RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1343
(337 letters)
>gnl|CDD|239134 cd02669, Peptidase_C19M, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 440
Score = 414 bits (1066), Expect = e-144
Identities = 165/325 (50%), Positives = 218/325 (67%), Gaps = 22/325 (6%)
Query: 1 ALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEMLQ 60
AL HV P+R++FL NY +K LV+R EL+RK+WNPRNFK HVSPHE+LQ
Sbjct: 137 ALSHVKPIRNFFLLYENYENIKDRKS----ELVKRLSELIRKIWNPRNFKGHVSPHELLQ 192
Query: 61 AVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDSSIVYKTFLGSMKVKTRKIP 120
AV S+K+F TEQSDP++FLSW LNTLH+ L G+KK +SSI++ F G ++++T+KI
Sbjct: 193 AVSKVSKKKFSITEQSDPVEFLSWLLNTLHKDLGGSKKPNSSIIHDCFQGKVQIETQKIK 252
Query: 121 PVELEEKVRQRLLLTEEYKETETESPFLYLTCDLPPPPLFKDEVLENIIPQVNLYTILTK 180
P EE + + + + SPFL LT DLPPPPLFKD ENIIPQV L +L K
Sbjct: 253 PHAEEEGSKD-KFFKDSRVKKTSVSPFLLLTLDLPPPPLFKDGNEENIIPQVPLKQLLKK 311
Query: 181 FNNESEKEYKTYKENFLKRFEITSLPPYLILYVKRFTKNTFFVEKNPTIVNFPVKNVDFG 240
++ ++E E K LKR+ I+ LP YLI ++KRF+KN FF EKNPTIVNFP+KN+D
Sbjct: 312 YDGKTETELKDS----LKRYLISRLPKYLIFHIKRFSKNNFFKEKNPTIVNFPIKNLDLS 367
Query: 241 DILTPEVKAKYESTMYDLVKAKYESTMYDLVANIVHDGEPS-NGTYRVHLYHKGIGKWYE 299
D + + + ST Y+LVANIVH+G P +GT+RV L HK KW+E
Sbjct: 368 DYVHFD------------KPSLNLSTKYNLVANIVHEGTPQEDGTWRVQLRHKSTNKWFE 415
Query: 300 IQDLHVTDILPQMITLTEAYIQIYE 324
IQDL+V ++LPQ+I L+E+YIQI+E
Sbjct: 416 IQDLNVKEVLPQLIFLSESYIQIWE 440
>gnl|CDD|215922 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase.
Length = 313
Score = 139 bits (351), Expect = 1e-38
Identities = 86/332 (25%), Positives = 135/332 (40%), Gaps = 48/332 (14%)
Query: 1 ALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEMLQ 60
AL + PLRDY L+ + + L + +L L +P + + VSP LQ
Sbjct: 21 ALFSIPPLRDYLLQNSSELINPLGSLNQ---LPRALADLFHALQSPNSKNASVSPKNFLQ 77
Query: 61 AVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKK------DSSIVYKTFLGSMKV 114
A+ QF Q D +FL + L+ LH LN KK+ + S++ K F G ++
Sbjct: 78 ALG-KISPQFSGYMQQDAHEFLLFLLDQLHEDLNSLKKRKSHAAENESLITKLFQGQLE- 135
Query: 115 KTRKIPPVELEEKVRQRLLLTEEYKETETESPFLYLTCDLPPPPLFKDEVLENIIPQVNL 174
RL + KE+ T PF L+ +D + N
Sbjct: 136 ---------------SRLKCLKCKKESSTPEPFSDLS------LPIEDSSSVLKLLTGNF 174
Query: 175 YTILTKFNNESEKEYKTY-KENFLKRFEITSLPPYLILYVKRFTK-NTFFVEKNPTIVNF 232
+ E K K+N +K+ +I+ LPP LI+++KRF N +K V F
Sbjct: 175 LKLEELEKEEKYYCPKCGGKQNAIKKLDISRLPPVLIIHLKRFEDFNRETEKKISDRVEF 234
Query: 233 PVKNVDFGDILTPEVKAKYESTMYDLVKAKYESTMYDLVANIVHDG-EPSNGTYRVHLYH 291
P +D L E++ + T Y+LV A +VH G S G Y ++
Sbjct: 235 P-LELDLSSYLEEELEGEEPPTKYELV------------AVVVHSGSSLSGGHYIAYIKK 281
Query: 292 KGIGKWYEIQDLHVTDILPQMITLTEAYIQIY 323
+ KW + D V+ + + + + AYI Y
Sbjct: 282 REKNKWVKFDDEKVSVVTEEEVLRSSAYILFY 313
>gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl
hydrolases. They are intracellular peptidases that
remove ubiquitin molecules from polyubiquinated peptides
by cleavage of isopeptide bonds. They hydrolyse bonds
involving the carboxyl group of the C-terminal Gly
residue of ubiquitin The purpose of the
de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 255
Score = 135 bits (341), Expect = 7e-38
Identities = 75/273 (27%), Positives = 114/273 (41%), Gaps = 56/273 (20%)
Query: 72 FTEQSDPIDFLSWFLNTLHRALNGTKKKDS------SIVYKTFLGSMKVKTRKIPPVELE 125
F+EQ D +FL + L+ LH L + K+ S S+++ F G ++ +
Sbjct: 19 FSEQQDAHEFLLFLLDKLHEELKKSSKRTSDSSSLKSLIHDLFGGKLESTIVCL------ 72
Query: 126 EKVRQRLLLTEEYKETETESPFLYLTCDLPPPPLFKDEVLENIIPQVNLYTILTKFNNES 185
E E+ + P L+L+ LP +PQV+L L KF E
Sbjct: 73 ----------ECGHESVSTEPELFLSLPLPVKG----------LPQVSLEDCLEKFFKEE 112
