Query psy13438
Match_columns 154
No_of_seqs 125 out of 593
Neff 6.0
Searched_HMMs 46136
Date Fri Aug 16 19:25:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13438.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13438hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1053|consensus 99.9 2.8E-27 6.1E-32 218.4 10.9 119 26-153 381-499 (1258)
2 KOG4440|consensus 99.9 1.1E-21 2.4E-26 177.1 9.3 132 8-152 354-495 (993)
3 PF10613 Lig_chan-Glu_bd: Liga 99.7 2.1E-17 4.5E-22 111.2 4.2 37 117-153 16-52 (65)
4 KOG1054|consensus 99.6 4.5E-16 9.7E-21 140.5 8.6 107 8-153 373-479 (897)
5 KOG1052|consensus 99.2 8.2E-11 1.8E-15 107.2 11.1 106 8-153 169-277 (656)
6 PRK15007 putative ABC transpor 95.7 0.029 6.4E-07 44.1 5.7 47 59-143 20-67 (243)
7 PF00497 SBP_bac_3: Bacterial 95.6 0.024 5.2E-07 42.9 5.0 24 120-143 22-45 (225)
8 TIGR01096 3A0103s03R lysine-ar 95.2 0.062 1.3E-06 42.3 6.1 46 60-143 24-70 (250)
9 PRK15010 ABC transporter lysin 95.1 0.062 1.3E-06 43.2 6.0 48 58-143 24-72 (260)
10 PRK15437 histidine ABC transpo 94.9 0.067 1.5E-06 43.0 5.5 49 58-144 24-73 (259)
11 PRK09495 glnH glutamine ABC tr 93.7 0.17 3.6E-06 40.2 5.6 24 120-143 47-70 (247)
12 TIGR02995 ectoine_ehuB ectoine 93.1 0.11 2.4E-06 42.2 3.7 50 56-143 29-79 (275)
13 PRK10859 membrane-bound lytic 92.7 0.33 7.2E-06 43.3 6.4 25 120-144 64-88 (482)
14 PRK11260 cystine transporter s 92.4 0.43 9.4E-06 38.4 6.3 50 57-144 38-88 (266)
15 PRK10797 glutamate and asparta 91.5 0.52 1.1E-05 39.4 5.8 48 58-143 38-93 (302)
16 smart00062 PBPb Bacterial peri 91.3 0.72 1.6E-05 33.5 5.8 24 120-143 23-46 (219)
17 TIGR03871 ABC_peri_MoxJ_2 quin 91.2 0.36 7.8E-06 37.6 4.4 25 120-144 19-43 (232)
18 TIGR03870 ABC_MoxJ methanol ox 90.4 0.47 1E-05 38.0 4.5 25 120-144 19-43 (246)
19 PRK09959 hybrid sensory histid 89.7 0.75 1.6E-05 44.8 6.0 48 59-144 301-349 (1197)
20 TIGR02285 conserved hypothetic 87.1 1.9 4.2E-05 34.7 6.0 47 59-143 17-64 (268)
21 PRK11917 bifunctional adhesin/ 86.4 1.7 3.7E-05 35.2 5.3 48 57-141 35-86 (259)
22 PRK09959 hybrid sensory histid 84.1 2.2 4.7E-05 41.7 5.6 24 120-143 80-103 (1197)
23 cd00134 PBPb Bacterial peripla 74.8 7.3 0.00016 28.3 4.8 25 120-144 22-46 (218)
24 COG0834 HisJ ABC-type amino ac 39.8 65 0.0014 25.1 4.8 23 120-142 59-83 (275)
25 KOG3798|consensus 36.1 28 0.00062 29.8 2.2 28 120-148 239-266 (343)
26 PF11410 Antifungal_pept: Anti 32.4 27 0.00059 20.8 1.1 11 114-124 13-23 (36)
27 PF10050 DUF2284: Predicted me 25.9 58 0.0013 25.0 2.3 20 120-140 131-150 (166)
28 PF13744 HTH_37: Helix-turn-he 25.7 1.1E+02 0.0024 20.4 3.4 23 120-142 57-79 (80)
29 PF04807 Gemini_AC4_5: Geminiv 25.5 57 0.0012 19.1 1.7 22 117-138 6-27 (33)
No 1
>KOG1053|consensus
Probab=99.94 E-value=2.8e-27 Score=218.45 Aligned_cols=119 Identities=36% Similarity=0.707 Sum_probs=100.1
Q ss_pred EEEEEcCcCCCceeEeeecCCCCCCCCCCCCCCCceEEEEeeccCCeEEEcCCCCCCCcccCcCceeeeecCCCCcchhh
Q psy13438 26 CIGVWKSWEKEGLDIKDIVWPGNSHTPPQGVPEKFHLKITFLEEAPYIQMSPPDPVTGKCNMNRGVICRVAGDADMDKID 105 (154)
Q Consensus 26 ~vG~W~~~~~~~L~~~~~~wpg~~~~~p~~~~~~~~LrVvTi~e~PfV~~~~~~~~~g~C~~~~~v~c~~~~~~~~~~~~ 105 (154)
+||.|. ++.|.|++.+||.... .+++.+.+.||+|+|++|+|||++++.||.+++|++ ++++|.++.+..+.
