Query psy13436
Match_columns 67
No_of_seqs 163 out of 1030
Neff 8.3
Searched_HMMs 46136
Date Fri Aug 16 19:23:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13436.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13436hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00109 KU BPTI/Kunitz family 99.9 4.4E-22 9.6E-27 99.5 5.7 54 12-65 1-54 (54)
2 smart00131 KU BPTI/Kunitz fami 99.9 1E-21 2.2E-26 97.9 5.8 53 12-64 1-53 (53)
3 PF00014 Kunitz_BPTI: Kunitz/B 99.9 2.5E-21 5.4E-26 96.1 6.7 53 13-65 1-53 (53)
4 KOG4295|consensus 99.6 4.1E-16 8.9E-21 98.4 5.4 58 9-66 74-134 (295)
5 KOG4597|consensus 97.4 3.6E-05 7.8E-10 52.7 0.1 49 10-64 372-420 (560)
6 KOG3540|consensus 97.0 0.00026 5.7E-09 48.7 1.2 54 12-65 108-161 (615)
7 KOG4597|consensus 96.8 0.0013 2.8E-08 45.3 3.2 54 10-64 311-368 (560)
8 KOG4295|consensus 70.5 1.5 3.2E-05 27.7 0.1 25 41-65 2-26 (295)
9 PF00397 WW: WW domain; Inter 40.7 30 0.00064 14.6 1.7 13 27-39 14-26 (31)
10 PLN00416 carbonate dehydratase 31.9 89 0.0019 20.2 3.5 21 25-45 228-248 (258)
11 cd00201 WW Two conserved trypt 29.3 52 0.0011 13.3 1.6 12 28-39 13-24 (31)
12 smart00456 WW Domain with 2 co 29.1 55 0.0012 13.4 1.6 12 28-39 14-25 (32)
13 cd01099 PAN_AP_HGF Subfamily o 28.7 43 0.00094 17.2 1.4 12 55-66 25-36 (80)
14 PF12904 Collagen_bind_2: Puta 28.6 55 0.0012 17.8 1.8 16 26-41 48-63 (93)
15 PF08276 PAN_2: PAN-like domai 28.5 48 0.001 16.4 1.5 12 55-66 27-38 (66)
16 PF01607 CBM_14: Chitin bindin 28.2 48 0.001 14.9 1.4 12 30-41 35-46 (53)
17 smart00473 PAN_AP divergent su 27.5 48 0.001 16.0 1.4 14 53-66 23-36 (78)
18 PF12989 DUF3873: Domain of un 27.0 43 0.00093 17.4 1.2 28 37-66 32-63 (69)
19 cd01098 PAN_AP_plant Plant PAN 25.8 46 0.001 16.5 1.2 13 54-66 31-43 (84)
20 PF14295 PAN_4: PAN domain; PD 25.4 42 0.00091 15.1 0.9 13 53-65 14-26 (51)
21 PF00355 Rieske: Rieske [2Fe-2 24.4 85 0.0018 16.2 2.1 14 28-41 67-80 (97)
22 cd01100 APPLE_Factor_XI_like S 23.1 68 0.0015 16.0 1.5 13 54-66 24-36 (73)
23 PF12071 DUF3551: Protein of u 22.2 1.1E+02 0.0024 16.2 2.3 26 37-63 31-56 (82)
24 cd00129 PAN_APPLE PAN/APPLE-li 20.3 64 0.0014 16.9 1.1 14 53-66 23-36 (80)
No 1
>cd00109 KU BPTI/Kunitz family of serine protease inhibitors; Structure is a disulfide rich alpha+beta fold. BPTI (bovine pancreatic trypsin inhibitor) is an extensively studied model structure.
Probab=99.87 E-value=4.4e-22 Score=99.53 Aligned_cols=54 Identities=54% Similarity=1.211 Sum_probs=51.8
Q ss_pred CccccCCcccCCCCCeeeEEEeCCCCceeEEEecCcCCCCCCcCCHHHHHHhcc
Q psy13436 12 AKCHLKPVTGNCRASLHRYYFDTKTLTCTSFIYGGCGGNANNFVKRKDCERQCA 65 (67)
Q Consensus 12 ~~C~~p~~~g~C~~~~~~w~yn~~~~~C~~f~~~gC~gn~N~F~t~~~C~~~C~ 65 (67)
++|.+|++.|.|.+.+++||||+.+++|+.|.|+||++|.|+|.|+++|+++|.
