Query psy1343
Match_columns 337
No_of_seqs 172 out of 1502
Neff 9.1
Searched_HMMs 29240
Date Fri Aug 16 19:15:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1343.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1343hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2y6e_A Ubiquitin carboxyl-term 100.0 2.1E-61 7.3E-66 451.7 25.3 298 1-333 26-365 (367)
2 3nhe_A Ubiquitin carboxyl-term 100.0 2.3E-59 7.8E-64 434.4 25.8 285 1-331 27-347 (348)
3 2gfo_A Ubiquitin carboxyl-term 100.0 9.5E-60 3.2E-64 444.2 22.3 280 1-327 80-396 (396)
4 3i3t_A Ubiquitin carboxyl-term 100.0 2.2E-58 7.6E-63 428.9 19.5 283 1-330 21-354 (355)
5 2ayn_A Ubiquitin carboxyl-term 100.0 3.1E-56 1.1E-60 421.8 17.4 299 1-336 32-403 (404)
6 1nb8_A Ubiquitin carboxyl-term 100.0 3.1E-54 1.1E-58 400.9 19.8 267 1-328 24-316 (353)
7 1vjv_A Ubiquitin carboxyl-term 100.0 2.3E-54 7.9E-59 410.4 18.4 286 1-327 42-414 (415)
8 3mhs_A Ubiquitin carboxyl-term 100.0 3.4E-53 1.2E-57 409.1 18.9 286 1-328 159-475 (476)
9 3ihp_A Ubiquitin carboxyl-term 100.0 1.7E-51 5.7E-56 417.9 21.2 298 1-327 362-853 (854)
10 2f1z_A Ubiquitin carboxyl-term 100.0 1.9E-51 6.4E-56 400.7 19.1 267 1-328 193-485 (522)
11 2vhf_A Ubiquitin carboxyl-term 99.8 8.8E-21 3E-25 171.1 6.0 216 1-302 27-308 (374)
12 3mp2_A Non-structural protein 75.7 2.3 7.9E-05 35.2 3.7 33 273-309 163-195 (211)
13 2fe8_A PP1AB, ORF1AB, replicas 59.5 6.8 0.00023 34.6 3.5 35 273-310 262-296 (315)
14 3o65_A Putative ataxin-3-like 55.8 17 0.00058 29.5 5.0 57 270-332 110-174 (191)
15 2ww6_A Fibritin, T4 fibritin; 41.1 18 0.0006 19.0 1.9 15 287-303 12-26 (27)
16 2oxg_Z SOXZ protein; immunoglo 40.1 73 0.0025 23.1 5.9 57 264-327 16-82 (108)
17 1qmy_A Protease, leader protea 38.9 21 0.0007 27.4 2.8 28 281-310 117-144 (167)
18 1v8h_A Sulfur oxidation protei 35.1 58 0.002 23.6 4.7 56 265-327 16-81 (107)
19 4ekf_A Adenain; alpha and beta 28.7 65 0.0022 25.9 4.3 31 272-302 40-72 (204)
20 3aqy_A Beta-1,3-glucan-binding 27.1 56 0.0019 23.6 3.4 38 268-305 27-68 (106)
21 1r75_A Hypothetical protein; s 23.8 45 0.0015 25.5 2.4 16 293-308 49-64 (141)
22 2kha_A Beta-1,3-glucan-binding 21.8 84 0.0029 23.7 3.6 25 280-304 52-76 (130)
No 1
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens}
Probab=100.00 E-value=2.1e-61 Score=451.68 Aligned_cols=298 Identities=29% Similarity=0.448 Sum_probs=246.5
Q ss_pred CCCCChHHHHHhhccccccccCC-CCCCCchHHHHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHhccCCCCcCCCCCHH
Q psy1343 1 ALCHVTPLRDYFLREINYARVKR-PPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPI 79 (337)
Q Consensus 1 ~L~~~~~l~~~~l~~~~~~~~~~-~~~~~~~~l~~~l~~l~~~l~~~~~~~~~i~p~~~~~~l~~~~~~~f~~~~QqDa~ 79 (337)
||+|+|+||+||+...+....+. .+....++++++|++|+..||+++ ...++|..|+.+++.. .+.|.++.|||||
T Consensus 26 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~--~~~i~P~~~~~~l~~~-~~~f~~~~QqDA~ 102 (367)
T 2y6e_A 26 CLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGR--DAHVAPRMFKTQVGRF-APQFSGYQQQDSQ 102 (367)
T ss_dssp HHHTCHHHHHHHHTTCGGGGCCSSCTTSCTTHHHHHHHHHHHHHTSSS--CSEECCHHHHHHHHHH-CGGGCSSSCCCHH
T ss_pred HHHCCHHHHHHHHcCchhhhccccCCCCcchHHHHHHHHHHHHHHcCC--CCCcCHHHHHHHHHHh-hhhcCCCCCCCHH
Confidence 68999999999998766544322 233345789999999999999987 6789999999999876 7999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCC---------------------------CCCcceeccCCeEeeeeecCCCcchhHhhhhhc
Q psy1343 80 DFLSWFLNTLHRALNGTKKK---------------------------DSSIVYKTFLGSMKVKTRKIPPVELEEKVRQRL 132 (337)
Q Consensus 80 Efl~~ll~~l~~~~~~~~~~---------------------------~~~~i~~~F~g~~~~~~~~~~~~~~~~~~~~~~ 132 (337)
|||.+|||.||++++...+. ..++|.++|+|+++ +++
T Consensus 103 Efl~~LLd~L~~~l~~~~~~~~~~~~~~~g~~~~~~a~~~w~~~~~~~~s~i~~~F~G~l~----------------s~~ 166 (367)
T 2y6e_A 103 ELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAKEAWENHRLRNDSVIVDTFHGLFK----------------STL 166 (367)
T ss_dssp HHHHHHHHHHHHHTCSCSSCCCCCCCCCCSCCHHHHHHHHHHHHHHHCCSHHHHHHCEEEE----------------EEE
T ss_pred HHHHHHHHHHHHHHHhhccCCccccccccCCchhHHHHHHHHHHHHhcCCccccccCcEEe----------------eeE
Confidence 99999999999998764321 34678999999999 667
Q ss_pred cccccCceeeeeecceeeeccCCCCCCccccc-----cccCCCcccHHHHHhhhccc---------chhhhcccccceeE
Q psy1343 133 LLTEEYKETETESPFLYLTCDLPPPPLFKDEV-----LENIIPQVNLYTILTKFNNE---------SEKEYKTYKENFLK 198 (337)
Q Consensus 133 ~C~~C~~~s~~~e~f~~lsl~ip~~~~~~~~~-----~~~~~~~~sl~~~L~~~~~~---------~~~~c~~~~~~~~k 198 (337)
+|..|++.+.+.|+|++|+|+||......... .....+.++|++||+.|+.. .|+.|+.. +.+.|
T Consensus 167 ~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~f~~~E~l~~~~~~~C~~C~~~-~~a~K 245 (367)
T 2y6e_A 167 VCPECAKVSVTFDPFCYLTLPLPLKKDRVMEGPMLQPQKKKKTTVALRDCIELFTTMETLGEHDPWYCPNCKKH-QQATK 245 (367)
T ss_dssp ECTTTCCEEEEEEEESSEEEECCC-------------------CEEHHHHHHHHTSCEECCC-CCEEETTTTEE-ECCEE
T ss_pred EeCCCCCEeeeEccCeeEEeeCCCCcCCcceeeeeccccccCCCCCHHHHHHHhcccccCCCCCCccCCCCCCC-ceEEE
Confidence 89999999999999999999999753211000 00112357999999999865 38888877 88999
Q ss_pred EEEeecCCCceEEEEeeeccCCcccccCCceEeeCCCCCCCCCCCCchhhhhcchhhhhhhhccCCCcceeEeEEEEeec
Q psy1343 199 RFEITSLPPYLILYVKRFTKNTFFVEKNPTIVNFPVKNVDFGDILTPEVKAKYESTMYDLVKAKYESTMYDLVANIVHDG 278 (337)
Q Consensus 199 ~~~i~~lP~~Lii~l~Rf~~~~~~~~K~~~~v~fp~~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avi~H~G 278 (337)
+..|.++|+||+|||+||.++.+...|++..|.||++.|||++|+..... ....|+|+|||+|.|
T Consensus 246 ~~~i~~lP~vL~i~LkRF~~~~~~~~K~~~~v~fp~~~Ldl~~~~~~~~~---------------~~~~Y~L~avv~H~G 310 (367)
T 2y6e_A 246 KFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPIRGLNMSEFVCNLSA---------------RPYVYDLIAVSNHYG 310 (367)
T ss_dssp EEEEEECCSEEEEEEECEEECSSCEEECCCCEECCSSCEECGGGBSCSSS---------------CCCEEEEEEEEEEEC
T ss_pred EEEEecCCcEEEEEEeCeeecCccceecCceEEecCCcCChhhhccCCCC---------------CCceEEEEEEeecCC
Confidence 99999999999999999999887788999999999657999999876432 467999999999999
Q ss_pred CCCCCeEEEEEEeCCCCcEEEecCCcccccCccccccCCcEEEEEEecCCCCCCC
Q psy1343 279 EPSNGTYRVHLYHKGIGKWYEIQDLHVTDILPQMITLTEAYIQIYELRTTPSPTA 333 (337)
Q Consensus 279 ~~~~GHY~a~vk~~~~~~W~~~nD~~V~~v~~~~v~~~~aYiLfY~r~~~~~~~~ 333 (337)
++++|||+||+|+..+++||+|||+.|+++++++|....||||||+|++.....+
T Consensus 311 ~~~~GHY~a~~~~~~~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r~~~~~~~~ 365 (367)
T 2y6e_A 311 AMGVGHYTAYAKNKLNGKWYYFDDSNVSLASEDQIVTKAAYVLFYQRRDDEFYKT 365 (367)
T ss_dssp SSSSCEEEEEEECTTTCCEEEEETTEEEECCGGGTSSTTEEEEEEEECCC-----
T ss_pred CCCCCeeeEEEEcCCCCeEEEECCCCceECCHHHcCCCCcEEEEEEEcCCCCCCC
Confidence 9999999999999767999999999999999999999999999999988655443
No 2
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A
Probab=100.00 E-value=2.3e-59 Score=434.40 Aligned_cols=285 Identities=26% Similarity=0.472 Sum_probs=245.1
Q ss_pred CCCCChHHHHHhhccccccccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHhccCCCCcCCCCCHHH
Q psy1343 1 ALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPID 80 (337)
Q Consensus 1 ~L~~~~~l~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~i~p~~~~~~l~~~~~~~f~~~~QqDa~E 80 (337)
||+|+|+||+|++...+....... .....+++++|+.|++.||.... ...++|..|+.+++.. .+.|.++.||||||
T Consensus 27 ~L~~~~~~r~~~l~~~~~~~~~~~-~~~~~~l~~~l~~l~~~l~~~~~-~~~~~p~~~~~~l~~~-~~~f~~~~QqDa~E 103 (348)
T 3nhe_A 27 CLSNTRELRDYCLQRLYMRDLHHG-SNAHTALVEEFAKLIQTIWTSSP-NDVVSPSEFKTQIQRY-APRFVGYNQQDAQE 103 (348)
T ss_dssp HHHTCHHHHHHHHTTGGGGTSCSS-CCTTHHHHHHHHHHHHHHTTCCT-TCEECCHHHHHHHHHH-SGGGSSSCCBCHHH
T ss_pred HHhcCHHHHHHHhcchhhHhhccC-CCcccHHHHHHHHHHHHHHcCCC-CCccCHHHHHHHHHHh-hhhhCCCCccCHHH
Confidence 689999999999987665444332 23457899999999999995332 6799999999999876 78999999999999
Q ss_pred HHHHHHHHHHHHhccCCC---------------------------CCCCcceeccCCeEeeeeecCCCcchhHhhhhhcc
Q psy1343 81 FLSWFLNTLHRALNGTKK---------------------------KDSSIVYKTFLGSMKVKTRKIPPVELEEKVRQRLL 133 (337)
Q Consensus 81 fl~~ll~~l~~~~~~~~~---------------------------~~~~~i~~~F~g~~~~~~~~~~~~~~~~~~~~~~~ 133 (337)
||.+|||.|+++++.... ...++|.++|+|++. +.++
T Consensus 104 fl~~lLd~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~----------------~~~~ 167 (348)
T 3nhe_A 104 FLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLK----------------SSLT 167 (348)