Query: 186 EKEY-------KTYKENFLKRFEITSLPPYLILYVKRFTKN-TFFVEKNPTIVNFPVKNV 237
E K K+ KR +I LPP LI+++KRF+ N EK T V+FP++
Sbjct: 113 ILEGDNCYKCEKKKKQEATKRLKIKKLPPVLIIHLKRFSFNEDGTKEKLNTKVSFPLELD 172
Query: 238 DFGDILTPEVKAKYESTMYDLVKAKYESTMYDLVANIVHDGE-PSNGTYRVHLYHKGIGK 296
Y S + S Y+LVA +VH G +G Y ++ GK
Sbjct: 173 LS----------PYLSEGEKDSDSDNGSYKYELVAVVVHSGTSADSGHYVAYVKDPSDGK 222
Query: 297 WYEIQDLHVTDILPQMITL-----TEAYIQIYE 324
WY+ D VT++ + + + AYI YE
Sbjct: 223 WYKFNDDKVTEVSEEEVLEFGSLSSSAYILFYE 255
>gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 230
Score = 85.4 bits (212), Expect = 2e-19
Identities = 66/260 (25%), Positives = 100/260 (38%), Gaps = 49/260 (18%)
Query: 69 QFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDSSIVYKTFLGSMKVKTRKIPPVELEEKV 128
Q +Q D +FL + L+ LH SI+ F G +K
Sbjct: 16 QCLSADQQDAQEFLLFLLDGLH-----------SIIVDLFQGQLK--------------- 49
Query: 129 RQRLLLTEEYKETETESPFLYLTCDLPPPPLFKDEV-LENIIPQVNLYT---ILTKFNNE 184
RL K + T PF YL+ +P +V LE+ + L+T L N
Sbjct: 50 -SRLTCLTCGKTSTTFEPFTYLSLPIPSGSGDAPKVTLEDCL---RLFTKEETLDGDNAW 105
Query: 185 SEKEYKTYKENFLKRFEITSLPPYLILYVKRFTKNTFFVEKNPTIVNFPVKNVDFGDILT 244
+ K K K+ I+ LP LI+++KRF+ + K T V FP+ ++D
Sbjct: 106 KCPKCKK-KRKATKKLTISRLPKVLIIHLKRFSFSRGSTRKLTTPVTFPLNDLDL----- 159
Query: 245 PEVKAKYESTMYDLVKAKYESTMYDLVANIVHDGEPSNGTYRVHLYHKGIGKWYEIQDLH 304
T Y ++ YDL A + H G + G Y + + WY+ D
Sbjct: 160 ---------TPYVDTRSFTGPFKYDLYAVVNHYGSLNGGHYTAYCKNNETNDWYKFDDSR 210
Query: 305 VTDILPQMITLTEAYIQIYE 324
VT + + + AYI YE
Sbjct: 211 VTKVSESSVVSSSAYILFYE 230
>gnl|CDD|239125 cd02660, Peptidase_C19D, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 328
Score = 62.8 bits (153), Expect = 4e-11
Identities = 74/340 (21%), Positives = 124/340 (36%), Gaps = 47/340 (13%)
Query: 1 ALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEMLQ 60
AL H LR+YFL + + +S M +++ + SP+ +
Sbjct: 18 ALLHNPLLRNYFLSDRHSCTCLSCSPNSCL------SCAMDEIFQEFYYSGDRSPYGPIN 71
Query: 61 AVVLW--SRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDSS------IVYKTFLGSM 112
+ L + Q D +F + L+ LH G K + + I+++TF GS
Sbjct: 72 LLYLSWKHSRNLAGYSQQDAHEFFQFLLDQLHTHYGGDKNEANDESHCNCIIHQTFSGS- 130
Query: 113 KVKTRKIPPVELEEKVRQRLLLTEEYKETETESPFLYLTCDLPPPPLFKDEVLENIIP-Q 171
L+ V + T PFL L+ D+P + E+ +
Sbjct: 131 -----------LQSSV----TCQRCGGVSTTVDPFLDLSLDIPNKSTPSWALGESGVSGT 175
Query: 172 VNLYTILTKFNNESEKEYKTYK-------ENFLKRFEITSLPPYLILYVKRFTKNTFFV- 223
L L +F + YK + K+ I LPP L +KRF +
Sbjct: 176 PTLSDCLDRFTRPEKLGDFAYKCSGCGSTQEATKQLSIKKLPPVLCFQLKRFEHSLNKTS 235
Query: 224 EKNPTIVNFPVKNVDFGDILTPEVKAKYESTMYDLVKAKYESTMYDLVANIVHDGEPSNG 283
K T V FP+ ++ TP + T + YDL A +VH G G
Sbjct: 236 RKIDTYVQFPL----ELNM-TPYTSSSIGDTQ--DSNSLDPDYTYDLFAVVVHKGTLDTG 288
Query: 284 TYRVHLYHKGIGKWYEIQDLHVTDILPQMITLTEAYIQIY 323
Y + G+W++ D +T + + + ++AY+ Y
Sbjct: 289 HYTAYCRQGD-GQWFKFDDAMITRVSEEEVLKSQAYLLFY 327
>gnl|CDD|239126 cd02661, Peptidase_C19E, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 304
Score = 60.4 bits (147), Expect = 2e-10
Identities = 72/337 (21%), Positives = 124/337 (36%), Gaps = 66/337 (19%)
Query: 1 ALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEMLQ 60
L H PL +Y L +++ G ++ + R L + + L+
Sbjct: 19 CLTHTPPLANYLLSR-EHSKDCCNEGFCMMCALEAH--VERALASSGPGSAPRIFSSNLK 75
Query: 61 AVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRA-LNGTKK--------KDSSIVYKTFLGS 111
+ K F+ Q D +FL + L+ + +A L+ KK +++++V + F G
Sbjct: 76 QI----SKHFRIGRQEDAHEFLRYLLDAMQKACLDRFKKLKAVDPSSQETTLVQQIFGGY 131
Query: 112 MKVKTRKIPPVELEEKVRQRLLLTEEYKETETESPFLYLTCDLPPPPLFKDEVLENIIPQ 171
