RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1343
(337 letters)
>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase
8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 348
Score = 124 bits (311), Expect = 2e-33
Identities = 69/336 (20%), Positives = 128/336 (38%), Gaps = 34/336 (10%)
Query: 1 ALCHVTPLRDYFLREINYARVKR-PPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEML 59
LC+ L DYF R + R + + FG +M+ LW + ++SP +
Sbjct: 33 CLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQ--YRYISPKDF- 89
Query: 60 QAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKK-----------DSSIVYKTF 108
+ + QF Q D + L + ++ LH LN + D +
Sbjct: 90 KITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHA 149
Query: 109 LGSMKVKTRKIPPVELEEKVRQRLLLTEEYKETETESPFLYLTCDLPPPPLFKDEVLENI 168
K I + + + + +K++ T F+YL+ L + +
Sbjct: 150 WQKHKQLNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRL 209
Query: 169 IPQVNLYTILTKFNNESEKEYKTYKENFLKRFEITSLPPYLILYVKRFTKNTFFVEKNPT 228
+ T +F + + + LK+ EI LPP L++++KRF+ + + +K T
Sbjct: 210 FSKEEKLTDNNRFYCSHCRARR----DSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQT 265
Query: 229 IVNFPVKNVDFGDILTPEVKAKYESTMYDLVKAKYESTMYDLVANIVHDGEPSNGTYRVH 288
V+FP++N+D ++ K Y+L + H G G Y +
Sbjct: 266 SVDFPLENLDL---------------SQYVIGPKNNLKKYNLFSVSNHYGGLDGGHYTAY 310
Query: 289 LYHKGIGKWYEIQDLHVTDILPQMITLTEAYIQIYE 324
+ +W++ D V+DI + + AYI Y
Sbjct: 311 CKNAARQRWFKFDDHEVSDISVSSVKSSAAYILFYT 346
>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase
2, USP2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 336
Score = 123 bits (309), Expect = 3e-33
Identities = 75/334 (22%), Positives = 131/334 (39%), Gaps = 28/334 (8%)
Query: 1 ALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEMLQ 60
L + LRDY L+ + Y R ++ LV+ F +L++ +W VSP E
Sbjct: 21 CLSNTRELRDYCLQRL-YMRDLHHGSNAHTALVEEFAKLIQTIWTSSP-NDVVSPSEFKT 78
Query: 61 AVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDSSIVYKTFLGSMKVKTRKIP 120
+ ++ +F Q D +FL + L+ LH +N + S K R++
Sbjct: 79 QIQRYA-PRFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDEKGRQMW 137
Query: 121 PVELEEKVRQ-RLLLTEEYKETETESPFLYLTCDLPPPPLFKDEVLENIIPQVNLYTILT 179
LE + + L + K + T + Y + P + + P+V L +
Sbjct: 138 RKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLSLPIAKRGYPEVTLMDCMR 197
Query: 180 KFNNES--EKEYKTYKENFLK------RFEITSLPPYLILYVKRFTKNTFFVEKNPTIVN 231
F E + + K +F I P L+L++KRF+++ K T VN
Sbjct: 198 LFTKEDVLDGDEKPTCCRCRGRKRCIKKFSIQRFPKILVLHLKRFSESRIRTSKLTTFVN 257
Query: 232 FPVKNVDFGDILTPEVKAKYESTMYDLVKAKYESTMYDLVANIVHDGEPSNGTYRVHLYH 291
FP++++D + + +Y+L A H G G Y +
Sbjct: 258 FPLRDLDLREFASENTN----------------HAVYNLYAVSNHSGTTMGGHYTAYCRS 301