T ss_dssp HHHHHHHHHHHHHCSCSSCCCCCCCCCTTSCHHHHHHHHHHHHHTTCCCHHHHHHCEEEE----------------EEEE
T ss_pred HHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHhhcCCccccccceEEE----------------EEEE
Confidence 999999999999875432 234668999999999 6678
Q ss_pred ccccCceeeeeecceeeeccCCCCCCccccccccCCCcccHHHHHhhhcccc---------hhhhcccccceeEEEEeec
Q psy1343 134 LTEEYKETETESPFLYLTCDLPPPPLFKDEVLENIIPQVNLYTILTKFNNES---------EKEYKTYKENFLKRFEITS 204 (337)
Q Consensus 134 C~~C~~~s~~~e~f~~lsl~ip~~~~~~~~~~~~~~~~~sl~~~L~~~~~~~---------~~~c~~~~~~~~k~~~i~~ 204 (337)
|..|++.+.+.|+|+.|+|++|.... +.++|++||+.|+..+ |..|+.. +.+.|+..|.+
T Consensus 168 C~~C~~~s~~~e~f~~LsL~i~~~~~----------~~~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~-~~~~k~~~i~~ 236 (348)
T 3nhe_A 168 CTDCGYCSTVFDPFWDLSLPIAKRGY----------PEVTLMDCMRLFTKEDVLDGDEKPTCCRCRGR-KRCIKKFSIQR 236 (348)
T ss_dssp ETTTCCEEEEEEEESSEEECCCSSCS----------SCEEHHHHHHHHHSCEEECGGGCCEETTTTEE-CCEEEEEEEEE
T ss_pred cCCCCCEeeeeccceEEeeeCCCccc----------CCCCHHHHHHHhcCceEecCCCceECCCCCCc-ccEEEEEEeec
Confidence 99999999999999999999987531 2469999999997653 7788776 89999999999
Q ss_pred CCCceEEEEeeeccCCcccccCCceEeeCCCCCCCCCCCCchhhhhcchhhhhhhhccCCCcceeEeEEEEeecCCCCCe
Q psy1343 205 LPPYLILYVKRFTKNTFFVEKNPTIVNFPVKNVDFGDILTPEVKAKYESTMYDLVKAKYESTMYDLVANIVHDGEPSNGT 284 (337)
Q Consensus 205 lP~~Lii~l~Rf~~~~~~~~K~~~~v~fp~~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avi~H~G~~~~GH 284 (337)
+|++|+|||+||.+..+...|+...|.||++.|||++|+.... ....|+|+|||+|.|++++||
T Consensus 237 lP~vL~i~lkRf~~~~~~~~K~~~~v~fp~~~ldl~~~~~~~~----------------~~~~Y~L~avv~H~G~~~~GH 300 (348)
T 3nhe_A 237 FPKILVLHLKRFSESRIRTSKLTTFVNFPLRDLDLREFASENT----------------NHAVYNLYAVSNHSGTTMGGH 300 (348)
T ss_dssp CCSEEEEEECCBCCCSSCCCBCCCCEECCSSCEECGGGBCTTC----------------CCCEEEEEEEEEEEECSSCEE
T ss_pred CCceEEEEEEcccccCCceeecCcceeccCCcCCHhhhcCCCC----------------CCCcEEEEEEEEccCCCCCcc
Confidence 9999999999999888888899999999976799999987543 567899999999999989999
Q ss_pred EEEEEEeCCCCcEEEecCCcccccCccccccCCcEEEEEEecCCCCC
Q psy1343 285 YRVHLYHKGIGKWYEIQDLHVTDILPQMITLTEAYIQIYELRTTPSP 331 (337)
Q Consensus 285 Y~a~vk~~~~~~W~~~nD~~V~~v~~~~v~~~~aYiLfY~r~~~~~~ 331 (337)
|+||+|++.+++||+|||+.|+++++++|....||||||+|++.+++
T Consensus 301 Y~~~~~~~~~~~W~~~nD~~V~~v~~~~v~~~~aY~LfY~r~~~~~~ 347 (348)
T 3nhe_A 301 YTAYCRSPGTGEWHTFNDSSVTPMSSSQVRTSDAYLLFYELASPPSR 347 (348)
T ss_dssp EEEEEECTTTCCEEEEETTEEEEECGGGTCCTTEEEEEEEECC----
T ss_pred cEEEEccCCCCcEEEEeCCCceECCHHHcCCCCceEEEEEecCCCCC
Confidence 99999997789999999999999999999999999999999987654
No 3
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A
Probab=100.00 E-value=9.5e-60 Score=444.24 Aligned_cols=280 Identities=26% Similarity=0.424 Sum_probs=243.9
Q ss_pred CCCCChHHHHHhhccccccccCCC-CCCCchHHHHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHhccCCCCcCCCCCHH
Q psy1343 1 ALCHVTPLRDYFLREINYARVKRP-PGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPI 79 (337)
Q Consensus 1 ~L~~~~~l~~~~l~~~~~~~~~~~-~~~~~~~l~~~l~~l~~~l~~~~~~~~~i~p~~~~~~l~~~~~~~f~~~~QqDa~ 79 (337)
||+|+|+||+||+...+....+.. +....++++++|+.|++.||.++ ...++|..|+.+++.. ++.|.++.|||||
T Consensus 80 ~L~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~--~~~i~P~~f~~~l~~~-~~~f~~~~QqDA~ 156 (396)
T 2gfo_A 80 CLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQ--YRYISPKDFKITIGKI-NDQFAGYSQQDSQ 156 (396)
T ss_dssp HHHTCHHHHHHHHTTTHHHHCCTTCTTSCTTHHHHHHHHHHHHHHHSC--EEEECCHHHHHHHHHH-CGGGSSSSCCCHH
T ss_pred HhhCCHHHHHHHHcCcchhhhcccCCCCcccHHHHHHHHHHHHHHcCC--CceECHHHHHHHHHHh-chhhcCCCCCChH
Confidence 689999999999987655443322 22234689999999999999987 6789999999999876 7999999999999
Q ss_pred HHHHHHHHHHHHHhccCCC---------------------------CCCCcceeccCCeEeeeeecCCCcchhHhhhhhc
Q psy1343 80 DFLSWFLNTLHRALNGTKK---------------------------KDSSIVYKTFLGSMKVKTRKIPPVELEEKVRQRL 132 (337)
Q Consensus 80 Efl~~ll~~l~~~~~~~~~---------------------------~~~~~i~~~F~g~~~~~~~~~~~~~~~~~~~~~~ 132 (337)
|||.+|||.|+++++.... ...++|.++|+|+++ +.+
T Consensus 157 EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~~~s~I~~lF~G~l~----------------s~i 220 (396)
T 2gfo_A 157 ELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQFK----------------STV 220 (396)
T ss_dssp HHHHHHHHHHHHHHCCCCC---------TTSCHHHHHHHHHHHHHHHCCSHHHHHHCEEEE----------------EEE
T ss_pred HHHHHHHHHHHHHHhhhccccccccccccccchhhHHHHHHHHhhhccCCccchhhCcEEE----------------EEE
Confidence 9999999999999875421 135789999999999 667
Q ss_pred cccccCceeeeeecceeeeccCCCCCCccccccccCCCcccHHHHHhhhcccc---------hhhhcccccceeEEEEee
Q psy1343 133 LLTEEYKETETESPFLYLTCDLPPPPLFKDEVLENIIPQVNLYTILTKFNNES---------EKEYKTYKENFLKRFEIT 203 (337)
Q Consensus 133 ~C~~C~~~s~~~e~f~~lsl~ip~~~~~~~~~~~~~~~~~sl~~~L~~~~~~~---------~~~c~~~~~~~~k~~~i~ 203 (337)
+|..|+..+.+.|+|++|+|+||... ..+|++||+.|+..| |+.|+.. +.+.|+..|.
T Consensus 221 ~C~~C~~~s~~~e~f~~LsL~ip~~~------------~~sL~~~L~~f~~~E~l~~~n~~~C~~C~~~-~~a~k~~~i~ 287 (396)
T 2gfo_A 221 QCLTCHKKSRTFEAFMYLSLPLASTS------------KCTLQDCLRLFSKEEKLTDNNRFYCSHCRAR-RDSLKKIEIW 287 (396)
T ss_dssp EETTTCCEEEEEEEESSEEECCSCSS------------EEEHHHHHHHHTSCEEECSTTCEEETTTTEE-ECEEEEEEEE
T ss_pred EeCCCCceecccccceeeeecccccc------------cCCHHHHHHHhCCcccccCCcccccCCcccc-cceEEEEEEe
Confidence 89999999999999999999999753 358999999998653 7888876 8899999999
Q ss_pred cCCCceEEEEeeeccCCcccccCCceEeeCCCCCCCCCCCCchhhhhcchhhhhhhhccCCCcceeEeEEEEeecCCCCC
Q psy1343 204 SLPPYLILYVKRFTKNTFFVEKNPTIVNFPVKNVDFGDILTPEVKAKYESTMYDLVKAKYESTMYDLVANIVHDGEPSNG 283 (337)
Q Consensus 204 ~lP~~Lii~l~Rf~~~~~~~~K~~~~v~fp~~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avi~H~G~~~~G 283 (337)
++|+||+|||+||.+++.+..|++..|.||++.|||++|+..+.. ....|+|+|||+|.|++++|
T Consensus 288 ~lP~vLiihLkRF~~~~~~~~K~~~~v~fp~~~Ldl~~~~~~~~~---------------~~~~Y~L~avv~H~G~~~~G 352 (396)
T 2gfo_A 288 KLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLENLDLSQYVIGPKN---------------NLKKYNLFSVSNHYGGLDGG 352 (396)
T ss_dssp ECCSEEEEEECCEEECSSSEEECCCEEECCSSCBCCGGGBCSCCS---------------SCCCBEEEEEEEEESCTTTC
T ss_pred cCCcEEEEEecceeccCccceecCceEecchhhccccccccCCCC---------------CCceEEEEEEEEecCCCCCC
Confidence 999999999999998877778999999999767999999875321 45789999999999998999
Q ss_pred eEEEEEEeCCCCcEEEecCCcccccCccccccCCcEEEEEEecC
Q psy1343 284 TYRVHLYHKGIGKWYEIQDLHVTDILPQMITLTEAYIQIYELRT 327 (337)
Q Consensus 284 HY~a~vk~~~~~~W~~~nD~~V~~v~~~~v~~~~aYiLfY~r~~ 327 (337)
||+||+|+..+++||+|||+.|+++++++|....||||||+|++
T Consensus 353 HY~a~v~~~~~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r~~ 396 (396)
T 2gfo_A 353 HYTAYCKNAARQRWFKFDDHEVSDISVSSVKSSAAYILFYTSLG 396 (396)
T ss_dssp EEEEEEEETTTTEEEEEETTEEEECCHHHHSCTTEEEEEEECC-
T ss_pred ceEEEEcCCCCCCEEEEeCCCeEECCHHHcCCCCceEEEEEEcC
Confidence 99999999767999999999999999999999999999999974
No 4
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A
Probab=100.00 E-value=2.2e-58 Score=428.91 Aligned_cols=283 Identities=23% Similarity=0.382 Sum_probs=234.9
Q ss_pred CCCCChHHHHHhhccccccccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHhccCCCCcCCCCCHHH
Q psy1343 1 ALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPID 80 (337)
Q Consensus 1 ~L~~~~~l~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~i~p~~~~~~l~~~~~~~f~~~~QqDa~E 80 (337)
||+|+|+||+|++...+..... ......+++++|+.|+..||.+.. ...++|..|+.++... .+.|.++.||||||
T Consensus 21 ~L~~~~~~~~~~l~~~~~~~~~--~~~~~~~l~~~l~~l~~~l~~~~~-~~~v~p~~~~~~l~~~-~~~f~~~~QqDA~E 96 (355)
T 3i3t_A 21 CLSSTRPLRDFCLRRDFRQEVP--GGGRAQELTEAFADVIGALWHPDS-CEAVNPTRFRAVFQKY-VPSFSGYSQQDAQE 96 (355)
T ss_dssp HHHTCHHHHHHHHHTTHHHHC--------CHHHHHHHHHHHHTSSCSS-CCCBCCHHHHHHHHHH-CGGGCSSCCCBHHH
T ss_pred HHhCCHHHHHHHHhchHHHhcC--CCCchhHHHHHHHHHHHHHhcCCC-CCcccHHHHHHHHHHh-ChhhCCCCccCHHH
Confidence 6899999999999866543322 222346899999999999999863 3689999999999776 79999999999999
Q ss_pred HHHHHHHHHHHHhccCCCC------------------------------------------CCCcceeccCCeEeeeeec
Q psy1343 81 FLSWFLNTLHRALNGTKKK------------------------------------------DSSIVYKTFLGSMKVKTRK 118 (337)
Q Consensus 81 fl~~ll~~l~~~~~~~~~~------------------------------------------~~~~i~~~F~g~~~~~~~~ 118 (337)
||.+|||.||++++...+. ..++|.++|+|++.