+ R ++ + T PFL L+ D+ + LE+ + Q
Sbjct: 132 L----------------RSQVKCLNCKHVSNTYDPFLDLSLDIK-----GADSLEDALEQ 170
Query: 172 VNLYTILT---KFNNESEKEYKTYKENFLKRFEITSLPPYLILYVKRFTKNTFFVEKNPT 228
L K+ E K+ K+ I P L +++KRF+ K
Sbjct: 171 FTKPEQLDGENKYKCERCKKKVKAS----KQLTIHRAPNVLTIHLKRFSNFRG--GK--- 221
Query: 229 IVNFPVKNVDFGDILTPEVKAKYESTMYDLVKAKYESTMYDLVANIVHDG-EPSNGTYRV 287
K + F + L + Y M Y L A +VH G P +G Y
Sbjct: 222 ----INKQISFPETL---DLSPY---MSQ---PNDGPLKYKLYAVLVHSGFSPHSGHY-- 266
Query: 288 HLYHKGI-GKWYEIQDLHVTDILPQMITLTEAYIQIY 323
+ Y K GKWY + D V+ + + + +AYI Y
Sbjct: 267 YCYVKSSNGKWYNMDDSKVSPVSIETVLSQKAYILFY 303
>gnl|CDD|227847 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Posttranslational
modification, protein turnover, chaperones].
Length = 823
Score = 59.5 bits (144), Expect = 1e-09
Identities = 49/224 (21%), Positives = 91/224 (40%), Gaps = 32/224 (14%)
Query: 114 VKTRKIPPVELEEKVRQ--RLLLTEEYKETETESPFLYLTCDLPPPPLFKDEVLENIIPQ 171
+ T++ VE E ++ ++++ E++E S F Y PL+ +
Sbjct: 622 IDTKREEQVEEEGQMNFNDAVVISCEWEEKRYLSLFSY-------DPLWTIREIGAAERT 674
Query: 172 VNLYTILTKFN-----NESEKEY-KTYKEN--FLKRFEITSLPPYLILYVKRFTKNTFFV 223
+ L L +F+ S+ Y KE K+ E+ LP LI+++KRF+ F
Sbjct: 675 ITLQDCLNEFSKPEQLGLSDSWYCPGCKEFRQASKQMELWRLPMILIIHLKRFSSVRSFR 734
Query: 224 EKNPTIVNFPVKNVDFGDILTPEVKAKYESTMYDLVKAKYESTMYDLVANIVHDGEPSNG 283
+K +V +P+ ++D + + +YDL A H G S G
Sbjct: 735 DKIDDLVEYPIDDLDLSGVEYMVDDPR---------------LIYDLYAVDNHYGGLSGG 779
Query: 284 TYRVHLYHKGIGKWYEIQDLHVTDILPQMITLTEAYIQIYELRT 327
Y + + WY D +T++ P+ + AY+ Y ++
Sbjct: 780 HYTAYARNFANNGWYLFDDSRITEVDPEDSVTSSAYVLFYRRKS 823
Score = 40.3 bits (94), Expect = 0.001
Identities = 42/182 (23%), Positives = 69/182 (37%), Gaps = 26/182 (14%)
Query: 2 LCHVTPLRDYFL-----REINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPH 56
L H LRDYFL IN G + + +L+++L++ H
Sbjct: 284 LMHTWELRDYFLSDEYEESINEENPLGMHGS----VASAYADLIKQLYDGNL---HAFTP 336
Query: 57 EMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDSSIVYKTFLGSMKVKT 116
+ + ++F +Q D +F+++ L+ LH LN KK + G V
Sbjct: 337 SGFKKTIGSFNEEFSGYDQQDSQEFIAFLLDGLHEDLNRIIKKPYTSKPDLSPGDDVVVK 396
Query: 117 RKIPPVELEEKVRQRLLLTE----EYKETETES----------PFLYLTCDLPPPPLFKD 162
+K E R ++T+ YK T T PF+ LT LP ++K
Sbjct: 397 KKAKECWWEHLKRNDSIITDLFQGMYKSTLTCPGCGSVSITFDPFMDLTLPLPVSMVWKH 456
Query: 163 EV 164
+
Sbjct: 457 TI 458
>gnl|CDD|239122 cd02657, Peptidase_C19A, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyse bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 305
Score = 50.4 bits (121), Expect = 4e-07
Identities = 86/351 (24%), Positives = 123/351 (35%), Gaps = 89/351 (25%)
Query: 1 ALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEMLQ 60
L V LRD NY +R SS L +L + + V P E LQ
Sbjct: 17 CLRSVPELRDALK---NYNPARRGANQSSDNLTNALRDLFDTM---DKKQEPVPPIEFLQ 70
Query: 61 AVVLWSRKQF-QFTE--------QSDPIDFLSWFLNTLHRALNGTKKKDSSIVYKTFLGS 111
+ R F QF E Q D + S L+ L + L G K S I + F
Sbjct: 71 LL----RMAFPQFAEKQNQGGYAQQDAEECWSQLLSVLSQKLPGAGSKGSFID-QLFGIE 125
Query: 112 MKVKTRKIPPVELEEKVRQRLLLTEEYKETETESPFLYLTCDLPPPPLFKDEVLENIIPQ 171
++ K E + + +E TES L C + +I +
Sbjct: 126 LETKM-----KCTE---------SPDEEEVSTES-EYKLQCHI------------SITTE 158
Query: 172 VNLYT--ILTKFNNESEKEYKTYKEN--FLKRFEITSLPPYLILYVKRFTKNTFFVE--- 224
VN + E EK T + + K I+ LP YL + RF F+
Sbjct: 159 VNYLQDGLKKGLEEEIEKHSPTLGRDAIYTKTSRISRLPKYLTVQFVRF----FWKRDIQ 214
Query: 225 KNPTI---VNFPVKNVDFGDILTPEVKAKYESTMYDLVKAKYESTMYDLVANIVHDGEPS 281
K I V FP +D ++ TP S Y+LVA I H G +
Sbjct: 215 KKAKILRKVKFPF-ELDLYELCTP-------------------SGYYELVAVITHQGRSA 254
