RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13436
(67 letters)
>d1bunb_ g.8.1.1 (B:) beta2-bungarotoxin, neurotoxin chain
{Many-banded krait (Bungarus multicinctus) [TaxId:
8616]}
Length = 61
Score = 70.7 bits (173), Expect = 3e-19
Identities = 19/60 (31%), Positives = 28/60 (46%)
Query: 8 RKKEAKCHLKPVTGNCRASLHRYYFDTKTLTCTSFIYGGCGGNANNFVKRKDCERQCAKF 67
RK+ C P T C+ + +Y+ C F YGGC GN N+F C +C ++
Sbjct: 1 RKRHPDCDKPPDTKICQTVVRAFYYKPSAKRCVQFRYGGCNGNGNHFKSDHLCRCECLEY 60
>d1bika2 g.8.1.1 (A:79-134) Bikunin from inter-alpha-inhibitor
complex {Human (Homo sapiens) [TaxId: 9606]}
Length = 56
Score = 69.9 bits (171), Expect = 6e-19
Identities = 23/53 (43%), Positives = 27/53 (50%)
Query: 12 AKCHLKPVTGNCRASLHRYYFDTKTLTCTSFIYGGCGGNANNFVKRKDCERQC 64
A C+L V G CRA + + FD C F YGGC GN N F K+C C
Sbjct: 2 AACNLPIVRGPCRAFIQLWAFDAVKGKCVLFPYGGCQGNGNKFYSEKECREYC 54
>d1zr0b1 g.8.1.1 (B:1A-59) Tissue factor pathway inhibitor {Human
(Homo sapiens) [TaxId: 9606]}
Length = 63
Score = 69.6 bits (170), Expect = 1e-18
Identities = 26/58 (44%), Positives = 32/58 (55%)
Query: 9 KKEAKCHLKPVTGNCRASLHRYYFDTKTLTCTSFIYGGCGGNANNFVKRKDCERQCAK 66
C L G CRA L RYY+D T +C F+YGGC GNANNF + C+ C +
Sbjct: 4 NNAEICLLPLDYGPCRALLLRYYYDRYTQSCRQFLYGGCEGNANNFYTWEACDDACWR 61
>d1ktha_ g.8.1.1 (A:) Collagen type VI (domain C5 from alpha 3
chain) {Human (Homo sapiens) [TaxId: 9606]}
Length = 58
Score = 69.5 bits (170), Expect = 1e-18
Identities = 24/52 (46%), Positives = 32/52 (61%)
Query: 14 CHLKPVTGNCRASLHRYYFDTKTLTCTSFIYGGCGGNANNFVKRKDCERQCA 65
C L G CR + ++Y+D T +C F YGGCGGN N F +K+CE+ CA
Sbjct: 5 CKLPKDEGTCRDFILKWYYDPNTKSCARFWYGGCGGNENKFGSQKECEKVCA 56
>d1dtxa_ g.8.1.1 (A:) alpha-Dendrotoxin {Green mamba (Dendroaspis
angusticeps) [TaxId: 8618]}
Length = 59
Score = 69.1 bits (169), Expect = 1e-18
Identities = 18/55 (32%), Positives = 27/55 (49%)
Query: 10 KEAKCHLKPVTGNCRASLHRYYFDTKTLTCTSFIYGGCGGNANNFVKRKDCERQC 64
+ C L G C + +Y++ K C F + GCGGN+N F ++C R C
Sbjct: 3 RRKLCILHRNPGRCYDKIPAFYYNQKKKQCERFDWSGCGGNSNRFKTIEECRRTC 57
>d1irha_ g.8.1.1 (A:) Tissue factor pathway inhibitor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 61
Score = 68.3 bits (167), Expect = 3e-18
Identities = 22/53 (41%), Positives = 31/53 (58%)
Query: 14 CHLKPVTGNCRASLHRYYFDTKTLTCTSFIYGGCGGNANNFVKRKDCERQCAK 66
C G CRA+ +R+Y+++ C F Y GCGGN NNF +++C R C K
Sbjct: 8 CLTPADRGLCRANENRFYYNSVIGKCRPFKYSGCGGNENNFTSKQECLRACKK 60
>d1g6xa_ g.8.1.1 (A:) Pancreatic trypsin inhibitor, BPTI {Cow (Bos
taurus) [TaxId: 9913]}
Length = 58
Score = 68.3 bits (167), Expect = 3e-18
Identities = 22/52 (42%), Positives = 29/52 (55%)
Query: 14 CHLKPVTGNCRASLHRYYFDTKTLTCTSFIYGGCGGNANNFVKRKDCERQCA 65
