Query psy13437
Match_columns 80
No_of_seqs 144 out of 1007
Neff 7.8
Searched_HMMs 29240
Date Fri Aug 16 19:24:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13437.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13437hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b9w_A TDRD1, tudor domain-con 99.9 4.1E-28 1.4E-32 157.4 8.4 75 1-79 79-153 (201)
2 4b9x_A TDRD1, tudor domain-con 99.9 7E-28 2.4E-32 158.7 8.2 75 1-79 79-153 (226)
3 2diq_A Tudor and KH domain-con 99.9 1.5E-26 5.1E-31 138.3 2.8 63 1-64 46-108 (110)
4 2wac_A CG7008-PA; unknown func 99.9 8.8E-25 3E-29 141.9 6.7 75 1-79 65-139 (218)
5 3ntk_A Maternal protein tudor; 99.9 1E-24 3.4E-29 138.5 3.3 71 1-79 61-131 (169)
6 2hqx_A P100 CO-activator tudor 99.9 9.4E-24 3.2E-28 139.8 6.2 76 1-79 78-155 (246)
7 3fdr_A Tudor and KH domain-con 99.9 9.9E-24 3.4E-28 122.9 5.0 54 1-55 41-94 (94)
8 3bdl_A Staphylococcal nuclease 99.9 2.8E-23 9.6E-28 151.0 6.5 76 1-79 424-501 (570)
9 2eqk_A Tudor domain-containing 99.7 2.1E-18 7.1E-23 98.7 4.9 51 1-52 35-85 (85)
10 1mhn_A SurviVal motor neuron p 99.7 5.2E-18 1.8E-22 91.4 4.7 43 1-43 17-59 (59)
11 2d9t_A Tudor domain-containing 99.7 5.5E-18 1.9E-22 96.0 4.5 46 1-46 23-68 (78)
12 3pnw_C Tudor domain-containing 99.7 2.1E-17 7.2E-22 93.4 4.9 43 1-43 31-73 (77)
13 3s6w_A Tudor domain-containing 99.7 2E-17 6.7E-22 87.6 4.3 40 1-40 15-54 (54)
14 4a4f_A SurviVal of motor neuro 99.7 4.4E-17 1.5E-21 89.1 4.7 42 1-42 22-63 (64)
15 1g5v_A SurviVal motor neuron p 99.7 7.4E-17 2.5E-21 93.2 5.6 47 1-47 24-70 (88)
16 2equ_A PHD finger protein 20-l 99.3 2.4E-12 8.3E-17 72.0 5.2 45 1-47 22-66 (74)
17 2ldm_A Uncharacterized protein 98.8 1.3E-12 4.3E-17 74.2 0.0 42 1-44 19-60 (81)
18 3p8d_A Medulloblastoma antigen 98.7 3.4E-08 1.2E-12 54.1 5.0 41 1-43 19-59 (67)
19 3qii_A PHD finger protein 20; 98.7 4E-08 1.4E-12 56.0 5.0 42 1-44 34-75 (85)
20 2dig_A Lamin-B receptor; tudor 98.3 1.8E-06 6.1E-11 46.8 4.8 41 1-42 26-66 (68)
21 2l8d_A Lamin-B receptor; DNA b 98.1 1E-05 3.6E-10 43.6 5.3 40 1-41 23-62 (66)
22 2bud_A Males-absent on the fir 97.2 0.00086 3E-08 38.5 5.4 45 1-45 27-78 (92)
23 3h8z_A FragIle X mental retard 97.1 0.00066 2.3E-08 41.2 4.0 39 3-43 80-120 (128)
24 2ro0_A Histone acetyltransfera 96.2 0.0094 3.2E-07 34.1 4.6 38 1-38 35-76 (92)
25 2f5k_A MORF-related gene 15 is 95.9 0.013 4.5E-07 34.1 4.3 43 1-43 34-80 (102)
26 2eko_A Histone acetyltransfera 95.8 0.0094 3.2E-07 33.8 3.4 39 1-39 26-68 (87)
27 2rnz_A Histone acetyltransfera 95.8 0.016 5.6E-07 33.3 4.3 38 1-38 37-78 (94)
28 4hcz_A PHD finger protein 1; p 95.5 0.058 2E-06 28.3 5.3 39 1-40 16-54 (58)
29 2lcc_A AT-rich interactive dom 95.4 0.018 6.2E-07 31.7 3.4 42 2-43 22-67 (76)
30 1wgs_A MYST histone acetyltran 95.4 0.014 4.8E-07 35.4 3.1 38 1-38 25-68 (133)
31 3h8z_A FragIle X mental retard 95.2 0.035 1.2E-06 33.5 4.6 40 1-42 14-54 (128)
32 2eqj_A Metal-response element- 94.4 0.067 2.3E-06 28.8 3.9 37 1-38 26-62 (66)
33 2e5p_A Protein PHF1, PHD finge 93.5 0.13 4.6E-06 27.6 3.9 39 1-40 22-60 (68)
34 2lrq_A Protein MRG15, NUA4 com 91.4 0.026 8.9E-07 31.7 0.0 42 2-43 25-70 (85)
35 2e5q_A PHD finger protein 19; 92.2 0.24 8.2E-06 26.3 3.7 39 1-40 20-58 (63)
36 3dlm_A Histone-lysine N-methyl 92.1 0.36 1.2E-05 31.4 5.3 48 1-49 21-71 (213)
37 2m0o_A PHD finger protein 1; t 90.6 0.25 8.7E-06 27.3 2.9 37 1-38 39-75 (79)
38 2qqr_A JMJC domain-containing 89.8 0.85 2.9E-05 27.0 5.0 41 1-42 18-58 (118)
39 2g3r_A Tumor suppressor P53-bi 89.6 2.1 7.3E-05 25.5 6.8 38 2-41 19-59 (123)
40 3db3_A E3 ubiquitin-protein li 89.2 0.77 2.6E-05 28.6 4.6 39 2-40 25-83 (161)
41 3ask_A E3 ubiquitin-protein li 88.6 0.71 2.4E-05 30.3 4.4 41 1-41 16-67 (226)
42 3m9q_A Protein MALE-specific l 87.8 0.88 3E-05 26.3 4.0 42 2-43 37-87 (101)
43 2eqm_A PHD finger protein 20-l 86.4 2.4 8.1E-05 23.7 5.2 40 2-41 33-76 (88)
44 4eqp_A Thermonuclease; staphyl 84.8 4.5 0.00015 24.1 6.7 50 3-78 8-57 (143)
45 3m9p_A MALE-specific lethal 3 83.7 1.3 4.6E-05 25.9 3.4 42 2-43 37-87 (110)
46 1ssf_A Transformation related 83.5 1.5 5.3E-05 27.1 3.8 36 1-38 22-57 (156)
47 2xdp_A Lysine-specific demethy 82.4 1.2 4.1E-05 26.6 2.9 41 1-42 19-59 (123)
48 3dlm_A Histone-lysine N-methyl 78.1 4.2 0.00014 26.4 4.6 36 1-38 170-205 (213)
49 2xk0_A Polycomb protein PCL; t 77.0 2.9 9.9E-05 22.5 3.1 38 1-41 28-65 (69)
50 2k3y_A Chromatin modification- 75.8 3.4 0.00012 25.0 3.5 26 18-43 78-105 (136)
51 3d0f_A Penicillin-binding 1 tr 71.1 10 0.00035 21.2 4.7 37 2-41 34-70 (106)
52 3sd4_A PHD finger protein 20; 70.6 9.5 0.00032 19.9 4.4 27 2-28 26-52 (69)
53 2qqr_A JMJC domain-containing 69.2 7.7 0.00026 22.9 3.9 42 1-44 76-117 (118)
54 2xdp_A Lysine-specific demethy 67.8 6.6 0.00023 23.3 3.5 42 1-44 77-118 (123)
55 3pmi_A PWWP domain-containing 59.9 15 0.00052 22.0 4.0 22 5-26 21-42 (134)
56 3mea_A SAGA-associated factor 58.1 21 0.00073 22.4 4.7 41 2-42 62-104 (180)
57 1ri0_A Hepatoma-derived growth 57.7 7.1 0.00024 22.4 2.3 42 4-45 35-81 (110)
58 3p8b_B Transcription antitermi 57.4 18 0.00061 21.5 4.2 37 6-42 109-147 (152)
59 3bdl_A Staphylococcal nuclease 56.5 34 0.0012 24.7 6.1 28 50-78 231-268 (570)
60 2l89_A PWWP domain-containing 52.4 17 0.00059 20.6 3.3 40 4-43 21-70 (108)
61 1khc_A DNA cytosine-5 methyltr 51.9 17 0.00057 22.0 3.3 38 4-41 27-70 (147)
62 3mp6_A MBP, SGF29, maltose-bin 49.4 35 0.0012 23.9 5.2 42 1-42 404-451 (522)
63 2daq_A WHSC1L1 protein, isofor 46.3 14 0.00048 20.8 2.3 43 3-45 23-75 (110)
64 3llr_A DNA (cytosine-5)-methyl 43.8 26 0.00088 21.4 3.3 40 4-43 32-77 (154)
65 3ers_X TRNA-binding protein YG 43.4 32 0.0011 19.9 3.6 31 7-37 17-49 (118)
66 1kk8_A Myosin heavy chain, str 41.7 43 0.0015 25.7 4.8 38 2-41 41-78 (837)
67 1i84_S Smooth muscle myosin he 40.1 40 0.0014 26.6 4.6 38 2-41 41-78 (1184)
68 2eqs_A ATP-dependent RNA helic 39.3 48 0.0017 18.2 4.8 57 2-61 13-76 (103)
69 3oa6_A MALE-specific lethal 3 38.0 31 0.001 20.0 2.8 41 3-43 38-87 (110)
70 3mp6_A MBP, SGF29, maltose-bin 36.2 45 0.0015 23.3 4.0 40 3-43 473-515 (522)
71 4db1_A Myosin-7; S1DC, cardiac 35.9 53 0.0018 25.1 4.5 37 2-41 44-80 (783)
72 2y0n_E MALE-specific lethal 1 32.3 24 0.00084 18.0 1.6 41 31-71 9-55 (56)
73 2yrv_A AT-rich interactive dom 29.1 90 0.0031 18.3 4.0 43 2-44 26-74 (117)
74 3qby_A Hepatoma-derived growth 28.7 41 0.0014 18.5 2.3 41 4-44 21-66 (94)
75 3pfs_A Bromodomain and PHD fin 27.9 76 0.0026 19.5 3.6 26 16-41 94-120 (158)
76 3g48_A Chaperone CSAA; structu 27.3 70 0.0024 18.2 3.2 23 7-29 18-43 (112)
77 2ycu_A Non muscle myosin 2C, a 27.0 92 0.0032 24.3 4.6 38 2-41 18-55 (995)
78 1w9i_A Myosin II heavy chain; 26.4 91 0.0031 23.8 4.4 37 2-41 45-81 (770)
79 2hgo_A CASSIICOLIN; toxin, dis 26.2 10 0.00034 16.2 -0.5 9 21-29 4-12 (27)
80 1d2s_A SHBG, sex hormone-bindi 24.5 1E+02 0.0034 18.2 3.7 21 1-25 85-105 (170)
81 1jjg_A M156R; beta barrel, S1 23.5 40 0.0014 19.1 1.5 17 16-32 44-61 (102)
82 1h3z_A Hypothetical 62.8 kDa p 23.5 64 0.0022 18.0 2.5 28 16-43 46-73 (109)
83 2gfu_A DNA mismatch repair pro 23.0 48 0.0016 19.3 2.0 43 4-46 38-90 (134)
84 3bod_A Neurexin-1-alpha; neure 22.7 1.1E+02 0.0039 18.1 3.7 25 1-29 90-114 (178)
85 2wp8_J Exosome complex exonucl 22.7 1E+02 0.0035 24.1 4.1 35 2-38 887-921 (977)
86 1pyb_A Methionyl-tRNA syntheta 22.6 1.1E+02 0.0039 17.2 4.0 22 7-28 20-43 (111)
87 1w2f_A Inositol-trisphosphate 22.5 66 0.0022 21.4 2.7 30 4-33 210-239 (276)
88 3l42_A Peregrin; transcription 22.4 87 0.003 18.6 3.0 27 16-42 63-90 (130)
89 1pz7_A Agrin; structural prote 22.1 1.1E+02 0.0039 18.4 3.7 24 1-28 108-131 (204)
90 2fhd_A RAD9 homolog, DNA repai 21.9 1.5E+02 0.005 18.2 4.2 40 2-42 21-64 (153)
91 1f5f_A SHBG, sex hormone-bindi 21.7 1.2E+02 0.004 18.4 3.7 24 1-28 97-120 (205)
92 1fl0_A Endothelial-monocyte ac 21.6 1.1E+02 0.0036 18.9 3.4 23 7-29 11-35 (171)
93 2r16_A Neurexin-1-alpha; beta- 21.6 1.2E+02 0.0042 18.0 3.7 25 1-29 86-110 (182)
94 3sh4_A LG3 peptide; actin disa 21.4 1.2E+02 0.0042 18.2 3.7 25 1-29 94-118 (195)
95 2r1b_A Neurexin-1-beta, neurex 21.3 1.2E+02 0.0041 18.8 3.7 24 1-28 96-119 (220)
96 1mkh_A Metrs;, C-terminal doma 20.9 92 0.0031 17.5 2.8 22 7-28 16-39 (107)
97 1y96_A Gemin6, SIP2, GEM-assoc 20.8 84 0.0029 17.3 2.5 24 1-26 26-49 (86)
98 2a98_A Inositol 1,4,5-trisphos 20.7 71 0.0024 21.0 2.6 26 8-33 197-222 (259)
99 2h0b_A Neurexin-1-alpha; B-san 20.6 1.3E+02 0.0045 17.7 3.7 22 1-26 88-109 (184)
100 2aqx_A Predicted: inositol 1,4 20.3 74 0.0025 21.3 2.6 28 6-33 225-252 (289)
101 2lcd_A AT-rich interactive dom 25.4 22 0.00075 20.9 0.0 36 1-38 69-104 (118)
No 1
>4b9w_A TDRD1, tudor domain-containing protein 1; replication; HET: 2MR; 2.10A {Mus musculus}
Probab=99.95 E-value=4.1e-28 Score=157.42 Aligned_cols=75 Identities=32% Similarity=0.600 Sum_probs=69.7
Q ss_pred CCcEEEEEEEEEecCCCEEEEEEeeeCCeEEEccccccccchhhcCCCcceeEEEecceEeCCCCCCCCHHHHHhhhcc
Q psy13437 1 MGGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRADFLSLPFQAIECGLANIVPVGTDGEYNIILIVERIGK 79 (80)
Q Consensus 1 D~~wyRa~I~~~~~~~~~~~V~~vDyG~~~~v~~~~lr~l~~~f~~lP~qA~~c~L~~v~p~~~~~~Ws~~a~~~~f~~ 79 (80)
||.||||+|+++.+ ++.+.|+||||||++.|+.++||+||++|..+|+||++|+|+||+|. +..|+++| ++.|++
T Consensus 79 d~~wyRa~V~~~~~-~~~~~V~~vDyG~~~~v~~~~l~~l~~~f~~lP~qA~~c~L~~v~p~--~~~w~~ea-~~~f~~ 153 (201)
T 4b9w_A 79 DGNWYRALVKEILP-SGNVKVHFVDYGNVEEVTTDQLQAILPQFLLLPFQGMQCWLVDIQPP--NKHWTKEA-TARFQA 153 (201)
T ss_dssp TTEEEEEEEEEECT-TSCEEEEETTTCCEEEECGGGEEECCGGGGSSCBCCEEEEESSEECS--SSSCCHHH-HHHHHH
T ss_pred CCeEEEEEEEEECC-CCeEEEEEEccCCEEEEEHHHhccChHhHcccchhhEEEEEcCEEcC--CCCCCHHH-HHHHHH
Confidence 78999999999975 46799999999999999999999999999999999999999999998 57899999 888864
No 2
>4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus}
Probab=99.95 E-value=7e-28 Score=158.73 Aligned_cols=75 Identities=32% Similarity=0.600 Sum_probs=69.9
Q ss_pred CCcEEEEEEEEEecCCCEEEEEEeeeCCeEEEccccccccchhhcCCCcceeEEEecceEeCCCCCCCCHHHHHhhhcc
Q psy13437 1 MGGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRADFLSLPFQAIECGLANIVPVGTDGEYNIILIVERIGK 79 (80)
Q Consensus 1 D~~wyRa~I~~~~~~~~~~~V~~vDyG~~~~v~~~~lr~l~~~f~~lP~qA~~c~L~~v~p~~~~~~Ws~~a~~~~f~~ 79 (80)
||.||||+|+++.. ++.+.|+||||||++.|+.++||+||++|..+|+||++|+|+||+|. +..|+++| +++|++
T Consensus 79 d~~WyRa~V~~~~~-~~~~~V~~vDyGn~~~v~~~~l~~l~~~f~~lP~qA~~c~L~~v~p~--~~~w~~ea-~~~f~~ 153 (226)
T 4b9x_A 79 DGNWYRALVKEILP-SGNVKVHFVDYGNVEEVTTDQLQAILPQFLLLPFQGMQCWLVDIQPP--NKHWTKEA-TARFQA 153 (226)
T ss_dssp TTEEEEEEEEEECS-SSEEEEECTTTCCEEEEEGGGEECCCGGGSSSCBCCEEEEESSEECS--SSSCCHHH-HHHHHH
T ss_pred CCeEEEEEEEEECC-CCeEEEEEEecCCEEEEEHHHhccChHHHcccccceEEEEEecEECC--CCCCCHHH-HHHHHH
Confidence 78999999999975 46899999999999999999999999999999999999999999998 57899999 888864
No 3
>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=99.92 E-value=1.5e-26 Score=138.29 Aligned_cols=63 Identities=44% Similarity=0.753 Sum_probs=59.4
Q ss_pred CCcEEEEEEEEEecCCCEEEEEEeeeCCeEEEccccccccchhhcCCCcceeEEEecceEeCCC
Q psy13437 1 MGGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRADFLSLPFQAIECGLANIVPVGT 64 (80)
Q Consensus 1 D~~wyRa~I~~~~~~~~~~~V~~vDyG~~~~v~~~~lr~l~~~f~~lP~qA~~c~L~~v~p~~~ 64 (80)
||.||||+|+++.. ++.+.|+||||||++.|+.++||+||++|..+|+||++|+|++|+|..+
T Consensus 46 d~~wyRA~V~~~~~-~~~~~V~fvDyGn~e~v~~~~Lr~l~~~f~~lP~qA~~c~L~~v~p~~~ 108 (110)