T Consensus 1 ~~C~~~~~~g~C~~~~~~~~yd~~~~~C~~f~~~gc~~~~N~F~s~~~C~~~C~ 54 (54)
T cd00109 1 DVCSLPPDTGPCKAYIPRYYYDATTKQCEPFTYGGCGGNANNFATKEECERTCG 54 (54)
T ss_pred CcccCCCCCCCCCCCccEEEEeCCCCccceeECCCccCCccCcCCHHHHHhhcc
Confidence 479999999999999999999999999999999999999999999999999995
No 2
>smart00131 KU BPTI/Kunitz family of serine protease inhibitors. Serine protease inhibitors. One member of the family is encoded by an alternatively-spliced form of Alzheimer's amyloid beta-protein.
Probab=99.86 E-value=1e-21 Score=97.91 Aligned_cols=53 Identities=57% Similarity=1.173 Sum_probs=51.0
Q ss_pred CccccCCcccCCCCCeeeEEEeCCCCceeEEEecCcCCCCCCcCCHHHHHHhc
Q psy13436 12 AKCHLKPVTGNCRASLHRYYFDTKTLTCTSFIYGGCGGNANNFVKRKDCERQC 64 (67)
Q Consensus 12 ~~C~~p~~~g~C~~~~~~w~yn~~~~~C~~f~~~gC~gn~N~F~t~~~C~~~C 64 (67)
.+|.+|++.|.|.+..++||||+.+++|+.|.|.||++|.|+|.|+++|+++|
T Consensus 1 ~~C~~~~~~g~c~~~~~~w~yd~~~~~C~~f~~~gc~~n~N~F~t~~~C~~~C 53 (53)
T smart00131 1 DVCLLPPDTGPCGGSIPRYYYDPETGTCEPFTYGGCGGNANNFESLEECERTC 53 (53)
T ss_pred CcccCCCCCCCCCCCeeEEEEeCCCCccceeECCCccCCCCCcCCHHHHHhhC
Confidence 47999999999999999999999999999999999999999999999999988
No 3
>PF00014 Kunitz_BPTI: Kunitz/Bovine pancreatic trypsin inhibitor domain; InterPro: IPR002223 The majority of the sequences having this domain belong to the MEROPS inhibitor family I2, clan IB; the Kunitz/bovine pancreatic trypsin inhibitor family, they inhibit proteases of the S1 family [] and are restricted to the metazoa with a single exception: Amsacta moorei entomopoxvirus. They are short (~50 residue) alpha/beta proteins with few secondary structures. The fold is constrained by 3 disulphide bonds. The type example for this family is aprotinin (bovine pancreatic trypsin inhibitor) [] (or basic protease inhibitor), but the family includes numerous other members [, , , ], such as snake venom basic protease; mammalian inter-alpha-trypsin inhibitors; trypstatin, a rodent mast cell inhibitor of trypsin; a domain found in an alternatively-spliced form of Alzheimer's amyloid beta-protein; domains at the C-termini of the alpha(1) and alpha(3) chains of type VII and type VI collagens; and tissue factor pathway inhibitor precursor.; GO: 0004867 serine-type endopeptidase inhibitor activity; PDB: 1YC0_I 4DTG_K 1TFX_D 1ADZ_A 1BF0_A 3OFW_A 1SHP_A 3M7Q_B 3GYM_J 1BHC_G ....
