Query psy13435
Match_columns 75
No_of_seqs 130 out of 1014
Neff 8.0
Searched_HMMs 46136
Date Fri Aug 16 19:22:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13435.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13435hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00109 KU BPTI/Kunitz family 99.8 1.7E-20 3.7E-25 97.6 5.6 54 12-65 1-54 (54)
2 smart00131 KU BPTI/Kunitz fami 99.8 3.1E-20 6.7E-25 96.3 5.7 53 12-64 1-53 (53)
3 PF00014 Kunitz_BPTI: Kunitz/B 99.8 5.9E-20 1.3E-24 94.8 6.7 53 13-65 1-53 (53)
4 KOG4295|consensus 99.6 9.2E-15 2E-19 96.4 6.0 61 9-69 74-137 (295)
5 KOG4597|consensus 97.1 0.00015 3.2E-09 51.9 0.4 53 10-68 372-424 (560)
6 KOG4597|consensus 96.7 0.0015 3.3E-08 46.9 3.1 55 10-65 311-369 (560)
7 KOG3540|consensus 96.2 0.0026 5.6E-08 45.9 1.6 57 11-67 107-163 (615)
8 KOG4295|consensus 69.4 2.3 5E-05 27.9 0.8 28 41-68 2-29 (295)
9 PF00397 WW: WW domain; Inter 29.6 56 0.0012 14.3 1.7 13 27-39 14-26 (31)
10 PF01607 CBM_14: Chitin bindin 22.8 66 0.0014 15.0 1.4 12 30-41 35-46 (53)
11 cd00201 WW Two conserved trypt 20.2 92 0.002 13.0 1.6 11 28-38 13-23 (31)
No 1
>cd00109 KU BPTI/Kunitz family of serine protease inhibitors; Structure is a disulfide rich alpha+beta fold. BPTI (bovine pancreatic trypsin inhibitor) is an extensively studied model structure.
Probab=99.83 E-value=1.7e-20 Score=97.57 Aligned_cols=54 Identities=54% Similarity=1.211 Sum_probs=51.7
Q ss_pred ccccCCCcccCCCCCeeeEEEeCCCCceeEEEeCCccCCCCcccCHHHHHHhcc
Q psy13435 12 AKCHLKPVTGNCRASLHRYYFDTKTLTCTSFIYGGCGGNANNFVKRKDCERQCA 65 (75)
Q Consensus 12 ~~C~~p~~~g~C~~~~~~w~yn~~~~~C~~f~~~gC~gn~N~F~t~~~C~~~C~ 65 (75)
++|.+|++.|.|.+.+.+||||+.+++|+.|.|.||+++.|+|.|+++|+++|+
T Consensus 1 ~~C~~~~~~g~C~~~~~~~~yd~~~~~C~~f~~~gc~~~~N~F~s~~~C~~~C~ 54 (54)
T cd00109 1 DVCSLPPDTGPCKAYIPRYYYDATTKQCEPFTYGGCGGNANNFATKEECERTCG 54 (54)
T ss_pred CcccCCCCCCCCCCCccEEEEeCCCCccceeECCCccCCccCcCCHHHHHhhcc
Confidence 479999999999999999999999999999999999999999999999999995
No 2
>smart00131 KU BPTI/Kunitz family of serine protease inhibitors. Serine protease inhibitors. One member of the family is encoded by an alternatively-spliced form of Alzheimer's amyloid beta-protein.
