKRFEITSLPPYLILYVKRFTKNTFFVEKNPTIVNFP 233 (337)
Q Consensus 154 ip~~~~~~~~~~~~~~~~~sl~~~L~~~~~~~~~~c~~~~~~~~k~~~i~~lP~~Lii~l~Rf~~~~~~~~K~~~~v~fp 233 (337)
.+... ..++|++||+.|+..+. |.++|++|+||||||.+..+...|+++.|.||
T Consensus 73 ~~~~~-----------~~~tLedcLe~~~~~e~---------------i~~lP~vLiIhLKRF~~~~~~~~Kl~~~I~fP 126 (241)
T cd02670 73 DDDDG-----------GGITLEQCLEQYFNNSV---------------FAKAPSCLIICLKRYGKTEGKAQKMFKKILIP 126 (241)
T ss_pred cCCCC-----------CcCCHHHHHHHHhchhh---------------hhhCCCeEEEEEEccccCCCcceeCCcEECCC
Confidence 33221 14699999999988875 89999999999999998776678999999999
Q ss_pred CCCCCCCCCCCchhhhhcchh-------hhhhhhccCCCcceeEeEEEEeecC-CCCCeEEEEEEeCC-----------C
Q psy1343 234 VKNVDFGDILTPEVKAKYEST-------MYDLVKAKYESTMYDLVANIVHDGE-PSNGTYRVHLYHKG-----------I 294 (337)
Q Consensus 234 ~~~Ldl~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~Y~L~avi~H~G~-~~~GHY~a~vk~~~-----------~ 294 (337)
..|||.+|+..........+ .............|+|+|||+|.|+ +++|||+||+|... +
T Consensus 127 -~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~G~s~~sGHYva~vr~~~~~~~~~~~~~~~ 205 (241)
T cd02670 127 -DEIDIPDFVADDPRACSKCQLECRVCYDDKDFSPTCGKFKLSLCSAVCHRGTSLETGHYVAFVRYGSYSLTETDNEAYN 205 (241)
T ss_pred -CcCCchhhcccccccccccccccccccccccccCCCCCeEEEEEEEEEeCCCCCCCcCeEEEEECCcccccccccCCCC
Confidence 68999999876431100000 0000011224678999999999997 79999999999974 3
Q ss_pred CcEEEecCCcccccCcc------ccccCCcEEEEEE
Q psy1343 295 GKWYEIQDLHVTDILPQ------MITLTEAYIQIYE 324 (337)
Q Consensus 295 ~~W~~~nD~~V~~v~~~------~v~~~~aYiLfY~ 324 (337)
+.|++|||..|+.+... .+....||||||+
T Consensus 206 ~~W~~FDD~~v~~~~~~~~~~~~~~~~~~aYmLFYq 241 (241)
T cd02670 206 AQWVFFDDMADRDGVSNGFNIPAARLLEDPYMLFYQ 241 (241)
T ss_pred CeEEEecCcccccccccccccchhcccCCceEEEeC
Confidence 79999999998876532 4668999999996
No 31
>cd02672 Peptidase_C19P A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2e-35 Score=263.14 Aligned_cols=213 Identities=17% Similarity=0.194 Sum_probs=164.9
Q ss_pred CCCChHHHHHhhccccccccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHhccCCCCcCCCCCHHHH
Q psy1343 2 LCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDF 81 (337)
Q Consensus 2 L~~~~~l~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~i~p~~~~~~l~~~~~~~f~~~~QqDa~Ef 81 (337)
|+++|+||++ +... ...+....||.|+|+.|| .. + .|-|
T Consensus 34 ~~~~~~~~~~-~~~~------~~~~~~~~~l~~el~~lf---------------s~----~---------------iq~F 72 (268)
T cd02672 34 LYFIPPFRNF-TAII------LVACPKESCLLCELGYLF---------------ST----L---------------IQNF 72 (268)
T ss_pred HHhcHHHHHH-HHhh------cccCCcCccHHHHHHHHH---------------HH----H---------------HHHH
Confidence 6789999997 3222 112333479999999999 00 1 2557
Q ss_pred HHHHHHHHHHHhccCCCCCCCcceeccCCeEeeeeecCCCcchhHhhhhhccccccCceeeeeecceeeeccCCCCCCcc
Q psy1343 82 LSWFLNTLHRALNGTKKKDSSIVYKTFLGSMKVKTRKIPPVELEEKVRQRLLLTEEYKETETESPFLYLTCDLPPPPLFK 161 (337)
Q Consensus 82 l~~ll~~l~~~~~~~~~~~~~~i~~~F~g~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~s~~~e~f~~lsl~ip~~~~~~ 161 (337)
..+|++.+..+..... ..|++.+.+.++++.|+|++|...
T Consensus 73 ~~fll~~i~~~~~~~~-------------------------------------~~C~~~s~~~~~~~~LsLpip~~~--- 112 (268)
T cd02672 73 TRFLLETISQDQLGTP-------------------------------------FSCGTSRNSVSLLYTLSLPLGSTK--- 112 (268)
T ss_pred HHHHHHHHHHHhcccC-------------------------------------CCCCceeeccccceeeeeecCccc---
Confidence 8889999887642110 258999999999999999999753
Q ss_pred ccccccCCCcccHHHHHhhhcccc------hhhhcccccceeEEEEeecCCC----ceEEEEeeeccCC-------cccc
Q psy1343 162 DEVLENIIPQVNLYTILTKFNNES------EKEYKTYKENFLKRFEITSLPP----YLILYVKRFTKNT-------FFVE 224 (337)
Q Consensus 162 ~~~~~~~~~~~sl~~~L~~~~~~~------~~~c~~~~~~~~k~~~i~~lP~----~Lii~l~Rf~~~~-------~~~~ 224 (337)
..+..+|.+||+.+...+ |..|+.. +.+.++..|.++|+ +|+||||||.... ....
T Consensus 113 ------~~~~~sl~~cL~~~~~~E~~~~~~C~~C~~~-~~a~k~~~i~~lP~~L~~VL~i~lkrf~~~~~~~~~~~~~~~ 185 (268)
T cd02672 113 ------TSKESTFLQLLKRSLDLEKVTKAWCDTCCKY-QPLEQTTSIRHLPDILLLVLVINLSVTNGEFDDINVVLPSGK 185 (268)
T ss_pred ------cccCCCHHHHHHHHhhhhhcccccccccCcc-cccEEEEEeecCCCcccceEEEEEeccChhhcccCcceeEEE
Confidence 123569999999988664 8889877 99999999999999 9999999998543 1235
Q ss_pred cCCceEeeCCCCCCCCCCCCchhhhhcchhhhhhhhccCCCcceeEeEEEEeecCC-CCCeEEEEEEeCC----CCcEEE
Q psy1343 225 KNPTIVNFPVKNVDFGDILTPEVKAKYESTMYDLVKAKYESTMYDLVANIVHDGEP-SNGTYRVHLYHKG----IGKWYE 299 (337)
Q Consensus 225 K~~~~v~fp~~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avi~H~G~~-~~GHY~a~vk~~~----~~~W~~ 299 (337)
|++..|.|| ..+++......+.. ....|+|+|||+|+|+. ++|||+||||... +++||+
T Consensus 186 ~~~~~v~f~-~~~~~~~~~~~~~~---------------~~~~Y~L~gvV~hig~~~~~GHyva~vk~~~~~~~~~~Wyl 249 (268)
T cd02672 186 VMQNKVSPK-AIDHDKLVKNRGQE---------------SIYKYELVGYVCEINDSSRGQHNVVFVIKVNEESTHGRWYL 249 (268)
T ss_pred ecCCeeccc-ccccchhhhccCCC---------------CCceEEEEEEEEEecCCCCCCcEEEEEEccCCCCCCCcEEE
Confidence 778899999 45655544332211 56799999999999985 9999999999853 578999
Q ss_pred ecCCcccccCccccccCCcEEEEEE
Q psy1343 300 IQDLHVTDILPQMITLTEAYIQIYE 324 (337)
Q Consensus 300 ~nD~~V~~v~~~~v~~~~aYiLfY~ 324 (337)
|||..|++|++ .||||||+
T Consensus 250 FND~~V~~vs~------~aYiLfY~ 268 (268)
T cd02672 250 FNDFLVTPVSE------LAYILLYQ 268 (268)
T ss_pred ecCeEEEEcCc------hheeeecC
Confidence 99999999999 89999995
No 32
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.5e-36 Score=283.34 Aligned_cols=249 Identities=20% Similarity=0.274 Sum_probs=210.5
Q ss_pred hHHHHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHhccCCCCcCCCCCHHHHHHHHHHHHHHHhccCCCCCCCcceeccC
Q psy1343 30 FLLVQRFGELMRKLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDSSIVYKTFL 109 (337)
Q Consensus 30 ~~l~~~l~~l~~~l~~~~~~~~~i~p~~~~~~l~~~~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~~~i~~~F~ 109 (337)
..++.+|+++|..|..++ .+++..+|.+.+ .+..+....|||.|||.+.|.|.|+.....+. -...+..+|-
T Consensus 234 dSValaLQr~Fynlq~~~---~PvdTteltrsf---gWds~dsf~QHDiqEfnrVl~DnLEksmrgt~--VEnaln~ifV 305 (1089)
T COG5077 234 DSVALALQRLFYNLQTGE---EPVDTTELTRSF---GWDSDDSFMQHDIQEFNRVLQDNLEKSMRGTV--VENALNGIFV 305 (1089)
T ss_pred chHHHHHHHHHHHHhccC---CCcchHHhhhhc---CcccchHHHHHhHHHHHHHHHHHHHHhhcCCh--hhhHHhHHHH
Confidence 458999999999999885 689999999877 36788889999999999999999998765443 2334788999
Q ss_pred CeEeeeeecCCCcchhHhhhhhccccccCceeeeeecceeeeccCCCCCCccccccccCCCcccHHHHHhhhcccc----
Q psy1343 110 GSMKVKTRKIPPVELEEKVRQRLLLTEEYKETETESPFLYLTCDLPPPPLFKDEVLENIIPQVNLYTILTKFNNES---- 185 (337)
Q Consensus 110 g~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~s~~~e~f~~lsl~ip~~~~~~~~~~~~~~~~~sl~~~L~~~~~~~---- 185 (337)
|++. +-+.|-.-..++.+.|.||++.|++.... +|+|.++.|.+.|
T Consensus 306 gkmk----------------syikCvnvnyEsarvedfwdiqlNvK~~k--------------nLqeSfr~yIqvE~l~G 355 (1089)
T COG5077 306 GKMK----------------SYIKCVNVNYESARVEDFWDIQLNVKGMK--------------NLQESFRRYIQVETLDG 355 (1089)
T ss_pred HHhh----------------ceeeEEEechhhhhHHHHHHHHhcccchh--------------hHHHHHHHhhhheeccC
Confidence 9998 56778888889999999999999998764 6888888887655
Q ss_pred --hhhhcccc-cceeEEEEeecCCCceEEEEeeeccC--CcccccCCceEeeCCCCCCCCCCCCchhhhhcchhhhhhhh
Q psy1343 186 --EKEYKTYK-ENFLKRFEITSLPPYLILYVKRFTKN--TFFVEKNPTIVNFPVKNVDFGDILTPEVKAKYESTMYDLVK 260 (337)
Q Consensus 186 --~~~c~~~~-~~~~k~~~i~~lP~~Lii~l~Rf~~~--~~~~~K~~~~v~fp~~~Ldl~~~~~~~~~~~~~~~~~~~~~ 260 (337)
|-.|..++ +.|.|-.-+.++||+|.+|||||.++ .....|++...+|| ..+||.+|+..+...+.