Probab=99.86 E-value=2.5e-21 Score=96.08 Aligned_cols=53 Identities=42% Similarity=1.029 Sum_probs=51.1
Q ss_pred ccccCCcccCCCCCeeeEEEeCCCCceeEEEecCcCCCCCCcCCHHHHHHhcc
Q psy13436 13 KCHLKPVTGNCRASLHRYYFDTKTLTCTSFIYGGCGGNANNFVKRKDCERQCA 65 (67)
Q Consensus 13 ~C~~p~~~g~C~~~~~~w~yn~~~~~C~~f~~~gC~gn~N~F~t~~~C~~~C~ 65 (67)
+|.+|++.|.|.....+||||+.+++|+.|.+.||+++.|+|.|+++|+++|+
T Consensus 1 ~C~~p~~~g~C~~~~~~w~yn~~~~~C~~f~~~~c~~~~N~F~t~~~C~~~C~ 53 (53)
T PF00014_consen 1 VCLLPPDEGPCSGNEPRWYYNPSTGRCEQFWYGGCGGNENNFPTEEECQKTCG 53 (53)
T ss_dssp GGGSTCTCTSSSSCEEEEEEETTTTEEEEEEECSSSSSSSCBSSHHHHHHHHT
T ss_pred CCCCCCcCCCCCCCccEEEEeCCCCcEEEeEccccCCCCcCCCCHHHHHHHcC
Confidence 59999999999999999999999999999999999999999999999999995
No 4
>KOG4295|consensus
Probab=99.64 E-value=4.1e-16 Score=98.35 Aligned_cols=58 Identities=50% Similarity=1.048 Sum_probs=54.4
Q ss_pred cCCCccccCCcccCCC---CCeeeEEEeCCCCceeEEEecCcCCCCCCcCCHHHHHHhccC
Q psy13436 9 KKEAKCHLKPVTGNCR---ASLHRYYFDTKTLTCTSFIYGGCGGNANNFVKRKDCERQCAK 66 (67)
Q Consensus 9 ~~~~~C~~p~~~g~C~---~~~~~w~yn~~~~~C~~f~~~gC~gn~N~F~t~~~C~~~C~~ 66 (67)
....+|.+|.+.|.|. ..+.|||||..+.+|.+|.|+||+||.|+|.|.++|...|..
T Consensus 74 ~~~~~C~~~~~~g~~~~~~~~~~r~~~d~~t~~C~~F~y~GC~gN~N~F~s~~~C~~~C~~ 134 (295)
T KOG4295|consen 74 TKNEICDQPKDVGLCCCCGTGSPRYYFDPKTKTCQPFIYGGCGGNSNNFLSSEECERACGS 134 (295)
T ss_pred CCCcccCCchhhcccccCCCceeeeEEcCCCCeEeeeeecCcCCCcCcccCHHHHHHHhcC
Confidence 5678999999999777 789999999999999999999999999999999999999975
No 5
>KOG4597|consensus
Probab=97.41 E-value=3.6e-05 Score=52.65 Aligned_cols=49 Identities=27% Similarity=0.558 Sum_probs=42.3
Q ss_pred CCCccccCCcccCCCCCeeeEEEeCCCCceeEEEecCcCCCCCCcCCHHHHHHhc
Q psy13436 10 KEAKCHLKPVTGNCRASLHRYYFDTKTLTCTSFIYGGCGGNANNFVKRKDCERQC 64 (67)
Q Consensus 10 ~~~~C~~p~~~g~C~~~~~~w~yn~~~~~C~~f~~~gC~gn~N~F~t~~~C~~~C 64 (67)
..+.|.+|-..|+| ...+||+|++.+ +|. ++|++|+|+|.+...|+..|
T Consensus 372 ~~pad~~pc~~GPC-~~e~rW~~s~ws-qCs----~eCg~g~~~r~vica~~~a~ 420 (560)
T KOG4597|consen 372 PRPADTRPCAQGPC-PCEPRWAYSPWS-QCS----GECGGGGNNREVICACEQAC 420 (560)
T ss_pred CCCccccccccCCC-CCccceeecchh-hhc----cccCCCCcceeEEEeeecCC
Confidence 45677888889999 778999999998 997 89999999999988887665
No 6
>KOG3540|consensus
Probab=97.05 E-value=0.00026 Score=48.70 Aligned_cols=54 Identities=17% Similarity=0.068 Sum_probs=49.4
Q ss_pred CccccCCcccCCCCCeeeEEEeCCCCceeEEEecCcCCCCCCcCCHHHHHHhcc
Q psy13436 12 AKCHLKPVTGNCRASLHRYYFDTKTLTCTSFIYGGCGGNANNFVKRKDCERQCA 65 (67)
Q Consensus 12 ~~C~~p~~~g~C~~~~~~w~yn~~~~~C~~f~~~gC~gn~N~F~t~~~C~~~C~ 65 (67)
..|..+..++.|....++|-|++--..|+-|...+|+++.|+|....+|+++|.