T Consensus 97 fl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~----- 171 (355)
T 3i3t_A 97 FLKLLMERLHLEINRRGRRAPPILANGPVPSPPRRGGALLEEPELSDDDRANLMWKRYLEREDSKIVDLFVGQLK----- 171 (355)
T ss_dssp HHHHHHHHHHHHHCCC----------------------------CCHHHHHHHHHHHHHHHCCSHHHHHHCEEEE-----
T ss_pred HHHHHHHHHHHHHhhhccCCCcccccCcccCccccccccccCCCCCHHHHHHHHHHHhhhccCCcccccccEEEE-----
Confidence 9999999999998764321 23568999999999
Q ss_pred CCCcchhHhhhhhccccccCceeeeeecceeeeccCCCCCCccccccccCCCcccHHHHHhhhcccc---------hhhh
Q psy1343 119 IPPVELEEKVRQRLLLTEEYKETETESPFLYLTCDLPPPPLFKDEVLENIIPQVNLYTILTKFNNES---------EKEY 189 (337)
Q Consensus 119 ~~~~~~~~~~~~~~~C~~C~~~s~~~e~f~~lsl~ip~~~~~~~~~~~~~~~~~sl~~~L~~~~~~~---------~~~c 189 (337)
+.+.|..|+..+.+.++|+.|+|++|..... .+.++|++||+.|+..+ |..|
T Consensus 172 -----------~~~~C~~C~~~s~~~e~f~~lsl~i~~~~~~--------~~~~sl~~~L~~~~~~e~l~~~n~~~C~~C 232 (355)
T 3i3t_A 172 -----------SCLKCQACGYRSTTFEVFCDLSLPIPKKGFA--------GGKVSLRDCFNLFTKEEELESENAPVCDRC 232 (355)
T ss_dssp -----------EEEEETTTCCEEEEEEEESSEEECCCC---------------CBHHHHHHHHHCCEEECGGGCCCCSSS
T ss_pred -----------eeEEeCCCCCCceeeccceeecccCCccccc--------cCccCHHHHHHHhCCccccCCCCCeeCCCC
Confidence 6678999999999999999999999975311 12469999999987654 7788
Q ss_pred cccccceeEEEEeecCCCceEEEEeeeccCCcccccCCceEeeCCCCCCCCCCCCchhhhhcchhhhhhhhccCCCccee
Q psy1343 190 KTYKENFLKRFEITSLPPYLILYVKRFTKNTFFVEKNPTIVNFPVKNVDFGDILTPEVKAKYESTMYDLVKAKYESTMYD 269 (337)
Q Consensus 190 ~~~~~~~~k~~~i~~lP~~Lii~l~Rf~~~~~~~~K~~~~v~fp~~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~ 269 (337)
+.. +.+.|+..|.++|+||+|||+||.++.+...|++..|.||++.|||.+|+.... ....|+
T Consensus 233 ~~~-~~a~k~~~i~~lP~vL~i~lkRF~~~~~~~~K~~~~v~fp~~~l~l~~~~~~~~----------------~~~~Y~ 295 (355)
T 3i3t_A 233 RQK-TRSTKKLTVQRFPRILVLHLNRFSASRGSIKKSSVGVDFPLQRLSLGDFASDKA----------------GSPVYQ 295 (355)
T ss_dssp CCC-CCEEEEEEEEECCSEEEEEECCEECCSSCCEECCCCCBCCSSCEECGGGBC--------------------CCEEE
T ss_pred CCc-cceEEEEEcccCChheEEEhhheecCCCCceECCcceeCCccccCchhhccCCC----------------CCcceE
Confidence 876 899999999999999999999999988888899999999987799999987543 567899
Q ss_pred EeEEEEeecCCCCCeEEEEEEeCCCCcEEEecCCcccccCccccccCCcEEEEEEecCCCC
Q psy1343 270 LVANIVHDGEPSNGTYRVHLYHKGIGKWYEIQDLHVTDILPQMITLTEAYIQIYELRTTPS 330 (337)
Q Consensus 270 L~avi~H~G~~~~GHY~a~vk~~~~~~W~~~nD~~V~~v~~~~v~~~~aYiLfY~r~~~~~ 330 (337)
|+|||+|.|++++|||+||+|. ++.||+|||+.|+++++++|.+..||||||+|++.+.
T Consensus 296 L~avv~H~G~~~~GHY~~~~~~--~~~W~~~nD~~V~~v~~~~v~~~~aYiLfY~r~~~~~ 354 (355)
T 3i3t_A 296 LYALCNHSGSVHYGHYTALCRC--QTGWHVYNDSRVSPVSENQVASSEGYVLFYQLMQEPP 354 (355)
T ss_dssp EEEEEEEEEETTEEEEEEEEEE--TTEEEEEETTEEEEECHHHHHTSCCSEEEEEEC----
T ss_pred EEEEEEecCCCCCCeEEEEEEc--CCeEEEEcCCCcEECCHHHcCCCCcEEEEEEeccCCC
Confidence 9999999999999999999998 4779999999999999999999999999999998664
No 5
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A
Probab=100.00 E-value=3.1e-56 Score=421.84 Aligned_cols=299 Identities=23% Similarity=0.276 Sum_probs=233.2
Q ss_pred CCCCChHHHHHhhccccccccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHhccCCCC------cCC
Q psy1343 1 ALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEMLQAVVLWSRKQFQ------FTE 74 (337)
Q Consensus 1 ~L~~~~~l~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~i~p~~~~~~l~~~~~~~f~------~~~ 74 (337)
||+|+|+||++|+........ ..+.....+++++|++||..||.+. ..++|..|+.+++.. .+.|. ++.
T Consensus 32 ~L~~~~~~~~~l~~~~~~~~~-~~~~~~~~~l~~~l~~lf~~l~~~~---~~v~P~~~~~~l~~~-~~~f~~~~~~~~~~ 106 (404)
T 2ayn_A 32 CIRSVPELKDALKRYAGALRA-SGEMASAQYITAALRDLFDSMDKTS---SSIPPIILLQFLHMA-FPQFAEKGEQGQYL 106 (404)
T ss_dssp HHHTCHHHHHHHHTCCCCC-------CHHHHHHHHHHHHHHHHHHHC---SEECCHHHHHHHHHH-CGGGGCBCTTSCBC
T ss_pred HHHcCHHHHHHHHhccccccc-CCCCCcccHHHHHHHHHHHHHhcCC---CcCChHHHHHHHHHh-CchhhccccCCCcc
Confidence 689999999999886533111 1112335789999999999999864 689999999999876 68887 589
Q ss_pred CCCHHHHHHHHHHHHHHHhccCC-----------------CCCCCcceeccCCeEeeeeecCCCcchhHhhhhhcccccc
Q psy1343 75 QSDPIDFLSWFLNTLHRALNGTK-----------------KKDSSIVYKTFLGSMKVKTRKIPPVELEEKVRQRLLLTEE 137 (337)
Q Consensus 75 QqDa~Efl~~ll~~l~~~~~~~~-----------------~~~~~~i~~~F~g~~~~~~~~~~~~~~~~~~~~~~~C~~C 137 (337)
||||||||.+|||.|++++.... ....++|.++|+|++. +.++|..|
T Consensus 107 QqDA~Efl~~lLd~L~~~~~~~~~~~~~e~~~~~~~~~~~~~~~s~i~~~F~G~l~----------------s~i~C~~C 170 (404)
T 2ayn_A 107 QQDANECWIQMMRVLQQKLEAIEDDSVKETDSSSASAATPSKKKSLIDQFFGVEFE----------------TTMKCTES 170 (404)
T ss_dssp CCCHHHHHHHHHHHHHTTSCCCCCC------------------CCHHHHHTCEEEE----------------EEEEESSS
T ss_pred ccCHHHHHHHHHHHHHHHhccccCCcccccchhhhhhhhccccCchhhhhccEEEE----------------EEEEecCC
Confidence 99999999999999999986543 1245789999999999 66789999
Q ss_pred Ccee--eeeecceeeeccCCCCCCccccccccCCCcccHHHHHhhhcccc----hhhhcccccceeEEEEeecCCCceEE
Q psy1343 138 YKET--ETESPFLYLTCDLPPPPLFKDEVLENIIPQVNLYTILTKFNNES----EKEYKTYKENFLKRFEITSLPPYLIL 211 (337)
Q Consensus 138 ~~~s--~~~e~f~~lsl~ip~~~~~~~~~~~~~~~~~sl~~~L~~~~~~~----~~~c~~~~~~~~k~~~i~~lP~~Lii 211 (337)
+..+ .+.|+|+.|+|+||... .+|++||+.|+.++ |..|+.. ..+.|+..|.++|+||+|
T Consensus 171 ~~~s~s~~~e~f~~Lsl~i~~~~-------------~~l~~~L~~~~~e~l~~~c~~c~~~-~~~~k~~~i~~lP~vL~i 236 (404)
T 2ayn_A 171 EEEEVTKGKENQLQLSCFINQEV-------------KYLFTGLKLRLQEEITKQSPTLQRN-ALYIKSSKISRLPAYLTI 236 (404)
T ss_dssp CCCCCBCCEEEESSEEEECSSSC-------------CBHHHHHHHTTEECCCCEETTTTEE-CCEEEEEEEEECCSSEEE
T ss_pred CCccCceeeccCceEEeecCCCc-------------ccHHHHHHHhcccceeecchhhCCc-cceeeeeeHhhCCCceEE
Confidence 9984 79999999999998752 27999999988643 7888776 889999999999999999
Q ss_pred EEeeeccCCc--ccccCCceEeeCCCCCCCCCCCCchhhhhcchhhh----------h----------------------
Q psy1343 212 YVKRFTKNTF--FVEKNPTIVNFPVKNVDFGDILTPEVKAKYESTMY----------D---------------------- 257 (337)
Q Consensus 212 ~l~Rf~~~~~--~~~K~~~~v~fp~~~Ldl~~~~~~~~~~~~~~~~~----------~---------------------- 257 (337)
||+||.++.. ...|++..|.|| ..|||.+|+..+.......... +
T Consensus 237 ~LkRF~~~~~~~~~~Ki~~~v~fP-~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 315 (404)
T 2ayn_A 237 QMVRFFYKEKESVNAKVLKDVKFP-LMLDMYELCTPELQEKMVSFRSKFKDLEDKKVNQQPNTSDKKSSPQKEVKYEPFS 315 (404)
T ss_dssp EEECBCCCCSSSSCCBCCCCCBCC-SEEECGGGBCHHHHHHTTTTTGGGTCTTC----------------------CCCC
T ss_pred EEEEEEEecccCceeccCceeccC-ceeEHhHhcChhhhhhcchhhhHHhhhhcccchhhhhhccccccccccccccccc
Confidence 9999998753 568999999999 5899999998753321100000 0
Q ss_pred --hhhccCCCcceeEeEEEEeecC-CCCCeEEEEEEeCCCCcEEEecCCcccccCccccccCC-------cEEEEEEecC
Q psy1343 258 --LVKAKYESTMYDLVANIVHDGE-PSNGTYRVHLYHKGIGKWYEIQDLHVTDILPQMITLTE-------AYIQIYELRT 327 (337)
Q Consensus 258 --~~~~~~~~~~Y~L~avi~H~G~-~~~GHY~a~vk~~~~~~W~~~nD~~V~~v~~~~v~~~~-------aYiLfY~r~~ 327 (337)
..........|+|+|||+|.|. +++|||+||||+. +++||+|||+.|+++++++|.... ||||||+|++
T Consensus 316 ~~~~~~~~~~~~Y~L~avv~H~G~s~~~GHY~a~v~~~-~~~W~~fnD~~V~~v~~~~v~~~~~g~~~~~aYiLfY~r~~ 394 (404)
T 2ayn_A 316 FADDIGSNNCGYYDLQAVLTHQGRSSSSGHYVSWVKRK-QDEWIKFDDDKVSIVTPEDILRLSGGGDWHIAYVLLYGPRR 394 (404)