Query: 292 KGIGKWYEIQDLHVTDILPQMITLTEAYIQIYEL 325
G G+W+ D VT + + ++AY+ YEL
Sbjct: 302 PGTGEWHTFNDSSVTPMSSSQVRTSDAYLLFYEL 335
>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase
14 {Human (Homo sapiens) [TaxId: 9606]}
Length = 383
Score = 82.9 bits (203), Expect = 3e-18
Identities = 49/373 (13%), Positives = 97/373 (26%), Gaps = 58/373 (15%)
Query: 1 ALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEMLQ 60
+ V L+D R R + ++ +L + S + P +LQ
Sbjct: 22 CIRSVPELKDALKRYAGALRASGEMASAQYITAA-LRDLFDSMDKTS---SSIPPIILLQ 77
Query: 61 AVVLWS-----RKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDSSIVYK-TFLGSMKV 114
+ + + + Q D + + L + L + + +
Sbjct: 78 FLHMAFPQFAEKGEQGQYLQQDANECWIQMMRVLQQKLEAIEDDSVKETDSSSASAATPS 137
Query: 115 KTRKIPPVELEEKVRQRLLLTEEYKETETESPFLYLTCDLPPPPLFKDEVLENIIPQVNL 174
K + + + + TE +E T+ L K +
Sbjct: 138 KKKSLIDQFFGVEFETTMKCTESEEEEVTKGKENQLQLSCFINQEVKYL--FTGLKLRLQ 195
Query: 175 YTILTKFNNESEKEYKTYKENFLKRFEITSLPPYLILYVKRFTKNTFFVEKNPTIVNFP- 233
I + + ++ + + + K V FP
Sbjct: 196 EEITKQSPTLQRNALYIKSSKISRLPAYLTIQ----MVRFFYKEKESVNAKVLKDVKFPL 251
Query: 234 --------------------------------VKNVDFGDILTPEVKAKYESTMYDLVKA 261
+ +P+ + KYE +
Sbjct: 252 MLDMYELCTPELQEKMVSFRSKFKDLEDKKVNQQPNTSDKKSSPQKEVKYEPFSFADDIG 311
Query: 262 KYESTMYDLVANIVHDGE-PSNGTYRVHLYHKGIGKWYEIQDLHVTDILPQMITLTE--- 317
YDL A + H G S+G Y + K +W + D V+ + P+ I
Sbjct: 312 SNNCGYYDLQAVLTHQGRSSSSGHYVSWVKRKQ-DEWIKFDDDKVSIVTPEDILRLSGGG 370
Query: 318 ----AYIQIYELR 326
AY+ +Y R
Sbjct: 371 DWHIAYVLLYGPR 383
>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 397
Score = 62.1 bits (149), Expect = 2e-11
Identities = 56/373 (15%), Positives = 102/373 (27%), Gaps = 52/373 (13%)
Query: 1 ALCHVTPLRDYFLREINYARVKRPPG---DSSFLLVQRFGELMRKLWNPRNFKSHVSPHE 57
AL V LRD L V + +V L N V P
Sbjct: 24 ALYRVNDLRDMILNYNPSQGVSNSGAQDEEIHKQIVIEMKRCFENLQNKS--FKSVLPVV 81
Query: 58 MLQAV------VLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDSSIVYKT---- 107
+L + Q F +Q D + + +++ +D I +KT
Sbjct: 82 LLNTLRKCYPQFAERDSQGGFYKQQDAEELFTQLFHSMSIVFGDKFSEDFRIQFKTTIKD 141
Query: 108 ----------------FLGSMKVKTRKIPPVELEEKVRQRLLLTEEYKETETESPFLYLT 151
L T L E + +++ + +
Sbjct: 142 TANDNDITVKENESDSKLQCHISGTTNFMRNGLLEGLNEKIEKRSDLTGANSIYSVEKKI 201
Query: 152 CDLPPPPLFKDEVLENIIPQVNLYTILTKF-----------NNESEKEYKTYKENFLKRF 200
LP + IL K K + L++
Sbjct: 202 SRLPKFLTVQYVRFFWKRSTNKKSKILRKVVFPFQLDVADMLTPEYAAEKVKVRDELRKV 261
Query: 201 EITSLPPYLILYVKRFTKNTFFVEKNPTIVNFPVKNVDFGDILTPEVKAKYESTMYDLVK 260
E + ++F ++ P + + ++ + +L K
Sbjct: 262 EKEKNEKEREIKRRKFDPSSSENVMTPR-EQYETQVALNESEKDQWLEEYKKHFPPNLEK 320
Query: 261 AKYESTMYDLVANIVHDGEPSN-GTYRVHLYHKGI-GKWYEIQDLHVTDILPQMI----- 313