T Consensus 108 k~~~h~Vrp~~Cl~gefvseallvp~kC~ffh~ermD~cEn~~hwh~ea~etC~ 161 (615)
T KOG3540|consen 108 KFCLHPVRPYRCLAGEFVSEALLVPEKCQFFHQERMDQCENNQHWHKEAMETCS 161 (615)
T ss_pred cccCcccccceeecCcchhhhccCcccchhhhccccccccchHHHHHHHHHHhc
Confidence 445566678899999999999999999999999999999999999999999996
No 7
>KOG4597|consensus
Probab=96.85 E-value=0.0013 Score=45.33 Aligned_cols=54 Identities=22% Similarity=0.401 Sum_probs=45.5
Q ss_pred CCCccccCCcccCCCCC----eeeEEEeCCCCceeEEEecCcCCCCCCcCCHHHHHHhc
Q psy13436 10 KEAKCHLKPVTGNCRAS----LHRYYFDTKTLTCTSFIYGGCGGNANNFVKRKDCERQC 64 (67)
Q Consensus 10 ~~~~C~~p~~~g~C~~~----~~~w~yn~~~~~C~~f~~~gC~gn~N~F~t~~~C~~~C 64 (67)
.++.|.. ++.|.|.+. ..+|.|+..-+.|+.|...+|.++.++|.+.+.|+..|
T Consensus 311 ~~~e~~~-cdmgpC~g~~f~tew~~~~~aqcg~~~~~rsv~C~~s~~~~~p~E~C~~a~ 368 (560)
T KOG4597|consen 311 KPAECLT-CDMGPCTGLTFVTEWSWHLDAQCGDCETTRSVVCKGSQGRFEPLEACLVAC 368 (560)
T ss_pred CchhhcC-CCCcccCCccchhhhhhhcccccCCceeeeeeeecCccccccchhhhhhhc
Confidence 3455655 788888843 35677999999999999999999999999999999888
No 8
>KOG4295|consensus
Probab=70.53 E-value=1.5 Score=27.69 Aligned_cols=25 Identities=52% Similarity=1.178 Sum_probs=21.8
Q ss_pred EEEecCcCCCCCCcCCHHHHHHhcc
Q psy13436 41 SFIYGGCGGNANNFVKRKDCERQCA 65 (67)
Q Consensus 41 ~f~~~gC~gn~N~F~t~~~C~~~C~ 65 (67)
.|.+.||.++.|.|.+.++|...|.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~ 26 (295)
T KOG4295|consen 2 SFKYNGCPGNSNNFFSSEDCQVRCC 26 (295)
T ss_pred CccccCCCCCccceeehhhhceeec
Confidence 4678899999999999999988764
No 9
>PF00397 WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp5 or WWP domain The WW domain is a short conserved region in a number of unrelated proteins, which folds as a stable, triple stranded beta-sheet. This short domain of approximately 40 amino acids, may be repeated up to four times in some proteins [, , , ]. The name WW or WWP derives from the presence of two signature tryptophan residues that are spaced 20-23 amino acids apart and are present in most WW domains known to date, as well as that of a conserved Pro. The WW domain binds to proteins with particular proline-motifs, [AP]-P-P-[AP]-Y, and/or phosphoserine- phosphothreonine-containing motifs [, ]. It is frequently associated with other domains typical for proteins in signal transduction processes. A large variety of proteins containing the WW domain are known. These include; dystrophin, a multidomain cytoskeletal protein; utrophin, a dystrophin-like protein of unknown function; vertebrate YAP protein, substrate of an unknown serine kinase; Mus musculus (Mouse) NEDD-4, involved in the embryonic development and differentiation of the central nervous system; Saccharomyces cerevisiae (Baker's yeast) RSP5, similar to NEDD-4 in its molecular organisation; Rattus norvegicus (Rat) FE65, a transcription-factor activator expressed preferentially in liver; Nicotiana tabacum (Common tobacco) DB10 protein, amongst others.; GO: 0005515 protein binding; PDB: 2JXW_A 2DK1_A 2JOC_A 2JO9_A 1YIU_A 1O6W_A 2JMF_A 1TK7_A 2KYK_A 2L5F_A ....