T 2diq_A 46 NGSWYRARVLGTLE-NGNLDLYFVDFGDNGDCPLKDLRALRSDFLSLPFQAIECSLARIASGPS 108 (110)
T ss_dssp TCSCEEEEECCCCS-SSCEEEEETTTCCEEEECGGGCEECCHHHHSSCCSSCCSCSSCSCCSCC
T ss_pred CCeEEEEEEEEECC-CCeEEEEEEeCCCeEEEehHHhhcCcHHHhCCCcceEEEEECCeEECCC
Confidence 78999999999975 3689999999999999999999999999999999999999999999864
No 4
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster}
Probab=99.91 E-value=8.8e-25 Score=141.86 Aligned_cols=75 Identities=27% Similarity=0.334 Sum_probs=69.9
Q ss_pred CCcEEEEEEEEEecCCCEEEEEEeeeCCeEEEccccccccchhhcCCCcceeEEEecceEeCCCCCCCCHHHHHhhhcc
Q psy13437 1 MGGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRADFLSLPFQAIECGLANIVPVGTDGEYNIILIVERIGK 79 (80)
Q Consensus 1 D~~wyRa~I~~~~~~~~~~~V~~vDyG~~~~v~~~~lr~l~~~f~~lP~qA~~c~L~~v~p~~~~~~Ws~~a~~~~f~~ 79 (80)
||.||||+|+++.. +.+.|+|||||+++.|+.++||+||++|..+|+||++|+|+||+|+. +..|+++| .+.|++
T Consensus 65 d~~wyRa~V~~v~~--~~~~V~~vDyG~~~~v~~~~l~~l~~~~~~~p~~a~~~~Lagv~~p~-~~~w~~eA-~~~l~~ 139 (218)
T 2wac_A 65 DNQWYRAKVERVQG--SNATVLYIDYGNKETLPTNRLAALPPAFSSEKPYATEYALALVALPT-DNEDKEEA-LRAFSE 139 (218)
T ss_dssp TCCEEEEEEEEEET--TEEEEEETTTCCEEEEEGGGEEECCGGGSSSCCSEEEEEETTEECCS-SHHHHHHH-HHHHHH
T ss_pred CCeEEEEEEEEecC--CeEEEEEEecCCeEEEchHHcccCChhhccCCcceeEEEECCEECCC-CcchHHHH-HHHHHH
Confidence 68999999999984 79999999999999999999999999999999999999999999876 67899999 888764
No 5
>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A*
Probab=99.90 E-value=1e-24 Score=138.50 Aligned_cols=71 Identities=23% Similarity=0.331 Sum_probs=63.8
Q ss_pred CCcEEEEEEEEEecCCCEEEEEEeeeCCeEEEccccccccchhhcCCCcceeEEEecceEeCCCCCCCCHHHHHhhhcc
Q psy13437 1 MGGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRADFLSLPFQAIECGLANIVPVGTDGEYNIILIVERIGK 79 (80)
Q Consensus 1 D~~wyRa~I~~~~~~~~~~~V~~vDyG~~~~v~~~~lr~l~~~f~~lP~qA~~c~L~~v~p~~~~~~Ws~~a~~~~f~~ 79 (80)
||.||||+|+++..+ +.+.|+||||||++. .++||+||++|..+|+||++|+|+|++|+.. +.+| .+.|++
T Consensus 61 d~~wyRa~I~~~~~~-~~~~V~fvDyGn~~~--v~~lr~l~~~f~~lP~qA~~c~L~~v~~~~~----~~ea-~~~f~~ 131 (169)
T 3ntk_A 61 DEVFYRAQIRKVLDD-GKCEVHFIDFGNNAV--TQQFRQLPEELAKPARYSRHCELDASTISKC----DAAL-LQSFID 131 (169)
T ss_dssp TTEEEEEEEEEECST-TCEEEEETTTTEEEE--ESCEECCCHHHHSSCCSSEEEEECGGGSCHH----HHHH-HHHHHH
T ss_pred CCcEEEEEEEEECCC-CEEEEEEEecCCeEE--hhhhhccCHHHhhCCceeEEEEECCcCCCCC----hHHH-HHHHHH
Confidence 789999999999863 589999999999999 4899999999999999999999999998852 8888 888764
No 6
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B
Probab=99.89 E-value=9.4e-24 Score=139.83 Aligned_cols=76 Identities=29% Similarity=0.444 Sum_probs=47.0
Q ss_pred CCcEEEEEEEEEecCCCEEEEEEeeeCCeEEEccccccccchhhc--CCCcceeEEEecceEeCCCCCCCCHHHHHhhhc
Q psy13437 1 MGGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRADFL--SLPFQAIECGLANIVPVGTDGEYNIILIVERIG 78 (80)
Q Consensus 1 D~~wyRa~I~~~~~~~~~~~V~~vDyG~~~~v~~~~lr~l~~~f~--~lP~qA~~c~L~~v~p~~~~~~Ws~~a~~~~f~ 78 (80)
||.||||+|+++.. ++.+.|+||||||++.|+.++||+||++|. .+|+||++|+|++++|+. +..|..+| .+.|.
T Consensus 78 d~~wyRa~V~~~~~-~~~~~V~~vDyGn~~~v~~~~lr~l~~~~~~~~lp~~a~~~~L~~v~~p~-~~~~~~eA-~~~l~ 154 (246)
T 2hqx_A 78 DGEWYRARVEKVES-PAKIHVFYIDYGNREVLPSTRLGTLSPAFSTRVLPAQATEYAFAFIQVPQ-DDDARTDA-VDSVV 154 (246)
T ss_dssp TSCEEEEEEEEEEE-TTEEEEEETTTCCEEEECGGGEECCCGGGSTTTSCCCC---------------------------
T ss_pred CCCEEEEEEEEEcC-CCeEEEEEEeCCCeEEEeHHHhhcCCHhHcCCCCchhhhhhhhhceecCC-CccchHHH-HHHHH
Confidence 78999999999975 369999999999999999999999999998 689999999999999876 46799999 77765
Q ss_pred c
Q psy13437 79 K 79 (80)
Q Consensus 79 ~ 79 (80)
+
T Consensus 155 ~ 155 (246)
T 2hqx_A 155 R 155 (246)
T ss_dssp -
T ss_pred H
Confidence 3
No 7
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1
Probab=99.89 E-value=9.9e-24 Score=122.89 Aligned_cols=54 Identities=46% Similarity=0.830 Sum_probs=50.4
Q ss_pred CCcEEEEEEEEEecCCCEEEEEEeeeCCeEEEccccccccchhhcCCCcceeEEE
Q psy13437 1 MGGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRADFLSLPFQAIECG 55 (80)
Q Consensus 1 D~~wyRa~I~~~~~~~~~~~V~~vDyG~~~~v~~~~lr~l~~~f~~lP~qA~~c~ 55 (80)
||.||||+|+++.. ++.+.|+||||||++.|+.++||+||++|..+|+||++|+
T Consensus 41 d~~wyRA~I~~~~~-~~~~~V~fvDyGn~e~v~~~~lr~l~~~f~~lP~qA~~Cs 94 (94)
T 3fdr_A 41 NGSWYRARVLGTLE-NGNLDLYFVDFGDNGDCPLKDLRALRSDFLSLPFQAIECS 94 (94)
T ss_dssp TTEEEEEEEEEECT-TSCEEEEETTTCCEEEECGGGCEECCGGGGCSCCCCCCC-
T ss_pred CCeEEEEEEEEECC-CCeEEEEEEcCCCeEEEEHHHhhhcCHHHhcCCcceEEeC
Confidence 78999999999974 4689999999999999999999999999999999999995
No 8
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens}
Probab=99.88 E-value=2.8e-23 Score=151.04 Aligned_cols=76 Identities=28% Similarity=0.428 Sum_probs=70.5
Q ss_pred CCcEEEEEEEEEecCCCEEEEEEeeeCCeEEEccccccccchhhcCC--CcceeEEEecceEeCCCCCCCCHHHHHhhhc
Q psy13437 1 MGGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRADFLSL--PFQAIECGLANIVPVGTDGEYNIILIVERIG 78 (80)
Q Consensus 1 D~~wyRa~I~~~~~~~~~~~V~~vDyG~~~~v~~~~lr~l~~~f~~l--P~qA~~c~L~~v~p~~~~~~Ws~~a~~~~f~ 78 (80)
||.||||+|+++.. .+.+.|+||||||++.|+.++||+||++|..+ |+||++|+|++|+|+. +..|+++| ++.|+
T Consensus 424 d~~wyRa~I~~v~~-~~~~~V~fvDyGn~e~v~~~~Lr~l~~~f~~l~lP~qA~~c~La~v~pp~-~~~w~~ea-~~~f~ 500 (570)
T 3bdl_A 424 DGEWYRARVEKVES-PAKIHVFYIDYGNREVLPSTRLGTLSPAFSTRVLPAQATEYAFAFIQVPQ-DDDARTDA-VDSVV 500 (570)
T ss_dssp TSCEEEEEEEEEEE-TTEEEEEETTTCCEEEECGGGEECCCGGGSTTTSCCCCEEEEETTEECCS-SHHHHHHH-HHHHH
T ss_pred CCCEEEEEEEEEcC-CCeEEEEEEeCCCeEEEEHHHCccCCHHHhcCCCCcceEEEEECCeEcCC-CCCCcHHH-HHHHH
Confidence 78999999999986 47999999999999999999999999999976 9999999999999876 67999999 88886
Q ss_pred c
Q psy13437 79 K 79 (80)
Q Consensus 79 ~ 79 (80)
+
T Consensus 501 ~ 501 (570)
T 3bdl_A 501 R 501 (570)
T ss_dssp H
T ss_pred H
Confidence 4
No 9
>2eqk_A Tudor domain-containing protein 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=2.1e-18 Score=98.68 Aligned_cols=51 Identities=20% Similarity=0.331 Sum_probs=46.6
Q ss_pred CCcEEEEEEEEEecCCCEEEEEEeeeCCeEEEccccccccchhhcCCCccee
Q psy13437 1 MGGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRADFLSLPFQAI 52 (80)
Q Consensus 1 D~~wyRa~I~~~~~~~~~~~V~~vDyG~~~~v~~~~lr~l~~~f~~lP~qA~ 52 (80)
||+||||+|+++..+ +.++|+|+|||+.++|+.++||+|+++|..++.+|+
T Consensus 35 ~n~WyRakV~~v~~~-~~veVl~~DyGn~~~V~~~~LR~L~~~l~~~~~~~~ 85 (85)
T 2eqk_A 35 KNQWRRGQIIRMVTD-TLVEVLLYDVGVELVVNVDCLRKLEENLKTMGRLSL 85 (85)
T ss_dssp SCCEEEEEEEEECSS-SEEEEECTTTCCEEEEETTTEEECCHHHHTCSSCCC
T ss_pred CCeEEEEEEEEecCC-CeEEEEEEccCCEEEEEccccccCCHHHhhhhhccC
Confidence 579999999999974 679999999999999999999999999999988763
No 10
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=99.72 E-value=5.2e-18 Score=91.40 Aligned_cols=43 Identities=23% Similarity=0.353 Sum_probs=39.4
Q ss_pred CCcEEEEEEEEEecCCCEEEEEEeeeCCeEEEccccccccchh
Q psy13437 1 MGGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRAD 43 (80)
Q Consensus 1 D~~wyRa~I~~~~~~~~~~~V~~vDyG~~~~v~~~~lr~l~~~ 43 (80)
||.||||+|+++..+++.+.|+|+||||++.|+.++||+||++
T Consensus 17 Dg~wYrA~I~~i~~~~~~~~V~f~DYGn~e~v~~~~Lr~~~~~ 59 (59)
T 1mhn_A 17 DGCIYPATIASIDFKRETCVVVYTGYGNREEQNLSDLLSPICE 59 (59)
T ss_dssp TSCEEEEEEEEEETTTTEEEEEETTTTEEEEEEGGGCBCTTCC
T ss_pred CCCEEEEEEEEEcCCCCEEEEEEEcCCCEEEEcHHHeeCCCCC
Confidence 7999999999998655899999999999999999999999853
No 11
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1
Probab=99.72 E-value=5.5e-18 Score=95.95 Aligned_cols=46 Identities=24% Similarity=0.463 Sum_probs=41.9
Q ss_pred CCcEEEEEEEEEecCCCEEEEEEeeeCCeEEEccccccccchhhcC
Q psy13437 1 MGGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRADFLS 46 (80)
Q Consensus 1 D~~wyRa~I~~~~~~~~~~~V~~vDyG~~~~v~~~~lr~l~~~f~~ 46 (80)
||.||||+|+++..+++.+.|+||||||++.|+.++||+||+++.+
T Consensus 23 Dg~wYRA~I~~i~~~~~~~~V~fiDYGN~e~V~~~~Lr~l~~~ll~ 68 (78)
T 2d9t_A 23 DNKFYRAEVEALHSSGMTAVVKFTDYGNYEEVLLSNIKPVQTEAWV 68 (78)
T ss_dssp TCCEEEEEEEEECSSSSEEEEEETTTTEEEEEEGGGEEECCCCCCC
T ss_pred CCCEEEEEEEEEeCCCCEEEEEEEcCCCeEEEcHHHeEeCCHHHhh
Confidence 7899999999998645799999999999999999999999988754
No 12
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens}
Probab=99.69 E-value=2.1e-17 Score=93.38 Aligned_cols=43 Identities=28% Similarity=0.556 Sum_probs=37.6
Q ss_pred CCcEEEEEEEEEecCCCEEEEEEeeeCCeEEEccccccccchh
Q psy13437 1 MGGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRAD 43 (80)
Q Consensus 1 D~~wyRa~I~~~~~~~~~~~V~~vDyG~~~~v~~~~lr~l~~~ 43 (80)
||.||||+|+++..+++.+.|+|+||||++.|+.++||+||.+
T Consensus 31 Dg~wYRA~I~~i~~~~~~~~V~fvDYGN~e~V~~~~Lr~l~~~ 73 (77)
T 3pnw_C 31 DNKFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLSNIKPIQTE 73 (77)
T ss_dssp TTEEEEEEEEEECTTSSEEEEEETTTCCEEEEEGGGEECC---
T ss_pred CCCEEEEEEEEEeCCCCEEEEEEEcCCCeEEEeHHHeEECChh
Confidence 7999999999998655799999999999999999999999876
No 13
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=99.69 E-value=2e-17 Score=87.64 Aligned_cols=40 Identities=30% Similarity=0.558 Sum_probs=35.5
Q ss_pred CCcEEEEEEEEEecCCCEEEEEEeeeCCeEEEcccccccc
Q psy13437 1 MGGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQI 40 (80)
Q Consensus 1 D~~wyRa~I~~~~~~~~~~~V~~vDyG~~~~v~~~~lr~l 40 (80)
||.||||+|+++..+++.+.|+|+||||.+.|+.++||+|
T Consensus 15 Dg~wYrA~I~~i~~~~~~~~V~fvDYGn~e~v~~~~lrpi 54 (54)
T 3s6w_A 15 DNKFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLSNIKPI 54 (54)
T ss_dssp TTEEEEEEEEEC--CCSEEEEEETTTCCEEEEEGGGEECC
T ss_pred CCCEEEEEEEEEeCCCCEEEEEEEccCCeEEEeHHHEEEC
Confidence 7999999999997655789999999999999999999986
No 14
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=99.68 E-value=4.4e-17 Score=89.08 Aligned_cols=42 Identities=21% Similarity=0.376 Sum_probs=38.9
Q ss_pred CCcEEEEEEEEEecCCCEEEEEEeeeCCeEEEccccccccch
Q psy13437 1 MGGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRA 42 (80)
Q Consensus 1 D~~wyRa~I~~~~~~~~~~~V~~vDyG~~~~v~~~~lr~l~~ 42 (80)
||.||||+|+++..+++.+.|+|+||||.+.|+.++||+|++
T Consensus 22 Dg~wYrA~I~~v~~~~~~~~V~fvdYGn~e~V~~~~Lrpl~~ 63 (64)
T 4a4f_A 22 DGQCYEAEIEEIDEENGTAAITFAGYGNAEVTPLLNLKPVEE 63 (64)
T ss_dssp TSSEEEEEEEEEETTTTEEEEEETTTTEEEEEEGGGEECCSC
T ss_pred CCCEEEEEEEEEcCCCCEEEEEEEecCCEEEEeHHHcEeCCC
Confidence 799999999999965579999999999999999999999874
No 15
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=99.67 E-value=7.4e-17 Score=93.17 Aligned_cols=47 Identities=21% Similarity=0.301 Sum_probs=38.8
Q ss_pred CCcEEEEEEEEEecCCCEEEEEEeeeCCeEEEccccccccchhhcCC
Q psy13437 1 MGGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRADFLSL 47 (80)
Q Consensus 1 D~~wyRa~I~~~~~~~~~~~V~~vDyG~~~~v~~~~lr~l~~~f~~l 47 (80)
||.||||+|+++...++.+.|+|+||||.+.|+.++|++++..|..-
T Consensus 24 Dg~wYrA~I~~i~~~~~~~~V~fiDYGN~E~V~~~~Lrp~~~~~~~~ 70 (88)
T 1g5v_A 24 DGCIYPATIASIDFKRETCVVVYTGYGNREEQNLSDLLSPICEVANN 70 (88)
T ss_dssp TCCEEEEEEEEEETTTTEEEEEETTTCCEEEEEGGGCBCCC------
T ss_pred CCCEEEEEEEEecCCCCEEEEEEecCCCEEEEcHHHcccCChhhccc
Confidence 79999999999986458999999999999999999999999988653
No 16
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.32 E-value=2.4e-12 Score=72.02 Aligned_cols=45 Identities=18% Similarity=0.197 Sum_probs=40.3
Q ss_pred CCcEEEEEEEEEecCCCEEEEEEeeeCCeEEEccccccccchhhcCC
Q psy13437 1 MGGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRADFLSL 47 (80)
Q Consensus 1 D~~wyRa~I~~~~~~~~~~~V~~vDyG~~~~v~~~~lr~l~~~f~~l 47 (80)
||.||||+|+++..+ +.+.|.|+|| +.++|+.++|++||++....