Query: 282 N-GTYRVHLYHKGIGKWYEIQDLHVTDILPQMITLTE-------AYIQIYE 324
+ G Y + K GKW + D V+++ + I AYI +Y+
Sbjct: 255 DSGHYVAWVRRKNDGKWIKFDDDKVSEVTEEDILKLSGGGDWHIAYILLYK 305
>gnl|CDD|239132 cd02667, Peptidase_C19K, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 279
Score = 47.4 bits (113), Expect = 4e-06
Identities = 41/195 (21%), Positives = 70/195 (35%), Gaps = 41/195 (21%)
Query: 160 FKDEVLENIIPQVNLYTILTKFNNESEKEYKTYKENFL--------KRFEITSLPPYLIL 211
F D L + +I + +E E F K++ I+ LPP L++
Sbjct: 96 FLDLSLPRSDEIKSECSIESCLKQFTEVEILEGNNKFACENCTKAKKQYLISKLPPVLVI 155
Query: 212 YVKRFTKNTFF-VEKNPTIVNFPVKNVDFGDILTPEVKAKYESTMYDLVKAKYESTMYDL 270
++KRF + + K V+FP + +D P+ S +Y L
Sbjct: 156 HLKRFQQPRSANLRKVSRHVSFP-EILDLAPFCDPKCN----------SSEDKSSVLYRL 204
Query: 271 VANIVHDGEPSNGTYRVHLY---------------------HKGIGKWYEIQDLHVTDIL 309
+ H G +G Y ++ G G+WY I D V ++
Sbjct: 205 YGVVEHSGTMRSGHYVAYVKVRPPQQRLSDLTKSKPAADEAGPGSGQWYYISDSDVREVS 264
Query: 310 PQMITLTEAYIQIYE 324
+ + +EAY+ YE
Sbjct: 265 LEEVLKSEAYLLFYE 279
>gnl|CDD|239124 cd02659, peptidase_C19C, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 334
Score = 47.3 bits (113), Expect = 5e-06
Identities = 33/113 (29%), Positives = 49/113 (43%), Gaps = 11/113 (9%)
Query: 198 KRFEITSLPPYLILYVKRFTKNTFFVEKNPTIVN----FPVKNVDFGDILTPEVKAKYES 253
K LPP L L +KRF + F +N FP++ +D + P +
Sbjct: 185 KGVCFKKLPPVLTLQLKRFEFD--FETMMRIKINDRFEFPLE-LD----MEPYTEKGLAK 237
Query: 254 TMYDLVKAKYESTMYDLVANIVHDGEPSNGTYRVHLYHKGIGKWYEIQDLHVT 306
D K ES +Y+L +VH G+ G Y ++ + GKWY+ D VT
Sbjct: 238 KEGDSEKKDSESYIYELHGVLVHSGDAHGGHYYSYIKDRDDGKWYKFNDDVVT 290
>gnl|CDD|227820 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Posttranslational
modification, protein turnover, chaperones].
Length = 415
Score = 41.9 bits (98), Expect = 3e-04
Identities = 70/341 (20%), Positives = 111/341 (32%), Gaps = 51/341 (14%)
Query: 8 LRDYFLREINYARVKRPPGDSSF----LLVQRFGELMRKLWNPRNFKSHVSPHEMLQAVV 63
++L+ IN + PG ++F L + G K +PRNF ++L
Sbjct: 101 QGRFYLQNINTDFPRGKPGSNAFKQFIALYETPGCHGPKSISPRNFI------DILSGRN 154
Query: 64 LWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDSSIVYKTFLGSM--KVKTRKIPP 121
K F Q D +FL +FL+ LH LNG K + + K + ++
Sbjct: 155 ----KLFSGDMQQDSQEFLIFFLDLLHEDLNGNKSRSPILELKDEFEEVREELPLSHFSH 210
Query: 122 VELEEKVRQRLLLTEEYKETETESPFLYLTCDLPPPPLFKDEVLENIIP---QVNLYTIL 178
E +R L + + +S C+ + L Q+ L +
Sbjct: 211 HEWNLHLRSNKSLVAKTFFGQDKSRLQCEACNYTSTTIAMFSTLLVPPYEVVQLGLQECI 270
Query: 179 TKFNNESEKEYKT--------YKENFLKRFEITSLPPYLILYVKRFTKNTFFVEKNPTIV 230
+F E + E K KE+ KR EI LP LI+++ RF + +K T
Sbjct: 271 DRFYEEEKLEGKDAWRCPKCGRKESSRKRMEILVLPDVLIIHISRFHISVMGRKKIDTPQ 330
Query: 231 ----NFPVKNVDFGDILTPEVKAKYESTMYDLVKAKYESTMYDLVANIVHDGEPSNGTYR 286
V+ Y Y L+ + H+G + G Y
Sbjct: 331 GWKNTASVEVNVTLLFNN---------------GIGYIPRKYSLLGVVCHNGTLNGGHYF 375
Query: 287 VHLYHKGIGKWYEIQDLHVTDI--LPQMITLTEAYIQIYEL 325
+ G W D V +YI Y
Sbjct: 376 SEVKRS--GTWNVYDDSQVRKGSRTTSGSH-PSSYILFYTR 413
>gnl|CDD|239133 cd02668, Peptidase_C19L, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 324
Score = 41.6 bits (98), Expect = 4e-04
Identities = 29/119 (24%), Positives = 52/119 (43%), Gaps = 19/119 (15%)
Query: 193 KENFLKRFEITSLPPYLILYVKRFT--KNTFFVEKNPTIVNFPVKNVDFGDILTPEVKAK 250
K + +R +T+LPP L + RF + T +K ++FP + +D G+ L +
Sbjct: 185 KTDATRRIRLTTLPPTLNFQLLRFVFDRKTGAKKKLNASISFP-EILDMGEYLAESDEGS 243
Query: 251 YESTMYDLVKAKYESTMYDLVANIVHDG-EPSNGTYRVHLYHKGIGKWYEIQDLHVTDI 308
Y Y+L ++H G +G Y H+ + G+WY+ D V ++
Sbjct: 244 YV---------------YELSGVLIHQGVSAYSGHYIAHIKDEQTGEWYKFNDEDVEEM 287