Probab=40.74 E-value=30 Score=14.62 Aligned_cols=13 Identities=23% Similarity=0.442 Sum_probs=9.5
Q ss_pred eeeEEEeCCCCce
Q psy13436 27 LHRYYFDTKTLTC 39 (67)
Q Consensus 27 ~~~w~yn~~~~~C 39 (67)
-..||||..++.-
T Consensus 14 g~~YY~N~~t~~s 26 (31)
T PF00397_consen 14 GRPYYYNHETGES 26 (31)
T ss_dssp SEEEEEETTTTEE
T ss_pred CCEEEEeCCCCCE
Confidence 3568999888753
No 10
>PLN00416 carbonate dehydratase
Probab=31.90 E-value=89 Score=20.16 Aligned_cols=21 Identities=5% Similarity=-0.064 Sum_probs=17.2
Q ss_pred CCeeeEEEeCCCCceeEEEec
Q psy13436 25 ASLHRYYFDTKTLTCTSFIYG 45 (67)
Q Consensus 25 ~~~~~w~yn~~~~~C~~f~~~ 45 (67)
-.+..|+||..++.-..|.+.
T Consensus 228 l~I~G~~Ydl~TG~v~~~~~~ 248 (258)
T PLN00416 228 LAIRGGHYNFVKGTFDLWELD 248 (258)
T ss_pred cEEEEEEEECCCceEEEeccC
Confidence 357899999999999876654
No 11
>cd00201 WW Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs.
Probab=29.26 E-value=52 Score=13.25 Aligned_cols=12 Identities=25% Similarity=0.606 Sum_probs=9.0
Q ss_pred eeEEEeCCCCce
Q psy13436 28 HRYYFDTKTLTC 39 (67)
Q Consensus 28 ~~w~yn~~~~~C 39 (67)
..||||..+++-
T Consensus 13 ~~yy~n~~t~~s 24 (31)
T cd00201 13 RVYYYNHNTKET 24 (31)
T ss_pred CEEEEECCCCCE
Confidence 578999887753
No 12
>smart00456 WW Domain with 2 conserved Trp (W) residues. Also known as the WWP or rsp5 domain. Binds proline-rich polypeptides.
Probab=29.07 E-value=55 Score=13.45 Aligned_cols=12 Identities=25% Similarity=0.648 Sum_probs=9.1
Q ss_pred eeEEEeCCCCce
Q psy13436 28 HRYYFDTKTLTC 39 (67)
Q Consensus 28 ~~w~yn~~~~~C 39 (67)
..||||..++.-
T Consensus 14 ~~yy~n~~t~~s 25 (32)
T smart00456 14 RPYYYNHETKET 25 (32)
T ss_pred CEEEEECCCCCE
Confidence 668899888763
No 13
>cd01099 PAN_AP_HGF Subfamily of PAN/APPLE-like domains; present in N-terminal (N) domains of plasminogen/hepatocyte growth factor proteins, and various proteins found in Bilateria, such as leech anti-platelet proteins. PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions.
Probab=28.73 E-value=43 Score=17.19 Aligned_cols=12 Identities=25% Similarity=0.786 Sum_probs=10.4
Q ss_pred CCHHHHHHhccC
Q psy13436 55 VKRKDCERQCAK 66 (67)
Q Consensus 55 ~t~~~C~~~C~~ 66 (67)
.|.++|...|..
T Consensus 25 ~s~~~C~~~C~~ 36 (80)
T cd01099 25 ASLEECLRKCLE 36 (80)
T ss_pred CCHHHHHHHhCC
Confidence 799999999964
No 14
>PF12904 Collagen_bind_2: Putative collagen-binding domain of a collagenase ; InterPro: IPR024749 This domain is likely to be the collagen-binding domain of a family of bacterial collagenase enzymes. The structure of one family member, Q8A905 from SWISSPROT, has been characterised. The domain occurs in the C-terminal region of the protein.; PDB: 3KZS_D.