Probab=99.82 E-value=3.1e-20 Score=96.28 Aligned_cols=53 Identities=57% Similarity=1.173 Sum_probs=50.9
Q ss_pred ccccCCCcccCCCCCeeeEEEeCCCCceeEEEeCCccCCCCcccCHHHHHHhc
Q psy13435 12 AKCHLKPVTGNCRASLHRYYFDTKTLTCTSFIYGGCGGNANNFVKRKDCERQC 64 (75)
Q Consensus 12 ~~C~~p~~~g~C~~~~~~w~yn~~~~~C~~f~~~gC~gn~N~F~t~~~C~~~C 64 (75)
.+|.+|++.|.|.+...+||||+.+++|+.|.|.||.++.|+|.|.++|++.|
T Consensus 1 ~~C~~~~~~g~c~~~~~~w~yd~~~~~C~~f~~~gc~~n~N~F~t~~~C~~~C 53 (53)
T smart00131 1 DVCLLPPDTGPCGGSIPRYYYDPETGTCEPFTYGGCGGNANNFESLEECERTC 53 (53)
T ss_pred CcccCCCCCCCCCCCeeEEEEeCCCCccceeECCCccCCCCCcCCHHHHHhhC
Confidence 47999999999999999999999999999999999999999999999999987
No 3
>PF00014 Kunitz_BPTI: Kunitz/Bovine pancreatic trypsin inhibitor domain; InterPro: IPR002223 The majority of the sequences having this domain belong to the MEROPS inhibitor family I2, clan IB; the Kunitz/bovine pancreatic trypsin inhibitor family, they inhibit proteases of the S1 family [] and are restricted to the metazoa with a single exception: Amsacta moorei entomopoxvirus. They are short (~50 residue) alpha/beta proteins with few secondary structures. The fold is constrained by 3 disulphide bonds. The type example for this family is aprotinin (bovine pancreatic trypsin inhibitor) [] (or basic protease inhibitor), but the family includes numerous other members [, , , ], such as snake venom basic protease; mammalian inter-alpha-trypsin inhibitors; trypstatin, a rodent mast cell inhibitor of trypsin; a domain found in an alternatively-spliced form of Alzheimer's amyloid beta-protein; domains at the C-termini of the alpha(1) and alpha(3) chains of type VII and type VI collagens; and tissue factor pathway inhibitor precursor.; GO: 0004867 serine-type endopeptidase inhibitor activity; PDB: 1YC0_I 4DTG_K 1TFX_D 1ADZ_A 1BF0_A 3OFW_A 1SHP_A 3M7Q_B 3GYM_J 1BHC_G ....
Probab=99.82 E-value=5.9e-20 Score=94.79 Aligned_cols=53 Identities=42% Similarity=1.029 Sum_probs=51.1
Q ss_pred cccCCCcccCCCCCeeeEEEeCCCCceeEEEeCCccCCCCcccCHHHHHHhcc
Q psy13435 13 KCHLKPVTGNCRASLHRYYFDTKTLTCTSFIYGGCGGNANNFVKRKDCERQCA 65 (75)
Q Consensus 13 ~C~~p~~~g~C~~~~~~w~yn~~~~~C~~f~~~gC~gn~N~F~t~~~C~~~C~ 65 (75)
+|.+|++.|.|.....+||||+.+++|+.|.+.||+++.|+|.|+++|+++|+
T Consensus 1 ~C~~p~~~g~C~~~~~~w~yn~~~~~C~~f~~~~c~~~~N~F~t~~~C~~~C~ 53 (53)
T PF00014_consen 1 VCLLPPDEGPCSGNEPRWYYNPSTGRCEQFWYGGCGGNENNFPTEEECQKTCG 53 (53)
T ss_dssp GGGSTCTCTSSSSCEEEEEEETTTTEEEEEEECSSSSSSSCBSSHHHHHHHHT
T ss_pred CCCCCCcCCCCCCCccEEEEeCCCCcEEEeEccccCCCCcCCCCHHHHHHHcC
Confidence 59999999999999999999999999999999999999999999999999995
No 4
>KOG4295|consensus
Probab=99.55 E-value=9.2e-15 Score=96.35 Aligned_cols=61 Identities=48% Similarity=0.960 Sum_probs=56.5
Q ss_pred cccccccCCCcccCCC---CCeeeEEEeCCCCceeEEEeCCccCCCCcccCHHHHHHhcccccc
Q psy13435 9 KKEAKCHLKPVTGNCR---ASLHRYYFDTKTLTCTSFIYGGCGGNANNFVKRKDCERQCAKYFT 69 (75)
Q Consensus 9 ~~~~~C~~p~~~g~C~---~~~~~w~yn~~~~~C~~f~~~gC~gn~N~F~t~~~C~~~C~~~~~ 69 (75)
....+|.++.+.|.|. ..+.|||||..+.+|..|+|+||+||.|+|.|.++|...|.....