T Consensus 356 dN~Y~ae~~GlqdAkKGViFeSlPpVlhlqLKRFeyDfe~d~mvKINDryEFP-~eiDl~pfld~da~kse--------- 425 (1089)
T COG5077 356 DNRYNAEKHGLQDAKKGVIFESLPPVLHLQLKRFEYDFERDMMVKINDRYEFP-LEIDLLPFLDRDADKSE--------- 425 (1089)
T ss_pred CcccccccccchhhccceeeccCchHHHHHHHHhccccccCceeeecccccCc-chhccccccCchhhhhc---------
Confidence 44454444 88999999999999999999999864 34667999999999 58999999988764432
Q ss_pred ccCCCcceeEeEEEEeecCCCCCeEEEEEEeCCCCcEEEecCCcccccCcccccc----------------------CCc
Q psy1343 261 AKYESTMYDLVANIVHDGEPSNGTYRVHLYHKGIGKWYEIQDLHVTDILPQMITL----------------------TEA 318 (337)
Q Consensus 261 ~~~~~~~Y~L~avi~H~G~~~~GHY~a~vk~~~~~~W~~~nD~~V~~v~~~~v~~----------------------~~a 318 (337)
.+...|.|+||++|.|+++.|||+|++|-..+|+||+|||++|+.+...+|+. -.|
T Consensus 426 --n~d~vY~LygVlVHsGDl~~GHyYallKpe~dg~WykfdDtrVtrat~kevleeNfGgd~~~~~k~r~~~~~kRfmsA 503 (1089)
T COG5077 426 --NSDAVYVLYGVLVHSGDLHEGHYYALLKPEKDGRWYKFDDTRVTRATEKEVLEENFGGDHPYKDKIRDHSGIKRFMSA 503 (1089)
T ss_pred --ccCcEEEEEEEEEeccccCCceEEEEeccccCCCceeecceehhhHHHHHHHHHhcCCCCCCcccccCCchhhhhhhh
Confidence 15699999999999999999999999997778999999999999999888873 467
Q ss_pred EEEEEEecCC
Q psy1343 319 YIQIYELRTT 328 (337)
Q Consensus 319 YiLfY~r~~~ 328 (337)
|||+|-|++.
T Consensus 504 YmLvYlRks~ 513 (1089)
T COG5077 504 YMLVYLRKSM 513 (1089)
T ss_pred heeeeehHhH
Confidence 9999999874
No 33
>KOG4598|consensus
Probab=100.00 E-value=6e-36 Score=279.97 Aligned_cols=251 Identities=21% Similarity=0.305 Sum_probs=202.2
Q ss_pred CCCCChHHHHHHHHHhccCCCCcCCCCCHHHHHHHHHHHHHHHhccCCCCCCCcceeccCCeEeeeeecCCCcchhHhhh
Q psy1343 50 KSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDSSIVYKTFLGSMKVKTRKIPPVELEEKVR 129 (337)
Q Consensus 50 ~~~i~p~~~~~~l~~~~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~~~i~~~F~g~~~~~~~~~~~~~~~~~~~ 129 (337)
+..+....|-+.++ +..-...+|||.||+-+.++|+|+...+.++ ....|++++.|++.
T Consensus 121 ~~~~et~dlt~sfg---w~s~ea~~qhdiqelcr~mfdalehk~k~t~--~~~li~~ly~g~m~---------------- 179 (1203)
T KOG4598|consen 121 NDSLETKDLTQSFG---WTSNEAYDQHDVQELCRLMFDALEHKWKGTE--HEKLIQDLYRGTME---------------- 179 (1203)
T ss_pred cccccchhhHhhcC---CCcchhhhhhhHHHHHHHHHHHHHhhhcCch--HHHHHHHHhcchHH----------------
Confidence 45566666666552 3344568999999999999999998776554 34579999999998
Q ss_pred hhccccccCceeeeeecceeeeccCCCCCCccccccccCCCcccHHHHHhhhcccc---------hhhhcccccceeEEE
Q psy1343 130 QRLLLTEEYKETETESPFLYLTCDLPPPPLFKDEVLENIIPQVNLYTILTKFNNES---------EKEYKTYKENFLKRF 200 (337)
Q Consensus 130 ~~~~C~~C~~~s~~~e~f~~lsl~ip~~~~~~~~~~~~~~~~~sl~~~L~~~~~~~---------~~~c~~~~~~~~k~~ 200 (337)
.-+.|..|+.++++.+.|++|.|++.+-.. +...-+++++|..|..++ |.+|+.+ +.|.|-.
T Consensus 180 d~v~cl~c~~e~~~~d~fld~pl~v~pfg~--------~~ay~sieeal~afvqpe~ldg~nqy~ce~ck~k-~dahkgl 250 (1203)
T KOG4598|consen 180 DFVACLKCGRESVKTDYFLDLPLAVKPFGA--------IHAYKSVEEALTAFVQPELLDGSNQYMCENCKSK-QDAHKGL 250 (1203)
T ss_pred HHHHHHHcCccccccceeecccccccCCcc--------hhhhhhHHHHHHHhcChhhcCCccHHHHhhhhhh-hhhhcCc
Confidence 788999999999999999999888754321 111348999999998876 9999987 9999999
Q ss_pred EeecCCCceEEEEeeec--cCCcccccCCceEeeCCCCCCCCCCCCchhhhhcchh----------hhhh----------
Q psy1343 201 EITSLPPYLILYVKRFT--KNTFFVEKNPTIVNFPVKNVDFGDILTPEVKAKYEST----------MYDL---------- 258 (337)
Q Consensus 201 ~i~~lP~~Lii~l~Rf~--~~~~~~~K~~~~v~fp~~~Ldl~~~~~~~~~~~~~~~----------~~~~---------- 258 (337)
.|..+|-+|+||||||+ |+.+.+.|++.++.|| +.|||..|+..+......+. .++.
T Consensus 251 ~~~~fpy~lt~~lkrfdfdy~tmhriklnd~~tfp-~~l~ln~~in~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~n~~ 329 (1203)
T KOG4598|consen 251 RITQFPYLLTIQLKRFDFDYNTMHRIKLNDKMTFP-DVLDLNDYVNKEKRSTTSSAWQQIGKNKSENEEDDMELGSPNPK 329 (1203)
T ss_pred eeeccceeeEEeeecccccchheeeeeecccccCc-ccccHHHhhhhccCCcchhHhhhcccccccccccccccCCCCcc
Confidence 99999999999999977 5678889999999999 89999999765432211110 0000
Q ss_pred -------------------------------hhccCCCcceeEeEEEEeecCCCCCeEEEEEEeCCCCcEEEecCCcccc
Q psy1343 259 -------------------------------VKAKYESTMYDLVANIVHDGEPSNGTYRVHLYHKGIGKWYEIQDLHVTD 307 (337)
Q Consensus 259 -------------------------------~~~~~~~~~Y~L~avi~H~G~~~~GHY~a~vk~~~~~~W~~~nD~~V~~ 307 (337)
.....+++.|+|+||.+|.|++.+|||+||||+..+++||+|||.+|+-
T Consensus 330 ~~~~~~~s~~~~~~~~n~~~g~~~~~~~~~~~~~~sg~~~yelf~imihsg~a~gghy~ayik~~d~~~w~~fnd~~v~~ 409 (1203)
T KOG4598|consen 330 RCTPGVQSPNRYQGSENVCVGQPIDHAAVDDIVKTSGDNVYELFSVMVHSGNAAGGHYFAYIKNLDQDRWYVFNDTRVDF 409 (1203)
T ss_pred cCcccccCcccccCccccccCCcCchhhhhhHhhcCCccHHHhhhhheecCCCCCceeeeeecccCcCceEEecCccccc
Confidence 2355678999999999999999999999999999999999999999999
Q ss_pred cCcccccc-------------CCcEEEEEEecCCCCC
Q psy1343 308 ILPQMITL-------------TEAYIQIYELRTTPSP 331 (337)
Q Consensus 308 v~~~~v~~-------------~~aYiLfY~r~~~~~~ 331 (337)
++..++.. .+||||+|+|.+..-.
T Consensus 410 ~t~~~i~~sfgg~~~~~~~s~tnaymlmyr~id~krn 446 (1203)
T KOG4598|consen 410 ATPLEIEKSFGGHPSGWNQSNTNAYMLMYRRIDPKRN 446 (1203)
T ss_pred cCHHHHHHhhCCCCCCccccCcchhhhhhhhcCcccc
Confidence 98877762 7899999999886543
No 34
>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase
Probab=99.98 E-value=1.9e-31 Score=242.62 Aligned_cols=256 Identities=21% Similarity=0.311 Sum_probs=209.1
Q ss_pred CCCChHHHHHhhccccccccCCCCCCCchHHHHHHHHHHHHHh-CCCCCCCCCChHHHHHHHHHhccCCCCcCCCCCHHH
Q psy1343 2 LCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLW-NPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPID 80 (337)
Q Consensus 2 L~~~~~l~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~-~~~~~~~~i~p~~~~~~l~~~~~~~f~~~~QqDa~E 80 (337)
|+.+|++|+.++... . +....||+|+|+.||+.|. .++ .....+..|+++++.. .....-+.|+|+++
T Consensus 19 l~f~~~~r~~~l~h~--~------c~~e~cL~cELgfLf~ml~~~~~--g~~cq~sNflr~l~~~-~~a~~l~~~~~iq~ 87 (295)
T PF13423_consen 19 LYFIPPLRNFLLSHL--E------CPKEFCLLCELGFLFDMLDSKAK--GINCQASNFLRALSWI-PEAAALGLQQDIQS 87 (295)
T ss_pred HHhCHHHHHHHHhCc--C------CCccccHHHHHHHHHHHhhhhcC--CCcChHHHHHHHHhcC-HHHHhcchhHHHHH
Confidence 678999999998877 2 3344799999999999999 766 6788999999999764 22344566999999
Q ss_pred HHHHHHHHHHHHhccCCC-----------CCCCcceeccCCeEeeeeecCCCcchhHhhhhhccccccCceeeeeeccee
Q psy1343 81 FLSWFLNTLHRALNGTKK-----------KDSSIVYKTFLGSMKVKTRKIPPVELEEKVRQRLLLTEEYKETETESPFLY 149 (337)
Q Consensus 81 fl~~ll~~l~~~~~~~~~-----------~~~~~i~~~F~g~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~s~~~e~f~~ 149 (337)
|++|||++|+.++..... ...+.|.++|+.... ....|..|+..+.+.+....
T Consensus 88 ~~~Fll~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~----------------~~~~c~~c~~~~~~~~~~~~ 151 (295)
T PF13423_consen 88 LNRFLLEQLSMELLTFKPDIFHTSENSSSSPESSISQLFGTSFE----------------TTIRCTSCGHESVKESSTLV 151 (295)
T ss_pred HHHHHHHHHhHHHHhcCcccccccccccCCCcchHHHHhCccee----------------eeecccccCCeEEeecceee
Confidence 999999999999876543 235678999999988 55679999999999999999
Q ss_pred eeccCCCCCCccccccccCCCcccHHHHHhhhccc------chhhhcccccceeEEEEeecCCCceEEEEeeeccCCccc
Q psy1343 150 LTCDLPPPPLFKDEVLENIIPQVNLYTILTKFNNE------SEKEYKTYKENFLKRFEITSLPPYLILYVKRFTKNTFFV 223 (337)
Q Consensus 150 lsl~ip~~~~~~~~~~~~~~~~~sl~~~L~~~~~~------~~~~c~~~~~~~~k~~~i~~lP~~Lii~l~Rf~~~~~~~ 223 (337)
+.|..|.... ..++.++|+.++.. .|.+|+.. +....+..|.++|+||.|+++|+..+..+.