Probab=28.63 E-value=55 Score=17.82 Aligned_cols=16 Identities=25% Similarity=0.478 Sum_probs=12.0
Q ss_pred CeeeEEEeCCCCceeE
Q psy13436 26 SLHRYYFDTKTLTCTS 41 (67)
Q Consensus 26 ~~~~w~yn~~~~~C~~ 41 (67)
....|+||+.+++=..
T Consensus 48 ~~~a~WfdPR~G~~~~ 63 (93)
T PF12904_consen 48 KVKAWWFDPRTGKYTY 63 (93)
T ss_dssp EEEEEEEETTT-BEEE
T ss_pred ceeEEEEcCCCCCEEE
Confidence 3578999999988664
No 15
>PF08276 PAN_2: PAN-like domain; InterPro: IPR013227 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions []. These domains contain a hair-pin loop like structure, similar to knottins, but the pattern of disulphide bonds differs
Probab=28.50 E-value=48 Score=16.41 Aligned_cols=12 Identities=33% Similarity=0.922 Sum_probs=10.4
Q ss_pred CCHHHHHHhccC
Q psy13436 55 VKRKDCERQCAK 66 (67)
Q Consensus 55 ~t~~~C~~~C~~ 66 (67)
.+.++|+..|..
T Consensus 27 ~s~~~C~~~Cl~ 38 (66)
T PF08276_consen 27 VSLEECEKACLS 38 (66)
T ss_pred CCHHHHHhhcCC
Confidence 799999999964
No 16
>PF01607 CBM_14: Chitin binding Peritrophin-A domain; InterPro: IPR002557 This entry represents a chitin binding domain []. It is found in (amongst others) the Peritrophin-A chitin binding proteins, particularly the peritrophic matrix proteins of insects and animal chitinases [, , ]. Copies of the domain are also found in some baculoviruses. It is an extracellular domain that contains six conserved cysteines that probably form three disulphide bridges. Chitin binding has been demonstrated for a protein containing only two of these domains [].; GO: 0008061 chitin binding, 0006030 chitin metabolic process, 0005576 extracellular region; PDB: 1DQC_A.
Probab=28.21 E-value=48 Score=14.91 Aligned_cols=12 Identities=33% Similarity=0.869 Sum_probs=8.4
Q ss_pred EEEeCCCCceeE
Q psy13436 30 YYFDTKTLTCTS 41 (67)
Q Consensus 30 w~yn~~~~~C~~ 41 (67)
.+||..+++|..
T Consensus 35 ~~fd~~~~~C~~ 46 (53)
T PF01607_consen 35 LYFDPSSQRCVP 46 (53)
T ss_dssp -EE-TTTSSEE-
T ss_pred CEECcCcCEEcC
Confidence 589999999985
No 17
>smart00473 PAN_AP divergent subfamily of APPLE domains. Apple-like domains present in Plasminogen, C. elegans hypothetical ORFs and the extracellular portion of plant receptor-like protein kinases. Predicted to possess protein- and/or carbohydrate-binding functions.
Probab=27.49 E-value=48 Score=16.02 Aligned_cols=14 Identities=14% Similarity=0.638 Sum_probs=11.1
Q ss_pred CcCCHHHHHHhccC
Q psy13436 53 NFVKRKDCERQCAK 66 (67)
Q Consensus 53 ~F~t~~~C~~~C~~ 66 (67)
.-.+.++|+..|..
T Consensus 23 ~~~s~~~C~~~C~~ 36 (78)
T smart00473 23 SVASLEECASKCLN 36 (78)
T ss_pred cCCCHHHHHHHhCC
Confidence 35699999999964
No 18
>PF12989 DUF3873: Domain of unknown function, B. Theta Gene description (DUF3873); InterPro: IPR024356 This entry represents a family of uncharacterised proteins found primarily in Bacteroides species. The Bacteroides thetaiotaomicron gene appears to be upregulated in the presence of host or other bacterial species compared to growth in pure culture [, ].
Probab=27.01 E-value=43 Score=17.43 Aligned_cols=28 Identities=18% Similarity=0.305 Sum_probs=17.1
Q ss_pred CceeEEEecCcCCCCCCc----CCHHHHHHhccC
Q psy13436 37 LTCTSFIYGGCGGNANNF----VKRKDCERQCAK 66 (67)
Q Consensus 37 ~~C~~f~~~gC~gn~N~F----~t~~~C~~~C~~ 66 (67)
....+|.| |..++..| +|.+||++.+-.