C P G CRA + RY+++ K C +F+YGGC NNF +DC R C
Sbjct: 5 CLEPPYAGACRARIIRYFYNAKAGLCQTFVYGGCRAKRNNFKSAEDCLRTCG 56
>d1aapa_ g.8.1.1 (A:) Alzheimer's amyloid B-protein precursor,
APPI {Human (Homo sapiens) [TaxId: 9606]}
Length = 56
Score = 67.9 bits (166), Expect = 3e-18
Identities = 24/51 (47%), Positives = 28/51 (54%)
Query: 14 CHLKPVTGNCRASLHRYYFDTKTLTCTSFIYGGCGGNANNFVKRKDCERQC 64
C + TG CRA + R+YFD C F YGGCGGN NNF + C C
Sbjct: 5 CSEQAETGPCRAMISRWYFDVTEGKCAPFFYGGCGGNRNNFDTEEYCMAVC 55
>d1jc6a_ g.8.1.1 (A:) Venom basic protease inhibitor IX (VIIIb)
{Banded krait (Bungarus fasciatus) [TaxId: 8613]}
Length = 65
Score = 68.0 bits (166), Expect = 4e-18
Identities = 25/59 (42%), Positives = 35/59 (59%)
Query: 8 RKKEAKCHLKPVTGNCRASLHRYYFDTKTLTCTSFIYGGCGGNANNFVKRKDCERQCAK 66
+ + C+L P TG C A + +Y+++ C F YGGCGGNANNF +C+R CA
Sbjct: 1 KNRPTFCNLLPETGRCNALIPAFYYNSHLHKCQKFNYGGCGGNANNFKTIDECQRTCAA 59
>d1bf0a_ g.8.1.1 (A:) Calcicludine (cac) {Green mamba (Dendroaspis
angusticeps) [TaxId: 8618]}
Length = 60
Score = 68.0 bits (166), Expect = 4e-18
Identities = 17/51 (33%), Positives = 25/51 (49%)
Query: 14 CHLKPVTGNCRASLHRYYFDTKTLTCTSFIYGGCGGNANNFVKRKDCERQC 64
C G+C+ +YF C F++ GCGGNAN F +C ++C
Sbjct: 7 CKEPVRIGSCKKQFSSFYFKWTAKKCLPFLFSGCGGNANRFQTIGECRKKC 57
>d1tfxc_ g.8.1.1 (C:) Tissue factor pathway inhibitor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 58
Score = 67.9 bits (166), Expect = 4e-18
Identities = 21/53 (39%), Positives = 30/53 (56%)
Query: 14 CHLKPVTGNCRASLHRYYFDTKTLTCTSFIYGGCGGNANNFVKRKDCERQCAK 66
C L+ G CR + RY+++ +T C F YGGC GN NNF ++C+ C
Sbjct: 5 CFLEEDPGICRGYITRYFYNNQTKQCERFKYGGCLGNMNNFETLEECKNICED 57
>d1shpa_ g.8.1.1 (A:) Trypsin inhibitor {Sea anemone
(Stichodactyla helianthus) [TaxId: 6123]}
Length = 55
Score = 67.2 bits (164), Expect = 7e-18
Identities = 24/51 (47%), Positives = 28/51 (54%)
Query: 14 CHLKPVTGNCRASLHRYYFDTKTLTCTSFIYGGCGGNANNFVKRKDCERQC 64
C G C+ R+YFD++T CT FIYGGCGGN NNF C C
Sbjct: 3 CSEPKKVGRCKGYFPRFYFDSETGKCTPFIYGGCGGNGNNFETLHQCRAIC 53
>d1bika1 g.8.1.1 (A:25-78) Bikunin from inter-alpha-inhibitor
complex {Human (Homo sapiens) [TaxId: 9606]}
Length = 54
Score = 66.8 bits (163), Expect = 1e-17
Identities = 21/51 (41%), Positives = 29/51 (56%)
Query: 14 CHLKPVTGNCRASLHRYYFDTKTLTCTSFIYGGCGGNANNFVKRKDCERQC 64
C L G C RY+++ ++ C +F YGGC GN NNFV K+C + C
Sbjct: 2 CQLGYSAGPCMGMTSRYFYNGTSMACETFQYGGCMGNGNNFVTEKECLQTC 52
>d1dtka_ g.8.1.1 (A:) Dendrotoxin K {Black mamba (Dendroaspis
polylepis polylepis) [TaxId: 8620]}
Length = 57
Score = 66.8 bits (163), Expect = 1e-17
Identities = 20/51 (39%), Positives = 26/51 (50%)
Query: 14 CHLKPVTGNCRASLHRYYFDTKTLTCTSFIYGGCGGNANNFVKRKDCERQC 64
C L G C+ + +Y+ K C F Y GCGGNAN F ++C R C