T Consensus 381 ~VG~We---~~~L~M~y~vWPr~~~-~~q~~~d~~HL~VvTLeE~PFVive~vDP~t~~C~~-ntvpc~s~~~~t~s--- 452 (1258)
T KOG1053|consen 381 RVGSWE---NGTLVMKYPVWPRYHK-FLQPVPDKLHLTVVTLEERPFVIVEDVDPLTQTCVR-NTVPCRSQLNSTFS--- 452 (1258)
T ss_pred eeceec---CCeEEEeccccccccC-ccCCCCCcceeEEEEeccCCeEEEecCCCCcCcCCC-CCCcchhhhhhccC---
Confidence 788885 5899999999996654 467777888999999999999999999999999997 59999976543322
Q ss_pred hhhccCCCccccccccchHHHHHHHHHHhCCeEEEEEecCCCCCCcCC
Q psy13438 106 VAMAHHNESFYQCCSGFCIDLLGKFAEELGFTYELVRVEDGKWGTQED 153 (154)
Q Consensus 106 ~~~~~gn~~~~~Cc~G~cIDLL~~La~~l~F~Yel~lv~DGkyGs~~~ 153 (154)
....+|.+.++||+|||||||++||++++|+|+||+|.|||||++.+
T Consensus 453 -s~~~~~~tvKkCCkGfCIDiLkKlA~~v~FtYDLYlVtnGKhGkk~n 499 (1258)
T KOG1053|consen 453 -SGDEANRTVKKCCKGFCIDILKKLARDVKFTYDLYLVTNGKHGKKIN 499 (1258)
T ss_pred -CCccCCchHHhhhhhhhHHHHHHHHhhcCcceEEEEecCCcccceec
Confidence 11134556699999999999999999999999999999999998754
No 2
>KOG4440|consensus
Probab=99.86 E-value=1.1e-21 Score=177.05 Aligned_cols=132 Identities=31% Similarity=0.644 Sum_probs=100.3
Q ss_pred eeeeEEEEeeeCCccCCeEEEEEcCcCCCceeE--eeecCCCCCCCCCCCCCCCceEEEEeeccCCeEEEcCCCCCCCcc
Q psy13438 8 SMIIEIELFHPTIFTSGICIGVWKSWEKEGLDI--KDIVWPGNSHTPPQGVPEKFHLKITFLEEAPYIQMSPPDPVTGKC 85 (154)
Q Consensus 8 ~~~~~i~~~~~~~~~~~~~vG~W~~~~~~~L~~--~~~~wpg~~~~~p~~~~~~~~LrVvTi~e~PfV~~~~~~~~~g~C 85 (154)
-++|+|+|+|...-. ..+|..+. ..+.+ +.++|||+...+|.+.+..+||||+||.++|||++++.- .+|+|
T Consensus 354 ~a~YdiiN~hq~rk~--Vg~~~yd~---~r~~~nd~~IiWpGg~~~KP~gi~~pthLrivTi~~~PFVYv~p~~-sd~~c 427 (993)
T KOG4440|consen 354 FANYDIINLHQNRKL--VGVGIYDG---TRVIPNDRKIIWPGGETEKPRGIQMPTHLRIVTIHQEPFVYVKPTL-SDGTC 427 (993)
T ss_pred eccceeEehhhhhhh--hhhccccc---eeeccCCceeecCCCCcCCCccccccceeEEEEeccCCeEEEecCC-CCcch
Confidence 468999999854332 12444443 34555 679999998889999999999999999999999999653 36677
Q ss_pred cCc--------CceeeeecCCCCcchhhhhhccCCCccccccccchHHHHHHHHHHhCCeEEEEEecCCCCCCcC
Q psy13438 86 NMN--------RGVICRVAGDADMDKIDVAMAHHNESFYQCCSGFCIDLLGKFAEELGFTYELVRVEDGKWGTQE 152 (154)
Q Consensus 86 ~~~--------~~v~c~~~~~~~~~~~~~~~~~gn~~~~~Cc~G~cIDLL~~La~~l~F~Yel~lv~DGkyGs~~ 152 (154)
.+. .-++|..+.+..- .++.+ +.++||.|||||||.+||+.+||+|++.+++||+||.+.