T ss_dssp CSCTTTTCCCSEEEEEEEEEEESSSTTSSEEEEEEEEE-TTEEEEEBTTBCCCBCHHHHGGGGSSSSSCEEEEEEEECC-
T ss_pred cccccCcCCCceEEEEEEEEecCCCCCCCCeEEEEECC-CCeEEEeecccceecCHHHHHhhhCCCCCceEEEEEEEecC
Confidence 0001234689999999999995 8999999999984 799999999999999999998655 9999999999
Q ss_pred CCCCCCCCC
Q psy1343 328 TPSPTAMSE 336 (337)
Q Consensus 328 ~~~~~~~~~ 336 (337)
...+++.++
T Consensus 395 ~~~~~~~~~ 403 (404)
T 2ayn_A 395 VEIMEEESE 403 (404)
T ss_dssp ---------
T ss_pred CCCCCCCCC
Confidence 877766543
No 6
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A
Probab=100.00 E-value=3.1e-54 Score=400.87 Aligned_cols=267 Identities=20% Similarity=0.253 Sum_probs=221.7
Q ss_pred CCCCChHHHHHhhccccccccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHhccCCCCcCCCCCHHH
Q psy1343 1 ALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPID 80 (337)
Q Consensus 1 ~L~~~~~l~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~i~p~~~~~~l~~~~~~~f~~~~QqDa~E 80 (337)
||+|+|+||++++...... .....++.++|++||..||.+. .+++|..|+..+. .+.|.++.||||||
T Consensus 24 ~L~~~~~~r~~~~~~~~~~------~~~~~~~~~~l~~lf~~l~~~~---~~~~~~~l~~~~~---~~~~~~~~QqDA~E 91 (353)
T 1nb8_A 24 TLFFTNQLRKAVYMMPTEG------DDSSKSVPLALQRVFYELQHSD---KPVGTKKLTKSFG---WETLDSFMQHDVQE 91 (353)
T ss_dssp HHHTCHHHHHHHHTSCCTT------SCTTTCHHHHHHHHHHHHHHCS---SCBCCHHHHHHHT---CCBTTTTTTSCHHH
T ss_pred HHHCCHHHHHHHHhCCCCC------CcccccHHHHHHHHHHHHhhcC---CCCCCHHHHhhcC---CCCCCcccchhHHH
Confidence 6899999999997643211 1123479999999999999875 4789999998773 47899999999999
Q ss_pred HHHHHHHHHHHHhccCCCCCCCcceeccCCeEeeeeecCCCcchhHhhhhhccccccCceeeeeecceeeeccCCCCCCc
Q psy1343 81 FLSWFLNTLHRALNGTKKKDSSIVYKTFLGSMKVKTRKIPPVELEEKVRQRLLLTEEYKETETESPFLYLTCDLPPPPLF 160 (337)
Q Consensus 81 fl~~ll~~l~~~~~~~~~~~~~~i~~~F~g~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~s~~~e~f~~lsl~ip~~~~~ 160 (337)
||.+|||.|++++... ...++|.++|+|++. +.+.|..|+..+.+.|+|++|+|+||...
T Consensus 92 Fl~~LLd~L~~~~~~~--~~~s~i~~~F~g~~~----------------~~i~C~~C~~~s~~~e~f~~LsL~i~~~~-- 151 (353)
T 1nb8_A 92 LCRVLLDNVENKMKGT--CVEGTIPKLFRGKMV----------------SYIQCKEVDYRSDRREDYYDIQLSIKGKK-- 151 (353)
T ss_dssp HHHHHHHHHHHHTTTS--TTTTHHHHHHCEEEE----------------EEEEESSSCCEEEEEEEESCEEECCTTCS--
T ss_pred HHHHHHHHHHHHhcCC--CccchhhhhceeEEE----------------EEEEeccCCCeeceeeeeEEEEEEECCCc--
Confidence 9999999999988643 245789999999999 66789999999999999999999998653
Q ss_pred cccccccCCCcccHHHHHhhhcccc---------hhhhcccccceeEEEEeecCCCceEEEEeeeccCC--cccccCCce
Q psy1343 161 KDEVLENIIPQVNLYTILTKFNNES---------EKEYKTYKENFLKRFEITSLPPYLILYVKRFTKNT--FFVEKNPTI 229 (337)
Q Consensus 161 ~~~~~~~~~~~~sl~~~L~~~~~~~---------~~~c~~~~~~~~k~~~i~~lP~~Lii~l~Rf~~~~--~~~~K~~~~ 229 (337)
+|.+||+.|+..+ |..|+ .+.+.|+..|.++|+||+|||+||.++. +...|++..
T Consensus 152 ------------~l~~~L~~~~~~E~l~~~~~~~C~~c~--~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~K~~~~ 217 (353)
T 1nb8_A 152 ------------NIFESFVDYVAVEQLDGDNKYDAGEHG--LQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDR 217 (353)
T ss_dssp ------------BHHHHHHHHTCCEEECTTTCEECGGGC--EECEEEEEEESCCCSEEEEEECCCC--------CCCCCC
T ss_pred ------------chHHHHHHhhCccccCCCccccCCcCc--cEeeEEEEEhhcCCCceEEEEecEEEecccCceEecCcE
Confidence 7999999987654 55553 2778999999999999999999999764 456799999
Q ss_pred EeeCCCCCCCCCCCCchhhhhcchhhhhhhhccCCCcceeEeEEEEeecCCCCCeEEEEEEeCCCCcEEEecCCcccccC
Q psy1343 230 VNFPVKNVDFGDILTPEVKAKYESTMYDLVKAKYESTMYDLVANIVHDGEPSNGTYRVHLYHKGIGKWYEIQDLHVTDIL 309 (337)
Q Consensus 230 v~fp~~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avi~H~G~~~~GHY~a~vk~~~~~~W~~~nD~~V~~v~ 309 (337)
|.|| ..|||.+|+..... .....|+|+|||+|.|++++|||+||+|+..+++||+|||+.|++++
T Consensus 218 v~fp-~~Ldl~~~~~~~~~--------------~~~~~Y~L~avv~H~G~~~~GHY~a~v~~~~~~~W~~fnD~~V~~v~ 282 (353)
T 1nb8_A 218 FEFP-EQLPLDEFLQKTDP--------------KDPANYILHAVLVHSGDNHGGHYVVYLNPKGDGKWCKFDDDVVSRCT 282 (353)
T ss_dssp CBCC-SEEECGGGBSSCCT--------------TSCCEEEEEEEEEEESSTTCCCEEEEECTTSSSCCEEEETTEEEECC
T ss_pred EECC-CeeehhhhhcccCC--------------CCCceEEEEEEEEEeCCCCCcEEEEEEecCCCCCEEEEECcceEECC
Confidence 9999 58999999875321 14678999999999999999999999997668999999999999999
Q ss_pred cccccc---------------CCcEEEEEEecCC
Q psy1343 310 PQMITL---------------TEAYIQIYELRTT 328 (337)
Q Consensus 310 ~~~v~~---------------~~aYiLfY~r~~~ 328 (337)
+++|.. ..||||||+|++.
T Consensus 283 ~~~v~~~~~gg~~~~~~~~~~~~aYiLfY~r~~~ 316 (353)
T 1nb8_A 283 KEEAIEHNYGGHDDDLSVRHCTNAYMLVYIRESK 316 (353)
T ss_dssp HHHHTGGGSCCC-------CCEEEEEEEEEETTT
T ss_pred HHHHHHHhcCCCccccccCcCCeEEEEEEEECch
Confidence 988763 6799999999875
No 7
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9
Probab=100.00 E-value=2.3e-54 Score=410.36 Aligned_cols=286 Identities=22% Similarity=0.256 Sum_probs=229.5
Q ss_pred CCCCChHHHHHhhccccccccCCCCC---CCchHHHHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHhccCCCC------
Q psy1343 1 ALCHVTPLRDYFLREINYARVKRPPG---DSSFLLVQRFGELMRKLWNPRNFKSHVSPHEMLQAVVLWSRKQFQ------ 71 (337)
Q Consensus 1 ~L~~~~~l~~~~l~~~~~~~~~~~~~---~~~~~l~~~l~~l~~~l~~~~~~~~~i~p~~~~~~l~~~~~~~f~------ 71 (337)
||+++|+||++++..........+.+ ....+++++|++||..||.+. ...++|..|+.+++.. .+.|.
T Consensus 42 ~L~~~p~fr~~ll~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~--~~~v~p~~~~~~l~~~-~~~f~~~~~~~ 118 (415)
T 1vjv_A 42 ALYRVNDLRDMILNYNPSQGVSNSGAQDEEIHKQIVIEMKRCFENLQNKS--FKSVLPVVLLNTLRKC-YPQFAERDSQG 118 (415)
T ss_dssp HHHHSHHHHHHHHTCCGGGCCSCTTSTTHHHHHHHHHHHHHHHHHHHCC---CCEECCHHHHHHHHHH-CGGGGCBC---
T ss_pred HHHcCHHHHHHHHhcccccccCCcccccccchhHHHHHHHHHHHHHhcCC--CCccCHHHHHHHHHHh-CchhhccccCC
Confidence 68999999999998664433221111 014689999999999999986 6799999999999876 68898
Q ss_pred -cCCCCCHHHHHHHHHHHHHHHhccCCCCCCCcceeccCCeEeeeeecCCCcchhHhhhhhccccccCcee--eeeecce
Q psy1343 72 -FTEQSDPIDFLSWFLNTLHRALNGTKKKDSSIVYKTFLGSMKVKTRKIPPVELEEKVRQRLLLTEEYKET--ETESPFL 148 (337)
Q Consensus 72 -~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~~~i~~~F~g~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~s--~~~e~f~ 148 (337)
++.||||+|||.+||+.|++++.. ++|.++|+ ++. +.++|..|+..+ .+.|+|+
T Consensus 119 ~~~~QqDa~Efl~~lLd~L~~~~~~------~~i~~~F~-~~~----------------~~~~C~~C~~~s~s~~~e~f~ 175 (415)
T 1vjv_A 119 GFYKQQDAEELFTQLFHSMSIVFGD------KFSEDFRI-QFK----------------TTIKDTANDNDITVKENESDS 175 (415)
T ss_dssp -CBCCCCHHHHHHHHHHHHHHHHTH------HHHTTTCE-EEE----------------EEEEETTEEEEEEEECCCEES
T ss_pred CCccccCHHHHHHHHHHHHHHHhcc------chHHHHHH-hhe----------------EEEEECCCCCCccccccccce
Confidence 899999999999999999999843 67999999 998 667899999986 5999999
Q ss_pred eeeccCCCCCCccccccccCCCcccHHHHHhhhcccc----hhhhcccccceeEEEEeecCCCceEEEEeeeccCC--cc
Q psy1343 149 YLTCDLPPPPLFKDEVLENIIPQVNLYTILTKFNNES----EKEYKTYKENFLKRFEITSLPPYLILYVKRFTKNT--FF 222 (337)
Q Consensus 149 ~lsl~ip~~~~~~~~~~~~~~~~~sl~~~L~~~~~~~----~~~c~~~~~~~~k~~~i~~lP~~Lii~l~Rf~~~~--~~ 222 (337)
.|+|+||... .+|++||+.|+.++ |..|+.. ..+.|+..|.++|+||+|||+||.++. +.