>gnl|CDD|239123 cd02658, Peptidase_C19B, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 311
Score = 38.8 bits (91), Expect = 0.003
Identities = 62/303 (20%), Positives = 101/303 (33%), Gaps = 57/303 (18%)
Query: 31 LLVQRFGELMRKLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLH 90
LL R+ + ++ + P M +A++ +F Q D ++FL ++ L
Sbjct: 57 LLSGRYSKPASLKSENDPYQVGIKP-SMFKALIGKGHPEFSTMRQQDALEFLLHLIDKLD 115
Query: 91 RALNGTKKKDSSIVYKTFLGSMKVKTRKIPPVELEEKVRQRLLLTEEYKETETESPFLYL 150
R + + ++K + R L ++ K T S L L
Sbjct: 116 RESFKNLGLNPNDLFKFMIED-----------------RLECLSCKKVKYTSELSEILSL 158
Query: 151 TCDLPPPPLFKDEVLENIIPQVNLYTILTKFNNESEKEYK----TYKENFLKRFEITSLP 206
+P + E E + V L L + E K K + P
Sbjct: 159 --PVPKDEATEKEEGELVYEPVPLEDCLKAYFAPETIEDFCSTCKEKTTATKTTGFKTFP 216
Query: 207 PYLILYVKRFTKNTFFVEKNPTIVNFPVKNVDFGDILTPEVKAKYESTMYDLVKAKYEST 266
YL++ +KRF P ++ P+ +L KYE
Sbjct: 217 DYLVINMKRF---QLLENWVPKKLDVPI------------------DVPEELGPGKYE-- 253
Query: 267 MYDLVANIVHDG-EPSNGTYRVHLYHK--GIGKWYEIQDLHV--TDILPQMITLTEAYIQ 321
L+A I H G +G Y H+ + G GKW D V + P+M L YI
Sbjct: 254 ---LIAFISHKGTSVHSGHYVAHIKKEIDGEGKWVLFNDEKVVASQDPPEMKKL--GYIY 308
Query: 322 IYE 324
Y+
Sbjct: 309 FYQ 311
>gnl|CDD|227409 COG5077, COG5077, Ubiquitin carboxyl-terminal hydrolase
[Posttranslational modification, protein turnover,
chaperones].
Length = 1089
Score = 36.4 bits (84), Expect = 0.020
Identities = 30/107 (28%), Positives = 42/107 (39%), Gaps = 18/107 (16%)
Query: 204 SLPPYLILYVKRFTKNTFFVEKNPTIVN----FPVKNVDFGDILTPEVKAKYESTMYDLV 259
SLPP L L +KRF F +N FP++ +D L + S
Sbjct: 377 SLPPVLHLQLKRF--EYDFERDMMVKINDRYEFPLE-IDLLPFLDRDADKSENS------ 427
Query: 260 KAKYESTMYDLVANIVHDGEPSNGTYRVHLYHKGIGKWYEIQDLHVT 306
+Y L +VH G+ G Y L + G+WY+ D VT
Sbjct: 428 -----DAVYVLYGVLVHSGDLHEGHYYALLKPEKDGRWYKFDDTRVT 469
>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes
Rab11a, Rab11b, and Rab25. Rab11a, Rab11b, and Rab25
are closely related, evolutionary conserved Rab proteins
that are differentially expressed. Rab11a is
ubiquitously synthesized, Rab11b is enriched in brain
and heart and Rab25 is only found in epithelia. Rab11/25
proteins seem to regulate recycling pathways from
endosomes to the plasma membrane and to the trans-Golgi
network. Furthermore, Rab11a is thought to function in
the histamine-induced fusion of tubulovesicles
containing H+, K+ ATPase with the plasma membrane in
gastric parietal cells and in insulin-stimulated
insertion of GLUT4 in the plasma membrane of
cardiomyocytes. Overexpression of Rab25 has recently
been observed in ovarian cancer and breast cancer, and
has been correlated with worsened outcomes in both
diseases. In addition, Rab25 overexpression has also
been observed in prostate cancer, transitional cell
carcinoma of the bladder, and invasive breast tumor
cells. GTPase activating proteins (GAPs) interact with
GTP-bound Rab and accelerate the hydrolysis of GTP to
GDP. Guanine nucleotide exchange factors (GEFs) interact
with GDP-bound Rabs to promote the formation of the
GTP-bound state. Rabs are further regulated by guanine
nucleotide dissociation inhibitors (GDIs), which
facilitate Rab recycling by masking C-terminal lipid
binding and promoting cytosolic localization. Most Rab
GTPases contain a lipid modification site at the
C-terminus, with sequence motifs CC, CXC, or CCX. Lipid
binding is essential for membrane attachment, a key
feature of most Rab proteins. Due to the presence of
truncated sequences in this CD, the lipid modification
site is not available for annotation.