T Consensus 428 ~eef~~~~d~~~k~~c~gpn~s~p------~s~~~-t~~fCC~G~cIDLLi~Ls~~~Nftyd~~l~~dg~fg~~~ 495 (993)
T KOG4440|consen 428 KEEFTVNGDPVKKVICTGPNDSSP------GSPRH-TVPFCCYGFCIDLLIKLSRTMNFTYDVHLVADGKFGTQE 495 (993)
T ss_pred hhhccccCCcccceeecCCCCCCC------CCccc-CcchhhhHHHHHHHHHHHHhhcceEEEEEeeccccccee
Confidence 543 2466766554321 01222 568999999999999999999999999999999999763
No 3
>PF10613 Lig_chan-Glu_bd: Ligated ion channel L-glutamate- and glycine-binding site; InterPro: IPR019594 This entry, sometimes called the S1 domain, is the luminal domain just upstream of the first, M1, transmembrane region of transmembrane ion-channel proteins, and binds L-glutamate and glycine [, ]. It is found in association with IPR001320 from INTERPRO. ; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 4E0W_A 3S9E_A 3QXM_B 2F34_A 3C34_B 3S2V_A 3GBB_B 2F36_D 4E0X_A 1TXF_A ....
Probab=99.69 E-value=2.1e-17 Score=111.19 Aligned_cols=37 Identities=51% Similarity=0.958 Sum_probs=30.7
Q ss_pred cccccchHHHHHHHHHHhCCeEEEEEecCCCCCCcCC
Q psy13438 117 QCCSGFCIDLLGKFAEELGFTYELVRVEDGKWGTQED 153 (154)
Q Consensus 117 ~Cc~G~cIDLL~~La~~l~F~Yel~lv~DGkyGs~~~ 153 (154)
.||+|||||||++||+.++|+|+|++|+||+||++++
T Consensus 16 ~~~eGyciDll~~la~~l~F~y~i~~~~Dg~yG~~~~ 52 (65)
T PF10613_consen 16 DRYEGYCIDLLEELAEELNFTYEIYLVPDGKYGSKNP 52 (65)
T ss_dssp GGEESHHHHHHHHHHHHHT-EEEEEE-TTS--EEBET
T ss_pred ccEEEEHHHHHHHHHHHcCCeEEEEECCCCCCcCcCC
Confidence 4559999999999999999999999999999999876
No 4
>KOG1054|consensus
Probab=99.64 E-value=4.5e-16 Score=140.49 Aligned_cols=107 Identities=26% Similarity=0.515 Sum_probs=83.6
Q ss_pred eeeeEEEEeeeCCccCCeEEEEEcCcCCCceeEeeecCCCCCCCCCCCCCCCceEEEEeeccCCeEEEcCCCCCCCcccC
Q psy13438 8 SMIIEIELFHPTIFTSGICIGVWKSWEKEGLDIKDIVWPGNSHTPPQGVPEKFHLKITFLEEAPYIQMSPPDPVTGKCNM 87 (154)
Q Consensus 8 ~~~~~i~~~~~~~~~~~~~vG~W~~~~~~~L~~~~~~wpg~~~~~p~~~~~~~~LrVvTi~e~PfV~~~~~~~~~g~C~~ 87 (154)
+..++|+++.++... ++|.|+.. .++.....+ ++.. ..+...++++..|+||.+.||||.+.+..