T Consensus 22 Dg~~Y~A~I~~v~~~-~~~~V~f~Dy-n~e~v~~~~lrplp~~~k~~ 66 (74)
T 2equ_A 22 DCRYYPAKIEAINKE-GTFTVQFYDG-VIRCLKRMHIKAMPEDAKGQ 66 (74)
T ss_dssp SSSEEEEEEEEESTT-SSEEEEETTS-CEEEECGGGEECCCGGGTCC
T ss_pred CCCEEEEEEEEECCC-CEEEEEEecC-CeEEecHHHCeeCChhHhhc
Confidence 799999999999863 6899999999 99999999999999876543
No 17
>2ldm_A Uncharacterized protein; PHF20, tudor domain, epigenetics, methylated P53, transcript factor, transcription-protein binding complex; HET: M2L; NMR {Homo sapiens}
Probab=98.84 E-value=1.3e-12 Score=74.23 Aligned_cols=42 Identities=24% Similarity=0.375 Sum_probs=38.1
Q ss_pred CCcEEEEEEEEEecCCCEEEEEEeeeCCeEEEccccccccchhh
Q psy13437 1 MGGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRADF 44 (80)
Q Consensus 1 D~~wyRa~I~~~~~~~~~~~V~~vDyG~~~~v~~~~lr~l~~~f 44 (80)
||.||||+|+++.. ++.+.|+|+| ||.++|+.++|++||.+-
T Consensus 19 Dg~wY~A~I~~v~~-~~~y~V~F~D-Gn~E~V~~s~LrPl~~~~ 60 (81)
T 2ldm_A 19 DSRFYPAKVTAVNK-DGTYTVKFYD-GVVQTVKHIHVKAFSKDQ 60 (81)
Confidence 79999999999975 3689999999 999999999999999753
No 18
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=98.69 E-value=3.4e-08 Score=54.06 Aligned_cols=41 Identities=24% Similarity=0.344 Sum_probs=36.7
Q ss_pred CCcEEEEEEEEEecCCCEEEEEEeeeCCeEEEccccccccchh
Q psy13437 1 MGGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRAD 43 (80)
Q Consensus 1 D~~wyRa~I~~~~~~~~~~~V~~vDyG~~~~v~~~~lr~l~~~ 43 (80)
|+.||-|+|+++..+ +.+.|.|.| |++++|..++|+++|.+
T Consensus 19 D~~yYpA~I~si~~~-~~Y~V~F~d-G~~etvk~~~ikp~~~~ 59 (67)
T 3p8d_A 19 DCRFYPAKVTAVNKD-GTYTVKFYD-GVVQTVKHIHVKAFSKD 59 (67)
T ss_dssp TSCEEEEEEEEECTT-SEEEEEETT-SCEEEEEGGGEEECC--
T ss_pred CCCEeeEEEEEECCC-CeEEEEEeC-CceEEEeHHHcccCCcc
Confidence 789999999999964 689999999 99999999999999975
No 19
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=98.67 E-value=4e-08 Score=56.01 Aligned_cols=42 Identities=24% Similarity=0.316 Sum_probs=36.8
Q ss_pred CCcEEEEEEEEEecCCCEEEEEEeeeCCeEEEccccccccchhh
Q psy13437 1 MGGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRADF 44 (80)
Q Consensus 1 D~~wyRa~I~~~~~~~~~~~V~~vDyG~~~~v~~~~lr~l~~~f 44 (80)
|+.||-|+|+++..+ +.+.|.|-| |++++|...+|+++|.+-
T Consensus 34 D~~yYPAkI~sV~~~-~~YtV~F~D-G~~etvk~~~IKp~~~~~ 75 (85)
T 3qii_A 34 DCRFYPAKVTAVNKD-GTYTVKFYD-GVVQTVKHIHVKAFSKDQ 75 (85)
T ss_dssp TSCEEEEEEEEECTT-SEEEEEETT-SCEEEEEGGGEEECC---
T ss_pred CCCEeeEEEEEECCC-CeEEEEEeC-CCeEEecHHHcccCChhh
Confidence 789999999999974 689999999 999999999999999753
No 20
>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=98.27 E-value=1.8e-06 Score=46.80 Aligned_cols=41 Identities=22% Similarity=0.354 Sum_probs=38.4
Q ss_pred CCcEEEEEEEEEecCCCEEEEEEeeeCCeEEEccccccccch
Q psy13437 1 MGGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRA 42 (80)
Q Consensus 1 D~~wyRa~I~~~~~~~~~~~V~~vDyG~~~~v~~~~lr~l~~ 42 (80)
|+.+|-|+|+++...+..+.|.|-| |.++.+..++|+++|.
T Consensus 26 d~~yYparItSits~~~~Y~VkfKd-gT~e~L~~kDIKp~~~ 66 (68)
T 2dig_A 26 SSLYYEVEILSHDSTSQLYTVKYKD-GTELELKENDIKSGPS 66 (68)
T ss_dssp TCCEEEEEEEEEETTTTEEEEECTT-SCEEEEETTTEECCCC
T ss_pred CccceEEEEEEeccCCceEEEEecC-CCEEEechhccccCCC
Confidence 6789999999999877899999999 9999999999999985
No 21
>2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus}
Probab=98.07 E-value=1e-05 Score=43.64 Aligned_cols=40 Identities=25% Similarity=0.313 Sum_probs=37.1
Q ss_pred CCcEEEEEEEEEecCCCEEEEEEeeeCCeEEEccccccccc
Q psy13437 1 MGGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIR 41 (80)
Q Consensus 1 D~~wyRa~I~~~~~~~~~~~V~~vDyG~~~~v~~~~lr~l~ 41 (80)
|+.+|-|+|+++...+..+.|.|-| |.++.+..++|++++
T Consensus 23 d~~yYparI~Si~s~~~~Y~V~fKd-gT~e~L~~kDIkp~~ 62 (66)
T 2l8d_A 23 SVLYYEVQVTSYDDASHLYTVKYKD-GTELALKESDIRLQS 62 (66)
T ss_dssp SSCEEEEEEEEEETTTTEEEEEETT-SCEEEEEGGGEECSS
T ss_pred CccceEEEEEEeccCCceEEEEecC-CCEEeechhccccch
Confidence 6789999999999877899999999 999999999999883
No 22
>2bud_A Males-absent on the first protein; transferase, MOF, HAT, acetyl-transfer, dosage compensation complex, DCC, royal family; NMR {Drosophila melanogaster} SCOP: b.34.13.3
Probab=97.24 E-value=0.00086 Score=38.53 Aligned_cols=45 Identities=16% Similarity=0.110 Sum_probs=38.2
Q ss_pred CCcEEEEEEEEEecC-----CCEEEEEEeeeCCe--EEEccccccccchhhc
Q psy13437 1 MGGWFRAQILAVDVV-----NASCQVKFVDYGGY--LTLETSALRQIRADFL 45 (80)
Q Consensus 1 D~~wyRa~I~~~~~~-----~~~~~V~~vDyG~~--~~v~~~~lr~l~~~f~ 45 (80)
|+.||+|+|+++... ...+.|+|.+|-.. |.|+.++|....+++.
T Consensus 27 dg~~yeAeIl~ir~~~~~~~~~~YYVHY~g~NkRlDEWV~~~RL~~~~~~~g 78 (92)
T 2bud_A 27 DGTVHRGQVLQSRTTENAAAPDEYYVHYVGLNRRLDGWVGRHRISDNADDLG 78 (92)
T ss_dssp TSCEEEEEEEEEECTTTCSSCCEEEEECSSSCTTTCEEEETTTEESCHHHHH
T ss_pred CCCEEEEEEEEEeeccCCCCCcEEEEEeCCcccccccccCHHHhchhcccCC
Confidence 589999999998752 23899999999885 9999999999998853
No 23
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=97.08 E-value=0.00066 Score=41.16 Aligned_cols=39 Identities=13% Similarity=0.365 Sum_probs=33.4
Q ss_pred cEEEEEEEEEecCCCEEEEEEeeeCC--eEEEccccccccchh
Q psy13437 3 GWFRAQILAVDVVNASCQVKFVDYGG--YLTLETSALRQIRAD 43 (80)
Q Consensus 3 ~wyRa~I~~~~~~~~~~~V~~vDyG~--~~~v~~~~lr~l~~~ 43 (80)
.|+.|+|.++. ++.+.|.|.+|+. .|+|+.++||++++.
T Consensus 80 gWw~a~I~~~k--g~f~~V~y~~~~~~~~EiV~~~rlR~~n~~ 120 (128)
T 3h8z_A 80 GWWLARVRMMK--GDFYVIEYAACDATYNEIVTLERLRPVNPN 120 (128)
T ss_dssp EEEEEEEEEEE--TTEEEEEETTC----CEEECGGGEEECCCC
T ss_pred ccEEEEEEEee--CCEEEEEEcCCCCCcceEEehhheEeCCCC
Confidence 59999999998 5899999999998 699999999999863
No 24
>2ro0_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=96.21 E-value=0.0094 Score=34.11 Aligned_cols=38 Identities=18% Similarity=0.220 Sum_probs=32.2
Q ss_pred CCcEEEEEEEEEec--CCCEEEEEEeeeCCe--EEEcccccc
Q psy13437 1 MGGWFRAQILAVDV--VNASCQVKFVDYGGY--LTLETSALR 38 (80)
Q Consensus 1 D~~wyRa~I~~~~~--~~~~~~V~~vDyG~~--~~v~~~~lr 38 (80)
++.||.|+|+++.. +...+.|+|++|-.. |.|+.++|.
T Consensus 35 ~~~~y~AkIl~ir~~~~~~~YyVHY~g~NkRlDEWV~~~rl~ 76 (92)
T 2ro0_A 35 NDEERLAEILSINTRKAPPKFYVHYVNYNKRLDEWITTDRIN 76 (92)
T ss_dssp TTEEEEEEEEEEECSSSSCEEEEEETTSCTTSCEEEEGGGEE
T ss_pred CCEEEEEEEEEEEEcCCCcEEEEEeCCcCcccccccCHhHcc
Confidence 58899999999874 235899999999985 889999885
No 25
>2f5k_A MORF-related gene 15 isoform 1; beta barrel, gene regulation; 2.20A {Homo sapiens} SCOP: b.34.13.3 PDB: 2efi_A
Probab=95.90 E-value=0.013 Score=34.11 Aligned_cols=43 Identities=7% Similarity=0.051 Sum_probs=33.9
Q ss_pred CCcEEEEEEEEEecC--CCEEEEEEeeeCCe--EEEccccccccchh
Q psy13437 1 MGGWFRAQILAVDVV--NASCQVKFVDYGGY--LTLETSALRQIRAD 43 (80)
Q Consensus 1 D~~wyRa~I~~~~~~--~~~~~V~~vDyG~~--~~v~~~~lr~l~~~ 43 (80)
++.||.|+|+++... ...+.|+|.+|... |.|+.+.|+...++
T Consensus 34 ~~~~YeAkIl~v~~~~~~~~Y~VHY~GwNkR~DEWV~~~Rl~k~t~e 80 (102)
T 2f5k_A 34 GPLLYEAKCVKVAIKDKQVKYFIHYSGWNKNWDEWVPESRVLKYVDT 80 (102)
T ss_dssp SSSEEEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGEEESSHH
T ss_pred CCEEEEEEEEEEEEcCCCcEEEEEeCCcCCCceeeccHhhcccCCHH
Confidence 478999999998742 24789999999874 89999888866543
No 26
>2eko_A Histone acetyltransferase htatip; chromo domain, histone tail, chromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.84 E-value=0.0094 Score=33.78 Aligned_cols=39 Identities=21% Similarity=0.242 Sum_probs=32.3
Q ss_pred CCcEEEEEEEEEec--CCCEEEEEEeeeCCe--EEEccccccc
Q psy13437 1 MGGWFRAQILAVDV--VNASCQVKFVDYGGY--LTLETSALRQ 39 (80)
Q Consensus 1 D~~wyRa~I~~~~~--~~~~~~V~~vDyG~~--~~v~~~~lr~ 39 (80)
++.||.|+|+++.. ....+.|+|++|-.. |.|+.++|..
T Consensus 26 ~~~~y~AkIl~i~~~~~~~~YyVHY~g~NkRlDEWV~~~rl~~ 68 (87)
T 2eko_A 26 EDEWPLAEILSVKDISGRKLFYVHYIDFNRRLDEWVTHERLDL 68 (87)
T ss_dssp CEECCEEEEEEECCSSSCCCEEEEECSSCSCCCEEECTTTBCG
T ss_pred CCeEEEEEEEEEEEcCCCcEEEEEeCCCCcccccccCHhHccc
Confidence 46899999999875 235899999999885 8999999863
No 27
>2rnz_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=95.80 E-value=0.016 Score=33.27 Aligned_cols=38 Identities=18% Similarity=0.220 Sum_probs=32.0
Q ss_pred CCcEEEEEEEEEec--CCCEEEEEEeeeCCe--EEEcccccc
Q psy13437 1 MGGWFRAQILAVDV--VNASCQVKFVDYGGY--LTLETSALR 38 (80)
Q Consensus 1 D~~wyRa~I~~~~~--~~~~~~V~~vDyG~~--~~v~~~~lr 38 (80)
++.||.|+|+++.. +...+.|+|++|-.. |.|+.++|.
T Consensus 37 ~~~~yeAeIl~ir~~~g~~~YYVHY~g~NkRlDEWV~~~RI~ 78 (94)
T 2rnz_A 37 NDEERLAEILSINTRKAPPKFYVHYVNYNKRLDEWITTDRIN 78 (94)
T ss_dssp SSCEEEEEEEEEECSSSSCEEEEECTTSCSTTCEEEETTTBC
T ss_pred CCEEEEEEEEEEEEcCCCcEEEEEeCCcCcccccccCHHHcc
Confidence 58999999999874 235899999999874 899999985
No 28
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=95.47 E-value=0.058 Score=28.29 Aligned_cols=39 Identities=21% Similarity=0.266 Sum_probs=32.1
Q ss_pred CCcEEEEEEEEEecCCCEEEEEEeeeCCeEEEcccccccc
Q psy13437 1 MGGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQI 40 (80)
Q Consensus 1 D~~wyRa~I~~~~~~~~~~~V~~vDyG~~~~v~~~~lr~l 40 (80)
||.+|=|.|+++....+.+.|.|-| |....+.+++|..+
T Consensus 16 DG~fYlGtI~~V~~~~~~clV~F~D-~s~~W~~~kdi~~~ 54 (58)
T 4hcz_A 16 DGLLYLGTIKKVDSAREVCLVQFED-DSQFLVLWKDISPA 54 (58)
T ss_dssp TSCEEEEEEEEEETTTTEEEEEETT-SCEEEEEGGGEEEC
T ss_pred CCCEEeEEEEEEecCCCEEEEEEcC-CCeEEEEhHHcccc
Confidence 7999999999999866799999877 55667888887754
No 29
>2lcc_A AT-rich interactive domain-containing protein 4A; chromobarrel domain, RBBP1, transcription; NMR {Homo sapiens}
Probab=95.39 E-value=0.018 Score=31.73 Aligned_cols=42 Identities=7% Similarity=0.050 Sum_probs=32.6
Q ss_pred CcEEEEEEEEEecCC--CEEEEEEeeeCCe--EEEccccccccchh
Q psy13437 2 GGWFRAQILAVDVVN--ASCQVKFVDYGGY--LTLETSALRQIRAD 43 (80)
Q Consensus 2 ~~wyRa~I~~~~~~~--~~~~V~~vDyG~~--~~v~~~~lr~l~~~ 43 (80)
+.||.|+|+++...+ ..+.|+|.+|... |.|+.++|.....+
T Consensus 22 ~~~y~AkIl~i~~~~~~~~Y~VHY~gwnkr~DEWV~~~ri~~~~~~ 67 (76)
T 2lcc_A 22 QKIYEASIKSTEIDDGEVLYLVHYYGWNVRYDEWVKADRIIWPLDK 67 (76)
T ss_dssp EEEEEEEEEEEEEETTEEEEEEEETTSCCSSCEEEEGGGEECSSCS
T ss_pred CCEEEEEEEEEEccCCceEEEEEeCCcCCCceEecChhhccccccc
Confidence 589999999987532 2689999998874 88999988755443
No 30
>1wgs_A MYST histone acetyltransferase 1; tudor domain, MYST family, struct genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.34.13.3
Probab=95.35 E-value=0.014 Score=35.39 Aligned_cols=38 Identities=16% Similarity=0.301 Sum_probs=31.1
Q ss_pred CCcEEEEEEEEEec----CCCEEEEEEeeeCCe--EEEcccccc
Q psy13437 1 MGGWFRAQILAVDV----VNASCQVKFVDYGGY--LTLETSALR 38 (80)
Q Consensus 1 D~~wyRa~I~~~~~----~~~~~~V~~vDyG~~--~~v~~~~lr 38 (80)
|+.||.|+|+++.. +...+.|+|.+|-.. |.|+.+.|.