Length = 165
Score = 32.9 bits (76), Expect = 0.095
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 4/36 (11%)
Query: 215 RFTKNTFFVEKNPTI-VNFPVKNVDFGDILTPEVKA 249
RFT+N F ++ TI V F + + +KA
Sbjct: 22 RFTRNEFNLDSKSTIGVEFATRTIQIDGKT---IKA 54
>gnl|CDD|239131 cd02666, Peptidase_C19J, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 343
Score = 33.6 bits (77), Expect = 0.11
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
Query: 246 EVKAKYESTMYDLVKAKYESTMYDLVANIVHDGEPSNGTYRVHLYHKGIGKWYEIQDLHV 305
E+K + E D +S Y L A +H GE S+G Y V++ W + D V
Sbjct: 264 ELKHEIEKQFDD-----LKSYGYRLHAVFIHRGEASSGHYWVYIKDFEENVWRKYNDETV 318
Query: 306 T 306
T
Sbjct: 319 T 319
>gnl|CDD|239128 cd02663, Peptidase_C19G, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 300
Score = 33.4 bits (77), Expect = 0.13
Identities = 61/311 (19%), Positives = 103/311 (33%), Gaps = 93/311 (29%)
Query: 53 VSPHEMLQAVVLWSRKQ---FQFTEQSDPIDFLSWFLNTL---------------HRALN 94
+SP + + + +++ F D +FL++ LN + N
Sbjct: 44 ISPKKFITRL----KRENELFDNYMHQDAHEFLNFLLNEIAEILDAERKAEKANRKLNNN 99
Query: 95 GTKKKDSSIVYKTFLGSMKVKTRKIPPVELEEKVRQRLLLTEEYKETETESPFLYLTCDL 154
+ + V++ F G + +TR + E V R + FL L+ D+
Sbjct: 100 NNAEPQPTWVHEIFQGILTNETRCLTC----ETVSSR------------DETFLDLSIDV 143
Query: 155 PPPPLFKDEVLENIIPQVNLYTILTKFNNESE--KEYKTY------KENFLKRFEITSLP 206
++ + L +F+ K Y + KR +I LP
Sbjct: 144 EQ--------------NTSITSCLRQFSATETLCGRNKFYCDECCSLQEAEKRMKIKKLP 189
Query: 207 PYLILYVKRFTKNTFFVEKNPTI---VNFPVKNVDFGDILTPEVKAKYESTMYDLVKAKY 263
L L++KRF K + + + V FP L + +T D A+
Sbjct: 190 KILALHLKRF-KYDEQLNRYIKLFYRVVFP---------LELRLF----NTTDD---AEN 232
Query: 264 ESTMYDLVANIVHDGEPSNGTYRVHLYH--KGIGKWYEIQDLHVTDILPQMIT------- 314
+Y+LVA +VH G G H K G W D V I +
Sbjct: 233 PDRLYELVAVVVHIG---GGPNHGHYVSIVKSHGGWLLFDDETVEKIDENAVEEFFGDSP 289
Query: 315 -LTEAYIQIYE 324
AY+ Y+
Sbjct: 290 NQATAYVLFYQ 300
>gnl|CDD|222118 pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydrolase.
Length = 296
Score = 32.4 bits (74), Expect = 0.26
Identities = 36/175 (20%), Positives = 55/175 (31%), Gaps = 39/175 (22%)
Query: 139 KETETESPFLYLTCDLPPPPLFKD------EVLENIIPQVNLYTILTKFNNESEKEYKTY 192
E+ E P L T +LP PP+ K +LE + + I N K
Sbjct: 139 NESVKEEPLL--TLELPYPPIDKPQGRTFSNILERSLNRE---KINRITCNSCRK----- 188
Query: 193 KENFLKRFEITSLPPYLILYVKRFTKNTFFVEKNPTIVNFPV---KNVDFGDILTPEVKA 249
R + SLPP L + +KR+ N T VD +
Sbjct: 189 YSLANSRKHVKSLPPILGICLKRY---------NVTPNGNWSRLNTFVDIPLEIRLPHFI 239
Query: 250 KYESTMYDLVKAKYESTMYDLVANIVHDGEPSNGTYRVHL------YHKGIGKWY 298
+ + + Y+L + H G + T+ HL +WY
Sbjct: 240 QDDEM--VNEGPLSGNFKYELQGVVCHIG---DSTHSGHLVSFIRVAPSEDDQWY 289
>gnl|CDD|213963 TIGR04350, C_S_lyase_PatB, putative C-S lyase. Members of this
subfamily are probable C-S lyases from a family of
pyridoxal phosphate-dependent enzymes that tend to be
(mis)annotated as probable aminotransferases. One member
is PatB of Bacillus subtilis, a proven C-S-lyase.
Another is the virulence factor cystalysin from
Treponema denticola, whose hemolysin activity may stem
from H2S production. Members of the seed alignment occur
next to examples of the enzyme 5-histidylcysteine
sulfoxide synthase, from ovothiol A biosynthesis, and
would be expected to perform a C-S cleavage of
5-histidylcysteine sulfoxide to leave
1-methyl-4-mercaptohistidine (ovothiol A).