T Consensus 373 Nyt~~i~elk~~~~r---k~~~W~e~--~~fv~~~t~-a~~~--~d~~~~~n~tvvvttiL~spyvm~kkn~~------- 437 (897)
T KOG1054|consen 373 NYTIDIVELKSNGSR---KVGYWNEG--EGFVPGSTV-AQSR--NDQASKENRTVVVTTILESPYVMLKKNHE------- 437 (897)
T ss_pred cceEEEEEeccCCcc---eeeeeccc--Cceeecccc-cccc--ccccccccceEEEEEecCCchhHHHhhHH-------
Confidence 455677777777644 99999974 577665433 2221 23344588999999999999999987631
Q ss_pred cCceeeeecCCCCcchhhhhhccCCCccccccccchHHHHHHHHHHhCCeEEEEEecCCCCCCcCC
Q psy13438 88 NRGVICRVAGDADMDKIDVAMAHHNESFYQCCSGFCIDLLGKFAEELGFTYELVRVEDGKWGTQED 153 (154)
Q Consensus 88 ~~~v~c~~~~~~~~~~~~~~~~~gn~~~~~Cc~G~cIDLL~~La~~l~F~Yel~lv~DGkyGs~~~ 153 (154)
.+ .||++| +||||||+.+||++++++|++.+|+||+||++++
T Consensus 438 ------------~~--------egn~ry----EGyCvdLa~~iAkhi~~~Y~l~iv~dgkyGarda 479 (897)
T KOG1054|consen 438 ------------QL--------EGNERY----EGYCVDLAAEIAKHIGIKYKLFIVGDGKYGARDA 479 (897)
T ss_pred ------------Hh--------cCCccc----ceeHHHHHHHHHHhcCceEEEEEecCCcccccCC
Confidence 12 379999 9999999999999999999999999999999875
No 5
>KOG1052|consensus
Probab=99.22 E-value=8.2e-11 Score=107.25 Aligned_cols=106 Identities=29% Similarity=0.528 Sum_probs=82.2
Q ss_pred eeeeEEEEeeeCCccCCeEEEEEcCcCCCceeEeeecCCCCCCCCCCCCC---CCceEEEEeeccCCeEEEcCCCCCCCc
Q psy13438 8 SMIIEIELFHPTIFTSGICIGVWKSWEKEGLDIKDIVWPGNSHTPPQGVP---EKFHLKITFLEEAPYIQMSPPDPVTGK 84 (154)
Q Consensus 8 ~~~~~i~~~~~~~~~~~~~vG~W~~~~~~~L~~~~~~wpg~~~~~p~~~~---~~~~LrVvTi~e~PfV~~~~~~~~~g~ 84 (154)
...++|.+...+... .+|.|++- .+ ..+.||+.....+.+.. .+.+|+|++..++||++..+..+
T Consensus 169 ~~~~~i~n~~~~~~~---~ig~W~~~--~~---~~i~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~P~~~~~~~~~---- 236 (656)
T KOG1052|consen 169 YFKYEILNLNGSGER---RIGYWYPR--GG---ENISWPGKDYFVPKGWFFPTNGKPLRVGVVTEPPFVDLVEDLA---- 236 (656)
T ss_pred cceEEEEEecCcCce---eEEEecCC--CC---ceeeccCCcccCcCCccccCCCceEEEEEeccCCceeeeeccc----
Confidence 346788888777665 69999983 34 45668887765555433 48999999999999999876431
Q ss_pred ccCcCceeeeecCCCCcchhhhhhccCCCccccccccchHHHHHHHHHHhCCeEEEEEecCCCCCCcCC
Q psy13438 85 CNMNRGVICRVAGDADMDKIDVAMAHHNESFYQCCSGFCIDLLGKFAEELGFTYELVRVEDGKWGTQED 153 (154)
Q Consensus 85 C~~~~~v~c~~~~~~~~~~~~~~~~~gn~~~~~Cc~G~cIDLL~~La~~l~F~Yel~lv~DGkyGs~~~ 153 (154)
+. .+++++ +||||||+++|++.++|+|+++.++|++ |.+++
T Consensus 237 ~~-----------------------~~~~~~----~G~~idll~~l~~~l~f~~~~~~~~~~~-g~~~~ 277 (656)
T KOG1052|consen 237 IL-----------------------NGNDRI----EGFEIDLLQALAKRLNFSYEIIFVPDGS-GSRDP 277 (656)
T ss_pred cc-----------------------CCCCcc----ceEEehHHHHHHHhCCCceEEEEcCCCC-CCCCC
Confidence 10 246667 8999999999999999999999999999 88765
No 6
>PRK15007 putative ABC transporter arginine-biding protein; Provisional