T Consensus 74 ~~~~~C~~~~~~g~~~~~~~~~~r~~~d~~t~~C~~F~y~GC~gN~N~F~s~~~C~~~C~~~~~ 137 (295)
T KOG4295|consen 74 TKNEICDQPKDVGLCCCCGTGSPRYYFDPKTKTCQPFIYGGCGGNSNNFLSSEECERACGSADQ 137 (295)
T ss_pred CCCcccCCchhhcccccCCCceeeeEEcCCCCeEeeeeecCcCCCcCcccCHHHHHHHhcCCCc
Confidence 5678999999999887 789999999999999999999999999999999999999987643
No 5
>KOG4597|consensus
Probab=97.10 E-value=0.00015 Score=51.90 Aligned_cols=53 Identities=25% Similarity=0.481 Sum_probs=45.6
Q ss_pred ccccccCCCcccCCCCCeeeEEEeCCCCceeEEEeCCccCCCCcccCHHHHHHhccccc
Q psy13435 10 KEAKCHLKPVTGNCRASLHRYYFDTKTLTCTSFIYGGCGGNANNFVKRKDCERQCAKYF 68 (75)
Q Consensus 10 ~~~~C~~p~~~g~C~~~~~~w~yn~~~~~C~~f~~~gC~gn~N~F~t~~~C~~~C~~~~ 68 (75)
..+.|.+|-..|+| ....+|+|++.+ +|. ++|++|+|+|.+...|...|.-.+
T Consensus 372 ~~pad~~pc~~GPC-~~e~rW~~s~ws-qCs----~eCg~g~~~r~vica~~~a~~f~v 424 (560)
T KOG4597|consen 372 PRPADTRPCAQGPC-PCEPRWAYSPWS-QCS----GECGGGGNNREVICACEQACPFEV 424 (560)
T ss_pred CCCccccccccCCC-CCccceeecchh-hhc----cccCCCCcceeEEEeeecCCCccc
Confidence 45667778889999 778999999998 997 799999999999999998887655
No 6
>KOG4597|consensus
Probab=96.74 E-value=0.0015 Score=46.86 Aligned_cols=55 Identities=24% Similarity=0.408 Sum_probs=45.8
Q ss_pred ccccccCCCcccCCCCC----eeeEEEeCCCCceeEEEeCCccCCCCcccCHHHHHHhcc
Q psy13435 10 KEAKCHLKPVTGNCRAS----LHRYYFDTKTLTCTSFIYGGCGGNANNFVKRKDCERQCA 65 (75)
Q Consensus 10 ~~~~C~~p~~~g~C~~~----~~~w~yn~~~~~C~~f~~~gC~gn~N~F~t~~~C~~~C~ 65 (75)
+++.|+. ++.|.|.+. .-+|.|+..-+.|+.|...+|.++.++|.+++.|+..|.
T Consensus 311 ~~~e~~~-cdmgpC~g~~f~tew~~~~~aqcg~~~~~rsv~C~~s~~~~~p~E~C~~a~~ 369 (560)
T KOG4597|consen 311 KPAECLT-CDMGPCTGLTFVTEWSWHLDAQCGDCETTRSVVCKGSQGRFEPLEACLVACA 369 (560)
T ss_pred CchhhcC-CCCcccCCccchhhhhhhcccccCCceeeeeeeecCccccccchhhhhhhcc
Confidence 3445555 778888853 345679999999999999999999999999999999994
No 7
>KOG3540|consensus
Probab=96.20 E-value=0.0026 Score=45.86 Aligned_cols=57 Identities=16% Similarity=0.035 Sum_probs=51.0
Q ss_pred cccccCCCcccCCCCCeeeEEEeCCCCceeEEEeCCccCCCCcccCHHHHHHhcccc
Q psy13435 11 EAKCHLKPVTGNCRASLHRYYFDTKTLTCTSFIYGGCGGNANNFVKRKDCERQCAKY 67 (75)
Q Consensus 11 ~~~C~~p~~~g~C~~~~~~w~yn~~~~~C~~f~~~gC~gn~N~F~t~~~C~~~C~~~ 67 (75)
-..|..+...+.|.....+|-|++.-..|+-|...+|+++.|+|....+|+.+|...