T Consensus 152 ~~l~yp~~~~-----------~~tf~~~Le~sl~~e~~~~a~C~~C~~~-~~~~~~r~i~~LPpVL~In~~~~~~~~~w~ 219 (295)
T PF13423_consen 152 LDLPYPPSNS-----------NVTFSQVLEHSLNREQQTRAWCEKCNKY-QPTEQRRTIRSLPPVLSINLNRYSEEEFWP 219 (295)
T ss_pred eeccCCCCCc-----------cchHHHHHHHHHhhcccccccccccccc-cceeeeeeccCCCcEEEEEccCCCcccccc
Confidence 9888887321 46899999988763 49999988 888899999999999999999999776668
Q ss_pred ccCCceEeeCCCCCCCCCCCCchhhhhcchhhhhhhhccCCCcceeEeEEEEeecC-CCCCeEEEEEEeCC--CCcEEEe
Q psy1343 224 EKNPTIVNFPVKNVDFGDILTPEVKAKYESTMYDLVKAKYESTMYDLVANIVHDGE-PSNGTYRVHLYHKG--IGKWYEI 300 (337)
Q Consensus 224 ~K~~~~v~fp~~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avi~H~G~-~~~GHY~a~vk~~~--~~~W~~~ 300 (337)
.|+...+.+| ..+++..++..+...... ......+|+|.|+|+|.|+ .++|||||+||... +.+||+|
T Consensus 220 ~~~~~~~~ip-~~i~~~~~~~~~~~~~~~--------~~~~~~~Y~L~~~V~~i~~~~~~~HlVs~vrv~~~~~~~W~lF 290 (295)
T PF13423_consen 220 KKNWLKIWIP-PSINLPHFIADDSQSDLE--------GESGIFKYELRSMVCHIGDSIESGHLVSLVRVGPSDDSQWYLF 290 (295)
T ss_pred cccCCceecc-eeeecccccccccccccc--------CCCCceEEEEEEEEEEecCCCCCCceEEEEEcCCCCCCcEEEE
Confidence 8999999999 469988887654322110 2237899999999999998 69999999999963 3689999
Q ss_pred cCCcc
Q psy1343 301 QDLHV 305 (337)
Q Consensus 301 nD~~V 305 (337)
||..|
T Consensus 291 NDflV 295 (295)
T PF13423_consen 291 NDFLV 295 (295)
T ss_pred CcEeC
Confidence 99876
No 35
>KOG1864|consensus
Probab=99.97 E-value=5.9e-31 Score=253.57 Aligned_cols=248 Identities=21% Similarity=0.303 Sum_probs=194.5
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHhccCCCCcCCCCCHHHHHHHHHHHHHHHhccCCC-------------
Q psy1343 32 LVQRFGELMRKLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKK------------- 98 (337)
Q Consensus 32 l~~~l~~l~~~l~~~~~~~~~i~p~~~~~~l~~~~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~~~------------- 98 (337)
+...+..++...-........+.|..++..+++. +..|..+.|||||||+.++++.+++.+.....
T Consensus 280 ~~~~l~~~~~~~~~~~~~~~~i~p~~~~~~~~~~-~~~f~~~~qQda~eF~~~l~~~~~e~~~~~~~~~~~~~~~~~~~g 358 (587)
T KOG1864|consen 280 LLTCLLDLFSSISSRKKLVGRISPTRFISDLIKE-NELFTNGMQQDAHEFLNFLLNEISETLERESSGTTTKVSPKESDG 358 (587)
T ss_pred HHHHhhhhccchhhhcccccccCcchhhhhhhhc-CCccCchhhccHHHHhhhhccchhhhhhhhccCCcccccccCCCC
Confidence 3444444444433322224578999999999886 89999999999999999999999887643220
Q ss_pred -----------------CCCCcceeccCCeEeeeeecCCCcchhHhhhhhccccccCceeeeeecceeeeccCCCCCCcc
Q psy1343 99 -----------------KDSSIVYKTFLGSMKVKTRKIPPVELEEKVRQRLLLTEEYKETETESPFLYLTCDLPPPPLFK 161 (337)
Q Consensus 99 -----------------~~~~~i~~~F~g~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~s~~~e~f~~lsl~ip~~~~~~ 161 (337)
.....+.++|.|.+..+ ..|..|...+.+.+.|.+++++++..-
T Consensus 359 n~~~~~~~~~~~~~~~~~~~~~v~~lf~g~l~~e----------------t~Clsc~t~T~~de~f~D~~~~v~~de--- 419 (587)
T KOG1864|consen 359 NSSTSAASWTNKGHHKSLRENWVSKLFQGILTNE----------------TRCLSCETITSRDEGFLDLSVAVEIDE--- 419 (587)
T ss_pred ccccccccccccccccccchhHHHHhhcCeeeee----------------eeeccccccccccccccccceeccccc---
Confidence 13456888999999954 469999999999999999999998431
Q ss_pred ccccccCCCcccHHHHHhhhcccc---------hhhhcccccceeEEEEeecCCCceEEEEeeeccCCc--ccccCCceE
Q psy1343 162 DEVLENIIPQVNLYTILTKFNNES---------EKEYKTYKENFLKRFEITSLPPYLILYVKRFTKNTF--FVEKNPTIV 230 (337)
Q Consensus 162 ~~~~~~~~~~~sl~~~L~~~~~~~---------~~~c~~~~~~~~k~~~i~~lP~~Lii~l~Rf~~~~~--~~~K~~~~v 230 (337)
..++..||..|...+ |.+|... +.|.+++.+.++|.+|+||||||.+... ...|+...|
T Consensus 420 ---------~~si~~~l~~~~~~e~l~g~nky~c~~c~s~-qeae~~l~~k~lp~~L~l~Lkrfk~~~~~~~~~kl~~~v 489 (587)
T KOG1864|consen 420 ---------NTSITNLLKSFSSTETLSGENKYSCENCCSL-QEAERRLKIKKLPYVLTLHLKRFKYSEQQNRYTKLLYRV 489 (587)
T ss_pred ---------cccHHHHHHHhcchhhccCCCcccccccCch-hhHHHhccccCCcceeeeehhcccccccccccccccccc
Confidence 247888888766554 8889888 9999999999999999999999998743 446889999
Q ss_pred eeCCCCCCCCCCCCchhhhhcchhhhhhhhccCCCcceeEeEEEEeecC-CCCCeEEEEEEeCCCCcEEEecCCcccccC
Q psy1343 231 NFPVKNVDFGDILTPEVKAKYESTMYDLVKAKYESTMYDLVANIVHDGE-PSNGTYRVHLYHKGIGKWYEIQDLHVTDIL 309 (337)
Q Consensus 231 ~fp~~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avi~H~G~-~~~GHY~a~vk~~~~~~W~~~nD~~V~~v~ 309 (337)
.||+ .|.+.....+... ....|.|+|||+|.|. .+.|||+||+|.. +-.|++|||+.|.+++
T Consensus 490 ~~pl-el~l~~~~~~~~~---------------~~~~Y~L~avVvH~G~~p~~GHYia~~r~~-~~nWl~fdD~~V~~~s 552 (587)
T KOG1864|consen 490 VFPL-ELRLKDTLKDDNN---------------PDRKYDLVAVVVHLGSTPNRGHYVAYVKSL-DFNWLLFDDDNVEPIS 552 (587)
T ss_pred cccc-ceeeccccccccC---------------ccceeeEEEEEEeccCCCCCcceEEEEeeC-CCCceecccccccccC
Confidence 9995 5777665554431 2469999999999998 6999999999995 3339999999999999
Q ss_pred ccccc---cCCcEEEEEEec
Q psy1343 310 PQMIT---LTEAYIQIYELR 326 (337)
Q Consensus 310 ~~~v~---~~~aYiLfY~r~ 326 (337)
.+.|. +..+|+++|...
T Consensus 553 ~~~v~~~~~~s~~~~~~~~~ 572 (587)
T KOG1864|consen 553 EEPVSEFTGSSGDTLFYYVQ 572 (587)
T ss_pred cchhhhccCCCccceeeeEE
Confidence 98887 466677776553
No 36
>KOG1863|consensus
Probab=99.96 E-value=1.3e-30 Score=270.10 Aligned_cols=275 Identities=23% Similarity=0.272 Sum_probs=224.6
Q ss_pred CCCCChHHHHHhhccccccccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHhccCCCCcCCCCCHHH
Q psy1343 1 ALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPID 80 (337)
Q Consensus 1 ~L~~~~~l~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~i~p~~~~~~l~~~~~~~f~~~~QqDa~E 80 (337)
+|++++.||+-+........ ...+ ...+..+|+.||..|..++ ..+++|.++...+... ....++|||+||
T Consensus 188 ~lf~~~~FR~~Vy~~~~~~~-~~~~---~~~v~~~lq~lF~~LQ~s~--~k~Vdt~~~~~~~~~~---~~~~~~QqDvqE 258 (1093)
T KOG1863|consen 188 VLFLIPEFRRAVYSIPPFTG-HEDP---RRSIPLALQRLFYELQMSK--RKYVDTSELTKSLGWD---SNDSFEQQDVQE 258 (1093)
T ss_pred HHHccHHHHHHHhcCCCCCC-cccc---cchHHHHHHHHHHHHhhcC--CCCcCchhhhhhhhcc---cccHHhhhhHHH
Confidence 47899999998877663111 1111 2348999999999999988 7799999999999543 256789999999
Q ss_pred HHHHHHHHHHHHhccCCCCCCCcceeccCCeEeeeeecCCCcchhHhhhhhccccccCceeeeeecceeeeccCCCCCCc
Q psy1343 81 FLSWFLNTLHRALNGTKKKDSSIVYKTFLGSMKVKTRKIPPVELEEKVRQRLLLTEEYKETETESPFLYLTCDLPPPPLF 160 (337)
Q Consensus 81 fl~~ll~~l~~~~~~~~~~~~~~i~~~F~g~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~s~~~e~f~~lsl~ip~~~~~ 160 (337)
|+..|+|.|++.+.... ....+.++|.|++. +.+.|..|...+.+.|.|+++.|++.+..
T Consensus 259 f~~~l~d~LE~~~~~~~--~~~~l~~lf~g~~~----------------~~i~c~~~~~~s~r~e~f~d~ql~~~g~~-- 318 (1093)
T KOG1863|consen 259 FLTKLLDWLEDSMIDAK--VENTLQDLFTGKMK----------------SVIKCIDVDFESSRSESFLDLQLNGKGVK-- 318 (1093)
T ss_pred HHHHHHHHHHhhccchh--hhhhhhhhhcCCcc----------------eEEEEEeeeeeccccccccCccccccchh--
Confidence 99999999999886655 35578999999988 66789999999999999999999987653
Q ss_pred cccccccCCCcccHHHHHhhhcccc--------hhhhcccccceeEEEEeecCCCceEEEEeeeccC--CcccccCCceE
Q psy1343 161 KDEVLENIIPQVNLYTILTKFNNES--------EKEYKTYKENFLKRFEITSLPPYLILYVKRFTKN--TFFVEKNPTIV 230 (337)
Q Consensus 161 ~~~~~~~~~~~~sl~~~L~~~~~~~--------~~~c~~~~~~~~k~~~i~~lP~~Lii~l~Rf~~~--~~~~~K~~~~v 230 (337)
+|.++|+.|+..+ |..|... +.+.+...+.++|++|.|+|+||.++ .....|++...