Probab=95.67 E-value=0.029 Score=44.12 Aligned_cols=47 Identities=17% Similarity=0.306 Sum_probs=37.4
Q ss_pred CceEEEEee-ccCCeEEEcCCCCCCCcccCcCceeeeecCCCCcchhhhhhccCCCccccccccchHHHHHHHHHHhCCe
Q psy13438 59 KFHLKITFL-EEAPYIQMSPPDPVTGKCNMNRGVICRVAGDADMDKIDVAMAHHNESFYQCCSGFCIDLLGKFAEELGFT 137 (154)
Q Consensus 59 ~~~LrVvTi-~e~PfV~~~~~~~~~g~C~~~~~v~c~~~~~~~~~~~~~~~~~gn~~~~~Cc~G~cIDLL~~La~~l~F~ 137 (154)
...|+|.+. .-+||.+..+ +..+ .||.+||+++|++.+|+.
T Consensus 20 ~~~l~v~~~~~~~P~~~~~~----------------------------------~g~~----~G~~~dl~~~i~~~lg~~ 61 (243)
T PRK15007 20 AETIRFATEASYPPFESIDA----------------------------------NNQI----VGFDVDLAQALCKEIDAT 61 (243)
T ss_pred CCcEEEEeCCCCCCceeeCC----------------------------------CCCE----EeeeHHHHHHHHHHhCCc
Confidence 468999987 6889997642 1234 799999999999999999
Q ss_pred EEEEEe
Q psy13438 138 YELVRV 143 (154)
Q Consensus 138 Yel~lv 143 (154)
+++...
T Consensus 62 ~~~~~~ 67 (243)
T PRK15007 62 CTFSNQ 67 (243)
T ss_pred EEEEeC
Confidence 998643
No 7
>PF00497 SBP_bac_3: Bacterial extracellular solute-binding proteins, family 3; InterPro: IPR001638 Bacterial high affinity transport systems are involved in active transport of solutes across the cytoplasmic membrane. The protein components of these traffic systems include one or two transmembrane protein components, one or two membrane-associated ATP-binding proteins (ABC transporters; see IPR003439 from INTERPRO) and a high affinity periplasmic solute-binding protein. The latter are thought to bind the substrate in the vicinity of the inner membrane, and to transfer it to a complex of inner membrane proteins for concentration into the cytoplasm. In Gram-positive bacteria which are surrounded by a single membrane and have therefore no periplasmic region, the equivalent proteins are bound to the membrane via an N-terminal lipid anchor. These homologue proteins do not play an integral role in the transport process per se, but probably serve as receptors to trigger or initiate translocation of the solute throught the membrane by binding to external sites of the integral membrane proteins of the efflux system. In addition, at least some solute-binding proteins function in the initiation of sensory transduction pathways. On the basis of sequence similarities, the vast majority of these solute-binding proteins can be grouped [] into eight families or clusters, which generally correlate with the nature of the solute bound. Family 3 groups together specific amino acids and opine-binding periplasmic proteins and a periplasmic homologue with catalytic activity.; GO: 0005215 transporter activity, 0006810 transport, 0030288 outer membrane-bounded periplasmic space; PDB: 3N26_A 3QAX_A 3I6V_A 2VHA_B 2IA4_B 2Q89_A 2Q88_A 2YJP_C 1II5_A 1IIW_A ....