T Consensus 176 ~Lsl~i~~~~-------------~~l~~~L~~~~~e~i~~~c~~c~~~-~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~ 241 (415)
T 1vjv_A 176 KLQCHISGTT-------------NFMRNGLLEGLNEKIEKRSDLTGAN-SIYSVEKKISRLPKFLTVQYVRFFWKRSTNK 241 (415)
T ss_dssp CEEECCCTTC-------------CBHHHHHHHHHEEC---------CC-CCEEEEEEEEECBSEEEEEECCEEEETTTTE
T ss_pred eeeecccccc-------------chHHHHHHHHhhhhhhhcccccCCc-ccEEEEEEcccCCCeeEEEEEEEEEeCCCCc
Confidence 9999998753 27999999888754 7788776 889999999999999999999999764 35
Q ss_pred cccCCceEeeCCCCCCCCCCCCchhhhhcch---------------------------------hh--hh----------
Q psy1343 223 VEKNPTIVNFPVKNVDFGDILTPEVKAKYES---------------------------------TM--YD---------- 257 (337)
Q Consensus 223 ~~K~~~~v~fp~~~Ldl~~~~~~~~~~~~~~---------------------------------~~--~~---------- 257 (337)
..|++..|.|| ..|||.+|+..+....... .+ .+
T Consensus 242 ~~Ki~~~V~FP-~~Ldl~~~~~~~~~~~~~~~r~~~~~~~~~~~e~~~~~k~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 320 (415)
T 1vjv_A 242 KSKILRKVVFP-FQLDVADMLTPEYAAEKVKVRDELRKVEKEKNEKEREIKRRKFDPSSSENVMTPREQYETQVALNESE 320 (415)
T ss_dssp EEECCCCCBCC-SEEECGGGBCHHHHHHHHHHHHHHHHHHHHHHHC----------------CCCHHHHHHHHHHHHHHH
T ss_pred chhhcCccCCC-cEeEhHHhcChhhhhhhhhhHHHHHHHhhhhhhhhhhhhhccccccccccccccchhhhhchhhHHhh
Confidence 68999999999 5899999998653210000 00 00
Q ss_pred ---------------hhhccCCCcceeEeEEEEeec-CCCCCeEEEEEEe-CCCCcEEEecCCcccccCccccccCC---
Q psy1343 258 ---------------LVKAKYESTMYDLVANIVHDG-EPSNGTYRVHLYH-KGIGKWYEIQDLHVTDILPQMITLTE--- 317 (337)
Q Consensus 258 ---------------~~~~~~~~~~Y~L~avi~H~G-~~~~GHY~a~vk~-~~~~~W~~~nD~~V~~v~~~~v~~~~--- 317 (337)
..........|+|+|||+|.| ++++|||+||||+ ..+++||+|||+.|+++++++|....
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVv~H~G~s~~~GHY~a~vr~~~~~~~W~~fnD~~V~~v~~~~v~~~~~g~ 400 (415)
T 1vjv_A 321 KDQWLEEYKKHFPPNLEKGENPSCVYNLIGVITHQGANSESGHYQAFIRDELDENKWYKFNDDKVSVVEKEKIESLAGGG 400 (415)
T ss_dssp HHHHHHHHHTTSCTTCCTTBCSSSEEEEEEEEEEESSSTTSSEEEEEEECSSCTTCEEEEETTEEEEECHHHHHGGGCCT
T ss_pred hhhhhhhcccccccccccccCCCceEEEEEEEEecCCCCCCCCEEEEEeCCCCCCcEEEeECCcCeEcCHHHHhhhcCCC
Confidence 001123568899999999999 4899999999998 55899999999999999999998655
Q ss_pred ----cEEEEEEecC
Q psy1343 318 ----AYIQIYELRT 327 (337)
Q Consensus 318 ----aYiLfY~r~~ 327 (337)
||||||+|++
T Consensus 401 ~~~~aYiLfY~r~~ 414 (415)
T 1vjv_A 401 ESDSALILMYKGFG 414 (415)
T ss_dssp TSCEEEEEEEEETT
T ss_pred CcceEEEEEEEecC
Confidence 9999999986
No 8
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=100.00 E-value=3.4e-53 Score=409.07 Aligned_cols=286 Identities=21% Similarity=0.336 Sum_probs=233.0
Q ss_pred CCCCChHHHHHhhccccccccCCCCCCCchHHHHHHHHHHHHHhCCCCC-------CCCCChHHHHHHHH---HhccCCC
Q psy1343 1 ALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNF-------KSHVSPHEMLQAVV---LWSRKQF 70 (337)
Q Consensus 1 ~L~~~~~l~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~-------~~~i~p~~~~~~l~---~~~~~~f 70 (337)
||+|+|+||++++........... ....++.++|+++++.||+.... ...+.|..++..+. +. ++.|
T Consensus 159 ~L~~~p~fr~~~l~~~~~~~~~~~--~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~f 235 (476)
T 3mhs_A 159 CLIHNPYFIRHSMSQIHSNNCKVR--SPDKCFSCALDKIVHELYGALNTKQASSSSTSTNRQTGFIYLLTCAWKI-NQNL 235 (476)
T ss_dssp HHHTCHHHHHHHHTTHHHHHCSSC--CTTTCHHHHHHHHHHHHHSCCCC--------CCCSCHHHHHHHHHHHHH-CGGG
T ss_pred HHhCCHHHHHHHHhcchhhhccCC--CcccchHHHHHHHHHHHhhcccccccccccccccCcchHHHHHHHHHHh-cccc
Confidence 689999999999976654333222 22357999999999999986522 12567777666553 44 7999
Q ss_pred CcCCCCCHHHHHHHHHHHHHHHhccCC-----------CCCCCcceeccCCeEeeeeecCCCcchhHhhhhhccccccCc
Q psy1343 71 QFTEQSDPIDFLSWFLNTLHRALNGTK-----------KKDSSIVYKTFLGSMKVKTRKIPPVELEEKVRQRLLLTEEYK 139 (337)
Q Consensus 71 ~~~~QqDa~Efl~~ll~~l~~~~~~~~-----------~~~~~~i~~~F~g~~~~~~~~~~~~~~~~~~~~~~~C~~C~~ 139 (337)
.++.||||||||.+||+.|++++.... ....++|.++|+|+++ +.++|..|+.
T Consensus 236 ~~~~QqDA~EFl~~LLd~L~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~G~l~----------------~~~~C~~C~~ 299 (476)
T 3mhs_A 236 AGYSQQDAHEFWQFIINQIHQSYVLDLPNAKEVSRANNKQCECIVHTVFEGSLE----------------SSIVCPGCQN 299 (476)
T ss_dssp SSSSCEEHHHHHHHHHHHHHHHHHHHCCC-------CCCSCCSHHHHHSCEEEE----------------EEEECTTTCC
T ss_pred CCCCCcCHHHHHHHHHHHHHHHHhhcccccccccccccccCCCcceeecceEEE----------------EEEEECCCCC
Confidence 999999999999999999999875322 2346789999999999 6678999999
Q ss_pred eee-eeecceeeeccCCCCCCccccccccCCCcccHHHHHhhhcccc--------hhhhcccccceeEEEEeecCCCceE
Q psy1343 140 ETE-TESPFLYLTCDLPPPPLFKDEVLENIIPQVNLYTILTKFNNES--------EKEYKTYKENFLKRFEITSLPPYLI 210 (337)
Q Consensus 140 ~s~-~~e~f~~lsl~ip~~~~~~~~~~~~~~~~~sl~~~L~~~~~~~--------~~~c~~~~~~~~k~~~i~~lP~~Li 210 (337)
.+. +.++|+.|+|++|.. .+|++||+.|+..+ |..|+.. +.+.|+..|.++|+||+
T Consensus 300 ~s~~~~e~f~~LsL~i~~~--------------~sl~~~L~~~~~~E~l~~~~~~C~~C~~~-~~a~k~~~i~~lP~vL~ 364 (476)
T 3mhs_A 300 NSKTTIDPFLDLSLDIKDK--------------KKLYECLDSFHKKEQLKDFNYHCGECNST-QDAIKQLGIHKLPSVLV 364 (476)
T ss_dssp CCEEEEEEESCEEECCTTC--------------CBHHHHHHHHHCCEECSSCCCEETTTTEE-CCCEEEEEEEEBCSEEE
T ss_pred eeCCcccchhhhccchhhh--------------hHHHHHHHHhcChhhccCCCCcCCccCCc-ccEEEEEEcccCCcceE
Confidence 964 589999999999864 38999999998653 7778776 88999999999999999
Q ss_pred EEEeeeccC-CcccccCCceEeeCCCCCCCCCCCCchhhhhcchhhhhhhhccCCCcceeEeEEEEeecCCCCCeEEEEE
Q psy1343 211 LYVKRFTKN-TFFVEKNPTIVNFPVKNVDFGDILTPEVKAKYESTMYDLVKAKYESTMYDLVANIVHDGEPSNGTYRVHL 289 (337)
Q Consensus 211 i~l~Rf~~~-~~~~~K~~~~v~fp~~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avi~H~G~~~~GHY~a~v 289 (337)
|||+||.+. ++...|++..|.|| ..|||++|+......... .........|+|+|||+|.|++++|||+||+
T Consensus 365 i~LkRF~~~~~~~~~K~~~~V~fP-~~Ldl~~~~~~~~~~~~~------~~~~~~~~~Y~L~avv~H~G~~~~GHY~a~v 437 (476)
T 3mhs_A 365 LQLKRFEHLLNGSNRKLDDFIEFP-TYLNMKNYCSTKEKDKHS------ENGKVPDIIYELIGIVSHKGTVNEGHYIAFC 437 (476)
T ss_dssp EEECCEEECTTSCEEECCCCCBCC-SEEECGGGBSCCBCCC--------CCCBCCCEEEEEEEEEEEEECSSSEEEEEEE
T ss_pred EEeeeccccCCCCeEECCEEEcCC-CeeechhhcCcccccccc------cccCCCCCcEEEEEEEEeCCCCCCCceEEEE
Confidence 999999965 45678999999999 689999999765432110 0112256789999999999999999999999
Q ss_pred EeCCCCcEEEecCCcccccCccccccCCcEEEEEEecCC
Q psy1343 290 YHKGIGKWYEIQDLHVTDILPQMITLTEAYIQIYELRTT 328 (337)
Q Consensus 290 k~~~~~~W~~~nD~~V~~v~~~~v~~~~aYiLfY~r~~~ 328 (337)
|.. +++||+|||+.|+++++++|....||||||+|++.