T Consensus 25 d~~~y~AkIl~i~~~~~~~~~~YyVHY~gwNkR~DEWV~~~ri~ 68 (133)
T 1wgs_A 25 DSTWHSAEVIQSRVNDQEGREEFYVHYVGFNRRLDEWVDKNRLA 68 (133)
T ss_dssp TTEEEEEEEEEEEEETTTTEEEEEEECTTTCSSCCEEECTTTSC
T ss_pred CCCEEEEEEEEEEeccCCCceEEEEeccCcCCCceeecChhhcc
Confidence 57999999999763 234789999988874 899999985
No 31
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=95.25 E-value=0.035 Score=33.51 Aligned_cols=40 Identities=13% Similarity=0.199 Sum_probs=31.6
Q ss_pred CCcEEEEEEEEEecCCCEEEEEEeee-CCeEEEccccccccch
Q psy13437 1 MGGWFRAQILAVDVVNASCQVKFVDY-GGYLTLETSALRQIRA 42 (80)
Q Consensus 1 D~~wyRa~I~~~~~~~~~~~V~~vDy-G~~~~v~~~~lr~l~~ 42 (80)
+|.||-|.|..+. .+.+.|.|-+- --.+.|+.+++|..|+
T Consensus 14 ~G~~y~a~V~~v~--~d~~~V~f~n~w~~~~~vp~~~vRlpP~ 54 (128)
T 3h8z_A 14 NGAFYKGFVKDVH--EDSVTIFFENNWQSERQIPFGDVRLPPP 54 (128)
T ss_dssp TSCEEEEEEEEEC--SSEEEEEETTCTTCCEEEEGGGEECCCC
T ss_pred CCCEEEEEEEEEe--CCcEEEEEccccCcceEechhhEEcCCC
Confidence 4899999999986 47888888542 3357999999998764
No 32
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=94.44 E-value=0.067 Score=28.78 Aligned_cols=37 Identities=16% Similarity=0.300 Sum_probs=29.2
Q ss_pred CCcEEEEEEEEEecCCCEEEEEEeeeCCeEEEcccccc
Q psy13437 1 MGGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALR 38 (80)
Q Consensus 1 D~~wyRa~I~~~~~~~~~~~V~~vDyG~~~~v~~~~lr 38 (80)
||.+|-|.|+++....+.+.|.|-| |....+.+++|.
T Consensus 26 DGl~Y~gtI~~V~~~~gtC~V~F~D-~s~~w~~~kdi~ 62 (66)
T 2eqj_A 26 DGLFYLGTIKKINILKQSCFIIFED-SSKSWVLWKDIQ 62 (66)
T ss_dssp TSCEEEEEEEEEETTTTEEEEEETT-TEEEEEETTTEE
T ss_pred cCcEEEeEEEEEccCCcEEEEEEcc-CCEEEEEeeccc
Confidence 7999999999999766899999877 444456666654
No 33
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.46 E-value=0.13 Score=27.62 Aligned_cols=39 Identities=21% Similarity=0.266 Sum_probs=30.1
Q ss_pred CCcEEEEEEEEEecCCCEEEEEEeeeCCeEEEcccccccc
Q psy13437 1 MGGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQI 40 (80)
Q Consensus 1 D~~wyRa~I~~~~~~~~~~~V~~vDyG~~~~v~~~~lr~l 40 (80)
||.+|-+.|.++......+.|.|-| +....+.+++|..+
T Consensus 22 DGlfYlGtV~kV~~~~~~ClV~FeD-~s~~wv~~kdi~~~ 60 (68)
T 2e5p_A 22 DGLLYLGTIKKVDSAREVCLVQFED-DSQFLVLWKDISPA 60 (68)
T ss_dssp TSSEEEEEEEEEETTTTEEEEEETT-TEEEEEETTTEECC
T ss_pred CCcEEEeEEEEEecCCcEEEEEEcc-CCeeeeeeeccccc
Confidence 7899999999999766788888876 33445777777654
No 34
>2lrq_A Protein MRG15, NUA4 complex subunit EAF3 homolog; epigenetics, LID complex, transcription; NMR {Drosophila melanogaster}
Probab=91.44 E-value=0.026 Score=31.73 Aligned_cols=42 Identities=7% Similarity=0.125 Sum_probs=33.1
Q ss_pred CcEEEEEEEEEec--CCCEEEEEEeeeCCe--EEEccccccccchh
Q psy13437 2 GGWFRAQILAVDV--VNASCQVKFVDYGGY--LTLETSALRQIRAD 43 (80)
Q Consensus 2 ~~wyRa~I~~~~~--~~~~~~V~~vDyG~~--~~v~~~~lr~l~~~ 43 (80)
+.||.|+|+++.. +...+.|+|.+|... |.|+.+.|....++
T Consensus 25 ~~~y~AkIl~i~~~~~~~~YyVHY~GwNkR~DEWV~~~Rl~k~t~e 70 (85)
T 2lrq_A 25 PLIYEAKVLKTKPDATPVEYYIHYAGWSKNWDEWVPENRVLKYNDD 70 (85)
Confidence 5799999999864 235799999999874 78998888766554
No 35
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.17 E-value=0.24 Score=26.25 Aligned_cols=39 Identities=21% Similarity=0.280 Sum_probs=30.5
Q ss_pred CCcEEEEEEEEEecCCCEEEEEEeeeCCeEEEcccccccc
Q psy13437 1 MGGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQI 40 (80)
Q Consensus 1 D~~wyRa~I~~~~~~~~~~~V~~vDyG~~~~v~~~~lr~l 40 (80)
||.+|=|.|.++......+.|.|-| +....+.+++|..+
T Consensus 20 DGlfYlgtV~kV~~~~~~ClV~FeD-~s~~wv~~kdi~~~ 58 (63)
T 2e5q_A 20 DGLYYLGKIKRVSSSKQSCLVTFED-NSKYWVLWKDIQHA 58 (63)
T ss_dssp TSCEEEEEECCCCSTTSEEEEEETT-SCEEEEEGGGEECC
T ss_pred CCCEEEEEEEEEecCCCEEEEEEcc-CceeEEEeeccccc
Confidence 7899999999998766788888877 34456777777654
No 36
>3dlm_A Histone-lysine N-methyltransferase setdb1; setdb1_human, structural genomics, structural genomics consortium, SGC, alternative splicing; 1.77A {Homo sapiens}
Probab=92.06 E-value=0.36 Score=31.42 Aligned_cols=48 Identities=17% Similarity=0.235 Sum_probs=32.9
Q ss_pred CCcEEEEEEEEEec--CCCEEEEEEeeeCCeEEEcccccccc-chhhcCCCc
Q psy13437 1 MGGWFRAQILAVDV--VNASCQVKFVDYGGYLTLETSALRQI-RADFLSLPF 49 (80)
Q Consensus 1 D~~wyRa~I~~~~~--~~~~~~V~~vDyG~~~~v~~~~lr~l-~~~f~~lP~ 49 (80)
++.||||+|+++.. .+..+.|.|-+=|. ..++.+.|..- .+....+|.
T Consensus 21 ~~~W~rg~v~~I~~~~~g~~YkVkF~~~g~-~ivs~~hiA~~~~p~~~~l~v 71 (213)
T 3dlm_A 21 TKTWHKGTLIAIQTVGPGKKYKVKFDNKGK-SLLSGNHIAYDYHPPADKLYV 71 (213)
T ss_dssp TSBEEEEEEEEEEEETTEEEEEEEESSSCE-EEECGGGEEESSCCCGGGCCT
T ss_pred CCcEEEEEEEEEEECCCCeEEEEEEcCCCC-EEeecceEEEecCCCccEEeE
Confidence 47899999999875 23468899887665 46777776652 334444553
No 37
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=90.57 E-value=0.25 Score=27.25 Aligned_cols=37 Identities=22% Similarity=0.289 Sum_probs=29.3
Q ss_pred CCcEEEEEEEEEecCCCEEEEEEeeeCCeEEEcccccc
Q psy13437 1 MGGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALR 38 (80)
Q Consensus 1 D~~wyRa~I~~~~~~~~~~~V~~vDyG~~~~v~~~~lr 38 (80)
||.+|=|.|+++....+.+.|.|-| |....+.+++|.
T Consensus 39 DGlfYLGTI~kV~~~~e~ClV~F~D-~S~~W~~~kdi~ 75 (79)
T 2m0o_A 39 DGLLYLGTIKKVDSAREVCLVQFED-DSQFLVLWKDIS 75 (79)
T ss_dssp TSCCCEEEEEEEETTTTEEEEEETT-SCEEEEETTTBC
T ss_pred CCCEEeEEEEEeccCCCEEEEEEcC-CCeEEEEeeccc
Confidence 7999999999999767788888866 445567777764
No 38
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=89.83 E-value=0.85 Score=27.05 Aligned_cols=41 Identities=12% Similarity=0.174 Sum_probs=32.0
Q ss_pred CCcEEEEEEEEEecCCCEEEEEEeeeCCeEEEccccccccch
Q psy13437 1 MGGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRA 42 (80)
Q Consensus 1 D~~wyRa~I~~~~~~~~~~~V~~vDyG~~~~v~~~~lr~l~~ 42 (80)
+|.+|||+|+++.. ...+.|.|-|=-.+..++.++|-..+.
T Consensus 18 ngryy~~~V~~~~~-~~~y~V~F~DgS~s~dl~peDIvs~dc 58 (118)
T 2qqr_A 18 NGRFYQCEVVRLTT-ETFYEVNFDDGSFSDNLYPEDIVSQDC 58 (118)
T ss_dssp TSSEEEEEEEEEEE-EEEEEEEETTSCEEEEECGGGBCSSCH
T ss_pred CCCEEeEEEEEEee-EEEEEEEcCCCCccCCCCHhhcccccc
Confidence 57899999999875 356778877766667888888877764
No 39
>2g3r_A Tumor suppressor P53-binding protein 1; tandem tudor domains, cell cycle-transcription complex; 1.25A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2ig0_A* 3lgf_A* 3lgl_A* 3lh0_A* 1xni_A
Probab=89.63 E-value=2.1 Score=25.49 Aligned_cols=38 Identities=16% Similarity=0.139 Sum_probs=30.3
Q ss_pred CcEEEEEEEEEecCCCEEEEEEeeeCCeEEEcccccc---ccc
Q psy13437 2 GGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALR---QIR 41 (80)
Q Consensus 2 ~~wyRa~I~~~~~~~~~~~V~~vDyG~~~~v~~~~lr---~l~ 41 (80)
+.||-++|++... ++.++|.| |-|....+..++|- +||
T Consensus 19 ~~yYpG~V~~~~~-~~ky~V~F-dDg~~~~v~~k~iiv~d~ip 59 (123)
T 2g3r_A 19 GYFYSGKITRDVG-AGKYKLLF-DDGYECDVLGKDILLCDPIP 59 (123)
T ss_dssp CCEEEEEEEEEEE-TTEEEEEE-TTSCEEEEEGGGEECCSSCC
T ss_pred CcCcccEEEEecc-CCeEEEEE-cCCCeeEeecceEEEecccC
Confidence 4799999998654 57899988 44888888888877 666
No 40
>3db3_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, tandem tudor domains, LI metal binding, DNA replication; HET: M3L; 2.40A {Homo sapiens} PDB: 3db4_A 2l3r_A*
Probab=89.20 E-value=0.77 Score=28.63 Aligned_cols=39 Identities=28% Similarity=0.518 Sum_probs=28.8
Q ss_pred CcEEEEEEEEEec------------------CCCEEEEEEeeeCCeEE--Ecccccccc
Q psy13437 2 GGWFRAQILAVDV------------------VNASCQVKFVDYGGYLT--LETSALRQI 40 (80)
Q Consensus 2 ~~wyRa~I~~~~~------------------~~~~~~V~~vDyG~~~~--v~~~~lr~l 40 (80)
|.|+-|+|+++.. ++-.++|.|=||..... ++..++|+=
T Consensus 25 GAWFEA~Iv~Vtr~~~~~~~p~~s~~~~~~~edviYhVkyddype~gvv~~~~~~iRpR 83 (161)
T 3db3_A 25 GAWFEAQVVRVTRKAPSRDEPCSSTSRPALEEDVIYHVKYDDYPENGVVQMNSRDVRAR 83 (161)
T ss_dssp CCEEEEEEEEEEEC-----------------CCEEEEEEESSCGGGCEEEEEGGGEECC
T ss_pred CcceEEEEEEEEecCCCCCCcccccccCCCcCceEEEEEeccCccCCeEecchhccccc
Confidence 8999999999764 12367899999977654 556677753
No 41
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=88.65 E-value=0.71 Score=30.25 Aligned_cols=41 Identities=29% Similarity=0.523 Sum_probs=28.9
Q ss_pred CCcEEEEEEEEEec---------CCCEEEEEEeeeCCeEE--Eccccccccc
Q psy13437 1 MGGWFRAQILAVDV---------VNASCQVKFVDYGGYLT--LETSALRQIR 41 (80)
Q Consensus 1 D~~wyRa~I~~~~~---------~~~~~~V~~vDyG~~~~--v~~~~lr~l~ 41 (80)
.|.||.|+|+++.+ ++-.+.|.|=||...+. +...++|+--
T Consensus 16 ~Gawfea~i~~v~~~~~~~~~~~d~~~y~v~y~~~~~~~~~~~~~~~irpra 67 (226)
T 3ask_A 16 MGAWFEAQVVRVTRKAPSRPALEEDVIYHVKYDDYPENGVVQMNSRDVRARA 67 (226)
T ss_dssp TCCEEEEEEEEEEECC------CCCEEEEEEETTCGGGCEEEEEGGGEEECC
T ss_pred CCceeEEEEEEEeccccccCCCCCceEEEeecccCcccCceecccccccccc
Confidence 48999999999875 22356788888866544 5566776543
No 42
>3m9q_A Protein MALE-specific lethal-3; chromodomain, MSL3, methyllysine recognition, aromatic CAGE, complex, transcription upregulation; 1.29A {Drosophila melanogaster} SCOP: b.34.13.0
Probab=87.76 E-value=0.88 Score=26.25 Aligned_cols=42 Identities=10% Similarity=0.112 Sum_probs=32.0
Q ss_pred CcEEEEEEEEEecC-------CCEEEEEEeeeCCe--EEEccccccccchh
Q psy13437 2 GGWFRAQILAVDVV-------NASCQVKFVDYGGY--LTLETSALRQIRAD 43 (80)
Q Consensus 2 ~~wyRa~I~~~~~~-------~~~~~V~~vDyG~~--~~v~~~~lr~l~~~ 43 (80)
+.+|.|+|+++... ...+.|+|..+... |.|+.+.|....++
T Consensus 37 ~~lYeAKIl~v~~~~~~~~~~~~~Y~VHY~GWn~rwDEWV~edRilk~~ee 87 (101)
T 3m9q_A 37 RVLYTSKVLNVFERRNEHGLRFYEYKIHFQGWRPSYDRAVRATVLLKDTEE 87 (101)
T ss_dssp CCEEEEEEEEEEEEECTTSCEEEEEEEEETTSCGGGCEEECGGGEEECCHH
T ss_pred CcceEeEEEEEEecCCccccCceEEEEEeCCCCcCceeecCHHHcccCCHH
Confidence 68999999998641 13678888877764 89999988876553
No 43
>2eqm_A PHD finger protein 20-like 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2jtf_A
Probab=86.37 E-value=2.4 Score=23.65 Aligned_cols=40 Identities=18% Similarity=0.297 Sum_probs=31.3
Q ss_pred CcEEEEEEEEEecCCCEEEEEEeeeCCe--EEEccc--cccccc
Q psy13437 2 GGWFRAQILAVDVVNASCQVKFVDYGGY--LTLETS--ALRQIR 41 (80)
Q Consensus 2 ~~wyRa~I~~~~~~~~~~~V~~vDyG~~--~~v~~~--~lr~l~ 41 (80)
+.||=|+|+.+...+..+.|+|-.+... +.++.+ +|+++-
T Consensus 33 ~~~~~a~i~~v~~~~~~v~VHfdGW~~~yDeWv~~dS~~I~P~g 76 (88)
T 2eqm_A 33 QKWYPSRIEKIDYEEGKMLVHFERWSHRYDEWIYWDSNRLRPLE 76 (88)
T ss_dssp SCEEEEEEEEEETTTTEEEEEESSSTTTEEEEEETTSCCEECCC
T ss_pred CCeeEEEEEEEeccCCEEEEEECCCCCcccEEeeCCCCcEeccc
Confidence 6899999998886568999999888874 667765 666553
No 44
>4eqp_A Thermonuclease; staphylococcal nuclease, hyperstable, PDTP, ionizable group, hydrolase; HET: THP; 1.35A {Staphylococcus aureus} PDB: 3ero_A* 2rbm_A* 3d8g_A* 3bdc_A* 4f8m_A* 3lx0_A* 3nqt_A* 3nk9_A* 3pmf_A* 3sr1_A* 3t13_A* 3mxp_A* 3r3o_A* 4df7_A* 3np8_A* 3nxw_A* 3oso_A* 3mz5_A* 3mhb_A* 3dhq_A* ...