T Consensus 32 ~~~~qYdY--r~~~GeLFscV~~tLeEcRr~rd~ 63 (69)
T PF12989_consen 32 VTKYQYDY--RHTDGELFSCVAPTLEECRRLRDE 63 (69)
T ss_pred ceEEEEee--ecCCccchhhhhccHHHHHHHHHH
Confidence 33444445 55566667 578888887643
No 19
>cd01098 PAN_AP_plant Plant PAN/APPLE-like domain; present in plant S-receptor protein kinases and secreted glycoproteins. PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions. S-receptor protein kinases and S-locus glycoproteins are involved in sporophytic self-incompatibility response in Brassica, one of probably many molecular mechanisms, by which hermaphrodite flowering plants avoid self-fertilization.
Probab=25.81 E-value=46 Score=16.55 Aligned_cols=13 Identities=15% Similarity=0.644 Sum_probs=10.1
Q ss_pred cCCHHHHHHhccC
Q psy13436 54 FVKRKDCERQCAK 66 (67)
Q Consensus 54 F~t~~~C~~~C~~ 66 (67)
-.+.++|++.|..
T Consensus 31 ~~s~~~C~~~Cl~ 43 (84)
T cd01098 31 AISLEECREACLS 43 (84)
T ss_pred cCCHHHHHHHHhc
Confidence 4588999999863
No 20
>PF14295 PAN_4: PAN domain; PDB: 2YIL_E 2YIP_C 2YIO_A.
Probab=25.43 E-value=42 Score=15.06 Aligned_cols=13 Identities=23% Similarity=0.682 Sum_probs=8.0
Q ss_pred CcCCHHHHHHhcc
Q psy13436 53 NFVKRKDCERQCA 65 (67)
Q Consensus 53 ~F~t~~~C~~~C~ 65 (67)
.-.|.++|...|.
T Consensus 14 ~~~s~~~C~~~C~ 26 (51)
T PF14295_consen 14 TASSPEECQAACA 26 (51)
T ss_dssp ----HHHHHHHHH
T ss_pred cCCCHHHHHHHcc
Confidence 5668999999885
No 21
>PF00355 Rieske: Rieske [2Fe-2S] domain; InterPro: IPR017941 There are multiple types of iron-sulphur clusters which are grouped into three main categories based on their atomic content: [2Fe-2S], [3Fe-4S], [4Fe-4S] (see PDOC00176 from PROSITEDOC), and other hybrid or mixed metal types. Two general types of [2Fe-2S] clusters are known and they differ in their coordinating residues. The ferredoxin-type [2Fe-2S] clusters are coordinated to the protein by four cysteine residues (see PDOC00175 from PROSITEDOC). The Rieske-type [2Fe-2S] cluster is coordinated to its protein by two cysteine residues and two histidine residues [, ]. The structure of several Rieske domains has been solved []. It contains three layers of antiparallel beta sheets forming two beta sandwiches. Both beta sandwiches share the central sheet 2. The metal-binding site is at the top of the beta sandwich formed by the sheets 2 and 3. The Fe1 iron of the Rieske cluster is coordinated by two cysteines while the other iron Fe2 is coordinated by two histidines. Two inorganic sulphide ions bridge the two iron ions forming a flat, rhombic cluster. Rieske-type iron-sulphur clusters are common to electron transfer chains of mitochondria and chloroplast and to non-haem iron oxygenase systems: The Rieske protein of the Ubiquinol-cytochrome c reductase (1.10.2.2 from EC) (also known as the bc1 complex or complex III), a complex of the electron transport chains of mitochondria and of some aerobic prokaryotes; it catalyses the oxidoreduction of ubiquinol and cytochrome c. The Rieske protein of chloroplastic plastoquinone-plastocyanin reductase (1.10.99.1 from EC) (also known as the b6f complex). It is functionally similar to the bc1 complex and catalyses the oxidoreduction of plastoquinol and cytochrome f. Bacterial naphthalene 1,2-dioxygenase subunit alpha, a component of the naphthalene dioxygenase (NDO) multicomponent enzyme system which catalyses the incorporation of both atoms of molecular oxygen into naphthalene to form cis-naphthalene dihydrodiol. Bacterial 3-phenylpropionate dioxygenase ferredoxin subunit. Bacterial toluene monoxygenase. Bacterial biphenyl dioxygenase. ; GO: 0016491 oxidoreductase activity, 0051537 2 iron, 2 sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 2XRX_A 2XR8_O 2XSH_G 2XSO_I 2YFI_C 2YFL_A 2YFJ_K 1G8J_D 1G8K_D 1NYK_B ....