T Consensus 438 r~~-~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r~~~ 475 (476)
T 3mhs_A 438 KIS-GGQWFKFNDSMVSSISQEEVLKEQAYLLFYTIRQV 475 (476)
T ss_dssp ECT-TSCEEEEETTEEEEECHHHHTTSCEEEEEEEEEEE
T ss_pred ECC-CCcEEEEeCCceEECCHHHhccCCcEEEEEEEecC
Confidence 974 78999999999999999999999999999999863
No 9
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.7e-51 Score=417.88 Aligned_cols=298 Identities=17% Similarity=0.237 Sum_probs=234.9
Q ss_pred CCCCChHHHHHhhccccccccCCCCCCCchHHHHHHHHHHHHHhCCC------------------CCCCCCChHHHHHHH
Q psy1343 1 ALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPR------------------NFKSHVSPHEMLQAV 62 (337)
Q Consensus 1 ~L~~~~~l~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~------------------~~~~~i~p~~~~~~l 62 (337)
||+|+|+||+||+........ ..+.....++.++|++|+..||+++ .....++|..|+.++
T Consensus 362 ~L~~~p~fr~~ll~~~~~~~~-~~~~~~~~~l~~~l~~L~~~L~s~~~s~~~~~~~~~~~~~~~~~~~~~isP~~f~~~l 440 (854)
T 3ihp_A 362 VLFSIPDFQRKYVDKLEKIFQ-NAPTDPTQDFSTQVAKLGHGLLSGEYSKPVPESGDGERVPEQKEVQDGIAPRMFKALI 440 (854)
T ss_dssp HHTTSHHHHHHHTTTHHHHHH-HCCSCGGGCHHHHHHHHHHHHHSCC---------------------CCBCCHHHHHHH
T ss_pred HHhCcHHHHHHHHhhhhhhhc-cccCCccccHHHHHHHHHHHHhccccccccccccccccccccccCCCccChHHHHHHH
Confidence 689999999999865432111 1223345689999999999999864 235689999999999
Q ss_pred HHhccCCCCcCCCCCHHHHHHHHHHHHHHHhccCCCCCCCcceeccCCeEeeeeecCCCcchhHhhhhhccccccCceee
Q psy1343 63 VLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDSSIVYKTFLGSMKVKTRKIPPVELEEKVRQRLLLTEEYKETE 142 (337)
Q Consensus 63 ~~~~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~~~i~~~F~g~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~s~ 142 (337)
+.. .+.|.+++||||||||.+||+.|++++. ..+++.++|+|+++ ++++|..|++++.
T Consensus 441 ~~~-~~~F~~~~QQDA~EFl~~LLd~L~~el~-----~~s~i~~lF~G~l~----------------s~i~C~~C~~vs~ 498 (854)
T 3ihp_A 441 GKG-HPEFSTNRQQDAQEFFLHLINMVERNCR-----SSENPNEVFRFLVE----------------EKIKCLATEKVKY 498 (854)
T ss_dssp TTT-CTTTTSSSCCBHHHHHHHHHHHHHHTCT-----TSCCGGGGTCEEEE----------------EEEEETTTTEEEE
T ss_pred hhh-ccccccccccCHHHHHHHHHHHHHHHhc-----ccCCchhhcCceEE----------------EEEEecCCCCEeE
Confidence 775 7999999999999999999999999884 34679999999999 6778999999999
Q ss_pred eeecceeeeccCCCCCCccc------------------cccccCCCcccHHHHHhhhcccc------hhhhcccccceeE
Q psy1343 143 TESPFLYLTCDLPPPPLFKD------------------EVLENIIPQVNLYTILTKFNNES------EKEYKTYKENFLK 198 (337)
Q Consensus 143 ~~e~f~~lsl~ip~~~~~~~------------------~~~~~~~~~~sl~~~L~~~~~~~------~~~c~~~~~~~~k 198 (337)
+.++|+.|+|+||....... ...+...+.++|++||+.|+..+ |..|+.. +.+.|
T Consensus 499 t~e~F~~LsL~Ip~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~sL~dcL~~f~~~E~Le~y~C~~C~~k-~~a~K 577 (854)
T 3ihp_A 499 TQRVDYIMQLPVPMDAALNKEELLEYEEKKRQAEEEKMALPELVRAQVPFSSCLEAYGAPEQVDDFWSTALQAK-SVAVK 577 (854)
T ss_dssp EEEEESEEEECCCGGGCTTHHHHHHHHHHHHHHHHTTCCCCCCCCEECCHHHHHHHHHSCEEEEEEEETTTTEE-EEEEE
T ss_pred EeeeceEEEeeCCccccccccchhhhcccccccccccccccccccCCCCHHHHHHHhcCceEeeeeeccccCCc-ceeeE
Confidence 99999999999997532210 00122345689999999998875 7788876 89999
Q ss_pred EEEeecCCCceEEEEeeeccC-CcccccCCceEeeCCCCCCCCCCCCchhhhhcchhhh---------------------
Q psy1343 199 RFEITSLPPYLILYVKRFTKN-TFFVEKNPTIVNFPVKNVDFGDILTPEVKAKYESTMY--------------------- 256 (337)
Q Consensus 199 ~~~i~~lP~~Lii~l~Rf~~~-~~~~~K~~~~v~fp~~~Ldl~~~~~~~~~~~~~~~~~--------------------- 256 (337)
+..|.++|+||+|||+||.++ .+...|++..|.|| ..|||++|+..+.+......+.
T Consensus 578 ~~~i~~lP~vLiihLkRF~~d~~~~~~Ki~~~V~FP-~~LDl~~y~~~~~q~~E~~lp~~~~~~~~~~~~~~~~~d~~~l 656 (854)
T 3ihp_A 578 TTRFASFPDYLVIQIKKFTFGLDWVPKKLDVSIEMP-EELDISQLRGTGLQPGEEELPDIAPPLVTPDEPKAPMLDESVI 656 (854)
T ss_dssp EEEESSCCSEEEEEECCEEECGGGCEEECCEECCCC-SEEECGGGBCCCSCTTCCBCCCC----------------CHHH
T ss_pred EEEeeeCCceEEEEeehheecCCCceEECCeEEecC-CcEehHHhccCCCCCCceecccccccccccccccccCcCHHHH
Confidence 999999999999999999974 46678999999999 6899999976422110000000
Q ss_pred --------------------------------------------------------------------------------
Q psy1343 257 -------------------------------------------------------------------------------- 256 (337)
Q Consensus 257 -------------------------------------------------------------------------------- 256 (337)
T Consensus 657 ~~L~~mGf~~~~~~kal~~t~n~~~e~a~~wl~~hmdd~di~~p~~~~~~~~~~s~~~~~~~~~~e~i~~l~~mGf~~~~ 736 (854)
T 3ihp_A 657 IQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDDPDFANPLILPGSSGPGSTSAAADPPPEDCVTTIVSMGFSRDQ 736 (854)
T ss_dssp HHHHHHTCCHHHHHHHHHHTTSCCHHHHHHHHHHHTTSCGGGSCCCCC--------------CCHHHHHHHHTTTCCHHH
T ss_pred HHHHhcCCCHHHHHHHHhhcCCCchHHHhHHHhhccCcccccccccccccccccccccccCCCCHHHHHHHHHcCCCHHH
Confidence
Q ss_pred -------------------------------------------------hhhhccCCCcceeEeEEEEeecC-CCCCeEE
Q psy1343 257 -------------------------------------------------DLVKAKYESTMYDLVANIVHDGE-PSNGTYR 286 (337)
Q Consensus 257 -------------------------------------------------~~~~~~~~~~~Y~L~avi~H~G~-~~~GHY~ 286 (337)
...........|+|+|||+|.|. +++||||
T Consensus 737 a~~aL~~t~~~~eraidwlfs~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avi~H~G~~~~~GHY~ 816 (854)
T 3ihp_A 737 ALKALRATNNSLERAVDWIFSHIDDLDAEAAMDISEGRSAADSISESVPVGPKVRDGPGKYQLFAFISHMGTSTMCGHYV 816 (854)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCC------------------CCCCCCCSEEEEEEEEEEESSCSSCCEEE
T ss_pred HHHHHHhhcCcHHHHHHhhhcCcccccccccccccccccccccccccccccCCCCCCCceEEEEEEEEeecCCCCCcCeE
Confidence 00001223458999999999996 6899999
Q ss_pred EEEEeCCCCcEEEecCCcccccCccccccCCcEEEEEEecC
Q psy1343 287 VHLYHKGIGKWYEIQDLHVTDILPQMITLTEAYIQIYELRT 327 (337)
Q Consensus 287 a~vk~~~~~~W~~~nD~~V~~v~~~~v~~~~aYiLfY~r~~ 327 (337)
||||+ +++||+|||+.|+++ +++....||||||+|.+
T Consensus 817 ~~~~~--~~~W~~~nD~~V~~~--~~~~~~~aYilfY~R~~ 853 (854)
T 3ihp_A 817 CHIKK--EGRWVIYNDQKVCAS--EKPPKDLGYIYFYQRVA 853 (854)
T ss_dssp EEEEE--TTEEEEEETTEEEEC--SSCCTTSCSEEEEEECC
T ss_pred EEEEe--CCEEEEEECCeeEEc--cccCCCcceEEEEEecC
Confidence 99999 699999999999997 45678899999999976
No 10
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=100.00 E-value=1.9e-51 Score=400.72 Aligned_cols=267 Identities=20% Similarity=0.253 Sum_probs=225.0
Q ss_pred CCCCChHHHHHhhccccccccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHhccCCCCcCCCCCHHH
Q psy1343 1 ALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPID 80 (337)
Q Consensus 1 ~L~~~~~l~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~i~p~~~~~~l~~~~~~~f~~~~QqDa~E 80 (337)
||+|+|+||++++...... .....++.++|++||..|+.+. .+++|..|+..+. .+.|.++.||||||
T Consensus 193 ~L~~~~~fr~~~~~~~~~~------~~~~~~~~~~l~~lf~~l~~~~---~~~~~~~l~~~~~---~~~~~~~~QqDa~E 260 (522)
T 2f1z_A 193 TLFFTNQLRKAVYMMPTEG------DDSSKSVPLALQRVFYELQHSD---KPVGTKKLTKSFG---WETLDSFMQHDVQE 260 (522)
T ss_dssp HHHTCHHHHHHHHTCCCCS------SCTTTCHHHHHHHHHHHHHHCS---SCBCCTTHHHHTC---CCTTTSSTTSCHHH
T ss_pred HHhccHHHHHHHhhccccC------CcccchHHHHHHHHHHHHhcCC---CccCcHHHHhhcC---CccCCCcccccHHH
Confidence 6899999999987643211 1123468999999999999875 4789999988762 47899999999999
Q ss_pred HHHHHHHHHHHHhccCCCCCCCcceeccCCeEeeeeecCCCcchhHhhhhhccccccCceeeeeecceeeeccCCCCCCc
Q psy1343 81 FLSWFLNTLHRALNGTKKKDSSIVYKTFLGSMKVKTRKIPPVELEEKVRQRLLLTEEYKETETESPFLYLTCDLPPPPLF 160 (337)
Q Consensus 81 fl~~ll~~l~~~~~~~~~~~~~~i~~~F~g~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~s~~~e~f~~lsl~ip~~~~~ 160 (337)
|+.+|||.|++++... ...++|.++|+|++. +.++|..|+..+.+.|+|++|+|+||...
T Consensus 261 fl~~LLd~L~~~l~~~--~~~s~i~~lF~G~~~----------------s~i~C~~C~~~s~~~e~f~~LsL~i~~~~-- 320 (522)
T 2f1z_A 261 LCRVLLDNVENKMKGT--CVEGTIPKLFRGKMV----------------SYIQCKEVDYRSDRREDYYDIQLSIKGKK-- 320 (522)
T ss_dssp HHHHHHHHHHHHHTTS--TTTTHHHHHHCEEEE----------------EEECCSSSCCCCCEEEEESCEEECCTTCC--
T ss_pred HHHHHHHHHHhhccCC--ccccchhhheeEEEE----------------EEEEcCCCCceeeeeeeeEEEEEEeCCcc--
Confidence 9999999999998653 345789999999999 66789999999999999999999998653
Q ss_pred cccccccCCCcccHHHHHhhhcccc---------hhhhcccccceeEEEEeecCCCceEEEEeeeccCC--cccccCCce
Q psy1343 161 KDEVLENIIPQVNLYTILTKFNNES---------EKEYKTYKENFLKRFEITSLPPYLILYVKRFTKNT--FFVEKNPTI 229 (337)
Q Consensus 161 ~~~~~~~~~~~~sl~~~L~~~~~~~---------~~~c~~~~~~~~k~~~i~~lP~~Lii~l~Rf~~~~--~~~~K~~~~ 229 (337)
+|.+||+.|+..+ |..|+ .+.+.|+..|.++|+||+|||+||.++. +...|++..