T Consensus 319 ------------nl~~sf~~y~~~E~l~gdn~~~~~~~~~-~~a~k~~~f~~lPpvl~~qL~Rf~~~~~~~~~~Ki~d~~ 385 (1093)
T KOG1863|consen 319 ------------NLEDSLHLYFEAEILLGDNKYDAECHGL-QDAKKGVLFDSLPPVLFIQLMRFEYDFSTGQKIKINDKF 385 (1093)
T ss_pred ------------hHHHHHHHhhhHHHhcCCccccccccch-hhhhcceeeccCCchhhhhhhheeeeccCCceeehhhcc
Confidence 5888888888754 5566655 88888899999999999999999975 45777999999
Q ss_pred eeCCCCCCCCCCCCc-hhhhhcchhhhhhhhccCCCcceeEeEEEEeecCCCCCeEEEEEEeCCCCcEEEecCCcccccC
Q psy1343 231 NFPVKNVDFGDILTP-EVKAKYESTMYDLVKAKYESTMYDLVANIVHDGEPSNGTYRVHLYHKGIGKWYEIQDLHVTDIL 309 (337)
Q Consensus 231 ~fp~~~Ldl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Y~L~avi~H~G~~~~GHY~a~vk~~~~~~W~~~nD~~V~~v~ 309 (337)
+|| ..|+|.+|+.. ....+. ..+.|+|.||++|.|..++|||++|++....++|++|||..|+.++
T Consensus 386 ~fp-~~i~~d~~~~~~~~~~~~------------~~~~y~l~~v~vh~g~~~~ghy~~~i~~~~~~~w~kfdd~~v~~~~ 452 (1093)
T KOG1863|consen 386 EFP-LIIDMDRYLSRFKAEESE------------RSAVYSLHAVLVHSGDAHSGHYVAYINPKLDGKWVKFDDLVVTVVS 452 (1093)
T ss_pred CCc-cccccchhccccchhhhh------------ccceeccchhhcccccccCccceeeecchhhccceeccCceeeecc
Confidence 999 68999999875 211111 2369999999999888999999999997778999999999999998
Q ss_pred cccccc----------------CCcEEEEEEecCCCC
Q psy1343 310 PQMITL----------------TEAYIQIYELRTTPS 330 (337)
Q Consensus 310 ~~~v~~----------------~~aYiLfY~r~~~~~ 330 (337)
..++.. ..||+|+|.|.+..+
T Consensus 453 ~~~~l~~~~g~~~~~~~~~~~~~~~~~lv~~~~s~~~ 489 (1093)
T KOG1863|consen 453 EKEALEQNYGTEEIELSSTADFKNAYMLVYIRDSCES 489 (1093)
T ss_pred HHHHHHhhCCCcchhhhcccccCCcceEEEEecCcHH
Confidence 666552 228999999987653
No 37
>KOG1872|consensus
Probab=99.92 E-value=8.3e-26 Score=205.73 Aligned_cols=293 Identities=22% Similarity=0.195 Sum_probs=201.7
Q ss_pred CCCCChHHHHHhhccccccccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHhccCCCCc------CC
Q psy1343 1 ALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEMLQAVVLWSRKQFQF------TE 74 (337)
Q Consensus 1 ~L~~~~~l~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~i~p~~~~~~l~~~~~~~f~~------~~ 74 (337)
||..+|+++.-+............... ...+..+++.+|+.|.++ +.+.|..+++.++++ .|+|.. +.
T Consensus 123 ~lk~v~el~~~~s~~~~~~~~~~t~~~-a~~i~~~mR~~f~~~~~~----~~v~pi~llqtl~~~-~Pqfa~~~~~g~~~ 196 (473)
T KOG1872|consen 123 CLKGVPELPDALSLYKRKRGRGDTWER-RRRISIETRTCFRPLCEK----GAVAPINLLQTLSSQ-YPQFAEWVEYGIYM 196 (473)
T ss_pred hhhcCccCcchhhccchhccCCchhhh-hhhHHHHHHHHHHhhhcc----CCcchHHHHHHHHHH-hHHHHHHhhhhhHH
Confidence 455666666655444433333222111 356888899999998776 489999999999988 577755 89
Q ss_pred CCCHHHHHHHHHHHHHHHhccCCCC--CCCcceeccCCeEeeeeecCCCcchhHhhhhhccccccCceeee--eecceee
Q psy1343 75 QSDPIDFLSWFLNTLHRALNGTKKK--DSSIVYKTFLGSMKVKTRKIPPVELEEKVRQRLLLTEEYKETET--ESPFLYL 150 (337)
Q Consensus 75 QqDa~Efl~~ll~~l~~~~~~~~~~--~~~~i~~~F~g~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~s~~--~e~f~~l 150 (337)
||||.|.+..++-.+++.+...... ....+..+|++.+. .++.|..-...... .|.|+.|
T Consensus 197 qqda~ec~~~~m~~l~~~~~~~~~~~~~~~~~d~~f~~~~~----------------~t~~~~e~e~~~~~~~~E~~~~L 260 (473)
T KOG1872|consen 197 QQDAAECWMEEPGMLTEALTVATEAPCLEAEAAAGFGAEFS----------------TTMSCSEGEDEGGGAGRELVDQL 260 (473)
T ss_pred HHHHhHhHHHhhhheeccccccccccchhHHHHHhhccccc----------------cceeeccCccccccccccccccc
Confidence 9999999999999999887554322 23456778888887 44556665554333 6778878
Q ss_pred eccCCCCCCccccccccCCCcccHHHHHhhhcccchhhhcccccceeEEEEeecCCCceEEEEeeeccCC--cccccCCc
Q psy1343 151 TCDLPPPPLFKDEVLENIIPQVNLYTILTKFNNESEKEYKTYKENFLKRFEITSLPPYLILYVKRFTKNT--FFVEKNPT 228 (337)
Q Consensus 151 sl~ip~~~~~~~~~~~~~~~~~sl~~~L~~~~~~~~~~c~~~~~~~~k~~~i~~lP~~Lii~l~Rf~~~~--~~~~K~~~ 228 (337)
++.+-....+. ...|..-|..-.....+.-+.. ....|.+.|.++|.||+|+.-||.+.. +...|+-.
T Consensus 261 ~c~i~~~~~~~---------k~Gl~~~~~e~~~K~s~~lgr~-a~y~k~~~isrlP~ylTvq~vrf~~k~k~~~~akil~ 330 (473)
T KOG1872|consen 261 KCIINKTVHDM---------RFGLKSGLSEEIQKISSILGRP-AAYQKVMYISRLPEYLTVQEVRFFSKAKIMVVAKILN 330 (473)
T ss_pred ceEEeeeechh---------hhhhhhhhhhhhhccCcccCCC-hHHHHHhHhhcCcccceEEEEEEEeccccchHHHHHH
Confidence 77765433221 0112222222111111222222 445677789999999999999998654 34557777
Q ss_pred eEeeCCCCCCCCCCCCchhhhhcchhhhhh----------------------------------hhccCC-CcceeEeEE
Q psy1343 229 IVNFPVKNVDFGDILTPEVKAKYESTMYDL----------------------------------VKAKYE-STMYDLVAN 273 (337)
Q Consensus 229 ~v~fp~~~Ldl~~~~~~~~~~~~~~~~~~~----------------------------------~~~~~~-~~~Y~L~av 273 (337)
.|.||+ .||..++|+++.+.+........ ...... ...|+|+||
T Consensus 331 ~V~fP~-~ld~~d~ct~el~~k~~~~r~k~r~~edkk~~~~~~~k~~~~~~~~~~~~~e~~~~~~~~~s~~~g~y~l~~v 409 (473)
T KOG1872|consen 331 AVNFPK-DLDQQDLCTPELKKKLLCRRKKHRKVEDKKKEEDVMPKVKGAQERLKEVPLEGMYNKSGGKSRNSGLYDLQLV 409 (473)
T ss_pred hccChh-hhhHHHhhCHHhhcCccchHHHHHHHHhcCCchhhcccccCcCcccccccccchhccccccccccceeeeeEe
Confidence 999995 79999999887654432110000 112222 678999999
Q ss_pred EEeecC-CCCCeEEEEEEeCCCCcEEEecCCcccccCcccccc-------CCcEEEEEEecC
Q psy1343 274 IVHDGE-PSNGTYRVHLYHKGIGKWYEIQDLHVTDILPQMITL-------TEAYIQIYELRT 327 (337)
Q Consensus 274 i~H~G~-~~~GHY~a~vk~~~~~~W~~~nD~~V~~v~~~~v~~-------~~aYiLfY~r~~ 327 (337)
|.|.|. ..+|||+||+|.. .+.|++|||+.|+-+..+.+.+ ..||||.|+-+.
T Consensus 410 ithkgrss~sghy~aw~r~s-~~~w~~fdd~~vs~v~~e~i~~lsgggd~~~ayvllyk~~~ 470 (473)
T KOG1872|consen 410 ITHKGRSSKSGHYVAWNRVS-EDKWGHFDDDMVSFVLGETILSLSGGGDWHSAYVLLYKARV 470 (473)
T ss_pred eeccccccCCCcceEEEecc-CCceeeccccccccccccceeeecCCCccchhhheeecccc
Confidence 999997 6999999999996 6799999999999999988884 889999998654
No 38
>KOG1871|consensus
Probab=99.91 E-value=1.7e-24 Score=192.40 Aligned_cols=234 Identities=20% Similarity=0.250 Sum_probs=178.9
Q ss_pred CCCChHHHHHHHHHhccCCC---CcCCCCCHHHHHHHHHHHHHHHhccCCC-----------------------------
Q psy1343 51 SHVSPHEMLQAVVLWSRKQF---QFTEQSDPIDFLSWFLNTLHRALNGTKK----------------------------- 98 (337)
Q Consensus 51 ~~i~p~~~~~~l~~~~~~~f---~~~~QqDa~Efl~~ll~~l~~~~~~~~~----------------------------- 98 (337)
.++-|..+...+.. .++| ..+.|.||.|||.++||.||+++-...+
T Consensus 119 dav~~d~~~~~l~t--~~~~e~~~~g~qedAeefl~~~ld~lhee~~~v~~~~~~~n~e~t~~~~i~~~n~~n~~s~~e~ 196 (420)
T KOG1871|consen 119 DAVKPDPIYLDLLT--MSRFESLQVGKQEDAEEFLLDNLDFLHEESSEVPTELVPPNDEFTPRGLINNGNLCNLDSTEEA 196 (420)
T ss_pred ccccCCchhhhccc--CCchhhccccccccHHHHHHHHHhhhhHHHHhhhhhhcCCcccccccccccccccccccchhhc
Confidence 35556666666644 3455 4489999999999999999999743210
Q ss_pred ------------------------CCCCcceeccCCeEeeeeecCCCcchhHhhhhhccccccCceeeeeecceeeeccC
Q psy1343 99 ------------------------KDSSIVYKTFLGSMKVKTRKIPPVELEEKVRQRLLLTEEYKETETESPFLYLTCDL 154 (337)
Q Consensus 99 ------------------------~~~~~i~~~F~g~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~s~~~e~f~~lsl~i 154 (337)
-..+++.++|+|++++... ..-.+++.+-+||..|.|++
T Consensus 197 ~~~~~~~~~~~gk~~k~~i~r~~~~~~spiS~ifgg~~rs~l~-----------------~~~nkeS~tlqPF~tlqldi 259 (420)
T KOG1871|consen 197 GLSESSGVQLLGKIQKTDIPRADSFVRSPISEIFGGQLRSVLY-----------------QPSNKESATLQPFFTLQLDI 259 (420)
T ss_pred ccccCchhhhcCCcccCccCCCCCcccCcHHHhhcccccccee-----------------ccccccccccCccceeeeee
Confidence 1357799999999996433 23445678999999999999
Q ss_pred CCCCCccccccccCCCcccHHHHHhhhcccchh-----hhcccccceeEEEEeecCCCceEEEEeeeccC-CcccccCCc
Q psy1343 155 PPPPLFKDEVLENIIPQVNLYTILTKFNNESEK-----EYKTYKENFLKRFEITSLPPYLILYVKRFTKN-TFFVEKNPT 228 (337)
Q Consensus 155 p~~~~~~~~~~~~~~~~~sl~~~L~~~~~~~~~-----~c~~~~~~~~k~~~i~~lP~~Lii~l~Rf~~~-~~~~~K~~~ 228 (337)
..... -+.+++++.+...+-. .-+.. ..+.+++.+.++|++|++|++||.+. .+...|+.+
T Consensus 260 q~~~i------------~sv~~ales~~~re~lp~~st~s~~e-V~~s~q~~leklp~vlilhlkrF~ye~tgg~~k~~K 326 (420)
T KOG1871|consen 260 QSEKI------------HSVQDALESLVARESLPGYSTKSGQE-VEASSQTTLEKLPPVLILHLKRFVYEKTGGARKLGK 326 (420)
T ss_pred ecccc------------CCHHHHhhccChhhcccceecCCCCe-echhhhhhHhhcchhhhhhhhHHHHHhccchhhhch
Confidence 65432 3788888877666522 22222 77888999999999999999999987 567789999
Q ss_pred eEeeCCCCCCCCCCCCc-hhhhhcchhhhhhhhccCCCcceeEeEEEEeecC-CCCCeEEEEEEeCCCCcEEEecCCccc
Q psy1343 229 IVNFPVKNVDFGDILTP-EVKAKYESTMYDLVKAKYESTMYDLVANIVHDGE-PSNGTYRVHLYHKGIGKWYEIQDLHVT 306 (337)
Q Consensus 229 ~v~fp~~~Ldl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Y~L~avi~H~G~-~~~GHY~a~vk~~~~~~W~~~nD~~V~ 306 (337)
.|+|| -.+.+..-+-. ..+... ......|+|.||+.|.|. +..|||++-+.+...+.|+.+||..|.