Probab=84.84 E-value=4.5 Score=24.12 Aligned_cols=50 Identities=8% Similarity=-0.047 Sum_probs=33.3
Q ss_pred cEEEEEEEEEecCCCEEEEEEeeeCCeEEEccccccccchhhcCCCcceeEEEecceEeCCCCCCCCHHHHHhhhc
Q psy13437 3 GWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRADFLSLPFQAIECGLANIVPVGTDGEYNIILIVERIG 78 (80)
Q Consensus 3 ~wyRa~I~~~~~~~~~~~V~~vDyG~~~~v~~~~lr~l~~~f~~lP~qA~~c~L~~v~p~~~~~~Ws~~a~~~~f~ 78 (80)
.++.|+|+.+.+ ++++.|.. | -+.++++|+||..+.....|..+| .++++
T Consensus 8 ~~~~~~V~~V~D-GDTi~v~~-~-----------------------g~~~~VRL~gIDaPE~~q~~g~~A-~~~l~ 57 (143)
T 4eqp_A 8 HKEPATLIKAID-GDTVKLMY-K-----------------------GQPMTFRLLLVDTPEFNEKYGPEA-SAFTK 57 (143)
T ss_dssp CEEEEEEEEECS-SSEEEEEE-T-----------------------TEEEEEEETTEECCCTTSTTHHHH-HHHHH
T ss_pred ceeeEEEEEEEC-CCEEEEEe-C-----------------------CcEEEEEEEeecCCCcCCchHHHH-HHHHH
Confidence 467788888875 56776653 1 124788888888766566777777 66554
No 45
>3m9p_A MALE-specific lethal 3 homolog; chromodomain, MSL3, histone H4 tail, DNA backbone recognitio methyllysine recognition, H4K20ME1; HET: DNA MLZ; 2.35A {Homo sapiens} PDB: 3oa6_A* 3ob9_A*
Probab=83.72 E-value=1.3 Score=25.90 Aligned_cols=42 Identities=12% Similarity=0.075 Sum_probs=31.2
Q ss_pred CcEEEEEEEEEecC----C---CEEEEEEeeeCC--eEEEccccccccchh
Q psy13437 2 GGWFRAQILAVDVV----N---ASCQVKFVDYGG--YLTLETSALRQIRAD 43 (80)
Q Consensus 2 ~~wyRa~I~~~~~~----~---~~~~V~~vDyG~--~~~v~~~~lr~l~~~ 43 (80)
+.||-|+|+++... + ..+.|+|..+.. .+.|+.+.|....++
T Consensus 37 ~~lYeAKIl~v~~~~~~~g~~~~~Y~VHY~GWn~~wDEWV~e~rllk~~ee 87 (110)
T 3m9p_A 37 RVLYDAKIVDVIVGKDEKGRKIPEYLIHFNGWNRSWDRWAAEDHVLRDTDE 87 (110)
T ss_dssp CCEEEEEEEEEEEEECTTCCEEEEEEEEETTSCGGGCEEEEGGGEEECCHH
T ss_pred CCceeeEEEEEEeccCcccccceEEEEEECCCCcchhhccCHhhhhcCCHH
Confidence 48999999998641 1 367888887765 489999888876543
No 46
>1ssf_A Transformation related protein 53 binding protein 1; tudor domains, tandem, SH3-like fold, beta barrel, alpha- helix, cell cycle; NMR {Mus musculus} SCOP: b.34.9.1 b.34.9.1
Probab=83.48 E-value=1.5 Score=27.12 Aligned_cols=36 Identities=14% Similarity=0.099 Sum_probs=27.3
Q ss_pred CCcEEEEEEEEEecCCCEEEEEEeeeCCeEEEcccccc
Q psy13437 1 MGGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALR 38 (80)
Q Consensus 1 D~~wyRa~I~~~~~~~~~~~V~~vDyG~~~~v~~~~lr 38 (80)
++.||.|+|..... ++.+.|.| |-|....+...+|.
T Consensus 22 ~~yyYpG~V~~~~~-~~~Y~V~F-dDG~~k~v~~~div 57 (156)
T 1ssf_A 22 NGYFYSGKITRDVG-AGKYKLLF-DDGYECDVLGKDIL 57 (156)
T ss_dssp SSEEEEEEEEECCT-TTEEEEEC-TTSCEEEEETTTEE
T ss_pred CCcccccEEEEecc-CCEEEEEE-cCCCeeEeeccceE
Confidence 35677999999764 57888877 55888888866655
No 47
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=82.45 E-value=1.2 Score=26.60 Aligned_cols=41 Identities=12% Similarity=0.072 Sum_probs=31.1
Q ss_pred CCcEEEEEEEEEecCCCEEEEEEeeeCCeEEEccccccccch
Q psy13437 1 MGGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRA 42 (80)
Q Consensus 1 D~~wyRa~I~~~~~~~~~~~V~~vDyG~~~~v~~~~lr~l~~ 42 (80)
+|.+|+|+|+++.. ...+.|.|-|=-.+..+..++|-..+.
T Consensus 19 ngryy~~~V~~~~~-~~~y~V~F~DgS~s~dl~PedIvs~dc 59 (123)
T 2xdp_A 19 NTRYYSCRVMAVTS-QTFYEVMFDDGSFSRDTFPEDIVSRDC 59 (123)
T ss_dssp CCCCCCCEEEEEEE-EEEEEEEETTSCEEEEECGGGBCSSCH
T ss_pred CCcEEeEEEEEEee-EEEEEEEcCCCCccCCCCHhHcccccc
Confidence 57899999999985 356778877655567787888766664
No 48
>3dlm_A Histone-lysine N-methyltransferase setdb1; setdb1_human, structural genomics, structural genomics consortium, SGC, alternative splicing; 1.77A {Homo sapiens}
Probab=78.13 E-value=4.2 Score=26.39 Aligned_cols=36 Identities=19% Similarity=0.404 Sum_probs=30.9
Q ss_pred CCcEEEEEEEEEecCCCEEEEEEeeeCCeEEEcccccc
Q psy13437 1 MGGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALR 38 (80)
Q Consensus 1 D~~wyRa~I~~~~~~~~~~~V~~vDyG~~~~v~~~~lr 38 (80)
+|.|.+|+|++++ ..-+.|.|-+--.+|.+-.-+.|
T Consensus 170 ~g~w~~~~V~~vD--~SLv~v~f~~dkr~EWIYRGS~R 205 (213)
T 3dlm_A 170 EGTWWKSRVEEVD--GSLVRILFLDDKRCEWIYRGSTR 205 (213)
T ss_dssp TTEEEEEEEEEEE--TTEEEEEETTTTEEEEEETTCTT
T ss_pred cCcEEEEEEEEEc--ceeEEEEEcCCCeeEEEEcCCcc
Confidence 5899999999999 47999999988888888766655
No 49
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=76.96 E-value=2.9 Score=22.46 Aligned_cols=38 Identities=18% Similarity=0.292 Sum_probs=28.2
Q ss_pred CCcEEEEEEEEEecCCCEEEEEEeeeCCeEEEccccccccc
Q psy13437 1 MGGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIR 41 (80)
Q Consensus 1 D~~wyRa~I~~~~~~~~~~~V~~vDyG~~~~v~~~~lr~l~ 41 (80)
||.+|=+.|++.. .+.+.|.|-|- ....+.+++|+.|-
T Consensus 28 DG~fYLGtIVd~~--~~~ClV~FeD~-S~~Wv~~kdi~kl~ 65 (69)
T 2xk0_A 28 DGRFYLGTIIDQT--SDQYLIRFDDQ-SEQWCEPDKLRKLG 65 (69)
T ss_dssp TSCEEEEEEEEEC--SSCEEEEETTC-CEEEECTTTEECSS
T ss_pred CCCEEEEEEEecC--CceEEEEecCC-cceeeeHHHHHhhc
Confidence 7999999997765 46788888763 23467788887764
No 50
>2k3y_A Chromatin modification-related protein EAF3; dimethylated histone H3K36, EAF3-H3K36ME2 fusion, chromo barrel domain, histone deacetylase; HET: M2L; NMR {Saccharomyces cerevisiae}
Probab=75.77 E-value=3.4 Score=24.99 Aligned_cols=26 Identities=8% Similarity=0.130 Sum_probs=20.6
Q ss_pred EEEEEEeeeCCe--EEEccccccccchh
Q psy13437 18 SCQVKFVDYGGY--LTLETSALRQIRAD 43 (80)
Q Consensus 18 ~~~V~~vDyG~~--~~v~~~~lr~l~~~ 43 (80)
.+.|+|..+-.. |.|+.+.|+...++
T Consensus 78 ~Y~VHY~GWn~rwDEWV~~dRil~~~ee 105 (136)
T 2k3y_A 78 SFFIHYQGWKSSWDEWVGYDRIRAYNEE 105 (136)
T ss_dssp EEEECCTTSCGGGCEEEETTTEEESCHH
T ss_pred eEEEEeCCcCCcceeeecHhhhhhCCHh
Confidence 678888877664 89999999987764
No 51
>3d0f_A Penicillin-binding 1 transmembrane protein MRCA; BIG_1156.2, STR genomics, PSI-2, protein structure initiative; 1.64A {Nitrosomonas europaea atcc 19718}
Probab=71.06 E-value=10 Score=21.21 Aligned_cols=37 Identities=11% Similarity=0.182 Sum_probs=29.3
Q ss_pred CcEEEEEEEEEecCCCEEEEEEeeeCCeEEEccccccccc
Q psy13437 2 GGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIR 41 (80)
Q Consensus 2 ~~wyRa~I~~~~~~~~~~~V~~vDyG~~~~v~~~~lr~l~ 41 (80)
+.|+-|.|+++.+ +.+.|.+-+ |....++.+.++--.
T Consensus 34 ~~~~~AvV~~v~~--~~~~v~~~~-g~~~~l~~~~~~WA~ 70 (106)
T 3d0f_A 34 DDILAAVVLSATP--GAVEAFRKN-GETIRITGDGLKAAH 70 (106)
T ss_dssp TTCEEEEEEEEET--TEEEEEETT-SCEEEECGGGGSTTG
T ss_pred CCeEEEEEEEeCC--CeEEEEEcC-CCeEEEcHHHChhhh
Confidence 5699999999984 678887765 667779999888654
No 52
>3sd4_A PHD finger protein 20; tudor domain, transcription; 1.93A {Homo sapiens} PDB: 3q1j_A
Probab=70.63 E-value=9.5 Score=19.91 Aligned_cols=27 Identities=19% Similarity=0.479 Sum_probs=20.7
Q ss_pred CcEEEEEEEEEecCCCEEEEEEeeeCC
Q psy13437 2 GGWFRAQILAVDVVNASCQVKFVDYGG 28 (80)
Q Consensus 2 ~~wyRa~I~~~~~~~~~~~V~~vDyG~ 28 (80)
+.||-|.|+++...+..+.|+|-.+..
T Consensus 26 ~p~~~AtV~~v~~~~~~~~VhfdGw~~ 52 (69)
T 3sd4_A 26 KNWYPAHIEDIDYEEGKVLIHFKRWNH 52 (69)
T ss_dssp SCEEEEEEEEEETTTTEEEEEETTSCG
T ss_pred CCccccEEEEEeccCCEEEEEeCCCCC
Confidence 568999999995446899999976543
No 53
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=69.16 E-value=7.7 Score=22.85 Aligned_cols=42 Identities=21% Similarity=0.339 Sum_probs=30.5
Q ss_pred CCcEEEEEEEEEecCCCEEEEEEeeeCCeEEEccccccccchhh
Q psy13437 1 MGGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRADF 44 (80)
Q Consensus 1 D~~wyRa~I~~~~~~~~~~~V~~vDyG~~~~v~~~~lr~l~~~f 44 (80)
||.-|.|...+... ...+.|.|=| |....+++++|+.+++++
T Consensus 76 DG~~y~a~f~g~~~-~~~Y~V~feD-gs~~~~kR~~iyt~~E~l 117 (118)
T 2qqr_A 76 DGQVYGAKFVASHP-IQMYQVEFED-GSQLVVKRDDVYTLDEEL 117 (118)
T ss_dssp TSCEEEEEEEEEEE-EEEEEEEETT-SCEEEECGGGEEETTSCC
T ss_pred CCCEeeeEEeceeE-EEEEEEEECC-CCEEEEcHHHeeccccCC
Confidence 56669999888653 2456666644 667888999999988753
No 54
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=67.79 E-value=6.6 Score=23.30 Aligned_cols=42 Identities=17% Similarity=0.403 Sum_probs=31.1
Q ss_pred CCcEEEEEEEEEecCCCEEEEEEeeeCCeEEEccccccccchhh
Q psy13437 1 MGGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRADF 44 (80)
Q Consensus 1 D~~wyRa~I~~~~~~~~~~~V~~vDyG~~~~v~~~~lr~l~~~f 44 (80)
||.-|.|...+... ...+.|.|=| |....+.+++|+.+.+++
T Consensus 77 DG~~y~a~f~g~~~-~~~YtV~FeD-gs~~~~kR~~iyt~~E~l 118 (123)
T 2xdp_A 77 DGKLYGAKYFGSNI-AHMYQVEFED-GSQIAMKREDIYTLDEEL 118 (123)
T ss_dssp TSCEEEEEEEEEEE-EEEEEEECTT-SCEEEEEGGGCCCSSSCC
T ss_pred CCCEEeEEEeeeee-EEEEEEEECC-CCeEEecHHHcccccccc
Confidence 68889999888753 2456666544 667888999999998854
No 55
>3pmi_A PWWP domain-containing protein MUM1; structural genomics consortium, SGC, protein binding, nucLeu; HET: UNL; 2.82A {Homo sapiens}
Probab=59.95 E-value=15 Score=22.03 Aligned_cols=22 Identities=14% Similarity=0.246 Sum_probs=18.0
Q ss_pred EEEEEEEEecCCCEEEEEEeee
Q psy13437 5 FRAQILAVDVVNASCQVKFVDY 26 (80)
Q Consensus 5 yRa~I~~~~~~~~~~~V~~vDy 26 (80)
.-|.|.++.....++.|.|||=
T Consensus 21 WPAVVKSV~r~ekkA~VL~Ie~ 42 (134)
T 3pmi_A 21 WPAVVKSVRQRDKKASVLYIEG 42 (134)
T ss_dssp EEEEEEEEEGGGTEEEEEECCS
T ss_pred cchheeeeeeccceEEEEEEeC
Confidence 4588899987668999999984
No 56
>3mea_A SAGA-associated factor 29 homolog; structural genomics consortium, SGC, nucleus, transcription, transcription regulation, chromosomal protein, DNA-binding; HET: M3L; 1.26A {Homo sapiens} PDB: 3meu_A* 3met_A* 3me9_A* 3mev_A* 3lx7_A 3mew_A
Probab=58.05 E-value=21 Score=22.40 Aligned_cols=41 Identities=17% Similarity=0.272 Sum_probs=32.8
Q ss_pred CcEEEEEEEEEecCCCEEEEEEeeeCCe--EEEccccccccch
Q psy13437 2 GGWFRAQILAVDVVNASCQVKFVDYGGY--LTLETSALRQIRA 42 (80)
Q Consensus 2 ~~wyRa~I~~~~~~~~~~~V~~vDyG~~--~~v~~~~lr~l~~ 42 (80)
+.|--|+|+++...++.+.|.=+|=... -.++.++|-+||.
T Consensus 62 ~~WILa~Vv~~~~~~~rYeV~D~d~eg~~~~~~s~~~IIPLP~ 104 (180)
T 3mea_A 62 EQWILAEVVSYSHATNKYEVDDIDEEGKERHTLSRRRVIPLPQ 104 (180)
T ss_dssp EEEEEEEEEEEETTTTEEEEEECCTTCCEEEEEEGGGEEECCS
T ss_pred ccEEEEEEEEEcCCCCEEEEecCCCCCceeEEeCHHHEEECCC
Confidence 5799999999886668999988875443 4688889999984
No 57
>1ri0_A Hepatoma-derived growth factor; HDGF, HATH domain, PWWP domain, heparin-binding, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.9.2 PDB: 2b8a_A 2nlu_A
Probab=57.69 E-value=7.1 Score=22.39 Aligned_cols=42 Identities=17% Similarity=0.020 Sum_probs=32.0
Q ss_pred EEEEEEEEEec-----CCCEEEEEEeeeCCeEEEccccccccchhhc
Q psy13437 4 WFRAQILAVDV-----VNASCQVKFVDYGGYLTLETSALRQIRADFL 45 (80)
Q Consensus 4 wyRa~I~~~~~-----~~~~~~V~~vDyG~~~~v~~~~lr~l~~~f~ 45 (80)
|.-|+|+++.. ..+.+.|+|..-..+..|+.++|.++.+...