T Consensus 107 ck~~~h~Vrp~~Cl~gefvseallvp~kC~ffh~ermD~cEn~~hwh~ea~etC~tk 163 (615)
T KOG3540|consen 107 CKFCLHPVRPYRCLAGEFVSEALLVPEKCQFFHQERMDQCENNQHWHKEAMETCSTK 163 (615)
T ss_pred ccccCcccccceeecCcchhhhccCcccchhhhccccccccchHHHHHHHHHHhccC
Confidence 345556667889999999999999999999999999999999999999999999865
No 8
>KOG4295|consensus
Probab=69.40 E-value=2.3 Score=27.95 Aligned_cols=28 Identities=46% Similarity=0.923 Sum_probs=24.7
Q ss_pred EEEeCCccCCCCcccCHHHHHHhccccc
Q psy13435 41 SFIYGGCGGNANNFVKRKDCERQCAKYF 68 (75)
Q Consensus 41 ~f~~~gC~gn~N~F~t~~~C~~~C~~~~ 68 (75)
.|.+.+|.++.|.|.+.++|...|....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 29 (295)
T KOG4295|consen 2 SFKYNGCPGNSNNFFSSEDCQVRCCVGG 29 (295)
T ss_pred CccccCCCCCccceeehhhhceeecccc
Confidence 4678899999999999999999987665
No 9
>PF00397 WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp5 or WWP domain The WW domain is a short conserved region in a number of unrelated proteins, which folds as a stable, triple stranded beta-sheet. This short domain of approximately 40 amino acids, may be repeated up to four times in some proteins [, , , ]. The name WW or WWP derives from the presence of two signature tryptophan residues that are spaced 20-23 amino acids apart and are present in most WW domains known to date, as well as that of a conserved Pro. The WW domain binds to proteins with particular proline-motifs, [AP]-P-P-[AP]-Y, and/or phosphoserine- phosphothreonine-containing motifs [, ]. It is frequently associated with other domains typical for proteins in signal transduction processes. A large variety of proteins containing the WW domain are known. These include; dystrophin, a multidomain cytoskeletal protein; utrophin, a dystrophin-like protein of unknown function; vertebrate YAP protein, substrate of an unknown serine kinase; Mus musculus (Mouse) NEDD-4, involved in the embryonic development and differentiation of the central nervous system; Saccharomyces cerevisiae (Baker's yeast) RSP5, similar to NEDD-4 in its molecular organisation; Rattus norvegicus (Rat) FE65, a transcription-factor activator expressed preferentially in liver; Nicotiana tabacum (Common tobacco) DB10 protein, amongst others.; GO: 0005515 protein binding; PDB: 2JXW_A 2DK1_A 2JOC_A 2JO9_A 1YIU_A 1O6W_A 2JMF_A 1TK7_A 2KYK_A 2L5F_A ....
Probab=29.63 E-value=56 Score=14.27 Aligned_cols=13 Identities=23% Similarity=0.442 Sum_probs=9.4
Q ss_pred eeeEEEeCCCCce
Q psy13435 27 LHRYYFDTKTLTC 39 (75)
Q Consensus 27 ~~~w~yn~~~~~C 39 (75)
...||||..++.-
T Consensus 14 g~~YY~N~~t~~s 26 (31)
T PF00397_consen 14 GRPYYYNHETGES 26 (31)
T ss_dssp SEEEEEETTTTEE
T ss_pred CCEEEEeCCCCCE
Confidence 3568999888753
No 10
>PF01607 CBM_14: Chitin binding Peritrophin-A domain; InterPro: IPR002557 This entry represents a chitin binding domain []. It is found in (amongst others) the Peritrophin-A chitin binding proteins, particularly the peritrophic matrix proteins of insects and animal chitinases [, , ]. Copies of the domain are also found in some baculoviruses. It is an extracellular domain that contains six conserved cysteines that probably form three disulphide bridges. Chitin binding has been demonstrated for a protein containing only two of these domains [].; GO: 0008061 chitin binding, 0006030 chitin metabolic process, 0005576 extracellular region; PDB: 1DQC_A.
Probab=22.76 E-value=66 Score=15.01 Aligned_cols=12 Identities=33% Similarity=0.869 Sum_probs=8.4
Q ss_pred EEEeCCCCceeE
Q psy13435 30 YYFDTKTLTCTS 41 (75)
Q Consensus 30 w~yn~~~~~C~~ 41 (75)
.+||..+.+|..
T Consensus 35 ~~fd~~~~~C~~ 46 (53)
T PF01607_consen 35 LYFDPSSQRCVP 46 (53)
T ss_dssp -EE-TTTSSEE-
T ss_pred CEECcCcCEEcC
Confidence 489999999985
No 11
>cd00201 WW Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs.
Probab=20.18 E-value=92 Score=12.95 Aligned_cols=11 Identities=27% Similarity=0.676 Sum_probs=8.5
Q ss_pred eeEEEeCCCCc
Q psy13435 28 HRYYFDTKTLT 38 (75)
Q Consensus 28 ~~w~yn~~~~~ 38 (75)
..||||..++.
T Consensus 13 ~~yy~n~~t~~ 23 (31)
T cd00201 13 RVYYYNHNTKE 23 (31)
T ss_pred CEEEEECCCCC
Confidence 56889987765
Done!