T Consensus 327 ~i~~~-~~l~i~~~~~s~gvk~~~----------~~~~~~yks~~vvyhtgtsatvghYl~dv~~s~~~gw~rIDD~~i~ 395 (420)
T KOG1871|consen 327 KIEYP-WTLKISKNCFSQGLKIRI----------LIATRPYKSLAVVYHTGTSATVGHYLEDVSRSVPSGWQRIDDALIL 395 (420)
T ss_pred hhhcc-ceeeechhhhccccchhh----------hccccccceEEEEEecccccccCceEEeeeecccCceeEeccceee
Confidence 99999 46877654432 111111 115678999999999998 699999999999888899999999999
Q ss_pred ccCccccc----cCCcEEEEEEecC
Q psy1343 307 DILPQMIT----LTEAYIQIYELRT 327 (337)
Q Consensus 307 ~v~~~~v~----~~~aYiLfY~r~~ 327 (337)
.+..++|. +.+||+|+|.+.+
T Consensus 396 ~v~q~dv~~~t~~r~~yllyY~~~d 420 (420)
T KOG1871|consen 396 FVAQEDVEKVTGSRTPYLLYYIEAD 420 (420)
T ss_pred eccHhhhccccCccchheeEeeecC
Confidence 99999998 4899999999864
No 39
>KOG1275|consensus
Probab=99.74 E-value=4.9e-18 Score=164.57 Aligned_cols=287 Identities=16% Similarity=0.128 Sum_probs=183.4
Q ss_pred CCCChHHHHHhhccccccccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHhccCCCCcCCC------
Q psy1343 2 LCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQ------ 75 (337)
Q Consensus 2 L~~~~~l~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~i~p~~~~~~l~~~~~~~f~~~~Q------ 75 (337)
|+.+||+|..++.. .+...+||+|+|+.||..|-.+. .+......|+++++......-.+..-
T Consensus 518 lyfl~~~r~~vl~H---------~C~~e~CL~CELGFLF~Ml~~S~--G~~Cqa~NFlraf~t~~~a~~LG~vl~d~~~~ 586 (1118)
T KOG1275|consen 518 LYFLPPIRSIVLRH---------ICTKEFCLLCELGFLFTMLDSST--GDPCQANNFLRAFRTNPEASALGLVLSDTQIS 586 (1118)
T ss_pred HHhccHHHHHHHcC---------ccchhHHHHHHHHHHHHHHhhhc--CCccchhHHHHHHhhChHhhhhcccccchhhc
Confidence 46788888887766 34456899999999999999887 55899999999997643111111111
Q ss_pred ---------CCHHHHHHHHHHH--------------HHHHhccCCCCCCCcceeccCCeEeeeeecCCCcchhHhhhhhc
Q psy1343 76 ---------SDPIDFLSWFLNT--------------LHRALNGTKKKDSSIVYKTFLGSMKVKTRKIPPVELEEKVRQRL 132 (337)
Q Consensus 76 ---------qDa~Efl~~ll~~--------------l~~~~~~~~~~~~~~i~~~F~g~~~~~~~~~~~~~~~~~~~~~~ 132 (337)
|||..|.....+. ..++.. .+-+....+.+.|+.++. .+.
T Consensus 587 ~~~~~~~liq~~~~~~~set~~~~d~~~~~~~~~s~~~~~~~-~~vn~~~~l~q~F~~~~e----------------~~~ 649 (1118)
T KOG1275|consen 587 GTVNDDVLIQDAEGFISSETSRHLDCQDCRGLQQSESVDGES-FKVNYAPVLQQSFCQEIE----------------KSL 649 (1118)
T ss_pred cccchHHHhhhhhhccchhhhhhhhHHHhhhhhhhhcccCce-eeecchhHHHHHhhhHHH----------------Hhh
Confidence 2333222222211 111100 011234567888888887 556
Q ss_pred cccccCceeeeeecceeeeccCCCCCCccccccccCCCcccHHHHHhh------hcccchhhhcccccceeEEEEeecCC
Q psy1343 133 LLTEEYKETETESPFLYLTCDLPPPPLFKDEVLENIIPQVNLYTILTK------FNNESEKEYKTYKENFLKRFEITSLP 206 (337)
Q Consensus 133 ~C~~C~~~s~~~e~f~~lsl~ip~~~~~~~~~~~~~~~~~sl~~~L~~------~~~~~~~~c~~~~~~~~k~~~i~~lP 206 (337)
.|..|+..+.+......+.+..|...... .+.. .....+.|++ -....|+.|... ++...+..+..+|
T Consensus 650 ~Cg~C~~~~~~~k~l~~~~lsyp~~~~id-~~~~----~~~F~~iL~R~l~l~kn~~~~C~~C~k~-ep~~q~~~vr~LP 723 (1118)
T KOG1275|consen 650 RCGECGDEKQKSKSLLRKVLSYPNVLLID-TLAK----SNNFVEILKRSLSLFKNKQAWCETCTKP-EPTSQKKNVRSLP 723 (1118)
T ss_pred hcccccchhhhhhhhhheeecCCCccchh-hccc----ccchHHHhhhhhhcccccccccccccCC-CCcccccccccCc
Confidence 78888887766667777778777653211 1111 1123333332 223568999887 8888888999999
Q ss_pred CceEEEEeeeccC--CcccccC--CceEeeCCCCCCCCCCCCchhhhhcchh-hh--hhhhccCCCcceeEeEEEEeecC
Q psy1343 207 PYLILYVKRFTKN--TFFVEKN--PTIVNFPVKNVDFGDILTPEVKAKYEST-MY--DLVKAKYESTMYDLVANIVHDGE 279 (337)
Q Consensus 207 ~~Lii~l~Rf~~~--~~~~~K~--~~~v~fp~~~Ldl~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~Y~L~avi~H~G~ 279 (337)
.+|.|...-+... .++..|+ -..|-+| +.+-|...-.........+. .. ..........+|+|.|+|+|+|+
T Consensus 724 d~L~in~~~~~~~~~~~~a~q~~~~~~vWLP-~~~~~~~~k~~~~~v~~~s~~~~~~~~~~d~~~~~vYeL~a~V~~I~d 802 (1118)
T KOG1275|consen 724 DCLSINTCLNVHELVDFWARQNKLLEDVWLP-EWFHMIISKNKAQLVSTISDLDVSPLPDYDEPSAVVYELDAMVHAIGD 802 (1118)
T ss_pred ceeeeeeeccchhhhhhHHHhhccccccccc-hheeEEEecccceeeeeeccccCCCCccccCCceEEEEeeeEEEEecc
Confidence 9999998877643 3344443 4556666 34444322221111110000 00 00112335689999999999999
Q ss_pred C-CCCeEEEEEEeC--------CCCcEEEecCCcccccCcccccc-----CCcEEEEE
Q psy1343 280 P-SNGTYRVHLYHK--------GIGKWYEIQDLHVTDILPQMITL-----TEAYIQIY 323 (337)
Q Consensus 280 ~-~~GHY~a~vk~~--------~~~~W~~~nD~~V~~v~~~~v~~-----~~aYiLfY 323 (337)
- +.+|.|++||.. .+.+||.|||..|++++++|++. +.+-||+|
T Consensus 803 ~~~e~~lVs~Ikv~~~~~~~~~~dsqWylFNDfLV~~ite~EAl~~~~~WKvP~Il~Y 860 (1118)
T KOG1275|consen 803 NENEVNLVSPIKVLRPYHVIKPDDSQWYLFNDFLVSEITEEEALHFDGPWKVPAILYY 860 (1118)
T ss_pred CCCccceEEEEEccCcccccCcCcceeEEEcceeeeeCChHHheEeccCccCcEEEEE
Confidence 5 999999999964 34689999999999999999984 99999999
No 40
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase
Probab=97.94 E-value=2e-05 Score=67.82 Aligned_cols=82 Identities=15% Similarity=0.306 Sum_probs=58.3
Q ss_pred cchhhhcccccceeEEEEeecCCCceEEEEeeeccCCcccccCCceEeeCCCCCCCCCCCCchhhhhcchhhhhhhhccC
Q psy1343 184 ESEKEYKTYKENFLKRFEITSLPPYLILYVKRFTKNTFFVEKNPTIVNFPVKNVDFGDILTPEVKAKYESTMYDLVKAKY 263 (337)
Q Consensus 184 ~~~~~c~~~~~~~~k~~~i~~lP~~Lii~l~Rf~~~~~~~~K~~~~v~fp~~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~ 263 (337)
.-|..|+. ....+++.+.++|+++.+|+- + +-..+.-....|-+
T Consensus 171 ~pCn~C~~--ksQ~rkMvlekv~~vfmLHFV----e-GLP~ndl~~ysF~f----------------------------- 214 (275)
T PF15499_consen 171 GPCNSCNS--KSQRRKMVLEKVPPVFMLHFV----E-GLPHNDLQHYSFHF----------------------------- 214 (275)
T ss_pred CCCcccCC--hHHhHhhhhhcCchhhhhhhh----c-cCCccCCCccceee-----------------------------
Confidence 34777765 455677889999999999963 1 21112222233332
Q ss_pred CCcceeEeEEEEeecCCCCCeEEEEEEeCCCCcEEEecCCc
Q psy1343 264 ESTMYDLVANIVHDGEPSNGTYRVHLYHKGIGKWYEIQDLH 304 (337)
Q Consensus 264 ~~~~Y~L~avi~H~G~~~~GHY~a~vk~~~~~~W~~~nD~~ 304 (337)
.+..|++.+||-..-. --|+++|+++. +|.|..|||-+
T Consensus 215 eg~~Y~Vt~VIQY~~~--~~HFvtWi~~~-dGsWLecDDLk 252 (275)
T PF15499_consen 215 EGCLYQVTSVIQYQAN--LNHFVTWIRDS-DGSWLECDDLK 252 (275)
T ss_pred cCeeEEEEEEEEEecc--CceeEEEEEcC-CCCeEeeccCC
Confidence 5678999999987764 45999999996 88999999976
No 41
>KOG1887|consensus
Probab=96.36 E-value=0.00088 Score=66.54 Aligned_cols=194 Identities=15% Similarity=0.209 Sum_probs=106.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHhccCCC------------------CCCCcceeccCCeEeeeeecCCCcchhHhhhhhccc
Q psy1343 73 TEQSDPIDFLSWFLNTLHRALNGTKK------------------KDSSIVYKTFLGSMKVKTRKIPPVELEEKVRQRLLL 134 (337)
Q Consensus 73 ~~QqDa~Efl~~ll~~l~~~~~~~~~------------------~~~~~i~~~F~g~~~~~~~~~~~~~~~~~~~~~~~C 134 (337)
...-++.++|..++..|++..+.... ...+++.++|+.... .+..|
T Consensus 547 ~~~~~~S~lL~~ll~~l~~~~~~ss~~~~v~~aile~~~~Wk~~er~~l~~~lf~l~~~----------------e~~Sc 610 (806)
T KOG1887|consen 547 KHEGVYSELLSDLLLSLEEVHNASSSAADVVVAILEFWQCWKNPERESLVNRLFTLEEK----------------ERMSC 610 (806)
T ss_pred HhhhhHHHHHHHHHhhhHHHhhhcchhhHHHHHHHhcccccccHHHHHHHHhhhhhhhh----------------hhccc
Confidence 34457788999999999887764321 112345556655544 56679
Q ss_pred cccCceeeeeecceeeeccCCCCCCccccccccCCCcccHHHHHhhhcccchhhhcccc----cceeEEEEeecCCCceE
Q psy1343 135 TEEYKETETESPFLYLTCDLPPPPLFKDEVLENIIPQVNLYTILTKFNNESEKEYKTYK----ENFLKRFEITSLPPYLI 210 (337)
Q Consensus 135 ~~C~~~s~~~e~f~~lsl~ip~~~~~~~~~~~~~~~~~sl~~~L~~~~~~~~~~c~~~~----~~~~k~~~i~~lP~~Li 210 (337)
..|+..+...+ .....+.+...+.. .... -...++.++.|+.--...-..|.... ........|.++|+|.+
T Consensus 611 ~~cr~~~n~pe-qsS~~~~~~a~slr-~~k~--a~~n~~f~~ilk~i~m~~~m~cD~~~gGCgk~n~v~h~is~~P~vft 686 (806)
T KOG1887|consen 611 SKCRRDLNYPE-QSSYGIVIAADSLR-QLKC--AFQNITFEDILKNIRMNDKMLCDKETGGCGKANLVHHILSPCPPVFT 686 (806)
T ss_pred cccccCCCCcc-hhhhhhhccchhhh-hHHH--HhhhhhHHHHHHHhhhhhhhcccccCCCCcchhhhhhhcCCCCCeeE
Confidence 99988655442 22222222222110 0000 00124677777763222222232221 23333445788999999
Q ss_pred EEEeeeccCCcccccC--CceEeeCCCCCCCCCCCCchhhhhcchhhhhhhhccCCCcceeEeEEEEeecCCCCCeEEEE
Q psy1343 211 LYVKRFTKNTFFVEKN--PTIVNFPVKNVDFGDILTPEVKAKYESTMYDLVKAKYESTMYDLVANIVHDGEPSNGTYRVH 288 (337)
Q Consensus 211 i~l~Rf~~~~~~~~K~--~~~v~fp~~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avi~H~G~~~~GHY~a~ 288 (337)
|.|. +..++ .+|. .+...+. ..+|++.....+.. ...+|+|++++.-.+. .++|.|+
T Consensus 687 Ivle-wEk~E--Te~eI~~T~~aL~-teidis~~y~~g~e---------------p~t~yrLVSmv~~~e~--~~~~~C~ 745 (806)
T KOG1887|consen 687 IVLE-WEKSE--TEKEISETTKALA-TEIDISRLYREGLE---------------PNTKYRLVSMVGNHEE--GEEYICF 745 (806)
T ss_pred eeee-hhccc--chHHHHHHHHHHH-hhhhHHHHhhhccC---------------cCceeEEEEEeeeccc--cceEEEe
Confidence 9664 43222 1111 1111122 23555544431111 5789999999976542 6899999
Q ss_pred EEeCCCCcEE--EecCCcccccC
Q psy1343 289 LYHKGIGKWY--EIQDLHVTDIL 309 (337)
Q Consensus 289 vk~~~~~~W~--~~nD~~V~~v~ 309 (337)
... .++|. ..+|..+..+.