Sbjct: 5 CKLPLRIGPCKRKIPSFYYKWKAKQCLPFDYSGCGGNANRFKTIEECRRTC 55
>d1d6za1 b.30.2.1 (A:301-724) Copper amine oxidase, domain 3
{Escherichia coli [TaxId: 562]}
Length = 424
Score = 28.0 bits (62), Expect = 0.072
Identities = 7/50 (14%), Positives = 11/50 (22%), Gaps = 8/50 (16%)
Query: 18 PVTGNCRASLHRYYFDTKTLTCTSFIYGGCGGNANNFVKRKDCERQCAKF 67
P + Y D+ G G + + KD
Sbjct: 68 PYGDPDIGWYFKAYLDS--------GDYGMGTLTSPIARGKDAPSNAVLL 109
>d2oqea1 b.30.2.1 (A:237-672) Copper amine oxidase, domain 3 {Yeast
(Hansenula polymorpha) [TaxId: 4905]}
Length = 436
Score = 24.5 bits (53), Expect = 1.0
Identities = 7/43 (16%), Positives = 9/43 (20%), Gaps = 8/43 (18%)
Query: 18 PVTGNCRASLHRYYFDTKTLTCTSFIYGGCGGNANNFVKRKDC 60
P ++ D G G N DC
Sbjct: 68 PYGSPEFPHQRKHALDIG--------EYGAGYMTNPLSLGCDC 102
>d1w6ga1 b.30.2.1 (A:212-628) Copper amine oxidase, domain 3
{Arthrobacter globiformis [TaxId: 1665]}
Length = 417
Score = 24.5 bits (53), Expect = 1.1
Identities = 10/50 (20%), Positives = 12/50 (24%), Gaps = 8/50 (16%)
Query: 18 PVTGNCRASLHRYYFDTKTLTCTSFIYGGCGGNANNFVKRKDCERQCAKF 67
P + YFDT G AN+ DC
Sbjct: 72 PYGDPSPIRSWQNYFDT--------GEYLVGQYANSLELGCDCLGDITYL 113
>d1zvfa1 b.82.1.20 (A:1-175) 3-hydroxyanthranilate-3,4-dioxygenase
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 23.2 bits (50), Expect = 3.0
Identities = 6/33 (18%), Positives = 12/33 (36%)
Query: 5 EEERKKEAKCHLKPVTGNCRASLHRYYFDTKTL 37
E++R ++ +CR +H L
Sbjct: 111 EQDRPGGENDKIRWYCSHCRQVVHESELQMLDL 143
>d1hyrc2 d.19.1.1 (C:0-180) Class I MHC homolog {Human (Homo
sapiens), Mic-a [TaxId: 9606]}
Length = 181
Score = 23.0 bits (49), Expect = 3.2
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 1 MKAKEEERKKEAKCHLKPVTGNCRASLHRY 30
++ +E + K H + +C L RY
Sbjct: 143 VRNFLKEDAMKTKTHYHAMHADCLQELRRY 172
>d1yfua1 b.82.1.20 (A:1-174) 3-hydroxyanthranilate-3,4-dioxygenase
{Ralstonia metallidurans [TaxId: 119219]}
Length = 174
Score = 22.8 bits (49), Expect = 3.7
Identities = 6/33 (18%), Positives = 11/33 (33%)
Query: 5 EEERKKEAKCHLKPVTGNCRASLHRYYFDTKTL 37
E +R + C +HR K++
Sbjct: 110 ERQRPAGMLDGFEWYCDACGHLVHRVEVQLKSI 142
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.135 0.435
Gapped
Lambda K H
0.267 0.0549 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 262,882
Number of extensions: 9996
Number of successful extensions: 61
Number of sequences better than 10.0: 1
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 26
Length of query: 67
Length of database: 2,407,596
Length adjustment: 36
Effective length of query: 31
Effective length of database: 1,913,316
Effective search space: 59312796
Effective search space used: 59312796
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.3 bits)