Length = 384
Score = 32.3 bits (74), Expect = 0.32
Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 9/82 (10%)
Query: 55 PHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLH---RALNGTKKKDSSI----VYKT 107
P + AV+ W ++ + + I FL + +L RAL T + I VY
Sbjct: 62 PDSLYAAVINWLAQRHGWQIDPEWIVFLPGVVPSLFAAVRAL--TAPGEGVIVQTPVYPP 119
Query: 108 FLGSMKVKTRKIPPVELEEKVR 129
FL ++K R++ L+
Sbjct: 120 FLSAVKSNGRELVLNPLKLDPG 141
>gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine
triphosphatases (GTPases). The Ras family of the Ras
superfamily includes classical N-Ras, H-Ras, and K-Ras,
as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG,
Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins.
Ras proteins regulate cell growth, proliferation and
differentiation. Ras is activated by guanine nucleotide
exchange factors (GEFs) that release GDP and allow GTP
binding. Many RasGEFs have been identified. These are
sequestered in the cytosol until activation by growth
factors triggers recruitment to the plasma membrane or
Golgi, where the GEF colocalizes with Ras. Active
GTP-bound Ras interacts with several effector proteins:
among the best characterized are the Raf kinases,
phosphatidylinositol 3-kinase (PI3K), RalGEFs and
NORE/MST1. Most Ras proteins contain a lipid
modification site at the C-terminus, with a typical
sequence motif CaaX, where a = an aliphatic amino acid
and X = any amino acid. Lipid binding is essential for
membrane attachment, a key feature of most Ras proteins.
Due to the presence of truncated sequences in this CD,
the lipid modification site is not available for
annotation.
Length = 160
Score = 30.6 bits (70), Expect = 0.60
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 213 VKRFTKNTFFVEKNPTIVNFPVKNVDFGD 241
RF F E +PTI + K +
Sbjct: 16 TIRFVSGEFVEEYDPTIEDSYRKQIVVDG 44
>gnl|CDD|227663 COG5369, COG5369, Uncharacterized conserved protein [Function
unknown].
Length = 743
Score = 31.5 bits (71), Expect = 0.66
Identities = 14/81 (17%), Positives = 27/81 (33%), Gaps = 9/81 (11%)
Query: 74 EQSDPIDFLSWFLNTLHRALNGTKKKDSSIVYKTFLGSMKVKTRKIPPVELEEKVRQRLL 133
E+++P++ L + A + L S+ E+ ++ R
Sbjct: 575 EENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIF---------EILDEFAGRTP 625
Query: 134 LTEEYKETETESPFLYLTCDL 154
L+ KE P Y +L
Sbjct: 626 LSPGSKEEHVLLPISYTIVNL 646
>gnl|CDD|218717 pfam05724, TPMT, Thiopurine S-methyltransferase (TPMT). This
family consists of thiopurine S-methyltransferase
proteins from both eukaryotes and prokaryotes.
Thiopurine S-methyltransferase (TPMT) is a cytosolic
enzyme that catalyzes S-methylation of aromatic and
heterocyclic sulfhydryl compounds, including anticancer
and immunosuppressive thiopurines.
Length = 203
Score = 30.9 bits (70), Expect = 0.76
Identities = 15/73 (20%), Positives = 26/73 (35%), Gaps = 9/73 (12%)
Query: 243 LTPEVKAKYESTMYDLVKAKYE----STMYDLVANIVHDGEPSNGTYRVHLYHKGIGKWY 298
L PE++ +Y MY+L+ + Y H+G P + G +
Sbjct: 114 LPPEMRPRYAKQMYELLPPGGRGLLITLDYPQTD---HEGPPFSVP--AAELEALFGGGW 168
Query: 299 EIQDLHVTDILPQ 311
++ L D L
Sbjct: 169 KVARLEREDALEP 181
>gnl|CDD|199904 cd10316, RGL4_M, Middle domain of rhamnogalacturonan lyase, a
family 4 polysaccharide lyase. The rhamnogalacturonan
lyase of the polysaccharide lyase family 4 (RGL4) is
involved in the degradation of RG (rhamnogalacturonan)
type-I, an important pectic plant cell wall
polysaccharide, by cleaving the alpha-1,4 glycoside bond
between L-rhamnose and D-galacturonic acids in the
backbone of RG type-I through a beta-elimination
reaction. RGL4 consists of three domains, an N-terminal
catalytic domain, a middle domain with a FNIII type fold
and a C-terminal domain with a jelly roll fold. Both the
middle domain represented by this model and the
C-terminal domain are putative carbohydrate binding
modules. There are two types of RG lyases, which both
cleave the alpha-1,4 bonds of the RG-I main chain (RG
chain) through the beta-elimination reaction, but belong
to two structurally unrelated polysaccharide lyase (PL)
families, 4 and 11.
