RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13437
         (80 letters)



>d2diqa1 b.34.9.1 (A:8-104) Tudor and KH domain-containing protein
          TDRKH {Human (Homo sapiens) [TaxId: 9606]}
          Length = 97

 Score = 68.8 bits (168), Expect = 1e-17
 Identities = 28/58 (48%), Positives = 36/58 (62%), Gaps = 1/58 (1%)

Query: 2  GGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRADFLSLPFQAIECGLANI 59
          G W+RA++L     N +  + FVD+G         LR +R+DFLSLPFQAIEC LA I
Sbjct: 40 GSWYRARVLGTLE-NGNLDLYFVDFGDNGDCPLKDLRALRSDFLSLPFQAIECSLARI 96


>d2hqxa1 b.34.9.1 (A:8-97) P100 co-activator, SND1 {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 90

 Score = 53.8 bits (129), Expect = 7e-12
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 3/52 (5%)

Query: 2  GGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRADFLS--LPFQA 51
          G W+RA++  V+   A   V ++DYG    L ++ L  +   F +  LP QA
Sbjct: 39 GEWYRARVEKVES-PAKIHVFYIDYGNREVLPSTRLGTLSPAFSTRVLPAQA 89


>d2d9ta1 b.34.9.1 (A:8-67) Tudor domain-containing protein 3,
          TDRD3 {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 60

 Score = 46.7 bits (111), Expect = 1e-09
 Identities = 11/42 (26%), Positives = 23/42 (54%)

Query: 2  GGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRAD 43
            ++RA++ A+     +  VKF DYG Y  +  S ++ ++ +
Sbjct: 17 NKFYRAEVEALHSSGMTAVVKFTDYGNYEEVLLSNIKPVQTE 58


>d1mhna_ b.34.9.1 (A:) Survival motor neuron protein 1, smn {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 59

 Score = 37.5 bits (87), Expect = 6e-06
 Identities = 10/39 (25%), Positives = 15/39 (38%)

Query: 2  GGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQI 40
          G  + A I ++D    +C V +  YG       S L   
Sbjct: 18 GCIYPATIASIDFKRETCVVVYTGYGNREEQNLSDLLSP 56


>d1w3ia_ c.1.10.1 (A:) 2-keto-3-deoxy gluconate aldolase Eda
          {Sulfolobus solfataricus [TaxId: 2287]}
          Length = 293

 Score = 25.9 bits (55), Expect = 0.59
 Identities = 9/48 (18%), Positives = 18/48 (37%), Gaps = 7/48 (14%)

Query: 30 LTLETSALRQIRADFLSLPFQAIECGLANIVPVGTDGEYNIILIVERI 77
            ++   L+   A+ L      I  G+  +   GT G    +   E++
Sbjct: 15 NRIDKEKLKIH-AENL------IRKGIDKLFVNGTTGLGPSLSPEEKL 55


>d1hl2a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Escherichia coli
          [TaxId: 562]}
          Length = 295

 Score = 25.4 bits (54), Expect = 0.72
 Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 7/48 (14%)

Query: 30 LTLETSALRQIRADFLSLPFQAIECGLANIVPVGTDGEYNIILIVERI 77
            L+ ++LR++   F       I+ G+  +   G+ GE  +  + ER 
Sbjct: 18 QALDKASLRRL-VQFN------IQQGIDGLYVGGSTGEAFVQSLSERE 58


>d1xxxa1 c.1.10.1 (A:5-300) Dihydrodipicolinate synthase
          {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 296

 Score = 24.1 bits (51), Expect = 2.2
 Identities = 8/26 (30%), Positives = 12/26 (46%)

Query: 52 IECGLANIVPVGTDGEYNIILIVERI 77
          ++ G   +V  GT GE       E+I
Sbjct: 38 VDQGCDGLVVSGTTGESPTTTDGEKI 63


>d1o5ka_ c.1.10.1 (A:) Dihydrodipicolinate synthase {Thermotoga
          maritima [TaxId: 2336]}
          Length = 295

 Score = 24.1 bits (51), Expect = 2.5
 Identities = 8/26 (30%), Positives = 14/26 (53%)

Query: 52 IECGLANIVPVGTDGEYNIILIVERI 77
          +E G+  ++ +GT GE   +   ER 
Sbjct: 32 LENGVNALIVLGTTGESPTVNEDERE 57


>d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus
          anthracis [TaxId: 1392]}
          Length = 292

 Score = 24.0 bits (51), Expect = 2.6
 Identities = 9/26 (34%), Positives = 13/26 (50%)

Query: 52 IECGLANIVPVGTDGEYNIILIVERI 77
          I+ G   IV  GT GE   +   E++
Sbjct: 34 IDNGTTAIVVGGTTGESPTLTSEEKV 59


>d2a6na1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase
          {Escherichia coli [TaxId: 562]}
          Length = 292

 Score = 23.7 bits (50), Expect = 3.1
 Identities = 9/26 (34%), Positives = 12/26 (46%)

Query: 52 IECGLANIVPVGTDGEYNIILIVERI 77
          +  G + IV VGT GE   +   E  
Sbjct: 32 VASGTSAIVSVGTTGESATLNHDEHA 57


>d1of5b_ d.17.4.2 (B:) mRNA transport regulator MTR2 {Baker's
          yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 165

 Score = 22.5 bits (48), Expect = 8.1
 Identities = 5/14 (35%), Positives = 10/14 (71%)

Query: 14 VVNASCQVKFVDYG 27
          + N +C+V+F + G
Sbjct: 82 ICNVNCKVRFDESG 95


>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 213

 Score = 22.2 bits (46), Expect = 9.4
 Identities = 9/19 (47%), Positives = 11/19 (57%)

Query: 59  IVPVGTDGEYNIILIVERI 77
           I+P G D    I LIV+ I
Sbjct: 189 IIPRGADNLVAINLIVQHI 207


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.144    0.431 

Gapped
Lambda     K      H
   0.267   0.0599    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 305,671
Number of extensions: 11014
Number of successful extensions: 25
Number of sequences better than 10.0: 1
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 12
Length of query: 80
Length of database: 2,407,596
Length adjustment: 46
Effective length of query: 34
Effective length of database: 1,776,016
Effective search space: 60384544
Effective search space used: 60384544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.2 bits)