T Consensus 35 ~WPa~V~~~p~~~~k~~~~~~~V~FFGt~~~awv~~~~l~pf~~~~~ 81 (110)
T 1ri0_A 35 HWPARIDEMPEAAVKSTANKYQVFFFGTHETAFLGPKDLFPYEESKE 81 (110)
T ss_dssp EEEEEEECCCSSSSCCCSSCEEEEETTTTEEEEECSTTEECHHHHHH
T ss_pred CCCEEEecccHhhcCCCCCEEEEEEecCCCEEEECHHHccchhhhHH
Confidence 67788887542 2368999999777778899999999986543
No 58
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=57.39 E-value=18 Score=21.50 Aligned_cols=37 Identities=22% Similarity=0.322 Sum_probs=29.5
Q ss_pred EEEEEEEecCCCEEEEEEeeeCCe--EEEccccccccch
Q psy13437 6 RAQILAVDVVNASCQVKFVDYGGY--LTLETSALRQIRA 42 (80)
Q Consensus 6 Ra~I~~~~~~~~~~~V~~vDyG~~--~~v~~~~lr~l~~ 42 (80)
.|+|.+++.+...+.|.+..+|.. ..++.+++..+..
T Consensus 109 ~g~V~~vd~~k~~v~V~v~~~gr~tpvel~~~~v~~i~~ 147 (152)
T 3p8b_B 109 KAKVVKIDESKDEVVVQFIDAIVPIPVTIKGDYVRLISK 147 (152)
T ss_dssp EEEEEEEETTTTEEEEEESSCSSCCEEEEEGGGEEEEEC
T ss_pred EEEEEEEeCCCCEEEEEEEecceeEEEEECHHHEEEecc
Confidence 588999987778999999999984 5677778777653
No 59
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens}
Probab=56.51 E-value=34 Score=24.65 Aligned_cols=28 Identities=14% Similarity=-0.134 Sum_probs=19.0
Q ss_pred ceeEEEecceEeCC----------CCCCCCHHHHHhhhc
Q psy13437 50 QAIECGLANIVPVG----------TDGEYNIILIVERIG 78 (80)
Q Consensus 50 qA~~c~L~~v~p~~----------~~~~Ws~~a~~~~f~ 78 (80)
+-++++|+||.-+. ....|..+| .++++
T Consensus 231 ~~~~vRL~GIdaPe~~~~~~~~~~~~~~~g~eA-~~~l~ 268 (570)
T 3bdl_A 231 CLITFLLAGIECPRGARNLPGLVQEGEPFSEEA-TLFTK 268 (570)
T ss_dssp EEEEEEESSEECCCCCEEETTEEECCCTTHHHH-HHHHH
T ss_pred cEEEEEEEEEECCCCCCCCCCCccccChHHHHH-HHHHH
Confidence 44678888886442 246789999 77664
No 60
>2l89_A PWWP domain-containing protein 1; histone binding, protein binding; NMR {Schizosaccharomyces pombe}
Probab=52.40 E-value=17 Score=20.58 Aligned_cols=40 Identities=15% Similarity=0.283 Sum_probs=30.5
Q ss_pred EEEEEEEEEec----------CCCEEEEEEeeeCCeEEEccccccccchh
Q psy13437 4 WFRAQILAVDV----------VNASCQVKFVDYGGYLTLETSALRQIRAD 43 (80)
Q Consensus 4 wyRa~I~~~~~----------~~~~~~V~~vDyG~~~~v~~~~lr~l~~~ 43 (80)
|.-|+|+.... ..+.+.|+|.+-+...-++.++|.++..+
T Consensus 21 ~WPa~V~~~~~~p~~v~~~~~~~~~~~V~FFg~~~~aWv~~~~l~p~~~~ 70 (108)
T 2l89_A 21 WWPALLLRRKETKDSLNTNSSFNVLYKVLFFPDFNFAWVKRNSVKPLLDS 70 (108)
T ss_dssp EEEEEEEEEEEEESSSCSSSCEEEEEEEEETTTTEEEEECGGGEEECCHH
T ss_pred CCceEecCcccCcHHHhhccCCCCeEEEEECCCCCEEEEchhhceeCCHH
Confidence 77889976321 12578999988777788999999999853
No 61
>1khc_A DNA cytosine-5 methyltransferase 3B2; five beta-sheets barrel followed by five-helix bundle; HET: DNA; 1.80A {Mus musculus} SCOP: b.34.9.2 PDB: 3flg_A* 3qkj_A*
Probab=51.91 E-value=17 Score=21.96 Aligned_cols=38 Identities=13% Similarity=0.342 Sum_probs=30.5
Q ss_pred EEEEEEEEEec------CCCEEEEEEeeeCCeEEEccccccccc
Q psy13437 4 WFRAQILAVDV------VNASCQVKFVDYGGYLTLETSALRQIR 41 (80)
Q Consensus 4 wyRa~I~~~~~------~~~~~~V~~vDyG~~~~v~~~~lr~l~ 41 (80)
|.-|+|++... ..+.+.|+|..-+.+..|..++|.++.
T Consensus 27 wWPa~V~~~~~~~~~~~~~~~~~V~FFG~~~~awv~~~~L~p~~ 70 (147)
T 1khc_A 27 WWPAMVVSWKATSKRQAMPGMRWVQWFGDGKFSEISADKLVALG 70 (147)
T ss_dssp EEEEEEECGGGTTSCCCCTTEEEEEETTTCCEEEEEGGGCEETT
T ss_pred CCCEEeccchhhhcccCCCCeEEEEEecCCCEEEEcHHHCccch
Confidence 77888886443 136899999988899999999999875
No 62
>3mp6_A MBP, SGF29, maltose-binding periplasmic protein, linker, SAGA associated factor 29; histone, tudor domain, histone binding protei; HET: MLY MAL; 1.48A {Escherichia coli} PDB: 3mp1_A* 3mp8_A*
Probab=49.41 E-value=35 Score=23.88 Aligned_cols=42 Identities=19% Similarity=0.208 Sum_probs=33.9
Q ss_pred CCcEEEEEEEEEecCCCEEEEEEe--eeC----CeEEEccccccccch
Q psy13437 1 MGGWFRAQILAVDVVNASCQVKFV--DYG----GYLTLETSALRQIRA 42 (80)
Q Consensus 1 D~~wyRa~I~~~~~~~~~~~V~~v--DyG----~~~~v~~~~lr~l~~ 42 (80)
++.|--|+|++....+++++|.=+ |-. ....++.+++-+||+
T Consensus 404 ~~~wi~~~~~~~~~~~~~y~v~d~~~~~~~~~~~~~~~~~~~~~~~p~ 451 (522)
T 3mp6_A 404 DGEWIQCEVLKVVADGTRFEVRDPEPDELGNSGKVYKCNRKELLLIPP 451 (522)
T ss_dssp -CCEEEEEEEEEETTTTEEEEEECSCBTTBTTCEEEEECGGGEEEECS
T ss_pred CCCEEEEEEEEEeCCCCEEEEeCCCCCCCCCCCeeEEccHHHEEECCC
Confidence 368999999999877788999888 544 356889999999984
No 63
>2daq_A WHSC1L1 protein, isoform long; PWWP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.2
Probab=46.28 E-value=14 Score=20.83 Aligned_cols=43 Identities=14% Similarity=0.094 Sum_probs=32.7
Q ss_pred cEEEEEEEEEe----------cCCCEEEEEEeeeCCeEEEccccccccchhhc
Q psy13437 3 GWFRAQILAVD----------VVNASCQVKFVDYGGYLTLETSALRQIRADFL 45 (80)
Q Consensus 3 ~wyRa~I~~~~----------~~~~~~~V~~vDyG~~~~v~~~~lr~l~~~f~ 45 (80)
-|.-|+|++.. ...+.+.|+|.+-.....|+.++|+++.+...
T Consensus 23 p~WPa~V~~~~~~p~~~~~~~~~~~~~~V~FFg~~~~awv~~~~l~p~~~~~~ 75 (110)
T 2daq_A 23 RWWPAEICNPRSVPLNIQGLKHDLGDFPVFFFGSHDYYWVHQGRVFPYVEGDK 75 (110)
T ss_dssp CEEEEEECCTTTSCHHHHTSCCCSSCEEEEETTTTEEEEECSSSSEECCSSCC
T ss_pred CCCceeeCChhhCCHHHhhccCCCCcEEEEEecCCCEEEEcHHHCcCcchhhH
Confidence 37788888652 12357999999888888999999998886543
No 64
>3llr_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase, methylysine binding, STR genomics consortium, SGC, alternative promoter usage; HET: DNA BTB; 2.30A {Homo sapiens} SCOP: b.34.9.0
Probab=43.79 E-value=26 Score=21.38 Aligned_cols=40 Identities=13% Similarity=0.244 Sum_probs=32.5
Q ss_pred EEEEEEEEEec------CCCEEEEEEeeeCCeEEEccccccccchh
Q psy13437 4 WFRAQILAVDV------VNASCQVKFVDYGGYLTLETSALRQIRAD 43 (80)
Q Consensus 4 wyRa~I~~~~~------~~~~~~V~~vDyG~~~~v~~~~lr~l~~~ 43 (80)
|.-|+|..... ..+.+.|+|..-+.+..|..++|.++.+.
T Consensus 32 wWPa~V~~~~~~~k~~~~~~~~~V~FFG~~~~awv~~~~L~pf~e~ 77 (154)
T 3llr_A 32 WWPGRIVSWWMTGRSRAAEGTRWVMWFGDGKFSVVCVEKLMPLSSF 77 (154)
T ss_dssp CEEEEEECGGGTTSCCCCTTEEEEEETTTCCEEEEEGGGEEEGGGH
T ss_pred CCCEEEecccccccccCCCCEEEEEEeCCCCEEEEcHHHCcchhhh
Confidence 67788887531 24689999999999999999999998764
No 65
>3ers_X TRNA-binding protein YGJH; oligonucleotide-oligosaccharide binding fold; 1.87A {Escherichia coli}
Probab=43.44 E-value=32 Score=19.93 Aligned_cols=31 Identities=19% Similarity=0.168 Sum_probs=22.0
Q ss_pred EEEEEEec--CCCEEEEEEeeeCCeEEEccccc
Q psy13437 7 AQILAVDV--VNASCQVKFVDYGGYLTLETSAL 37 (80)
Q Consensus 7 a~I~~~~~--~~~~~~V~~vDyG~~~~v~~~~l 37 (80)
|+|+++.+ +.++..+.-||+|.........+
T Consensus 17 G~I~~~e~hp~AdKL~~~~VD~G~~~~~iv~g~ 49 (118)
T 3ers_X 17 GKIVEVKRHENADKLYIVQVDVGQKTLQTVTSL 49 (118)
T ss_dssp EEEEEEECCTTCSSCEEEEEECSSSEEEEEECC
T ss_pred EEEEEEEEcCCCCCcEEEEEEcCCcEeeEEEEe
Confidence 67888764 34578999999999765444444
No 66
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=41.66 E-value=43 Score=25.72 Aligned_cols=38 Identities=18% Similarity=0.273 Sum_probs=31.5
Q ss_pred CcEEEEEEEEEecCCCEEEEEEeeeCCeEEEccccccccc
Q psy13437 2 GGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIR 41 (80)
Q Consensus 2 ~~wyRa~I~~~~~~~~~~~V~~vDyG~~~~v~~~~lr~l~ 41 (80)
..|-.|.|++.. ++.+.|...|-|....|+.+++.+..
T Consensus 41 ~~~~~~~v~~~~--~~~~~v~~~~~g~~~~v~~~~~~~~n 78 (837)
T 1kk8_A 41 EGFASAEIQSSK--GDEITVKIVADSSTRTVKKDDIQSMN 78 (837)
T ss_dssp TEEEEEEEEEEE--TTEEEEEETTTCCEEEEEGGGCEECC
T ss_pred CCeeEEEEEeec--CCeEEEEEcCCCceEEeeHHHccccC
Confidence 569999999875 57899999999989899888876654
No 67
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=40.12 E-value=40 Score=26.61 Aligned_cols=38 Identities=18% Similarity=0.308 Sum_probs=32.2
Q ss_pred CcEEEEEEEEEecCCCEEEEEEeeeCCeEEEccccccccc
Q psy13437 2 GGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIR 41 (80)
Q Consensus 2 ~~wyRa~I~~~~~~~~~~~V~~vDyG~~~~v~~~~lr~l~ 41 (80)
..|-.|.|++.. ++.+.|...|-|....|+.+++.+..
T Consensus 41 ~~~~~~~v~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~n 78 (1184)
T 1i84_S 41 HGFEAASIKEEK--GDEVTVELQENGKKVTLSKDDIQKMN 78 (1184)
T ss_dssp TSSEEEEEEEEE--TTEEEEEETTTCCEEEEETTSCEECC
T ss_pred CCeEEEEEEEec--CCeEEEEEcCCCcEEEeeHHHccCCC
Confidence 569999999887 57899999999999999988877664
No 68
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.32 E-value=48 Score=18.22 Aligned_cols=57 Identities=16% Similarity=0.206 Sum_probs=36.8
Q ss_pred CcEEEEEEEEEecCCCEEEEEEeee--CCeEEEcccccc---cc--chhhcCCCcceeEEEecceEe
Q psy13437 2 GGWFRAQILAVDVVNASCQVKFVDY--GGYLTLETSALR---QI--RADFLSLPFQAIECGLANIVP 61 (80)
Q Consensus 2 ~~wyRa~I~~~~~~~~~~~V~~vDy--G~~~~v~~~~lr---~l--~~~f~~lP~qA~~c~L~~v~p 61 (80)
|.-|.|+|.++.+ ..+.|.+-++ |....++.++|. .+ +.+.. -.-+-+++++..+.+
T Consensus 13 G~i~~G~V~~v~~--fG~FV~l~~~~~~~~Glvhisel~~~~~~~~~~~~~-~~Gd~V~VkV~~vd~ 76 (103)
T 2eqs_A 13 GDIYNGKVTSIMQ--FGCFVQLEGLRKRWEGLVHISELRREGRVANVADVV-SKGQRVKVKVLSFTG 76 (103)
T ss_dssp TCEEEEEEEEECS--SCEEEEECSSSSCCEEEECGGGTSSSSCCCCHHHHC-CTTCEEEEEEEEEET
T ss_pred CCEEEEEEEEEec--cEEEEEEcCCCCCeEEEEEHHHCCCCcccCCcccEe-CCCCEEEEEEEEEEC
Confidence 5679999999975 3455555554 667889988872 11 11222 257778888777653
No 69
>3oa6_A MALE-specific lethal 3 homolog; chromodomain, MSL3, histone H4 tail, DNA backbone recognitio methyllysine recognition, H4K20ME1; HET: DNA MLZ; 2.35A {Homo sapiens} PDB: 3ob9_A*
Probab=37.98 E-value=31 Score=20.01 Aligned_cols=41 Identities=12% Similarity=0.089 Sum_probs=29.8
Q ss_pred cEEEEEEEEEec--C--CC---EEEEEEeeeCCe--EEEccccccccchh
Q psy13437 3 GWFRAQILAVDV--V--NA---SCQVKFVDYGGY--LTLETSALRQIRAD 43 (80)
Q Consensus 3 ~wyRa~I~~~~~--~--~~---~~~V~~vDyG~~--~~v~~~~lr~l~~~ 43 (80)
.+|-|+|+++.. + +. .+.|+|--+... +.|+.+.|+...++
T Consensus 38 llYeAKIl~v~~~~~~~~~~~~~Y~VHY~GWn~~WDEWV~~drllk~nee 87 (110)
T 3oa6_A 38 VLYDAKIVDVIVGKDEKGRKIPEYLIHFNGWNRSWDRWAAEDHVLRDTDE 87 (110)
T ss_dssp CEEEEEEEEEEEEECTTCCEEEEEEEEETTSCGGGCEEEEGGGEEECCHH
T ss_pred ccEEEEEEEEEeccCCcCCcccEEEEEECCcCcchhhccChhhhhcCCHH
Confidence 479999998853 1 11 477777777764 88999998877654
No 70
>3mp6_A MBP, SGF29, maltose-binding periplasmic protein, linker, SAGA associated factor 29; histone, tudor domain, histone binding protei; HET: MLY MAL; 1.48A {Escherichia coli} PDB: 3mp1_A* 3mp8_A*
Probab=36.20 E-value=45 Score=23.34 Aligned_cols=40 Identities=8% Similarity=0.222 Sum_probs=26.3
Q ss_pred cEEEEEEEEEecCCCEEEEEEeeeC---CeEEEccccccccchh
Q psy13437 3 GWFRAQILAVDVVNASCQVKFVDYG---GYLTLETSALRQIRAD 43 (80)
Q Consensus 3 ~wyRa~I~~~~~~~~~~~V~~vDyG---~~~~v~~~~lr~l~~~ 43 (80)
.+|||.|.+... .+.+.|.|=|=- ....|+..=+-++|.-
T Consensus 473 ~fy~a~v~~~~~-~~~~~~~f~~~~~~~~~~~~~~~~v~~~~~~ 515 (522)
T 3mp6_A 473 TFYPAIVIGTKR-DGTCRLRFDGEEEVDKETEVTRRLVLPSPTA 515 (522)
T ss_dssp EEEEEEEEEECT-TSCEEEEETTC----CCEEECGGGEEECHHH
T ss_pred ceEeEEEecCCC-CCeEEEEecCCCCCCccccccceeEEecCch
Confidence 689999999765 467999998854 2234555544455543
No 71
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=35.90 E-value=53 Score=25.06 Aligned_cols=37 Identities=16% Similarity=0.373 Sum_probs=30.0
Q ss_pred CcEEEEEEEEEecCCCEEEEEEeeeCCeEEEccccccccc
Q psy13437 2 GGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIR 41 (80)
Q Consensus 2 ~~wyRa~I~~~~~~~~~~~V~~vDyG~~~~v~~~~lr~l~ 41 (80)
..|-.|.|++.. ++.+.|. .+-|....|+.+++.+..
