RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy13435
         (75 letters)



>gnl|CDD|197529 smart00131, KU, BPTI/Kunitz family of serine protease inhibitors.
           Serine protease inhibitors. One member of the family
          is encoded by an alternatively-spliced form of
          Alzheimer's amyloid beta-protein.
          Length = 53

 Score = 75.4 bits (186), Expect = 2e-20
 Identities = 30/51 (58%), Positives = 35/51 (68%)

Query: 14 CHLKPVTGNCRASLHRYYFDTKTLTCTSFIYGGCGGNANNFVKRKDCERQC 64
          C L P TG C  S+ RYY+D +T TC  F YGGCGGNANNF   ++CER C
Sbjct: 3  CLLPPDTGPCGGSIPRYYYDPETGTCEPFTYGGCGGNANNFESLEECERTC 53


>gnl|CDD|238057 cd00109, KU, BPTI/Kunitz family of serine protease inhibitors;
          Structure is a disulfide rich alpha+beta fold. BPTI
          (bovine pancreatic trypsin inhibitor) is an extensively
          studied model structure.
          Length = 54

 Score = 72.7 bits (179), Expect = 3e-19
 Identities = 29/51 (56%), Positives = 35/51 (68%)

Query: 14 CHLKPVTGNCRASLHRYYFDTKTLTCTSFIYGGCGGNANNFVKRKDCERQC 64
          C L P TG C+A + RYY+D  T  C  F YGGCGGNANNF  +++CER C
Sbjct: 3  CSLPPDTGPCKAYIPRYYYDATTKQCEPFTYGGCGGNANNFATKEECERTC 53


>gnl|CDD|200929 pfam00014, Kunitz_BPTI, Kunitz/Bovine pancreatic trypsin
          inhibitor domain.  Indicative of a protease inhibitor,
          usually a serine protease inhibitor. Structure is a
          disulfide rich alpha+beta fold. BPTI (bovine pancreatic
          trypsin inhibitor) is an extensively studied model
          structure. Certain family members are similar to the
          tick anticoagulant peptide (TAP). This is a highly
          selective inhibitor of factor Xa in the blood
          coagulation pathways. TAP molecules are highly dipolar,
          and are arranged to form a twisted two- stranded
          antiparallel beta-sheet followed by an alpha helix.
          Length = 53

 Score = 70.8 bits (174), Expect = 1e-18
 Identities = 27/51 (52%), Positives = 34/51 (66%)

Query: 14 CHLKPVTGNCRASLHRYYFDTKTLTCTSFIYGGCGGNANNFVKRKDCERQC 64
          C L P  G CR S+ R+Y++  T  C  FIYGGCGGNANNF   ++CE+ C
Sbjct: 2  CLLPPDPGPCRGSIPRWYYNPSTGQCEPFIYGGCGGNANNFESLEECEKAC 52


>gnl|CDD|220999 pfam11144, DUF2920, Protein of unknown function (DUF2920).  This
          bacterial family of proteins has no known function.
          Length = 403

 Score = 26.1 bits (58), Expect = 1.9
 Identities = 17/51 (33%), Positives = 19/51 (37%), Gaps = 4/51 (7%)

Query: 21 GNCRASLHRY---YFDTKTLTCTSFIYGGCGGNANNFVKRKDCERQCAKYF 68
          G  R S   Y   Y D K +    FI  G G +AN        E   AK F
Sbjct: 15 GIKRESKLEYRISYDDEKEIKAIVFIIPGFGADANISYLDFFRE-YVAKNF 64


>gnl|CDD|225724 COG3183, COG3183, Predicted restriction endonuclease [Defense
           mechanisms].
          Length = 272

 Score = 25.2 bits (55), Expect = 3.5
 Identities = 8/28 (28%), Positives = 11/28 (39%), Gaps = 2/28 (7%)

Query: 5   EEERKKE--AKCHLKPVTGNCRASLHRY 30
           E E +        L P+  NC   +HR 
Sbjct: 227 EFEGEYHVNPLTDLAPLCPNCHKMVHRR 254


>gnl|CDD|185155 PRK15243, PRK15243, transcriptional regulator SpvR; Provisional.
          Length = 297

 Score = 25.0 bits (54), Expect = 3.6
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 20  TGNCRASLHRYYFDTKTLTCTSFIYGG 46
           T NC     R YF  ++L C + + GG
Sbjct: 139 TNNCIVISARNYFHRESLVCRTSVEGG 165


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.321    0.134    0.433 

Gapped
Lambda     K      H
   0.267   0.0753    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,507,635
Number of extensions: 239492
Number of successful extensions: 189
Number of sequences better than 10.0: 1
Number of HSP's gapped: 189
Number of HSP's successfully gapped: 8
Length of query: 75
Length of database: 10,937,602
Length adjustment: 45
Effective length of query: 30
Effective length of database: 8,941,672
Effective search space: 268250160
Effective search space used: 268250160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.1 bits)