Probab=95.63 E-value=0.024 Score=42.89 Aligned_cols=24 Identities=42% Similarity=0.649 Sum_probs=22.5
Q ss_pred ccchHHHHHHHHHHhCCeEEEEEe
Q psy13438 120 SGFCIDLLGKFAEELGFTYELVRV 143 (154)
Q Consensus 120 ~G~cIDLL~~La~~l~F~Yel~lv 143 (154)
.|+.+||++++++.+|+++++...
T Consensus 22 ~G~~~dl~~~i~~~~g~~~~~~~~ 45 (225)
T PF00497_consen 22 SGIDVDLLRAIAKRLGIKIEFVPM 45 (225)
T ss_dssp ESHHHHHHHHHHHHHTCEEEEEEE
T ss_pred EEEhHHHHHHHHhhcccccceeec
Confidence 799999999999999999999865
No 8
>TIGR01096 3A0103s03R lysine-arginine-ornithine-binding periplasmic protein.
Probab=95.17 E-value=0.062 Score=42.27 Aligned_cols=46 Identities=17% Similarity=0.260 Sum_probs=36.6
Q ss_pred ceEEEEee-ccCCeEEEcCCCCCCCcccCcCceeeeecCCCCcchhhhhhccCCCccccccccchHHHHHHHHHHhCCeE
Q psy13438 60 FHLKITFL-EEAPYIQMSPPDPVTGKCNMNRGVICRVAGDADMDKIDVAMAHHNESFYQCCSGFCIDLLGKFAEELGFTY 138 (154)
Q Consensus 60 ~~LrVvTi-~e~PfV~~~~~~~~~g~C~~~~~v~c~~~~~~~~~~~~~~~~~gn~~~~~Cc~G~cIDLL~~La~~l~F~Y 138 (154)
.+|+|++- ..+||.+..+ +... .||.+||++++++.+|.++
T Consensus 24 ~~l~v~~~~~~~P~~~~~~----------------------------------~g~~----~G~~~dl~~~i~~~lg~~~ 65 (250)
T TIGR01096 24 GSVRIGTETGYPPFESKDA----------------------------------NGKL----VGFDVDLAKALCKRMKAKC 65 (250)
T ss_pred CeEEEEECCCCCCceEECC----------------------------------CCCE----EeehHHHHHHHHHHhCCeE
Confidence 68999885 5689998642 1233 7999999999999999999
Q ss_pred EEEEe
Q psy13438 139 ELVRV 143 (154)
Q Consensus 139 el~lv 143 (154)
+++..
T Consensus 66 ~~~~~ 70 (250)
T TIGR01096 66 KFVEQ 70 (250)
T ss_pred EEEeC
Confidence 98653
No 9
>PRK15010 ABC transporter lysine/arginine/ornithine binding periplasmic protein; Provisional
Probab=95.12 E-value=0.062 Score=43.22 Aligned_cols=48 Identities=21% Similarity=0.256 Sum_probs=38.2
Q ss_pred CCceEEEEee-ccCCeEEEcCCCCCCCcccCcCceeeeecCCCCcchhhhhhccCCCccccccccchHHHHHHHHHHhCC
Q psy13438 58 EKFHLKITFL-EEAPYIQMSPPDPVTGKCNMNRGVICRVAGDADMDKIDVAMAHHNESFYQCCSGFCIDLLGKFAEELGF 136 (154)
Q Consensus 58 ~~~~LrVvTi-~e~PfV~~~~~~~~~g~C~~~~~v~c~~~~~~~~~~~~~~~~~gn~~~~~Cc~G~cIDLL~~La~~l~F 136 (154)
...+|+|++. ..+||.+..+ |..+ .||.+||++++++.+|.
T Consensus 24 ~~~~l~v~~~~~~pPf~~~~~----------------------------------~g~~----~G~~vdl~~~ia~~lg~ 65 (260)
T PRK15010 24 LPETVRIGTDTTYAPFSSKDA----------------------------------KGDF----VGFDIDLGNEMCKRMQV 65 (260)
T ss_pred cCCeEEEEecCCcCCceeECC----------------------------------CCCE----EeeeHHHHHHHHHHhCC
Confidence 4578999997 4799998642 1223 79999999999999999
Q ss_pred eEEEEEe
Q psy13438 137 TYELVRV 143 (154)
Q Consensus 137 ~Yel~lv 143 (154)
++++...