Length = 92
Score = 29.1 bits (66), Expect = 0.81
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 283 GTYRVHLYHKGIGKWYEIQDLHVT 306
GTYR+ Y GI + + VT
Sbjct: 59 GTYRLTAYADGIFGYVAQDTVTVT 82
>gnl|CDD|239130 cd02665, Peptidase_C19I, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 228
Score = 30.2 bits (68), Expect = 1.1
Identities = 19/83 (22%), Positives = 38/83 (45%), Gaps = 6/83 (7%)
Query: 224 EKNPTIVNFPVKNVDFGDILTPEVKAKYESTMYDLVKAKYESTMYDLVANIVHDGEPSNG 283
+ P ++ F + +F ++ K E + + YE L A +VH+G+ + G
Sbjct: 126 TELPPVLTFELSRFEFNQGRPEKIHDKLEFPQ-IIQQVPYE-----LHAVLVHEGQANAG 179
Query: 284 TYRVHLYHKGIGKWYEIQDLHVT 306
Y ++Y + +W + D+ VT
Sbjct: 180 HYWAYIYKQSRQEWEKYNDISVT 202
>gnl|CDD|239127 cd02662, Peptidase_C19F, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 240
Score = 29.6 bits (67), Expect = 1.9
Identities = 35/172 (20%), Positives = 54/172 (31%), Gaps = 57/172 (33%)
Query: 177 ILTKFNNESEKEYKTYKENFLKRFEITSLPPYLILYVKRFT---KNTFFVEKNPTIVNFP 233
+ + E +YK + + I LP L +++ R + T KN
Sbjct: 102 LDDFLSTEIIDDYKCDR----CQTVIVRLPQILCIHLSRSVFDGRGTST--KNSC----- 150
Query: 234 VKNVDFGDILTPEVKAKYESTMYDLVKAKYESTMYDLVANIVHDGEPSNGTY----RVHL 289
V F + L K +Y L A +VH G S+G Y R L
Sbjct: 151 --KVSFPERLP-----------------KV---LYRLRAVVVHYGSHSSGHYVCYRRKPL 188
Query: 290 YHKGI----------------GKWYEIQDLHVTDILPQMITLT-EAYIQIYE 324
+ K W+ I D V ++ + AY+ YE
Sbjct: 189 FSKDKEPGSFVRMREGPSSTSHPWWRISDTTVKEVSESEVLEQKSAYMLFYE 240
>gnl|CDD|218140 pfam04547, Anoctamin, Calcium-activated chloride channel. The
family carries eight putative transmembrane domains,
and, although it has no similarity to other known
channel proteins, it is clearly a calcium-activated
ionic channel. It is expressed in various secretory
epithelia, the retina and sensory neurons, and mediates
receptor-activated chloride currents in diverse
physiological processes.
Length = 449
Score = 29.1 bits (66), Expect = 3.7
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 164 VLENIIPQVNLYTILTKFNNESEKEYKTYKENFLKRFEI-TSLPPY 208
+ E ++P + K + EKE K + L+R E + LPPY
Sbjct: 261 ITEVVLPYLKKKIRKKKIKKKKEKEKKPEENEILERIENESELPPY 306
>gnl|CDD|182105 PRK09840, PRK09840, catecholate siderophore receptor Fiu;
Provisional.
Length = 761
Score = 29.0 bits (65), Expect = 3.9
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 16 INYARVKRPPGDSSFLLVQ 34
INYA ++PPG S+F L Q
Sbjct: 532 INYAVSQQPPGGSNFALAQ 550
>gnl|CDD|198352 cd07774, FGGY_1, uncharacterized subgroup; belongs to the FGGY
family of carbohydrate kinases. This subfamily is
composed of uncharacterized carbohydrate kinases. They
are sequence homologous to bacterial glycerol kinase and
have been classified as members of the FGGY family of
carbohydrate kinases. The monomers of FGGY proteins
contain two large domains, which are separated by a deep
cleft that forms the active site. This model includes
both the N-terminal domain, which adopts a ribonuclease
H-like fold, and the structurally related C-terminal
domain.
Length = 430
Score = 28.9 bits (65), Expect = 4.6
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Query: 174 LYTILTKFNNESEKEYKTYKENF--LKRFEITSLPPYLILYVKRFTKNTFFVEKNP 227
LY + ++ +E+E + ++ L +EIT LPP I + K + E P
Sbjct: 88 LYPAIAWYDRRTEEEAEELRKQDPGLAIYEITGLPPDPIYSL---FKILWLREHRP 140
>gnl|CDD|227532 COG5207, UBP14, Isopeptidase T [Posttranslational modification,
protein turnover, chaperones].
Length = 749
Score = 28.9 bits (64), Expect = 5.3
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 202 ITSLPPYLILYVKRFTKNTFFVEK--NPTIVN 231
I SLP YLIL V R++ + VEK +P +
Sbjct: 495 IKSLPKYLILQVGRYSLQNYKVEKLSDPIEMR 526
>gnl|CDD|232927 TIGR00338, serB, phosphoserine phosphatase SerB. Phosphoserine
phosphatase catalyzes the reaction 3-phospho-serine +
H2O = L-serine + phosphate. It catalyzes the last of
three steps in the biosynthesis of serine from
D-3-phosphoglycerate. Note that this enzyme acts on free
phosphoserine, not on phosphoserine residues of
phosphoproteins [Amino acid biosynthesis, Serine
family].
Length = 219
Score = 27.7 bits (62), Expect = 7.3
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 113 KVKTRKIPPVELEEKVRQRLLLTEEYKET 141
+V K PVEL ++VR+ L LTE +E
Sbjct: 65 RVALLKGLPVELLKEVRENLPLTEGAEEL 93
>gnl|CDD|237566 PRK13935, PRK13935, stationary phase survival protein SurE;
Provisional.
Length = 253
Score = 27.8 bits (62), Expect = 7.3
Identities = 20/97 (20%), Positives = 40/97 (41%), Gaps = 24/97 (24%)
Query: 195 NFLKRFEITSLPPYLILYVKRFTKNTFFVEKNPTIVNFPVKNVDFGDI----LTPEVKAK 250
NFL+ F+ + LPP+ T +N V +V +G+I LT + + +
Sbjct: 145 NFLEEFDFSLLPPF-------------------TALNINVPSVPYGEIKGWKLTRQSRRR 185
Query: 251 YESTMYDLVKAKYESTMYDLVANIVHDGEPSNGTYRV 287
Y ++ + + Y ++ I+ D + Y+
Sbjct: 186 YND-YFEERVDPFGNKYYWMMGEIIEDDPDDDVDYKA 221
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.137 0.408
Gapped
Lambda K H
0.267 0.0677 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,587,787
Number of extensions: 1697068
Number of successful extensions: 1569
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1531
Number of HSP's successfully gapped: 47
Length of query: 337
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 240
Effective length of database: 6,635,264
Effective search space: 1592463360
Effective search space used: 1592463360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.6 bits)