T Consensus 321 ------------~l~~~L~~~~~~E~l~~~n~~~C~~c~--~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~ 386 (522)
T 2f1z_A 321 ------------NIFESFVDYVAVEQLDGDNKYDAGEHG--LQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDR 386 (522)
T ss_dssp ------------BHHHHHHHHTCEEEECTTSCBCCGGGC--SBCEEEEEEESCCCSEEEEEECCEEECSSSSCEEECCCC
T ss_pred ------------cchHHHHHhhceeecCCcceeecCcCC--ccceEEEEEeecCCceEEEEEEeEEEcccCCcceEcCcE
Confidence 7999999987654 55553 2788999999999999999999999764 456799999
Q ss_pred EeeCCCCCCCCCCCCchhhhhcchhhhhhhhccCCCcceeEeEEEEeecCCCCCeEEEEEEeCCCCcEEEecCCcccccC
Q psy1343 230 VNFPVKNVDFGDILTPEVKAKYESTMYDLVKAKYESTMYDLVANIVHDGEPSNGTYRVHLYHKGIGKWYEIQDLHVTDIL 309 (337)
Q Consensus 230 v~fp~~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avi~H~G~~~~GHY~a~vk~~~~~~W~~~nD~~V~~v~ 309 (337)
|.|| ..|||.+|+..... .....|+|+|||+|.|++++|||+||+|...+++||+|||+.|++++
T Consensus 387 v~fp-~~Ldl~~~~~~~~~--------------~~~~~Y~L~avv~H~G~~~~GHY~a~v~~~~~~~W~~fnD~~V~~v~ 451 (522)
T 2f1z_A 387 FEFP-EQLPLDEFLQKTDP--------------KDPANYILHAVLVHSGDNHGGHYVVYLNPKGDGKWCKFDDDVVSRCT 451 (522)
T ss_dssp CBCC-SEEECGGGBSSCCT--------------TSCCEEEEEEEEEEECSSSCSEEEEEECTTSSSCCEEEETTEEEECC
T ss_pred EeCC-CeecchhhhccccC--------------CCCcEEEEEEEEEecccCCCceEEEEEecCCCCCEEEEECceeEECC
Confidence 9999 58999999875321 14678999999999999999999999997668999999999999999
Q ss_pred cccccc---------------CCcEEEEEEecCC
Q psy1343 310 PQMITL---------------TEAYIQIYELRTT 328 (337)
Q Consensus 310 ~~~v~~---------------~~aYiLfY~r~~~ 328 (337)
.++|.. ..||||||+|++.
T Consensus 452 ~~~v~~~~~Gg~~~~~~~~~~~~aYiLfY~r~~~ 485 (522)
T 2f1z_A 452 KEEAIEHNYGGHDDDLSVRHCTNAYMLVYIRESK 485 (522)
T ss_dssp HHHHSTTSSCCC--------CEEEEEEEEEETTS
T ss_pred HHHHHHhhcCCCccccccCcCCceEEEEEEECCc
Confidence 888763 5799999999874
No 11
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens}
Probab=99.81 E-value=8.8e-21 Score=171.14 Aligned_cols=216 Identities=13% Similarity=0.081 Sum_probs=131.9
Q ss_pred CCCCChHHHHHhhccccccccCCCCCCCchHHHHHH-HHHHHHHhCCCCCCCCCChHHHHHHHHHhccCCCC-----cCC
Q psy1343 1 ALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRF-GELMRKLWNPRNFKSHVSPHEMLQAVVLWSRKQFQ-----FTE 74 (337)
Q Consensus 1 ~L~~~~~l~~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~l~~~l~~~~~~~~~i~p~~~~~~l~~~~~~~f~-----~~~ 74 (337)
||+.+|++++-++........ ......+..+| .+|+..|-. ..+.|..|+..|++. .|+|. ++.
T Consensus 27 ~Lfsipel~d~Ll~~~~~~~~----~~~~~~l~~~L~r~i~~~Lrk-----~~~~P~~~l~~LR~~-~pQfae~~G~~~~ 96 (374)
T 2vhf_A 27 CLFAFSSVLDTVLLRPKEKND----VEYYSETQELLRTEIVNPLRI-----YGYVCATKIMKLRKI-LEKVEAASGFTSE 96 (374)
T ss_dssp HHHSSBGGGHHHHHCCCCTTS----CTTHHHHHHHHHHTTHHHHHH-----TSEECHHHHHHHHHH-HHHHC--------
T ss_pred HHHhchHHHHHHHhCCCCCCc----chhHHHHHHHHHHHHHHHHhh-----cCCCcHHHHHHHHHH-hHHHhcccCCCcc
Confidence 678999999988876432211 11223688888 899999865 479999999999887 46553 389
Q ss_pred CCCHHHHHHHHHHHHHHH-hc-cC-CCC---CCCcceeccCCeEeeeeecCCCcchhHhhhhhccccccCceeeeeecce
Q psy1343 75 QSDPIDFLSWFLNTLHRA-LN-GT-KKK---DSSIVYKTFLGSMKVKTRKIPPVELEEKVRQRLLLTEEYKETETESPFL 148 (337)
Q Consensus 75 QqDa~Efl~~ll~~l~~~-~~-~~-~~~---~~~~i~~~F~g~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~s~~~e~f~ 148 (337)
||||.||+..||..|... +. .. ... ..+.+.++|.
T Consensus 97 QQDaEE~~t~Ll~~L~~~ep~lkl~s~~~~~~~~~~~q~f~--------------------------------------- 137 (374)
T 2vhf_A 97 EKDPEEFLNILFHHILRVEPLLKIRSAGQKVQDCYFYQIFM--------------------------------------- 137 (374)
T ss_dssp CCCHHHHHHHHHTTTTCCCCSEEEEETTCCCEEESCEECCC---------------------------------------
T ss_pred ccCHHHHHHHHHHHHhhcccccccccccccccccHHHHHhc---------------------------------------
Confidence 999999999999998753 20 00 000 0001111111
Q ss_pred eeeccCCCCCCccccccccCCCcccHHHHHhhhcccchhhhcccccceeEEEEeecCCCceEEEEeeeccCCcccccCCc
Q psy1343 149 YLTCDLPPPPLFKDEVLENIIPQVNLYTILTKFNNESEKEYKTYKENFLKRFEITSLPPYLILYVKRFTKNTFFVEKNPT 228 (337)
Q Consensus 149 ~lsl~ip~~~~~~~~~~~~~~~~~sl~~~L~~~~~~~~~~c~~~~~~~~k~~~i~~lP~~Lii~l~Rf~~~~~~~~K~~~ 228 (337)
+-+.... ..+...+++..+ . .... .|.++|+||+||+.|| +...||-.
T Consensus 138 ----E~~e~~~-----------~e~~~qL~e~nf----l------~~gi---kisrLP~yLtVq~vRF----gKkaKIlr 185 (374)
T 2vhf_A 138 ----EKNEKVG-----------VPTIQQLLEWSF----I------NSNL---KFAEAPSCLIIQMPRF----GKDFKLFK 185 (374)
T ss_dssp ----CCC--CC-----------CCBHHHHHHHHH----H------HHTE---EESSCCSEEEEECCCC----SSSSSCCC
T ss_pred ----CcccccC-----------CcHHHHhhhHHH----H------HcCC---eeecCCcceEEeeecc----CccccccC
Confidence 1111100 113333322110 0 1111 1999999999999999 34459999
Q ss_pred eEeeCCCCCCCCCCCCchhhhhc-------------------c--h-----hh--hh--------h--------------
Q psy1343 229 IVNFPVKNVDFGDILTPEVKAKY-------------------E--S-----TM--YD--------L-------------- 258 (337)
Q Consensus 229 ~v~fp~~~Ldl~~~~~~~~~~~~-------------------~--~-----~~--~~--------~-------------- 258 (337)
+|.||+ .||+.++++++.+... . . .. .+ .
T Consensus 186 kV~fp~-eLDvtdl~tdelr~~~vr~kl~e~e~~~~~k~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (374)
T 2vhf_A 186 KIFPSL-ELNITDLLEDTPRQCRICGGLAMYECRECYDDPDISAGKIKQFCKTCNTQVHLHPKRLNHKYNPVSLPKDLPD 264 (374)
T ss_dssp CCBCCS-EECCGGGBSSSCCBCTTTSCBCCEECGGGTTCTTTTTTSCCEECHHHHHHHTTSGGGTTCCCEECCC------
T ss_pred CCCCcc-hhccHhhcCcchhhccHhHHHHHHHHHHHHhhhhccccccccccchhhhhhhhhhhhhcccccccccCccccc
Confidence 999996 7999998876421100 0 0 00 00 0
Q ss_pred ---hhccCCCcceeEeEEEEeecCCCCCeEEEEEEeC-CCCcEEEecC
Q psy1343 259 ---VKAKYESTMYDLVANIVHDGEPSNGTYRVHLYHK-GIGKWYEIQD 302 (337)
Q Consensus 259 ---~~~~~~~~~Y~L~avi~H~G~~~~GHY~a~vk~~-~~~~W~~~nD 302 (337)
.........|+|+|||+ +++|||+||||.. .+++||.||-
T Consensus 265 ~~~~~g~~psg~yeL~aVlt----adsgHYvafVK~~~~d~~W~~FDs 308 (374)
T 2vhf_A 265 WDWRHGCIPCQNMELFAVLC----IETSHYVAFVKYGKDDSAWLFFDS 308 (374)
T ss_dssp ----------CCEEEEEEEE----EETTEEEEEEECSSSTTCEEEEET
T ss_pred cccccCCCCceeEEEEEEEE----ccCCceEEEEEecCCCCCeEEEec
Confidence 01122347899999999 8899999999973 4789999983
No 12
>3mp2_A Non-structural protein 3; papain-like protease, TGEV, hydrolase; 2.50A {Porcine transmissible gastroenteritiscoronavirus}
Probab=75.74 E-value=2.3 Score=35.18 Aligned_cols=33 Identities=24% Similarity=0.425 Sum_probs=26.6
Q ss_pred EEEeecCCCCCeEEEEEEeCCCCcEEEecCCcccccC
Q psy1343 273 NIVHDGEPSNGTYRVHLYHKGIGKWYEIQDLHVTDIL 309 (337)
Q Consensus 273 vi~H~G~~~~GHY~a~vk~~~~~~W~~~nD~~V~~v~ 309 (337)
-++-.|+.++|||+.+... .+ +.+|-..+.+++
T Consensus 163 ~~vF~G~~~~GHY~~~~~~--~~--~~vDG~~~~~~~ 195 (211)
T 3mp2_A 163 HAVYTGTTQNGHYMVDDIE--HG--YCVDGMGIKPLK 195 (211)
T ss_dssp EEEEESCTTTCEEEEEETT--TT--EEEETTEEECCC
T ss_pred EEEEEcCCCCceEEEEecc--cc--eEEeCCceeEcc
Confidence 3444899999999999754 34 899999999887
No 13
>2fe8_A PP1AB, ORF1AB, replicase polyprotein 1AB; protease, hydrolase; 1.85A {Sars coronavirus} PDB: 3e9s_A* 3mj5_A*
Probab=59.48 E-value=6.8 Score=34.55 Aligned_cols=35 Identities=20% Similarity=0.185 Sum_probs=27.3
Q ss_pred EEEeecCCCCCeEEEEEEeCCCCcEEEecCCcccccCc
Q psy1343 273 NIVHDGEPSNGTYRVHLYHKGIGKWYEIQDLHVTDILP 310 (337)
Q Consensus 273 vi~H~G~~~~GHY~a~vk~~~~~~W~~~nD~~V~~v~~ 310 (337)
..+-.|+.++|||+.+... ++. ++||-..+.+++.