T Consensus 44 ~~~~~~~v~~~~--~~~~~v~-~~~g~~~~v~~~~v~~~n 80 (783)
T 4db1_A 44 QEFVKAKIVSRE--GGKVTAE-TEYGKTVTVKEDQVMQQN 80 (783)
T ss_dssp SSEEEEEEEEEC--SSEEEEE-ETTTEEEEEEGGGCEECC
T ss_pred CCEEEEEEEEec--CCEEEEE-ECCCCEEeCCHHHcccCC
Confidence 579999999865 5788888 688998899888877664
No 72
>2y0n_E MALE-specific lethal 1 homolog; transcription, chromatin, X chromosome, MSL complex; 3.00A {Mus musculus}
Probab=32.34 E-value=24 Score=18.03 Aligned_cols=41 Identities=17% Similarity=0.099 Sum_probs=25.8
Q ss_pred EEccccccccchhh------cCCCcceeEEEecceEeCCCCCCCCHH
Q psy13437 31 TLETSALRQIRADF------LSLPFQAIECGLANIVPVGTDGEYNII 71 (80)
Q Consensus 31 ~v~~~~lr~l~~~f------~~lP~qA~~c~L~~v~p~~~~~~Ws~~ 71 (80)
.-+.+.+++.+++. -.+|.+|+-+-|-.+.+...+.-|..+
T Consensus 9 e~~isSfyP~~edIe~I~vt~~lPV~AFG~~lP~~~~s~FsLPW~~~ 55 (56)
T 2y0n_E 9 EPEVTSFFPEPDDVESLLITPFLPVVAFGRPLPKLAPQNFELPWLDE 55 (56)
T ss_dssp -CCCSCSCC-----CTTSBCCBCBCEETTEECBCCCCCCCCCTTC--
T ss_pred CCceeeccCCHHHccEEEeeCCcceeEcccccCCCCcccccCccccC
Confidence 34566777777753 347999999999888877777788754
No 73
>2yrv_A AT-rich interactive domain-containing protein 4A; ARID domain-containing protein 4A, retinoblastoma-binding protein 1, RBBP-1, structural genomics; NMR {Homo sapiens}
Probab=29.10 E-value=90 Score=18.25 Aligned_cols=43 Identities=9% Similarity=0.301 Sum_probs=33.3
Q ss_pred CcEEEEEEEEEecC------CCEEEEEEeeeCCeEEEccccccccchhh
Q psy13437 2 GGWFRAQILAVDVV------NASCQVKFVDYGGYLTLETSALRQIRADF 44 (80)
Q Consensus 2 ~~wyRa~I~~~~~~------~~~~~V~~vDyG~~~~v~~~~lr~l~~~f 44 (80)
+.||=|.|++-... .+.+.|.=.--|.+-.|+.++++.+....
T Consensus 26 ~~WfPALVVsPs~~d~v~vkKd~~LVRSFkDgKf~sV~rkdv~e~~~~~ 74 (117)
T 2yrv_A 26 TEWYPALVISPSCNDDITVKKDQCLVRSFIDSKFYSIARKDIKEVDILN 74 (117)
T ss_dssp SCEEEEEEECCSSCSSCCCCTTCEEEEESSSCCEEEECTTTEECCCSTT
T ss_pred CceeeeEEECCCCCCCeeeccceEEEEeeccCeEEEEEhHhhhhccccc
Confidence 57999999875431 25677887777999999999999987543
No 74
>3qby_A Hepatoma-derived growth factor-related protein 2; HDGF2, structural genomics consortium, SGC, protein binding; HET: M3L; 1.95A {Homo sapiens} SCOP: b.34.9.2 PDB: 3qj6_A* 3eae_A 1n27_A
Probab=28.65 E-value=41 Score=18.47 Aligned_cols=41 Identities=12% Similarity=-0.036 Sum_probs=31.1
Q ss_pred EEEEEEEEEec-----CCCEEEEEEeeeCCeEEEccccccccchhh
Q psy13437 4 WFRAQILAVDV-----VNASCQVKFVDYGGYLTLETSALRQIRADF 44 (80)
Q Consensus 4 wyRa~I~~~~~-----~~~~~~V~~vDyG~~~~v~~~~lr~l~~~f 44 (80)
|--|+|.+... ..+.+.|+|.--+.+..|+.++|.++.+.+
T Consensus 21 ~WPa~V~~~~~~~~k~~~~~~~V~FFGt~~~awv~~~~l~pf~~~~ 66 (94)
T 3qby_A 21 HWPARIDDIADGAVKPPPNKYPIFFFGTHETAFLGPKDLFPYDKCK 66 (94)
T ss_dssp CEEEEECCCCTTSBCCCTTCEEEEETTTCCEEEECGGGEEEHHHHH
T ss_pred CCCEEEeecccccccCCCCEEEEEEEcCCCcceEchhHeeEHHHHH
Confidence 55688877642 136789999877778899999999988643
No 75
>3pfs_A Bromodomain and PHD finger-containing protein 3; structural genomics, structural genomics consortium, SGC, PW domain, protein binding; 1.90A {Homo sapiens} PDB: 3lyi_A*
Probab=27.93 E-value=76 Score=19.47 Aligned_cols=26 Identities=15% Similarity=0.120 Sum_probs=22.1
Q ss_pred CCEEEEEEeee-CCeEEEccccccccc
Q psy13437 16 NASCQVKFVDY-GGYLTLETSALRQIR 41 (80)
Q Consensus 16 ~~~~~V~~vDy-G~~~~v~~~~lr~l~ 41 (80)
...+.|.|.|- .....|+.++|+++-
T Consensus 94 ~~~ylV~FFd~~~t~aWV~~~~L~Pl~ 120 (158)
T 3pfs_A 94 EKLFLVLFFDNKRTWQWLPRDKVLPLG 120 (158)
T ss_dssp SCEEEEEECSTTCCEEEEEGGGEEECS
T ss_pred CCEEEEEEcCCCCceEeeccccEeecC
Confidence 46789999996 578899999999885
No 76
>3g48_A Chaperone CSAA; structural genomics, niaid structural centers for infectious diseases, center for structural GENO infectious diseases; 1.50A {Bacillus anthracis} SCOP: b.40.4.4
Probab=27.26 E-value=70 Score=18.24 Aligned_cols=23 Identities=9% Similarity=0.117 Sum_probs=17.2
Q ss_pred EEEEEEec--CCCE-EEEEEeeeCCe
Q psy13437 7 AQILAVDV--VNAS-CQVKFVDYGGY 29 (80)
Q Consensus 7 a~I~~~~~--~~~~-~~V~~vDyG~~ 29 (80)
|+|+++.+ +.++ ..+.-||+|..
T Consensus 18 G~I~~~e~hp~adkpL~~~~Vd~G~~ 43 (112)
T 3g48_A 18 GTVTHAEEFKEARVPAIRLEIDFGEL 43 (112)
T ss_dssp EEEEEEEEEEETTEEEEEEEEECGGG
T ss_pred EEEEEEEECCCCCCeEEEEEEEcCCC
Confidence 67777653 3567 99999999963
No 77
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=26.98 E-value=92 Score=24.34 Aligned_cols=38 Identities=16% Similarity=0.314 Sum_probs=30.2
Q ss_pred CcEEEEEEEEEecCCCEEEEEEeeeCCeEEEccccccccc
Q psy13437 2 GGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIR 41 (80)
Q Consensus 2 ~~wyRa~I~~~~~~~~~~~V~~vDyG~~~~v~~~~lr~l~ 41 (80)
..|-.|.|++.. ++.+.|...|-|....|+.+++.+..
T Consensus 18 ~~~~~~~v~~~~--~~~~~v~~~~~~~~~~v~~~~~~~~n 55 (995)
T 2ycu_A 18 HGFEAAALRDEG--EEEAEVELAESGRRLRLPRDQIQRMN 55 (995)
T ss_dssp TEEEEEEEEEEC--SSEEEEEETTTCCEEEEEGGGCEECC
T ss_pred CceEEEEEEEec--CCeEEEEECCCCeEEEeeHHHcccCC
Confidence 569999999875 57899999887778888888776654
No 78
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=26.44 E-value=91 Score=23.77 Aligned_cols=37 Identities=14% Similarity=0.082 Sum_probs=29.7
Q ss_pred CcEEEEEEEEEecCCCEEEEEEeeeCCeEEEccccccccc
Q psy13437 2 GGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIR 41 (80)
Q Consensus 2 ~~wyRa~I~~~~~~~~~~~V~~vDyG~~~~v~~~~lr~l~ 41 (80)
..|-.|.|++.. ++.+.|. .|-|....|+.+++.+..
T Consensus 45 ~~~~~~~v~~~~--~~~~~v~-~~~g~~~~v~~~~v~~~n 81 (770)
T 1w9i_A 45 DSYECGEIVSET--SDSFTFK-TVDGQDRQVKKDDANQRN 81 (770)
T ss_dssp TCCEEEEEEEEC--SSEEEEE-CTTSCEEEEETTTCEECC
T ss_pred cCceEEEEEEec--CCeEEee-cCCCcEEEEchHhccccC
Confidence 569999999875 5788888 888888888888876654
No 79
>2hgo_A CASSIICOLIN; toxin, disulfide bridge, glycoprotein; HET: PCA 3HD; NMR {Corynespora cassiicola}
Probab=26.24 E-value=10 Score=16.23 Aligned_cols=9 Identities=33% Similarity=0.608 Sum_probs=6.0
Q ss_pred EEEeeeCCe
Q psy13437 21 VKFVDYGGY 29 (80)
Q Consensus 21 V~~vDyG~~ 29 (80)
|..|||||.
T Consensus 4 vscv~fgng 12 (27)
T 2hgo_A 4 VSCVNFGNG 12 (27)
T ss_dssp CSCEEETTT
T ss_pred eEeEeecCc
Confidence 446788874
No 80
>1d2s_A SHBG, sex hormone-binding globulin; steroid transport, laminin G-like domain, jellyroll, androgen binding protein (ABP); HET: DHT; 1.55A {Homo sapiens} SCOP: b.29.1.4 PDB: 1kdk_A* 1kdm_A*
Probab=24.47 E-value=1e+02 Score=18.22 Aligned_cols=21 Identities=24% Similarity=0.387 Sum_probs=14.3
Q ss_pred CCcEEEEEEEEEecCCCEEEEEEee
Q psy13437 1 MGGWFRAQILAVDVVNASCQVKFVD 25 (80)
Q Consensus 1 D~~wyRa~I~~~~~~~~~~~V~~vD 25 (80)
||+|++..|.... ..+ ...||
T Consensus 85 DG~WH~V~v~~~~---~~~-~L~VD 105 (170)
T 1d2s_A 85 DGRWHQVEVKMEG---DSV-LLEVD 105 (170)
T ss_dssp SSSCEEEEEEEET---TEE-EEEET
T ss_pred CCCCEEEEEEEeC---CEE-EEEEC
Confidence 7999999887653 333 33567
No 81
>1jjg_A M156R; beta barrel, S1 motif, OB fold, MYXV156R, NESG project, structural genomics, EIF-2A homolog, PSI, protein structure initiative; NMR {Myxoma virus} SCOP: b.40.4.5
Probab=23.51 E-value=40 Score=19.15 Aligned_cols=17 Identities=24% Similarity=0.468 Sum_probs=13.9
Q ss_pred CCEEEEEEeee-CCeEEE
Q psy13437 16 NASCQVKFVDY-GGYLTL 32 (80)
Q Consensus 16 ~~~~~V~~vDy-G~~~~v 32 (80)
++.+.|+++|| |....+
T Consensus 44 d~~fyV~L~dY~glEaii 61 (102)
T 1jjg_A 44 DGIFKVRLLGYEGHECIL 61 (102)
T ss_dssp TTEEEEECTTTSSCEEEE
T ss_pred CCEEEEEecCCCCceeee
Confidence 57899999999 877653
No 82
>1h3z_A Hypothetical 62.8 kDa protein C215.07C; nuclear protein, PWWP, chromatin, beta-barrel; NMR {Schizosaccharomyces pombe} SCOP: b.34.9.2
Probab=23.48 E-value=64 Score=17.98 Aligned_cols=28 Identities=18% Similarity=0.254 Sum_probs=24.2
Q ss_pred CCEEEEEEeeeCCeEEEccccccccchh
Q psy13437 16 NASCQVKFVDYGGYLTLETSALRQIRAD 43 (80)
Q Consensus 16 ~~~~~V~~vDyG~~~~v~~~~lr~l~~~ 43 (80)
.+.+.|+|..-+....|+.++|.++..+
T Consensus 46 ~~~~~V~FFg~~~~aWv~~~~l~p~~~~ 73 (109)
T 1h3z_A 46 GTFYPVIFFPNKEYLWTGSDSLTPLTSE 73 (109)
T ss_dssp SCEEEEEETTTTCCEEEEGGGEEECCHH
T ss_pred CCEEEEEEcCCCCEEEECHHHeeeCCch
Confidence 4789999998888899999999999753
No 83
>2gfu_A DNA mismatch repair protein MSH6; PWWP domain, tudor domain, DNA binding, DNA binding protein; HET: DNA; NMR {Homo sapiens}
Probab=23.02 E-value=48 Score=19.30 Aligned_cols=43 Identities=12% Similarity=0.176 Sum_probs=30.0
Q ss_pred EEEEEEEEEec---------CCCEEEEEEeeeC-CeEEEccccccccchhhcC
Q psy13437 4 WFRAQILAVDV---------VNASCQVKFVDYG-GYLTLETSALRQIRADFLS 46 (80)
Q Consensus 4 wyRa~I~~~~~---------~~~~~~V~~vDyG-~~~~v~~~~lr~l~~~f~~ 46 (80)
|.=|+|+.... ..+.+.|+|.+-+ ....|+.++|.++......
T Consensus 38 ~WPa~V~~~~~~~~~~~~~~~~~~~~V~FFg~~~~~aWv~~~~l~pf~~~~~~ 90 (134)
T 2gfu_A 38 WWPSLVYNHPFDGTFIREKGKSVRVHVQFFDDSPTRGWVSKRLLKPYTGSKSK 90 (134)
T ss_dssp CEEEECCCCSSTTCCEEESSSCEEEEEEECSSSCEEEEECGGGEEESCCTTST
T ss_pred CCCeeecchhhhhhhhhccCCCceEEEEECCCCCceEEECHHHcccCcchhHH
Confidence 56677766421 1247889987664 5688999999999876543
No 84
>3bod_A Neurexin-1-alpha; neurexin1D, LNS6, alternative splicing, calcium, cell adhesion, EGF-like domain, glycoprotein, membrane, metal- binding; 1.70A {Mus musculus} PDB: 2vh8_C 2xb6_C* 2wqz_C* 1c4r_A 3bop_A 3mw4_A*
Probab=22.67 E-value=1.1e+02 Score=18.05 Aligned_cols=25 Identities=12% Similarity=0.016 Sum_probs=17.1
Q ss_pred CCcEEEEEEEEEecCCCEEEEEEeeeCCe
Q psy13437 1 MGGWFRAQILAVDVVNASCQVKFVDYGGY 29 (80)
Q Consensus 1 D~~wyRa~I~~~~~~~~~~~V~~vDyG~~ 29 (80)
||.|++..|.... ..+ ...||-+..
T Consensus 90 Dg~WH~V~v~r~~---~~~-~L~VD~~~~ 114 (178)
T 3bod_A 90 DGKYHVVRFTRSG---GNA-TLQVDSWPV 114 (178)
T ss_dssp SSSCEEEEEEEET---TEE-EEEETTSCC
T ss_pred CCCeEEEEEEEeC---CEE-EEEEeCCce
Confidence 7999999887653 344 345776654
No 85
>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=22.65 E-value=1e+02 Score=24.12 Aligned_cols=35 Identities=11% Similarity=-0.031 Sum_probs=29.8
Q ss_pred CcEEEEEEEEEecCCCEEEEEEeeeCCeEEEcccccc
Q psy13437 2 GGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALR 38 (80)
Q Consensus 2 ~~wyRa~I~~~~~~~~~~~V~~vDyG~~~~v~~~~lr 38 (80)
|.-+.|.|+++.. ..+.|.+-++|....|+.++|-
T Consensus 887 ge~~~g~V~~V~~--~G~fV~L~~~giEGlVhis~L~ 921 (977)
T 2wp8_J 887 ESTETGYVIKVFN--NGIVVLVPKFGVEGLIRLDNLT 921 (977)
T ss_dssp TCEEEEEEEEECS--SEEEEECTTTCCEEEEEGGGTC
T ss_pred ceEEEEEEEEEcC--CeEEEEEcCCCeEEEEEecccc
Confidence 4568999999984 5788999999999999999874
No 86
>1pyb_A Methionyl-tRNA synthetase beta subunit; oligonucleotide, oligosaccharide-binding fold, OB-fold, beta-barrel, RNA binding protein; 2.50A {Aquifex aeolicus} SCOP: b.40.4.4
Probab=22.57 E-value=1.1e+02 Score=17.21 Aligned_cols=22 Identities=14% Similarity=0.161 Sum_probs=17.2
Q ss_pred EEEEEEec--CCCEEEEEEeeeCC
Q psy13437 7 AQILAVDV--VNASCQVKFVDYGG 28 (80)
Q Consensus 7 a~I~~~~~--~~~~~~V~~vDyG~ 28 (80)
|+|+++.+ +.+...+.-||+|.