+ S +Y+L+ I H G S G Y+ + + KWY+ D V+ + + I
Sbjct: 321 GENPSCVYNLIGVITHQGANSESGHYQAFIRDELDENKWYKFNDDKVSVVEKEKIESLAG 380
Query: 314 --TLTEAYIQIYE 324
A I +Y+
Sbjct: 381 GGESDSALILMYK 393
>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7,
HAUSP) {Human (Homo sapiens) [TaxId: 9606]}
Length = 347
Score = 58.6 bits (140), Expect = 3e-10
Identities = 50/333 (15%), Positives = 96/333 (28%), Gaps = 50/333 (15%)
Query: 1 ALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEMLQ 60
L LR + DSS + + +L + V ++ +
Sbjct: 24 TLFFTNQLRKAVYM------MPTEGDDSSKSVPLALQRVFYELQHS---DKPVGTKKLTK 74
Query: 61 AVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDSSIVYKTFLGSMKVKTRKIP 120
+ + + Q D + L+ + + GT + + K F G M +
Sbjct: 75 S---FGWETLDSFMQHDVQELCRVLLDNVENKMKGTCVEG--TIPKLFRGKMVSYIQCK- 128
Query: 121 PVELEEKVRQRLLLTEEYKETETESPFLYLTCDLPPPPLFKDEVLENIIPQVNLYTILTK 180
E ++ + + + + ++ + + L
Sbjct: 129 ---------------EVDYRSDRREDYYDIQLSIKGKKNIFESFVDYVAVE-----QLDG 168
Query: 181 FNNESEKEYKTYKENFLKRFEITSLPPYLILYVKRFTKNTFFVEKNPTIVNFPVKNVDFG 240
N E+ + K + +LPP L L + RF + + +F
Sbjct: 169 DNKYDAGEHG--LQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNI-----KINDRFEFP 221
Query: 241 DILTPEVKAKYESTMYDLVKAKYESTMYDLVANIVHDGEPSNGTYRVHLYHKGIGKWYEI 300
+ L + + Y L A +VH G+ G Y V+L KG GKW +
Sbjct: 222 EQLPLDEFLQKTDPKD--------PANYILHAVLVHSGDNHGGHYVVYLNPKGDGKWCKF 273
Query: 301 QDLHVTDILPQMITLTEAYIQIYELRTTPSPTA 333
D V+ + +L A
Sbjct: 274 DDDVVSRCTKEEAIEHNYGGHDDDLSVRHCTNA 306
>d1g2qa_ c.61.1.1 (A:) Adenine PRTase {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 178
Score = 27.8 bits (61), Expect = 1.5
Identities = 12/76 (15%), Positives = 22/76 (28%), Gaps = 4/76 (5%)
Query: 228 TIVNFPVKNVDFGDILT----PEVKAKYESTMYDLVKAKYESTMYDLVANIVHDGEPSNG 283
NFP + + F D L P + K ++ + D + + G
Sbjct: 16 QYPNFPSEGILFEDFLPIFRNPGLFQKLIDAFKLHLEEAFPEVKIDYIVGLESRGFLFGP 75
Query: 284 TYRVHLYHKGIGKWYE 299
T + L +
Sbjct: 76 TLALALGVGFVPVRKA 91
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId:
9606]}
Length = 185
Score = 26.9 bits (58), Expect = 2.7
Identities = 6/29 (20%), Positives = 12/29 (41%)
Query: 213 VKRFTKNTFFVEKNPTIVNFPVKNVDFGD 241
+ + + F E PT+ + +V G
Sbjct: 26 LMSYANDAFPEEYVPTVFDHYAVSVTVGG 54
>d2c4ja1 a.45.1.1 (A:86-218) Class mu GST {Human (Homo sapiens)
[TaxId: 9606]}
Length = 133
Score = 26.1 bits (57), Expect = 4.2
Identities = 13/67 (19%), Positives = 27/67 (40%), Gaps = 6/67 (8%)
Query: 186 EKEYKTYKENFLKRFEITSLPPYLILYVKRFTKNTFFVEKNPTIVNFPV-KNVDFGDILT 244
+ +++ K +L+ LP L LY + K +F+ T V+F ++ +
Sbjct: 32 DPDFEKLKPEYLQA-----LPEMLKLYSQFLGKQPWFLGDKITFVDFIAYDVLERNQVFE 86
Query: 245 PEVKAKY 251
P +
Sbjct: 87 PSCLDAF 93