T Consensus 746 Aye--~Nrwvs~r~~~~~~e~iG 766 (806)
T KOG1887|consen 746 AYE--PNRWVSLRHEDSQGEVVG 766 (806)
T ss_pred ecc--CCcchhhHHHHHHhhhcc
Confidence 998 47888 99998887774
No 42
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=91.24 E-value=0.26 Score=40.60 Aligned_cols=47 Identities=15% Similarity=0.212 Sum_probs=31.9
Q ss_pred eecC--CCCCeEEEEEEeCCCCcEEEecCCcccccCccccccCCcEEEEEEecCCC
Q psy1343 276 HDGE--PSNGTYRVHLYHKGIGKWYEIQDLHVTDILPQMITLTEAYIQIYELRTTP 329 (337)
Q Consensus 276 H~G~--~~~GHY~a~vk~~~~~~W~~~nD~~V~~v~~~~v~~~~aYiLfY~r~~~~ 329 (337)
|.|. -+.||-+.+.+. .+.||.+||+.+.+.++.- +=+|.|..-+..
T Consensus 130 ~agi~~~g~~Havfa~~t--s~gWy~iDDe~~y~~tPdp-----~~VLvfvp~D~E 178 (193)
T PF05408_consen 130 HAGIFLKGQEHAVFACVT--SDGWYAIDDEDFYPWTPDP-----SDVLVFVPYDQE 178 (193)
T ss_dssp EEEEEEESTTEEEEEEEE--TTCEEEEETTEEEE----G-----GGEEEEEESSSS
T ss_pred hhHheecCCcceEEEEEe--eCcEEEecCCeeeeCCCCh-----hheEEEcccCcc
Confidence 5554 378999999988 5889999999999887633 234666665543
No 43
>PF08715 Viral_protease: Papain like viral protease; InterPro: IPR014827 This family of viral proteases are similar to the papain protease and are required for proteolytic processing of the replicase polyprotein. The structure of this protein has shown it adopts a fold similar to that of de-ubiquitinating enzymes []. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity; PDB: 3MP2_A 3EWP_B 3EWO_B 2FE8_A 3MJ5_B 3EKE_A 3EJF_A 3JZT_H 3ETI_E 3E9S_A.
Probab=90.15 E-value=5.3 Score=36.62 Aligned_cols=36 Identities=14% Similarity=0.081 Sum_probs=20.2
Q ss_pred ChHHHHHHHHHhccCCCCcCCCCCHHHHHHHHHHHHHH
Q psy1343 54 SPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHR 91 (337)
Q Consensus 54 ~p~~~~~~l~~~~~~~f~~~~QqDa~Efl~~ll~~l~~ 91 (337)
+|..|...+-- ......|+--||+++|..||+.++.
T Consensus 144 ~~~~fVa~~Ya--~~~~~~G~~gDa~~~L~~ll~~~~~ 179 (320)
T PF08715_consen 144 DPAPFVAWCYA--STNAKKGDPGDAEYVLSKLLKDADL 179 (320)
T ss_dssp --HHHHHHHHH--HTT--TTS---HHHHHHHHHTTB-T
T ss_pred ChHHHHHHHHH--HcCCCCCCCcCHHHHHHHHHHhccc
Confidence 45666665532 3566778899999999999987764
No 44
>KOG3556|consensus
Probab=76.57 E-value=0.7 Score=44.21 Aligned_cols=35 Identities=23% Similarity=0.339 Sum_probs=26.3
Q ss_pred EEeecCCCceEEEEeeeccCCcccccCCceEeeCC
Q psy1343 200 FEITSLPPYLILYVKRFTKNTFFVEKNPTIVNFPV 234 (337)
Q Consensus 200 ~~i~~lP~~Lii~l~Rf~~~~~~~~K~~~~v~fp~ 234 (337)
.++...|..+||+..||..+.....++-..+..|+
T Consensus 516 ik~~e~pSc~iiqmprfgk~~km~~~i~pS~~l~V 550 (724)
T KOG3556|consen 516 IKSTETPSCQIIQMPRFGKSQKMPAAIGPSISLPV 550 (724)
T ss_pred cccccCcchhheeccccCcccccchhcCCceEeec
Confidence 34678999999999999876655556666666665
No 45
>PF01473 CW_binding_1: Putative cell wall binding repeat; InterPro: IPR018337 The cell wall-binding repeat (CW) is an about 20 amino acid residue module, essentially found in two bacterial Gram-positive protein families; the choline binding proteins and glucosyltransferases (2.4.1.5 from EC). In choline-binding proteins cell wall binding repeats bind to choline moieties of both teichoic and lipoteichoic acids, two components peculiar to the cell surface of Gram-positive bacteria [, ]. In glucosyltransferases the region spanning the CW repeats is a glucan binding domain []. Several crystal structures of CW have been solved [, ]. In the choline binding protein LytA, the repeats adopt a solenoid fold consisting exclusively of beta-hairpins that stack to form a left-handed superhelix with a boomerang-like shape. The choline groups bind between beta-hairpin 'steps' of the superhelix []. In Cpl-1 CW repeats assemble in two sub-domains: an N-terminal superhelical moiety similar to the LytA one and a C-terminal beta-sheet involved in interactions with the lysozyme domain. Choline is bound between repeats 1 and 2, and, 2 and 3 of the superhelical sub-domain []. Some proteins known to contain cell-wall binding repeats include: Pneumococcal N-acetylmuramoyl-L-alanine amidase (autolysin, lytA) (3.5.1.28 from EC). It is a surface-exposed enzyme that rules the self-destruction of pneumococcal cells through degradation of their peptidoglycan backbone. It mediates the release of toxic substances that damage the host tissues. Pneumococcal endo-beta-N-acetylglucosaminidase (lytB) (3.2.1.96 from EC). It plays an important role in cell wall degradation and cell separation. Pneumococcal teichoic acid phosphorylcholine esterase (pce or cbpE), a cell wall hydrolase important for cellular adhesion and colonisation. Lactobacillales glucosyltransferase. It catalyses the transfer of glucosyl units from the cleavage of sucrose to a growing chain of glucan. Clostridium difficile toxin A (tcdA) and toxin B (tcdb). They are the causative agents of the antibiotic-associated pseudomembranous colitis. They are intracellular acting toxins that reach their targets after receptor-mediated endocytosis. Clostridium acetobutylicum cspA protein. Siphoviridae bacteriophages N-acetylmuramoyl-L-alanine amidase. It lyses the bacterial host cell wall. Podoviridae lysozyme protein (cpl-1). It is capable of digesting the pneumococcal cell wall. The cell wall binding repeats are also known as the choline-binding repeats (ChBr) or the choline-binding domain (ChBD). ; PDB: 1GVM_C 2BML_B 1HCX_A 1OBA_A 1H09_A 2J8F_A 2IXU_A 2J8G_A 2IXV_A 2X8O_A ....
Probab=66.24 E-value=9 Score=18.97 Aligned_cols=14 Identities=21% Similarity=0.525 Sum_probs=11.1
Q ss_pred EEEeCCCCcEEEecCC
Q psy1343 288 HLYHKGIGKWYEIQDL 303 (337)
Q Consensus 288 ~vk~~~~~~W~~~nD~ 303 (337)
+++. ++.||.|+++
T Consensus 3 W~~~--~~~wYy~~~~ 16 (19)
T PF01473_consen 3 WVQD--NGNWYYFDSD 16 (19)
T ss_dssp EEEE--TTEEEEETTT
T ss_pred CEEE--CCEEEEeCCC
Confidence 5666 6999999875
No 46
>PF02099 Josephin: Josephin; InterPro: IPR006155 Human genes containing triplet repeats can markedly expand in length, leading to neuropsychiatric disease. Expansion of triplet repeats explains the phenomenon of anticipation, i.e. the increasing severity or earlier age of onset in successive generations in a pedigree []. A novel gene containing CAG repeats has been identified and mapped to chromosome 14q32.1, the genetic locus for Machado-Joseph disease (MJD). Normally, the gene contains 13-36 CAG repeats, but most clinically diagnosed patients and all affected members of a family with the clinical and pathological diagnosis of MJD show expansion of the repeat number, from 68-79 []. Similar abnormalities in related genes may give rise to diseases similar to MJD. MJD is a neurodegenerative disorder characterised by cerebellar ataxia, pyramidal and extra-pyramidal signs, peripheral nerve palsy, external ophtalmoplegia, facial and lingual fasciculation and bulging. The disease is autosomal dominant, with late onset of symptoms, generally after the fourth decade.; GO: 0008242 omega peptidase activity; PDB: 3O65_G 1YZB_A 2JRI_A 2DOS_A 2AGA_A.