Probab=24.40 E-value=85 Score=16.22 Aligned_cols=14 Identities=36% Similarity=0.669 Sum_probs=12.0
Q ss_pred eeEEEeCCCCceeE
Q psy13436 28 HRYYFDTKTLTCTS 41 (67)
Q Consensus 28 ~~w~yn~~~~~C~~ 41 (67)
-.|.||..+++|..
T Consensus 67 Hg~~Fd~~tG~~~~ 80 (97)
T PF00355_consen 67 HGWRFDLDTGECVG 80 (97)
T ss_dssp TTEEEETTTSBEEE
T ss_pred cCCEEeCCCceEec
Confidence 45999999999986
No 22
>cd01100 APPLE_Factor_XI_like Subfamily of PAN/APPLE-like domains; present in plasma prekallikrein/coagulation factor XI, microneme antigen proteins, and a few prokaryotic proteins. PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions.
Probab=23.06 E-value=68 Score=15.97 Aligned_cols=13 Identities=15% Similarity=0.575 Sum_probs=10.4
Q ss_pred cCCHHHHHHhccC
Q psy13436 54 FVKRKDCERQCAK 66 (67)
Q Consensus 54 F~t~~~C~~~C~~ 66 (67)
-.+.++|++.|..
T Consensus 24 ~~s~~~Cq~~C~~ 36 (73)
T cd01100 24 ASSAEQCQAACTA 36 (73)
T ss_pred cCCHHHHHHHcCC
Confidence 3589999999964
No 23
>PF12071 DUF3551: Protein of unknown function (DUF3551); InterPro: IPR021937 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 79 to 104 amino acids in length. This protein has a single completely conserved residue C that may be functionally important.
Probab=22.19 E-value=1.1e+02 Score=16.23 Aligned_cols=26 Identities=12% Similarity=0.107 Sum_probs=16.1
Q ss_pred CceeEEEecCcCCCCCCcCCHHHHHHh
Q psy13436 37 LTCTSFIYGGCGGNANNFVKRKDCERQ 63 (67)
Q Consensus 37 ~~C~~f~~~gC~gn~N~F~t~~~C~~~ 63 (67)
--|.+....|.. ....|.|.++|+..
T Consensus 31 p~Clq~~~~g~~-g~C~y~t~~QC~as 56 (82)
T PF12071_consen 31 PYCLQGGGWGYP-GDCSYSTYEQCRAS 56 (82)
T ss_pred cEEEeCCCCCCC-ccCCcCCHHHHHHH
Confidence 346663233433 35689999999854
No 24
>cd00129 PAN_APPLE PAN/APPLE-like domain; present in N-terminal (N) domains of plasminogen/ hepatocyte growth factor proteins, plasma prekallikrein/coagulation factor XI and microneme antigen proteins, plant receptor-like protein kinases, and various nematode and leech anti-platelet proteins. Common structural features include two disulfide bonds that link the alpha-helix to the central region of the protein. PAN domains have significant functional versatility, fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions.
Probab=20.29 E-value=64 Score=16.87 Aligned_cols=14 Identities=21% Similarity=0.643 Sum_probs=11.0
Q ss_pred CcCCHHHHHHhccC
Q psy13436 53 NFVKRKDCERQCAK 66 (67)
Q Consensus 53 ~F~t~~~C~~~C~~ 66 (67)
...+.++|...|..
T Consensus 23 ~~~s~~eC~~~Cl~ 36 (80)
T cd00129 23 KANTADECANRCEK 36 (80)
T ss_pred cccCHHHHHHHHhc
Confidence 34789999999864
Done!