>d1qnra_ c.1.8.3 (A:) Beta-mannanase {Trichoderma reesei [TaxId:
51453]}
Length = 344
Score = 26.9 bits (58), Expect = 4.4
Identities = 16/125 (12%), Positives = 34/125 (27%), Gaps = 8/125 (6%)
Query: 145 SPFLYLTCDLPPPPLFKDEVLENI------IPQVNLYTILTKFNN-ESEKEYKTYKENF- 196
+ + L+ + Q NL I+ NN Y F
Sbjct: 69 QIWFQKLSATGSTINTGADGLQTLDYVVQSAEQHNLKLIIPFVNNWSDYGGINAYVNAFG 128
Query: 197 LKRFEITSLPPYLILYVKRFTKNTFFVEKNPTIVNFPVKNVDFGDILTPEVKAKYESTMY 256
+ Y K + I + + N + + +V ++ +++
Sbjct: 129 GNATTWYTNTAAQTQYRKYVQAVVSRYANSTAIFAWELGNEPRCNGCSTDVIVQWATSVS 188
Query: 257 DLVKA 261
VK+
Sbjct: 189 QYVKS 193
>d1r6ta1 a.16.1.3 (A:7-60) N-terminal domain of eukaryotic
tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 54
Score = 24.3 bits (53), Expect = 5.2
Identities = 6/28 (21%), Positives = 11/28 (39%)
Query: 113 KVKTRKIPPVELEEKVRQRLLLTEEYKE 140
+K E++ V+ + L YK
Sbjct: 19 SLKAGNASKDEIDSAVKMLVSLKMSYKA 46
>d1f7ua3 d.67.2.1 (A:2-135) Arginyl-tRNA synthetase (ArgRS),
N-terminal 'additional' domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 134
Score = 25.6 bits (56), Expect = 5.4
Identities = 8/57 (14%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Query: 113 KVKTRKIPPVELEEKVRQRLLLTEEYKETETESPFLYLTCDLPPPPLFKDEVLENII 169
+++ + P +L + ++ + ++ E PF+ + P V+ +I+
Sbjct: 74 RLRIKGANPKDLAVQWAEKFPCGDFLEKVEANGPFIQFFFN---PQFLAKLVIPDIL 127
>d1s1fa_ a.104.1.1 (A:) Cyp158a2 {Streptomyces coelicolor [TaxId:
1902]}
Length = 399
Score = 26.3 bits (56), Expect = 5.7
Identities = 9/40 (22%), Positives = 17/40 (42%)
Query: 19 ARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEM 58
R+ P G+ LV R ++ +PR + V ++
Sbjct: 33 TRISLPNGEGWAWLVTRHDDVRLVTNDPRFGREAVMDRQV 72
>d1up7a2 d.162.1.2 (A:163-415) 6-phospho-beta-glucosidase
{Thermotoga maritima [TaxId: 2336]}
Length = 253
Score = 26.0 bits (57), Expect = 6.3
Identities = 19/97 (19%), Positives = 36/97 (37%), Gaps = 9/97 (9%)
Query: 243 LTPEVKAKYESTMYDLVKAKYESTMYDLVANIVHDGEPSNGTYRVHLYHKGIGKWY---E 299
+T +V + + ++ + + YD V IV N R +L K + K E
Sbjct: 44 VTEKVFENLKLKLSNIPDEDFPTWFYDSVRLIV------NPYLRYYLMEKKMFKKISTHE 97
Query: 300 IQDLHVTDILPQMITLTEAYIQIYELRTTPSPTAMSE 336
++ V I ++ ++I E T + S
Sbjct: 98 LRAREVMKIEKELFEKYRTAVEIPEELTKRGGSMYST 134
>d1cfza_ c.56.1.1 (A:) Hydrogenase maturating endopeptidase HybD
{Escherichia coli [TaxId: 562]}
Length = 162
Score = 25.6 bits (56), Expect = 6.5
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 228 TIVNFPVKNVDFGDILTPEVKA 249
T+V ++++ LTP V+A
Sbjct: 115 TLVGVIPESLEPHIGLTPTVEA 136
>d1duga1 a.45.1.1 (A:81-220) Class alpha GST {Schistosoma japonicum
[TaxId: 6182]}
Length = 140
Score = 25.3 bits (55), Expect = 7.4
Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Query: 186 EKEYKTYKENFLKRFEITSLPPYLILYVKRFTKNTFFVEKNPTIVNF 232
K+++T K +FL + LP L ++ R T+ + T +F
Sbjct: 31 SKDFETLKVDFLSK-----LPEMLKMFEDRLCHKTYLNGDHVTHPDF 72
>d2a3la1 c.1.9.1 (A:212-839) AMP deaminase (AMPD), catalytic domain
{Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 628
Score = 26.1 bits (57), Expect = 8.0
Identities = 11/63 (17%), Positives = 23/63 (36%), Gaps = 3/63 (4%)
Query: 118 KIPPVELEE---KVRQRLLLTEEYKETETESPFLYLTCDLPPPPLFKDEVLENIIPQVNL 174
++P + E +++ L L + Y ET +P+ P P E + +
Sbjct: 27 EVPTSDEVEAYKCLQECLELRKRYVFQETVAPWEKEVISDPSTPKPNTEPFAHYPQGKSD 86
Query: 175 YTI 177
+
Sbjct: 87 HCF 89
>d1r9da_ c.7.1.1 (A:) Glycerol dehydratase DhaB1 {Clostridium
butyricum [TaxId: 1492]}
Length = 786
Score = 26.0 bits (57), Expect = 8.3
Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 15/58 (25%)
Query: 118 KIPPVELEEKVRQRLLLTEEYKETETESPFLYLTCDLPPPPLFKDEVLENIIPQVNLY 175
P VE E + +L+TE +K+TE + P L + L++I+ + +
Sbjct: 22 AKPCVESE----RAILITESFKQTEGQ-----------PAILRRALALKHILENIPIT 64
>d1gwia_ a.104.1.1 (A:) Cyp154c1 monooxygenase {Streptomyces
coelicolor [TaxId: 1902]}
Length = 403
Score = 25.9 bits (55), Expect = 8.6
Identities = 10/71 (14%), Positives = 16/71 (22%)
Query: 23 RPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFL 82
PG V E L +PR K + + + +
Sbjct: 29 ELPGGVPVWAVTHHAEAKALLTDPRLVKDINVWGAWRRGEIPADWPLIGLANPGRSMLTV 88
Query: 83 SWFLNTLHRAL 93
+ R L
Sbjct: 89 DGAEHRRLRTL 99
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 25.4 bits (54), Expect = 9.0
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 213 VKRFTKNTFFVEKNPTIVNFPVKNVDFGD 241
+ +T N F E PT+ + V G
Sbjct: 20 LISYTTNKFPSEYVPTVFDNYAVTVMIGG 48
>d1iqva_ a.75.1.1 (A:) Ribosomal protein S7 {Archaeon Pyrococcus
horikoshii [TaxId: 53953]}
Length = 201
Score = 25.2 bits (55), Expect = 10.0
Identities = 11/50 (22%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 90 HRALNGTKKKDSSIVYKTFLGSMKVKTRKIPPVELEEKVRQRLLLTEEYK 139
HR+LN K + +V + F ++ +T K P+++ + E+
Sbjct: 76 HRSLNSKKVRAYEVVKEAFKI-IEKRTGK-NPIQVLVWAIENAAPREDTT 123
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.137 0.408
Gapped
Lambda K H
0.267 0.0426 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,297,909
Number of extensions: 62328
Number of successful extensions: 209
Number of sequences better than 10.0: 1
Number of HSP's gapped: 200
Number of HSP's successfully gapped: 24
Length of query: 337
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 251
Effective length of database: 1,226,816
Effective search space: 307930816
Effective search space used: 307930816
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)