Probab=60.04 E-value=13 Score=30.45 Aligned_cols=33 Identities=12% Similarity=0.141 Sum_probs=25.3
Q ss_pred eEeEEEEeecCCCCCeEEEEEEeCCCCcEEEecCCcccc
Q psy1343 269 DLVANIVHDGEPSNGTYRVHLYHKGIGKWYEIQDLHVTD 307 (337)
Q Consensus 269 ~L~avi~H~G~~~~GHY~a~vk~~~~~~W~~~nD~~V~~ 307 (337)
...|+|++.+ -|++|..|- +|.||-.|=..-.|
T Consensus 98 ~~~gfI~N~~----~HWf~iRki--~~~wyNLDS~l~~P 130 (157)
T PF02099_consen 98 NEFGFICNLS----RHWFAIRKI--GGQWYNLDSKLKEP 130 (157)
T ss_dssp CSSEEEEECT----TEEEEEEEE--TTEEEEECTTTSS-
T ss_pred hceEEEeccC----cceEEEEee--CCeeEeccCCCCCC
Confidence 3468899954 599998887 79999998766544
No 47
>PF03292 Pox_P4B: Poxvirus P4B major core protein; InterPro: IPR004972 This family is the Poxvirus P4B major core protein. It is a precursor for one of the two most abundant structural components of the virion (major core proteins 4A and 4B).
Probab=58.40 E-value=19 Score=35.62 Aligned_cols=43 Identities=19% Similarity=0.240 Sum_probs=28.2
Q ss_pred CCcceeEeEEEEee-cC----------C-CCCeEEEEEEeCCCCcEEEecCCcccccC
Q psy1343 264 ESTMYDLVANIVHD-GE----------P-SNGTYRVHLYHKGIGKWYEIQDLHVTDIL 309 (337)
Q Consensus 264 ~~~~Y~L~avi~H~-G~----------~-~~GHY~a~vk~~~~~~W~~~nD~~V~~v~ 309 (337)
....|+|.|.||+. |+ . --|||+ .++. ...||.||=..|--.+
T Consensus 520 ngimyrL~SAVCYK~~d~~~d~C~~~diflkG~yt-IlfT--e~Gpw~YDP~s~~s~~ 574 (666)
T PF03292_consen 520 NGIMYRLKSAVCYKIGDQFFDGCNGNDIFLKGYYT-ILFT--EMGPWMYDPLSIFSKN 574 (666)
T ss_pred cceeeeeehhheeeccccccCCCCCCcceeceeEE-EEEe--cCCceeeCchhhcCcc
Confidence 56789999999885 32 1 248887 4554 3558888866554333
No 48
>PF14353 CpXC: CpXC protein
Probab=38.50 E-value=59 Score=25.25 Aligned_cols=44 Identities=16% Similarity=0.077 Sum_probs=25.7
Q ss_pred ccccccCceeeeeecceeeeccCCCCCCccccccccCCCcccHH-HHHh-hhcccchhhhccc
Q psy1343 132 LLLTEEYKETETESPFLYLTCDLPPPPLFKDEVLENIIPQVNLY-TILT-KFNNESEKEYKTY 192 (337)
Q Consensus 132 ~~C~~C~~~s~~~e~f~~lsl~ip~~~~~~~~~~~~~~~~~sl~-~~L~-~~~~~~~~~c~~~ 192 (337)
++|..|++.....- +. +|+....+ .+. ..|+ .++...|+.|+..
T Consensus 2 itCP~C~~~~~~~v-~~--~I~~~~~p--------------~l~e~il~g~l~~~~CP~Cg~~ 47 (128)
T PF14353_consen 2 ITCPHCGHEFEFEV-WT--SINADEDP--------------ELKEKILDGSLFSFTCPSCGHK 47 (128)
T ss_pred cCCCCCCCeeEEEE-Ee--EEcCcCCH--------------HHHHHHHcCCcCEEECCCCCCc
Confidence 57999999755432 22 33333222 233 3333 5677789999865
No 49
>PF00770 Peptidase_C5: Adenovirus endoprotease; InterPro: IPR000855 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine aminopeptidases belong to the peptidase family C5 (adenain family, clan CE). Several adenovirus proteins are synthesised as precursors, requiring processing by a protease before the virion is assembled [, ]. Until recently, the adenovirus endopeptidase was classified as a serine protease, having been reported to be inhibited by serine protease inhibitors [, ]. However, it has since been shown to be inhibited by cysteine protease inhibitors, and the catalytic residues are believed to be His-54 and Cys-104 [, ].; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 1NLN_A 1AVP_A.
Probab=29.57 E-value=96 Score=25.63 Aligned_cols=33 Identities=12% Similarity=0.216 Sum_probs=21.0
Q ss_pred EeEEEEeecC--CCCCeEEEEEEeCCCCcEEEecC
Q psy1343 270 LVANIVHDGE--PSNGTYRVHLYHKGIGKWYEIQD 302 (337)
Q Consensus 270 L~avi~H~G~--~~~GHY~a~vk~~~~~~W~~~nD 302 (337)
+..-|+-.|+ .++=|++|+.-++...+.|.||=
T Consensus 19 ~acAIVNT~~retGGvHWlA~Aw~P~s~t~YmFDP 53 (183)
T PF00770_consen 19 PACAIVNTGGRETGGVHWLAFAWDPRSRTFYMFDP 53 (183)
T ss_dssp -EEEEEESS-TTT--S-EEEEEEETTTTEEEEE-T
T ss_pred cceEEEecCCcccCceeEEEEEecCCcceEEEeCC
Confidence 4345555564 36669999999998889999984
No 50
>PRK09750 hypothetical protein; Provisional
Probab=28.92 E-value=84 Score=20.87 Aligned_cols=31 Identities=23% Similarity=0.391 Sum_probs=22.3
Q ss_pred cceeEeEEEEeecCCCCCeEEEEEEeCCCCcEEEecCCcccccC
Q psy1343 266 TMYDLVANIVHDGEPSNGTYRVHLYHKGIGKWYEIQDLHVTDIL 309 (337)
Q Consensus 266 ~~Y~L~avi~H~G~~~~GHY~a~vk~~~~~~W~~~nD~~V~~v~ 309 (337)
++|++.|.|---|.. .-.|.+|.|...+...
T Consensus 2 ykY~I~Ati~KpGg~-------------P~~W~r~s~~~mtk~E 32 (64)
T PRK09750 2 YMYKITATIEKEGGT-------------PTNWTRYSKSKLTKSE 32 (64)
T ss_pred ceeEEEEEEECCCCC-------------ccceeEecCCcCCHHH
Confidence 578888887776631 2469999999887653
No 51
>PF09932 DUF2164: Uncharacterized conserved protein (DUF2164); InterPro: IPR018680 This family of various hypothetical prokaryotic proteins has no known function.
Probab=27.18 E-value=53 Score=23.20 Aligned_cols=63 Identities=11% Similarity=0.068 Sum_probs=47.0
Q ss_pred hHHHHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHhccCCCCcCCCCCHHHHHHHHHHHHHHHhc
Q psy1343 30 FLLVQRFGELMRKLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALN 94 (337)
Q Consensus 30 ~~l~~~l~~l~~~l~~~~~~~~~i~p~~~~~~l~~~~~~~f~~~~QqDa~Efl~~ll~~l~~~~~ 94 (337)
..++..++..|..=..-. -+.+....++.-+.+..+|.|-+..-+||+.++.--++.|.+++-
T Consensus 9 ~~li~~iq~yf~~E~d~e--iG~~~Ae~LLDF~~~elGp~~YNqgv~DA~~~~~~r~~~l~~~ly 71 (76)
T PF09932_consen 9 AELIDKIQRYFAEELDEE--IGDFEAEFLLDFFIEELGPHFYNQGVQDAQAVLEERMEDLEEELY 71 (76)
T ss_pred HHHHHHHHHHHHHHhcCc--HHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 346666666665544433 456778888888877778888777789999999999999988763
No 52
>KOG1333|consensus
Probab=25.59 E-value=1.3e+02 Score=25.63 Aligned_cols=28 Identities=18% Similarity=0.228 Sum_probs=21.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHhccCCCCC
Q psy1343 73 TEQSDPIDFLSWFLNTLHRALNGTKKKD 100 (337)
Q Consensus 73 ~~QqDa~Efl~~ll~~l~~~~~~~~~~~ 100 (337)
.+-+|-.|++...+..|..++...++..
T Consensus 186 ~~~~e~n~~lr~~~~~lq~e~~~~t~~~ 213 (241)
T KOG1333|consen 186 NQVQEENEVLRQKLFALQAEIHRLKKEE 213 (241)
T ss_pred cccchhhHHHHHHHHHHHHHHHHhhhcc
Confidence 3446778999999999999987765433
No 53
>smart00460 TGc Transglutaminase/protease-like homologues. Transglutaminases are enzymes that establish covalent links between proteins. A subset of transglutaminase homologues appear to catalyse the reverse reaction, the hydrolysis of peptide bonds. Proteins with this domain are both extracellular and intracellular, and it is likely that the eukaryotic intracellular proteins are involved in signalling events.
Probab=25.11 E-value=1e+02 Score=20.37 Aligned_cols=19 Identities=16% Similarity=0.380 Sum_probs=16.4
Q ss_pred CCCeEEEEEEeCCCCcEEEec
Q psy1343 281 SNGTYRVHLYHKGIGKWYEIQ 301 (337)
Q Consensus 281 ~~GHY~a~vk~~~~~~W~~~n 301 (337)
...|-+.-++. +++|+.+|
T Consensus 47 ~~~H~W~ev~~--~~~W~~~D 65 (68)
T smart00460 47 WEAHAWAEVYL--EGGWVPVD 65 (68)
T ss_pred CCcEEEEEEEE--CCCeEEEe
Confidence 57899999988 58999987
No 54
>cd03172 SORL_classII Superoxide reductase-like (SORL) domain, class II; SORL-domains are present in a family of mononuclear non-heme iron proteins that includes superoxide reductase and desulfoferrodoxin. Superoxide reductase-like proteins scavenge superoxide anion radicals as a defense mechanism against reactive oxygen species and are found in anaerobic bacteria and archeae, and microaerophilic Treponema pallidum. The SORL domain contains an active iron site, Fe[His4Cys(Glu)], which in the reduced state loses the glutamate ligand. Superoxide reductase (class II) forms a homotetramer with four Fe[His4Cys(Glu)] centers.
Probab=25.03 E-value=3e+02 Score=20.61 Aligned_cols=41 Identities=2% Similarity=-0.235 Sum_probs=24.2
Q ss_pred CCCCeEEEEEEeCCCCcEEEecCCcccccCcccc--ccCCcEEEEEEecC
Q psy1343 280 PSNGTYRVHLYHKGIGKWYEIQDLHVTDILPQMI--TLTEAYIQIYELRT 327 (337)
Q Consensus 280 ~~~GHY~a~vk~~~~~~W~~~nD~~V~~v~~~~v--~~~~aYiLfY~r~~ 327 (337)
+.-|||+.+|.- .++|..|..+...-. ....++.-|+-+.+
T Consensus 38 M~~~HyI~wI~l-------~~~~~~v~r~~l~p~~~~~~~P~a~F~l~~~ 80 (104)
T cd03172 38 NTTEHHIEWIEL-------YFGVYLLGRVEFTAHGGVYTKPEATFTVKIP 80 (104)
T ss_pred CCCCeEEEEEEE-------EECCEEEEEEEEeCCCCCCCCCeEEEEEEcc
Confidence 478999999964 355656655544322 13556666655433
No 55
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=24.99 E-value=73 Score=33.94 Aligned_cols=28 Identities=7% Similarity=0.190 Sum_probs=21.9
Q ss_pred EEeecC-CCCCeEEEEEEeCCCCcEEEecC
Q psy1343 274 IVHDGE-PSNGTYRVHLYHKGIGKWYEIQD 302 (337)
Q Consensus 274 i~H~G~-~~~GHY~a~vk~~~~~~W~~~nD 302 (337)
..-.|. .+|||++..+|.+ ++++|+||-
T Consensus 53 ltgv~p~~~sghwimlikg~-gn~y~lfdp 81 (1439)
T PF12252_consen 53 LTGVSPRQDSGHWIMLIKGQ-GNQYYLFDP 81 (1439)
T ss_pred ecCcCCCCcCceeEEEEEcC-CCceEEecc
Confidence 333455 4899999999996 788999983
No 56
>cd04480 RPA1_DBD_A_like RPA1_DBD_A_like: A subgroup of uncharacterized plant OB folds with similarity to the second OB fold, the ssDNA-binding domain (DBD)-A, of human RPA1 (also called RPA70). RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). In addition to DBD-A, RPA1 contains three other OB folds: DBD-B, DBD-C, and RPA1N. The major DNA binding activity of RPA is associated with DBD-A and DBD-B of RPA1. RPA1 DBD-C is involved in trimerization. The ssDNA-binding mechanism is believed to be multistep and to involve conformational change.