T Consensus 66 ~~~~~~~ 72 (260)
T PRK15010 66 KCTWVAS 72 (260)
T ss_pred ceEEEeC
Confidence 9998754
No 10
>PRK15437 histidine ABC transporter substrate-binding protein HisJ; Provisional
Probab=94.85 E-value=0.067 Score=42.98 Aligned_cols=49 Identities=18% Similarity=0.257 Sum_probs=38.3
Q ss_pred CCceEEEEeec-cCCeEEEcCCCCCCCcccCcCceeeeecCCCCcchhhhhhccCCCccccccccchHHHHHHHHHHhCC
Q psy13438 58 EKFHLKITFLE-EAPYIQMSPPDPVTGKCNMNRGVICRVAGDADMDKIDVAMAHHNESFYQCCSGFCIDLLGKFAEELGF 136 (154)
Q Consensus 58 ~~~~LrVvTi~-e~PfV~~~~~~~~~g~C~~~~~v~c~~~~~~~~~~~~~~~~~gn~~~~~Cc~G~cIDLL~~La~~l~F 136 (154)
....|+|++.. .+||.+..+ +... .||.+|+++++++.++.
T Consensus 24 ~~~~l~v~~~~~~~P~~~~~~----------------------------------~g~~----~G~~vdi~~~ia~~lg~ 65 (259)
T PRK15437 24 IPQNIRIGTDPTYAPFESKNS----------------------------------QGEL----VGFDIDLAKELCKRINT 65 (259)
T ss_pred cCCeEEEEeCCCCCCcceeCC----------------------------------CCCE----EeeeHHHHHHHHHHcCC
Confidence 34789999874 799988642 1223 79999999999999999
Q ss_pred eEEEEEec
Q psy13438 137 TYELVRVE 144 (154)
Q Consensus 137 ~Yel~lv~ 144 (154)
++++..++
T Consensus 66 ~i~~~~~p 73 (259)
T PRK15437 66 QCTFVENP 73 (259)
T ss_pred ceEEEeCC
Confidence 99987543
No 11
>PRK09495 glnH glutamine ABC transporter periplasmic protein; Reviewed
Probab=93.71 E-value=0.17 Score=40.21 Aligned_cols=24 Identities=42% Similarity=0.630 Sum_probs=21.6
Q ss_pred ccchHHHHHHHHHHhCCeEEEEEe
Q psy13438 120 SGFCIDLLGKFAEELGFTYELVRV 143 (154)
Q Consensus 120 ~G~cIDLL~~La~~l~F~Yel~lv 143 (154)
.||.+||++++++.+|.++++...
T Consensus 47 ~G~~vdl~~~ia~~lg~~~~~~~~ 70 (247)
T PRK09495 47 VGFDIDLWAAIAKELKLDYTLKPM 70 (247)
T ss_pred EEEeHHHHHHHHHHhCCceEEEeC
Confidence 799999999999999998888653
No 12
>TIGR02995 ectoine_ehuB ectoine/hydroxyectoine ABC transporter solute-binding protein. Members of this family are the extracellular solute-binding proteins of ABC transporters that closely resemble amino acid transporters. The member from Sinorhizobium meliloti is involved in ectoine uptake, both for osmoprotection and for catabolism. All other members of the seed alignment are found associated with ectoine catabolic genes.