T Consensus 20 G~I~~~e~hp~adkL~~~~Vd~G~ 43 (111)
T 1pyb_A 20 AKVLSAERVEGSEKLLKLTLSLGD 43 (111)
T ss_dssp EEEEEEECCSSCSCCEEEEEEETT
T ss_pred EEEEEEEECCCCCccEEEEEEeCC
Confidence 67887764 34678999999997
No 87
>1w2f_A Inositol-trisphosphate 3-kinase A; inositol phosphate kinase, transferase, calmodulin-binding; 1.8A {Homo sapiens} SCOP: d.143.1.3 PDB: 1tzd_A* 1w2d_A* 1w2c_A*
Probab=22.51 E-value=66 Score=21.35 Aligned_cols=30 Identities=20% Similarity=0.218 Sum_probs=21.0
Q ss_pred EEEEEEEEEecCCCEEEEEEeeeCCeEEEc
Q psy13437 4 WFRAQILAVDVVNASCQVKFVDYGGYLTLE 33 (80)
Q Consensus 4 wyRa~I~~~~~~~~~~~V~~vDyG~~~~v~ 33 (80)
+|-+-++=+.+..+.+.|.+|||+.+...+
T Consensus 210 f~sSSLL~vYD~~~~~~v~mIDFAh~~~~~ 239 (276)
T 1w2f_A 210 VIGSSLLFVHDHCHRAGVWLIDFGKTTPLP 239 (276)
T ss_dssp EESCEEEEEECTTCCEEEEEECCTEEEECS
T ss_pred cccceEEEEEeCCCcCcEEEEECCceEEcC
Confidence 344445555544468999999999987765
No 88
>3l42_A Peregrin; transcription regulation, histone H3 acetylation, chromatin modification, structural genomics, structural genomics CONS SGC, activator; 1.30A {Homo sapiens} PDB: 3mo8_A* 2x4w_A* 2x35_A* 2x4x_A* 2x4y_A*
Probab=22.42 E-value=87 Score=18.56 Aligned_cols=27 Identities=19% Similarity=0.158 Sum_probs=21.8
Q ss_pred CCEEEEEEeee-CCeEEEccccccccch
Q psy13437 16 NASCQVKFVDY-GGYLTLETSALRQIRA 42 (80)
Q Consensus 16 ~~~~~V~~vDy-G~~~~v~~~~lr~l~~ 42 (80)
...+.|.|.|- .....|+.++|++|-.
T Consensus 63 ~~~y~V~FFd~~~t~aWv~~~~i~pl~~ 90 (130)
T 3l42_A 63 EHLYLVLFFDNKRTWQWLPRTKLVPLGV 90 (130)
T ss_dssp SCEEEEEESSTTCCEEEEEGGGEEESSS
T ss_pred CcEEEEEeCCCCCceEeecccceeecCC
Confidence 45789999995 5678899999998863
No 89
>1pz7_A Agrin; structural protein; 1.42A {Gallus gallus} SCOP: b.29.1.4 PDB: 1pz8_A 1pz9_A 1q56_A
Probab=22.10 E-value=1.1e+02 Score=18.40 Aligned_cols=24 Identities=13% Similarity=0.118 Sum_probs=15.3
Q ss_pred CCcEEEEEEEEEecCCCEEEEEEeeeCC
Q psy13437 1 MGGWFRAQILAVDVVNASCQVKFVDYGG 28 (80)
Q Consensus 1 D~~wyRa~I~~~~~~~~~~~V~~vDyG~ 28 (80)
||+|++..|.... ..+ ...||-..
T Consensus 108 Dg~WH~V~v~r~~---~~~-~L~VD~~~ 131 (204)
T 1pz7_A 108 TNHWTHIKAYRVQ---REG-SLQVGNEA 131 (204)
T ss_dssp SSSCEEEEEEEET---TEE-EEEETTSC
T ss_pred CCCeEEEEEEEeC---CEE-EEEECCcc
Confidence 7999999987653 233 33466543
No 90
>2fhd_A RAD9 homolog, DNA repair protein RHP9/CRB2; tamdem tudor domains, cell cycle; HET: DNA MSE PO4; 2.40A {Schizosaccharomyces pombe}
Probab=21.86 E-value=1.5e+02 Score=18.16 Aligned_cols=40 Identities=15% Similarity=0.176 Sum_probs=29.7
Q ss_pred CcEEEEEEEEEec----CCCEEEEEEeeeCCeEEEccccccccch
Q psy13437 2 GGWFRAQILAVDV----VNASCQVKFVDYGGYLTLETSALRQIRA 42 (80)
Q Consensus 2 ~~wyRa~I~~~~~----~~~~~~V~~vDyG~~~~v~~~~lr~l~~ 42 (80)
..||=|.+++... .+..+.|.|-|=... .|..+.+|.|.-
T Consensus 21 ~~YYPATcvg~~~~~~~~~~~y~VrFdDs~~~-~V~~~~vk~LeL 64 (153)
T 2fhd_A 21 SFYYPATLVAPVHSAVTSSIMYKVQFDDATMS-TVNSNQIKRFFL 64 (153)
T ss_dssp CCEEEEEEEEEECCSSCCBCEEEEEETTSCEE-EEETTSEEESCC
T ss_pred ccccceEEEccCCCcccCCeEEEEEEcCCCCC-ccChhhceeeee
Confidence 3689999998873 246888888775444 888888887763
No 91
>1f5f_A SHBG, sex hormone-binding globulin; jellyroll, signaling protein; HET: DHT; 1.70A {Homo sapiens} SCOP: b.29.1.4 PDB: 1lhw_A* 1lho_A* 1lhn_A* 1lhv_A* 1lhu_A*
Probab=21.65 E-value=1.2e+02 Score=18.38 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=15.4
Q ss_pred CCcEEEEEEEEEecCCCEEEEEEeeeCC
Q psy13437 1 MGGWFRAQILAVDVVNASCQVKFVDYGG 28 (80)
Q Consensus 1 D~~wyRa~I~~~~~~~~~~~V~~vDyG~ 28 (80)
||+|++..|.... .. -...||-..
T Consensus 97 DG~WH~V~v~r~~---~~-~~L~VD~~~ 120 (205)
T 1f5f_A 97 DGRWHQVEVKMEG---DS-VLLEVDGEE 120 (205)
T ss_dssp SSSCEEEEEEEET---TE-EEEEETTEE
T ss_pred CCCCEEEEEEEeC---CE-EEEEECCee
Confidence 7999999987653 23 334566433
No 92
>1fl0_A Endothelial-monocyte activating polypeptide II; RNA-binding domain, OB-fold, tRNA synthetase complex, RNA binding protein; 1.50A {Homo sapiens} SCOP: b.40.4.4 PDB: 1e7z_A 1euj_A
Probab=21.64 E-value=1.1e+02 Score=18.90 Aligned_cols=23 Identities=26% Similarity=0.174 Sum_probs=17.4
Q ss_pred EEEEEEec--CCCEEEEEEeeeCCe
Q psy13437 7 AQILAVDV--VNASCQVKFVDYGGY 29 (80)
Q Consensus 7 a~I~~~~~--~~~~~~V~~vDyG~~ 29 (80)
|+|+++.+ +.+...+.-||.|..
T Consensus 11 G~I~~~e~hP~AdkL~v~~VD~G~~ 35 (171)
T 1fl0_A 11 GCIITARKHPDADSLYVEEVDVGEI 35 (171)
T ss_dssp EEEEEEEEETTEEEEEEEEEECSSS
T ss_pred EEEEEEEECCCCCccEEEEEEcCCC
Confidence 67877653 346889999999974
No 93
>2r16_A Neurexin-1-alpha; beta-sandwich, cell adhesion, splicing; 1.04A {Bos taurus}
Probab=21.56 E-value=1.2e+02 Score=17.97 Aligned_cols=25 Identities=16% Similarity=0.134 Sum_probs=17.2
Q ss_pred CCcEEEEEEEEEecCCCEEEEEEeeeCCe
Q psy13437 1 MGGWFRAQILAVDVVNASCQVKFVDYGGY 29 (80)
Q Consensus 1 D~~wyRa~I~~~~~~~~~~~V~~vDyG~~ 29 (80)
||.|++..|.... ..+ ...||....
T Consensus 86 Dg~WH~V~v~r~~---~~~-~L~VD~~~~ 110 (182)
T 2r16_A 86 DNEWHTVRVVRRG---KSL-KLTVDDQQA 110 (182)
T ss_dssp SSSCEEEEEEEET---TEE-EEEETTCCE
T ss_pred CCCeEEEEEEEEC---CEE-EEEECCcee
Confidence 7999999887663 333 345776655
No 94
>3sh4_A LG3 peptide; actin disassambly, integrin alpha12 BETA1, metal binding Pro; 1.50A {Homo sapiens} PDB: 3sh5_A
Probab=21.43 E-value=1.2e+02 Score=18.20 Aligned_cols=25 Identities=24% Similarity=0.238 Sum_probs=16.3
Q ss_pred CCcEEEEEEEEEecCCCEEEEEEeeeCCe
Q psy13437 1 MGGWFRAQILAVDVVNASCQVKFVDYGGY 29 (80)
Q Consensus 1 D~~wyRa~I~~~~~~~~~~~V~~vDyG~~ 29 (80)
||.|++..|.... ..+. ..||-...
T Consensus 94 Dg~WH~V~v~r~~---~~~~-L~VD~~~~ 118 (195)
T 3sh4_A 94 DGEWHRVTALREG---RRGS-IQVDGEEL 118 (195)
T ss_dssp SSSCEEEEEEEET---TEEE-EEETTCCC
T ss_pred CCCeEEEEEEEeC---CEEE-EEECCeee
Confidence 7999999887653 3333 46675543
No 95
>2r1b_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion, splicing; 1.72A {Rattus norvegicus} PDB: 3mw2_A* 3b3q_E* 3mw3_A*
Probab=21.28 E-value=1.2e+02 Score=18.81 Aligned_cols=24 Identities=13% Similarity=0.032 Sum_probs=15.7
Q ss_pred CCcEEEEEEEEEecCCCEEEEEEeeeCC
Q psy13437 1 MGGWFRAQILAVDVVNASCQVKFVDYGG 28 (80)
Q Consensus 1 D~~wyRa~I~~~~~~~~~~~V~~vDyG~ 28 (80)
||.|++..|.... ..+ ..-||-..
T Consensus 96 DG~WH~V~v~r~~---~~~-~L~VD~~~ 119 (220)
T 2r1b_A 96 DGKYHVVRFTRSG---GNA-TLQVDSWP 119 (220)
T ss_dssp SSSCEEEEEEEET---TEE-EEEETTSC
T ss_pred CCceEEEEEEEeC---CEE-EEEECCcc
Confidence 7999999987663 333 34456553
No 96
>1mkh_A Metrs;, C-terminal domain of methionyl-tRNA synthetase; beta barrel, dimerization domain, ligase; 2.01A {Pyrococcus abyssi} SCOP: b.40.4.4
Probab=20.94 E-value=92 Score=17.50 Aligned_cols=22 Identities=27% Similarity=0.261 Sum_probs=17.1
Q ss_pred EEEEEEec--CCCEEEEEEeeeCC
Q psy13437 7 AQILAVDV--VNASCQVKFVDYGG 28 (80)
Q Consensus 7 a~I~~~~~--~~~~~~V~~vDyG~ 28 (80)
|+|+++.+ +.+...+.-||.|.
T Consensus 16 G~I~~~e~hp~adkL~~~~Vd~G~ 39 (107)
T 1mkh_A 16 GKIIEVKDHPNADKLYVVKVDLGD 39 (107)
T ss_dssp EEEEEEEECTTCSSCEEEEEECSS
T ss_pred EEEEEEEECCCCCccEEEEEEeCC
Confidence 67887653 44678999999997
No 97
>1y96_A Gemin6, SIP2, GEM-associated protein 6; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=20.79 E-value=84 Score=17.27 Aligned_cols=24 Identities=21% Similarity=0.419 Sum_probs=17.3
Q ss_pred CCcEEEEEEEEEecCCCEEEEEEeee
Q psy13437 1 MGGWFRAQILAVDVVNASCQVKFVDY 26 (80)
Q Consensus 1 D~~wyRa~I~~~~~~~~~~~V~~vDy 26 (80)
||+-|++.+..+++. .+.|-+++.
T Consensus 26 dg~~y~G~l~tvDp~--s~sIvL~n~ 49 (86)
T 1y96_A 26 EKNEYKGWVLTTDPV--SANIVLVNF 49 (86)
T ss_dssp TTEEEEEEEEEECTT--TCCEEEEEE
T ss_pred CCCEEEEEEEEECCC--ceEEEEeec
Confidence 688899999999853 355555554
No 98
>2a98_A Inositol 1,4,5-trisphosphate 3-kinase C; structural genomics, structural genomics consortium, SGC, transferase; HET: I3P; 2.60A {Homo sapiens}
Probab=20.75 E-value=71 Score=20.99 Aligned_cols=26 Identities=23% Similarity=0.365 Sum_probs=18.8
Q ss_pred EEEEEecCCCEEEEEEeeeCCeEEEc
Q psy13437 8 QILAVDVVNASCQVKFVDYGGYLTLE 33 (80)
Q Consensus 8 ~I~~~~~~~~~~~V~~vDyG~~~~v~ 33 (80)
-++=+.+..+.+.|.+|||+.+..++
T Consensus 197 SLL~vYD~~~~~~v~lIDFAh~~~~~ 222 (259)
T 2a98_A 197 SLLFVHDHTGLAKVWMIDFGKTVALP 222 (259)
T ss_dssp EEEEEECTTSCEEEEEECCTTEEECS
T ss_pred eEEEEEeCCCcCcEEEEECCceeecC
Confidence 34444443468999999999998765
No 99
>2h0b_A Neurexin-1-alpha; B-sandwich, cell adhesion; 2.10A {Bos taurus}
Probab=20.58 E-value=1.3e+02 Score=17.65 Aligned_cols=22 Identities=14% Similarity=0.110 Sum_probs=14.4
Q ss_pred CCcEEEEEEEEEecCCCEEEEEEeee
Q psy13437 1 MGGWFRAQILAVDVVNASCQVKFVDY 26 (80)
Q Consensus 1 D~~wyRa~I~~~~~~~~~~~V~~vDy 26 (80)
||.|++..|.... ..+. ..||-
T Consensus 88 Dg~WH~V~v~r~~---~~~~-L~VD~ 109 (184)
T 2h0b_A 88 DNAWHDVKVTRNL---RQVT-ISVDG 109 (184)
T ss_dssp SSSCEEEEEEEET---TEEE-EEETT
T ss_pred CCCeEEEEEEEeC---CEEE-EEEcC
Confidence 7999999988543 3333 35673
No 100
>2aqx_A Predicted: inositol 1,4,5-trisphosphate 3-kinase; IP3K, ITPKB, IP3-3K, IP3-3KB, IP3, calmodu binding, transferase; HET: ATP; 2.50A {Mus musculus}
Probab=20.28 E-value=74 Score=21.28 Aligned_cols=28 Identities=18% Similarity=0.323 Sum_probs=20.0
Q ss_pred EEEEEEEecCCCEEEEEEeeeCCeEEEc
Q psy13437 6 RAQILAVDVVNASCQVKFVDYGGYLTLE 33 (80)
Q Consensus 6 Ra~I~~~~~~~~~~~V~~vDyG~~~~v~ 33 (80)
-+-++=+.+.++.+.|.+|||+.+...+
T Consensus 225 sSSLL~vYD~~~~~~v~mIDFAh~~~~~ 252 (289)
T 2aqx_A 225 GSSLLFIHDKKEQAKVWMIDFGKTTPLP 252 (289)
T ss_dssp SCEEEEEECTTCCEEEEEECCTTEEECS
T ss_pred eeeEEEEEeCCCcCcEEEEECCceeEcC
Confidence 3444545544468999999999997764
No 101
>2lcd_A AT-rich interactive domain-containing protein 4A; tudor domain, RBBP1, transcription; NMR {Homo sapiens}
Probab=25.44 E-value=22 Score=20.92 Aligned_cols=36 Identities=28% Similarity=0.250 Sum_probs=25.9
Q ss_pred CCcEEEEEEEEEecCCCEEEEEEeeeCCeEEEcccccc
Q psy13437 1 MGGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALR 38 (80)
Q Consensus 1 D~~wyRa~I~~~~~~~~~~~V~~vDyG~~~~v~~~~lr 38 (80)
|+.|.+|.|.++.. ...+.|.| |-|...++.+.+|+
T Consensus 69 ~~~~~~~~I~~i~D-~S~YtVVF-dDGD~ktLrRt~lc 104 (118)
T 2lcd_A 69 DGSFQEAIISKLTD-ASWYTVVF-DDGDERTLRRTSLC 104 (118)
Confidence 46788999998874 35666665 66887777777665
Done!