Probab=24.95 E-value=84 Score=22.36 Aligned_cols=32 Identities=22% Similarity=0.368 Sum_probs=25.8
Q ss_pred CCcEEEecCCcccccCccccccCCcEEEEEEe
Q psy1343 294 IGKWYEIQDLHVTDILPQMITLTEAYIQIYEL 325 (337)
Q Consensus 294 ~~~W~~~nD~~V~~v~~~~v~~~~aYiLfY~r 325 (337)
.|+||.+.+..|.+.+..--.....|++.+..
T Consensus 51 eg~vy~is~f~v~~~~~~y~~~~~~y~I~f~~ 82 (86)
T cd04480 51 EGKWYTISNFEVAPNTGSYRPTDHPYKIKFMS 82 (86)
T ss_pred eCCEEEEeeEEEEcCCCcccccCCcEEEEeec
Confidence 48999999999999886666667788887654
No 57
>cd00524 SORL Superoxide reductase-like (SORL) domain; present in a family of mononuclear non-heme iron proteins that includes superoxide reductase and desulfoferrodoxin. Superoxide reductase-like proteins scavenge superoxide anion radicals as a defense mechanism against reactive oxygen species and are found in anaerobic bacteria and archeae, and microaerophilic Treponema pallidum. The SORL domain contains an active iron site, Fe[His4Cys(Glu)], which in the reduced state loses the glutamate ligand. Superoxide reductase (class II) forms a homotetramer with four Fe[His4Cys(Glu)] centers. Desulfoferrodoxin (class I) is a homodimeric protein, with each protomer comprised of two domains, the N-terminal desulforedoxin (DSRD) domain and C-terminal SORL domain. Each domain has a distinct iron center: the DSRD iron center I, Fe(S-Cys)4; and the SORL iron center II, Fe[His4Cys(Glu)].
Probab=24.58 E-value=2.7e+02 Score=19.88 Aligned_cols=47 Identities=13% Similarity=-0.065 Sum_probs=29.1
Q ss_pred eEEEEeec----CCCCCeEEEEEEeCCCCcEEEecCCcccccCccccccCCcEEEEEEec
Q psy1343 271 VANIVHDG----EPSNGTYRVHLYHKGIGKWYEIQDLHVTDILPQMITLTEAYIQIYELR 326 (337)
Q Consensus 271 ~avi~H~G----~~~~GHY~a~vk~~~~~~W~~~nD~~V~~v~~~~v~~~~aYiLfY~r~ 326 (337)
..|.+..| .+.-+||+.+|.- .++|..|......- ...|+.-|.-+.
T Consensus 17 ~~v~V~vg~~~Hpm~~~HyI~wI~l-------~~~d~~v~~~~l~P--~~~P~~~F~l~~ 67 (86)
T cd00524 17 FDVKVKVGSVPHPMTEEHYIEWIEL-------YFGDEKVGRVELTP--GTKPEATFTVKA 67 (86)
T ss_pred CEEEEEECCccCCCCCCcEEEEEEE-------EECCeEEEEEECCC--CCCCEEEEEEec
Confidence 34666667 3588999999964 35554555444322 455666666553
No 58
>cd01269 PLX Pollux (PLX) Phosphotyrosine-binding (PTB) domain. Pollux (PLX) Phosphotyrosine-binding (PTB) domain. PLX is calmodulin-binding protein containing a TBC domain, which is conserved from yeast to man, but it only has an N-terminal PTB domain in mammals. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=24.48 E-value=90 Score=24.34 Aligned_cols=29 Identities=14% Similarity=0.192 Sum_probs=22.7
Q ss_pred CCcceeEeEEEEeecC-CCCCeEEEEEEeC
Q psy1343 264 ESTMYDLVANIVHDGE-PSNGTYRVHLYHK 292 (337)
Q Consensus 264 ~~~~Y~L~avi~H~G~-~~~GHY~a~vk~~ 292 (337)
....=+.+|+|+-..+ ..+-||+|||-.-
T Consensus 79 g~~~~dhFgFIcrEs~~~~~~~f~CyVFqc 108 (129)
T cd01269 79 GIKHVDHFGFICRESPEPGLSQYICYVFQC 108 (129)
T ss_pred CCCCcceEEEEeccCCCCCcceEEEEEEEc
Confidence 3445678999999887 4667999999763
No 59
>PF09149 DUF1935: Domain of unknown function (DUF1935); InterPro: IPR015232 This entry represents a conserved region found in various bacterial and eukaryotic hypothetical proteins, as well as in the cysteine protease calpain. Its function has not, as yet, been defined. ; PDB: 1R75_A 2FE0_A.
Probab=24.02 E-value=64 Score=24.33 Aligned_cols=17 Identities=18% Similarity=0.317 Sum_probs=11.6
Q ss_pred CCCcEEEecCCcccccC
Q psy1343 293 GIGKWYEIQDLHVTDIL 309 (337)
Q Consensus 293 ~~~~W~~~nD~~V~~v~ 309 (337)
.+++|..|||+.-..+.
T Consensus 30 ~~~~WaFYNDT~~y~m~ 46 (104)
T PF09149_consen 30 KEGRWAFYNDTKDYEMH 46 (104)
T ss_dssp TTTEEEEEE--SSEEEE
T ss_pred CCCEEEEEeCCCcEEEE
Confidence 47899999999876553
No 60
>PF10748 DUF2531: Protein of unknown function (DUF2531); InterPro: IPR019684 This entry represents proteins with unknown function and appears to be restricted to Enterobacteriaceae.
Probab=23.21 E-value=92 Score=24.59 Aligned_cols=45 Identities=20% Similarity=0.338 Sum_probs=32.1
Q ss_pred CCcceeEeEEEEeecCCCCCeEEEEEEeCCCCcEEEecCCc-------ccccCccccc
Q psy1343 264 ESTMYDLVANIVHDGEPSNGTYRVHLYHKGIGKWYEIQDLH-------VTDILPQMIT 314 (337)
Q Consensus 264 ~~~~Y~L~avi~H~G~~~~GHY~a~vk~~~~~~W~~~nD~~-------V~~v~~~~v~ 314 (337)
.....+|.|||-. +++|++++.++ .++|.+.-... |+.++..++.
T Consensus 32 ~Ls~WrlqGiVg~-----~~~~~gwl~~p-~g~W~Rv~~g~~L~~gWrV~~i~~~~lt 83 (132)
T PF10748_consen 32 QLSQWRLQGIVGQ-----GDRWIGWLQDP-QGKWLRVRQGQVLPPGWRVTQITARQLT 83 (132)
T ss_pred ccccceEccEECC-----CCcEEEEEECC-CCCeEEeccCCCCCCCcEEEEEcCCeEE
Confidence 3458999999874 45999999996 89999875554 4445554443
No 61
>PHA02131 hypothetical protein
Probab=22.62 E-value=74 Score=20.80 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=18.8
Q ss_pred CCCeEEEEEEeCCCCcEEEecCCcccccCc
Q psy1343 281 SNGTYRVHLYHKGIGKWYEIQDLHVTDILP 310 (337)
Q Consensus 281 ~~GHY~a~vk~~~~~~W~~~nD~~V~~v~~ 310 (337)
-.|||.--+ .-|+.|-|..|+.+..
T Consensus 21 irgh~~~g~-----~c~imfk~~~v~dctf 45 (70)
T PHA02131 21 IRGHYRFGI-----SCWIMFKNDQVIDCTF 45 (70)
T ss_pred eccceecce-----EEEEEEcCCCEEEeee
Confidence 358886544 3499999999998764
No 62
>COG0093 RplN Ribosomal protein L14 [Translation, ribosomal structure and biogenesis]
Probab=22.04 E-value=1.6e+02 Score=22.65 Aligned_cols=34 Identities=18% Similarity=0.131 Sum_probs=23.9
Q ss_pred eEeEEEEeecCCCCCeEEEEEEeCCCCcEEEecCCcccccCcc
Q psy1343 269 DLVANIVHDGEPSNGTYRVHLYHKGIGKWYEIQDLHVTDILPQ 311 (337)
Q Consensus 269 ~L~avi~H~G~~~~GHY~a~vk~~~~~~W~~~nD~~V~~v~~~ 311 (337)
-+.|||+..-.. |.|. +|.|..|||.-..-++.+
T Consensus 57 V~~AViVRtkk~-------~rR~--DGs~i~FddNA~Viin~~ 90 (122)
T COG0093 57 VVKAVVVRTKKE-------VRRP--DGSYIKFDDNAAVIINPD 90 (122)
T ss_pred eEEEEEEEeCCc-------eEcC--CCCEEEeCCceEEEECCC
Confidence 456788776531 3333 899999999988777654
No 63
>PRK14127 cell division protein GpsB; Provisional
Probab=20.99 E-value=1.2e+02 Score=23.14 Aligned_cols=36 Identities=14% Similarity=0.249 Sum_probs=28.7
Q ss_pred CCChHHHHHHHHHhccCCCCcCCCCCHHHHHHHHHHHHH
Q psy1343 52 HVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLH 90 (337)
Q Consensus 52 ~i~p~~~~~~l~~~~~~~f~~~~QqDa~Efl~~ll~~l~ 90 (337)
.++|..+.+ +.+...|.|+.+.+..+||..+.+-+.
T Consensus 5 ~LTp~DI~~---KeF~~~~RGYd~~EVD~FLd~V~~dye 40 (109)
T PRK14127 5 KLTPKDILE---KEFKTSMRGYDQDEVDKFLDDVIKDYE 40 (109)
T ss_pred CCCHHHHhh---CccCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 578888876 445678999999999999999986443
No 64
>KOG2935|consensus
Probab=20.43 E-value=14 Score=32.29 Aligned_cols=55 Identities=16% Similarity=0.093 Sum_probs=37.5
Q ss_pred eEEEEeecCCCCCeEEEEEEeCCCCcEEEecCCcccccCcccc--------ccCCcEEEEEEecCCCCC
Q psy1343 271 VANIVHDGEPSNGTYRVHLYHKGIGKWYEIQDLHVTDILPQMI--------TLTEAYIQIYELRTTPSP 331 (337)
Q Consensus 271 ~avi~H~G~~~~GHY~a~vk~~~~~~W~~~nD~~V~~v~~~~v--------~~~~aYiLfY~r~~~~~~ 331 (337)
.|.|||.-. |+.+..|- +++||.+|--.-.|--..+. ++..+|-.|-.+-+.|..
T Consensus 104 rafICnl~e----HWF~iRKf--g~qWfnlnSllagPellSdtyls~FL~qlq~egySIFVVkG~lP~~ 166 (315)
T KOG2935|consen 104 RAFICNLKE----HWFTIRKF--GKQWFNLNSLLAGPELLSDTYLSAFLAQLQQEGYSIFVVKGDLPDC 166 (315)
T ss_pred hhhhhcchh----hhhhHhhh--cchhccchhhhcchHHHHHHHHHHHHHHHHhCCeeEEEEecCCCCc
Confidence 467888774 99887765 79999999765443221111 148899999888777643
Done!