T Consensus 262 a~vF~G~~~~GHYt~~~~~--~~~-~~~Dg~~~~~~~~ 296 (315)
T 2fe8_A 262 ANEYTGNYQCGHYTHITAK--ETL-YRIDGAHLTKMSE 296 (315)
T ss_dssp EEEEESCGGGCEEEEEEES--SSE-EEEETTEEEEESE
T ss_pred EEEEECCCCccceEEEecC--Cce-eEEeCCcceeccc
Confidence 3334899899999988864 243 8999999999875
No 14
>3o65_A Putative ataxin-3-like protein; papain-like fold, hydrolase-protein complex; 2.70A {Homo sapiens} PDB: 2aga_A 1yzb_A 2jri_A 2dos_A
Probab=55.84 E-value=17 Score=29.50 Aligned_cols=57 Identities=12% Similarity=0.041 Sum_probs=40.8
Q ss_pred EeEEEEeecCCCCCeEEEEEEeCCCCcEEEecCCcccccCcccc--------ccCCcEEEEEEecCCCCCC
Q psy1343 270 LVANIVHDGEPSNGTYRVHLYHKGIGKWYEIQDLHVTDILPQMI--------TLTEAYIQIYELRTTPSPT 332 (337)
Q Consensus 270 L~avi~H~G~~~~GHY~a~vk~~~~~~W~~~nD~~V~~v~~~~v--------~~~~aYiLfY~r~~~~~~~ 332 (337)
..|+|++.. -|++|..|- +|.||-+|=..-.|.--.+. +....|-+|-.+-+.|...
T Consensus 110 ~~~FI~N~~----~HWfaiRki--gg~WyNLdS~l~~P~~i~~~yL~~fL~ql~~eg~siFvV~g~lP~~~ 174 (191)
T 3o65_A 110 ERSFICNYK----QHWFTIRKF--GKHWFNLNSLLAGPELISDTCLANFLARLQQQAYSVFVVKGDLPDCE 174 (191)
T ss_dssp CCEEEEEES----SCEEEEEEE--TTEEEECCTTSSSCEEECHHHHHHHHGGGGSTTEEEEEEESCCCCCH
T ss_pred hhhhhhccc----cceeeEEec--CCEEEEccCCCCCCCCcChHHHHHHHHHHHHCCCEEEEEcCCCCCCC
Confidence 458888875 599999887 69999999876554432221 1377899998887766543
No 15
>2ww6_A Fibritin, T4 fibritin; D-amino acids, chaperone, viral protein; HET: DPN PG4; 0.98A {Enterobacteria phage T4} PDB: 1rfo_A 1u0p_A 2kbl_A 2ww7_A*
Probab=41.09 E-value=18 Score=19.02 Aligned_cols=15 Identities=13% Similarity=0.503 Sum_probs=11.6
Q ss_pred EEEEeCCCCcEEEecCC
Q psy1343 287 VHLYHKGIGKWYEIQDL 303 (337)
Q Consensus 287 a~vk~~~~~~W~~~nD~ 303 (337)
+|||. +|.|...++.
T Consensus 12 ~Yvr~--dg~WV~l~t~ 26 (27)
T 2ww6_A 12 AYVRK--FGEWVLLSTF 26 (27)
T ss_dssp EEEEE--TTEEEEGGGG
T ss_pred eeEEE--cCeEEEcccc
Confidence 58888 7999987653
No 16
>2oxg_Z SOXZ protein; immunoglobulin-like beta-sandwich fold, transport protein; 1.40A {Paracoccus denitrificans} PDB: 2ox5_Z 2oxh_Z*
Probab=40.07 E-value=73 Score=23.09 Aligned_cols=57 Identities=16% Similarity=0.181 Sum_probs=43.5
Q ss_pred CCcceeEeEEEEee---cCC-C------CCeEEEEEEeCCCCcEEEecCCcccccCccccccCCcEEEEEEecC
Q psy1343 264 ESTMYDLVANIVHD---GEP-S------NGTYRVHLYHKGIGKWYEIQDLHVTDILPQMITLTEAYIQIYELRT 327 (337)
Q Consensus 264 ~~~~Y~L~avi~H~---G~~-~------~GHY~a~vk~~~~~~W~~~nD~~V~~v~~~~v~~~~aYiLfY~r~~ 327 (337)
.....++...|.|- |.. + -.||+..+.- .+||..|..++.....+.++|+=|+-+..
T Consensus 16 ~g~~~~vk~~I~HPMetGl~~d~~g~~IPa~~I~~v~~-------~~ng~~v~~~~~~~~iS~NP~~~F~~~~~ 82 (108)
T 2oxg_Z 16 AGETVTVKALISHKMESGQRKDADGKLIPRSIINRFTC-------ELNGVNVVDVAIDPAVSTNPYFEFDAKVD 82 (108)
T ss_dssp TTEEEEEEEEECCCCBCSCCBCTTSCBCCCBCEEEEEE-------EETTEEEEEEEECTTBCSSCEEEEEEEEC
T ss_pred CCCCEEEEEEeECCCccccccCcCCCccchHheEEEEE-------EECCEEEEEEEeCCccccCCeEEEEEecC
Confidence 34456777788885 322 1 2799988864 37999999999998889999999987754
No 17
>1qmy_A Protease, leader protease; hydrolase, sulfhydryl proteinase, picornaviral proteinase; 1.9A {Aphthovirus O} SCOP: d.3.1.2 PDB: 1qol_A 2jqf_R 2jqg_R
Probab=38.90 E-value=21 Score=27.37 Aligned_cols=28 Identities=18% Similarity=0.251 Sum_probs=23.4
Q ss_pred CCCeEEEEEEeCCCCcEEEecCCcccccCc
Q psy1343 281 SNGTYRVHLYHKGIGKWYEIQDLHVTDILP 310 (337)
Q Consensus 281 ~~GHY~a~vk~~~~~~W~~~nD~~V~~v~~ 310 (337)
+.+|-+-++-. +..||.+||+...+..+
T Consensus 117 g~eHAVFa~~T--S~GWyaiDDe~fypwtP 144 (167)
T 1qmy_A 117 GQEHAVFACVT--SNGWYAIDDEDFYPWTP 144 (167)
T ss_dssp TTTEEEEEECC--TTSSEEEETTEEEECCC
T ss_pred CCCceEEEEEc--cCceEEecccccccCCC
Confidence 56899877765 57799999999999875
No 18
>1v8h_A Sulfur oxidation protein SOXZ; lithotrophic sulfur oxidation, unknown function, structural genomics; 1.20A {Thermus thermophilus HB8} SCOP: b.1.18.19
Probab=35.14 E-value=58 Score=23.58 Aligned_cols=56 Identities=14% Similarity=0.073 Sum_probs=41.9
Q ss_pred CcceeEeEEEEeecCC----------CCCeEEEEEEeCCCCcEEEecCCcccccCccccccCCcEEEEEEecC
Q psy1343 265 STMYDLVANIVHDGEP----------SNGTYRVHLYHKGIGKWYEIQDLHVTDILPQMITLTEAYIQIYELRT 327 (337)
Q Consensus 265 ~~~Y~L~avi~H~G~~----------~~GHY~a~vk~~~~~~W~~~nD~~V~~v~~~~v~~~~aYiLfY~r~~ 327 (337)
....++...|.|-=.. --.||+..+.- .+||..|..++.....+.++|+=|+-+..
T Consensus 16 g~~~~vk~~I~HPmetGl~~D~~g~~iPa~~I~~v~~-------~~ng~~v~~~~~~~~iS~nP~~~F~~~~~ 81 (107)
T 1v8h_A 16 GEEFRLQVVAQHPNEPGTRRDAEGKLIPAKYINLVEV-------YFEGEKVAEARPGPSTSANPLYAFKFKAE 81 (107)
T ss_dssp TCEEEEEEEECCCCBCSCCBCTTSCBCCCBCEEEEEE-------EETTEEEEEECCCSSCCSSCEEEEEEECC
T ss_pred CCcEEEEEEeECCCCccccccccCCcCchHheEEEEE-------EECCEEEEEEEeCCccccCCeEEEEEecC
Confidence 3455666678774211 12799988864 38999999999999999999999987754
No 19
>4ekf_A Adenain; alpha and beta protein (A+B), hydrolase; HET: CSD; 0.98A {Human adenovirus 2} PDB: 1nln_A 1avp_A
Probab=28.75 E-value=65 Score=25.92 Aligned_cols=31 Identities=10% Similarity=0.151 Sum_probs=23.2
Q ss_pred EEEEeecC--CCCCeEEEEEEeCCCCcEEEecC
Q psy1343 272 ANIVHDGE--PSNGTYRVHLYHKGIGKWYEIQD 302 (337)
Q Consensus 272 avi~H~G~--~~~GHY~a~vk~~~~~~W~~~nD 302 (337)
.-|+-.|+ .++=|++|+..++...+.|.||=
T Consensus 40 ~AIVNTg~retGGvHWiA~Aw~P~s~~~YmFDP 72 (204)
T 4ekf_A 40 CAIVNTAGRETGGVHWMAFAWNPRSKTCYLFEP 72 (204)
T ss_dssp EEEEESCC----CCCEEEEEEETTTTEEEEECT
T ss_pred eeEEecCCcccCceeEEEeEecCCcceEEEeCC
Confidence 44555565 36679999999998889999984
No 20
>3aqy_A Beta-1,3-glucan-binding protein; beta-sandwich, immune receptor, sugar bindi protein; 1.58A {Plodia interpunctella} PDB: 3aqz_A* 3aqx_A* 2rqe_A
Probab=27.12 E-value=56 Score=23.64 Aligned_cols=38 Identities=13% Similarity=0.212 Sum_probs=26.8
Q ss_pred eeEeEE---EEeecC-CCCCeEEEEEEeCCCCcEEEecCCcc
Q psy1343 268 YDLVAN---IVHDGE-PSNGTYRVHLYHKGIGKWYEIQDLHV 305 (337)
Q Consensus 268 Y~L~av---i~H~G~-~~~GHY~a~vk~~~~~~W~~~nD~~V 305 (337)
++|+|+ |+..-. ...|+|...+-...+|+|+.-|+..+
T Consensus 27 i~lfafh~~iN~~~~~~~~g~~~~dit~~~~GrW~~~d~~~~ 68 (106)
T 3aqy_A 27 FSLFAFHGKLNEEMDGLEAGHWARDITKPKEGRWTFRDRNVK 68 (106)
T ss_dssp CSEEEEEEEESSCCCSSCCCSEEEEECCCBTTEEEEEECSCC
T ss_pred cEEEEEEEEecCCCCccccceeeeeeeEecCCEEEEECCceE
Confidence 445554 333332 46799999999988999998887643
No 21
>1r75_A Hypothetical protein; structural genomics, unknown function, PSI, protein structur initiative; 1.86A {Leishmania major} SCOP: b.134.1.1
Probab=23.75 E-value=45 Score=25.50 Aligned_cols=16 Identities=19% Similarity=0.177 Sum_probs=13.0
Q ss_pred CCCcEEEecCCccccc
Q psy1343 293 GIGKWYEIQDLHVTDI 308 (337)
Q Consensus 293 ~~~~W~~~nD~~V~~v 308 (337)
.+++|+.|||+..-.+
T Consensus 49 ~~~~WaFYNDT~~yeM 64 (141)
T 1r75_A 49 EARRWAFYNDSKELII 64 (141)
T ss_dssp TTTEEEEEECCSSEEE
T ss_pred CCCEEEEEeCCceEEE
Confidence 4799999999986655
No 22
>2kha_A Beta-1,3-glucan-binding protein; glycoprotein, immune response, innate immunity, secreted, sugar binding protein; NMR {Plodia interpunctella}
Probab=21.84 E-value=84 Score=23.66 Aligned_cols=25 Identities=12% Similarity=0.202 Sum_probs=21.3
Q ss_pred CCCCeEEEEEEeCCCCcEEEecCCc
Q psy1343 280 PSNGTYRVHLYHKGIGKWYEIQDLH 304 (337)
Q Consensus 280 ~~~GHY~a~vk~~~~~~W~~~nD~~ 304 (337)
...|+|...+-...+|+|+.-|+..
T Consensus 52 ~~~G~~~~dit~~~~GrW~~~d~~~ 76 (130)
T 2kha_A 52 LEAGHWARDITKPKEGRWTFRDRNA 76 (130)
T ss_dssp CCCCSEEEEECSCSSSEEEEEETTC
T ss_pred cccceeeeeeeeecCCEEEEECCce
Confidence 4679999999998999999888653
Done!