Probab=93.09 E-value=0.11 Score=42.19 Aligned_cols=50 Identities=18% Similarity=0.262 Sum_probs=37.9
Q ss_pred CCCCceEEEEeeccCCeEEEcCCCCCCCcccCcCceeeeecCCCCcchhhhhhccCCCccccccccchHHHHHHHHHHhC
Q psy13438 56 VPEKFHLKITFLEEAPYIQMSPPDPVTGKCNMNRGVICRVAGDADMDKIDVAMAHHNESFYQCCSGFCIDLLGKFAEELG 135 (154)
Q Consensus 56 ~~~~~~LrVvTi~e~PfV~~~~~~~~~g~C~~~~~v~c~~~~~~~~~~~~~~~~~gn~~~~~Cc~G~cIDLL~~La~~l~ 135 (154)
.....+|+|.+...+||.+..+. ... .||.+||++++++.+|
T Consensus 29 i~~~~~l~v~~~~~pP~~~~~~~----------------------------------g~~----~G~~~dl~~~i~~~lg 70 (275)
T TIGR02995 29 LKEQGFARIAIANEPPFTYVGAD----------------------------------GKV----SGAAPDVARAIFKRLG 70 (275)
T ss_pred HHhCCcEEEEccCCCCceeECCC----------------------------------Cce----ecchHHHHHHHHHHhC
Confidence 34567899999999999885421 122 6999999999999999
Q ss_pred Ce-EEEEEe
Q psy13438 136 FT-YELVRV 143 (154)
Q Consensus 136 F~-Yel~lv 143 (154)
.+ +++..+
T Consensus 71 ~~~~~~~~~ 79 (275)
T TIGR02995 71 IADVNASIT 79 (275)
T ss_pred CCceeeccC
Confidence 86 455443
No 13
>PRK10859 membrane-bound lytic transglycosylase F; Provisional
Probab=92.72 E-value=0.33 Score=43.32 Aligned_cols=25 Identities=32% Similarity=0.562 Sum_probs=22.4
Q ss_pred ccchHHHHHHHHHHhCCeEEEEEec
Q psy13438 120 SGFCIDLLGKFAEELGFTYELVRVE 144 (154)
Q Consensus 120 ~G~cIDLL~~La~~l~F~Yel~lv~ 144 (154)
.||.+||++++++.+|.++++..++
T Consensus 64 ~G~~~DLl~~ia~~LGv~~e~v~~~ 88 (482)
T PRK10859 64 TGFEYELAKRFADYLGVKLEIKVRD 88 (482)
T ss_pred ccHHHHHHHHHHHHhCCcEEEEecC
Confidence 6999999999999999999988543
No 14
>PRK11260 cystine transporter subunit; Provisional
Probab=92.43 E-value=0.43 Score=38.39 Aligned_cols=50 Identities=18% Similarity=0.306 Sum_probs=38.3
Q ss_pred CCCceEEEEeec-cCCeEEEcCCCCCCCcccCcCceeeeecCCCCcchhhhhhccCCCccccccccchHHHHHHHHHHhC
Q psy13438 57 PEKFHLKITFLE-EAPYIQMSPPDPVTGKCNMNRGVICRVAGDADMDKIDVAMAHHNESFYQCCSGFCIDLLGKFAEELG 135 (154)
Q Consensus 57 ~~~~~LrVvTi~-e~PfV~~~~~~~~~g~C~~~~~v~c~~~~~~~~~~~~~~~~~gn~~~~~Cc~G~cIDLL~~La~~l~ 135 (154)
..+++++|.+.. .+||.+..+ +... .||-+|++++|++.+|
T Consensus 38 ~~~~~l~v~~~~~~~P~~~~~~----------------------------------~g~~----~G~~~dl~~~i~~~lg 79 (266)
T PRK11260 38 KERGTLLVGLEGTYPPFSFQGE----------------------------------DGKL----TGFEVEFAEALAKHLG 79 (266)
T ss_pred hcCCeEEEEeCCCcCCceEECC----------------------------------CCCE----EEehHHHHHHHHHHHC
Confidence 466899998764 689986432 1123 7999999999999999
Q ss_pred CeEEEEEec
Q psy13438 136 FTYELVRVE 144 (154)
Q Consensus 136 F~Yel~lv~ 144 (154)
.++++...+
T Consensus 80 ~~~e~~~~~ 88 (266)
T PRK11260 80 VKASLKPTK 88 (266)
T ss_pred CeEEEEeCC
Confidence 999997643
No 15
>PRK10797 glutamate and aspartate transporter subunit; Provisional
Probab=91.46 E-value=0.52 Score=39.35 Aligned_cols=48 Identities=15% Similarity=0.298 Sum_probs=33.0
Q ss_pred CCceEEEEeec-cCCeEEEcCCCCCCCcccCcCceeeeecCCCCcchhhhhhccCCCccccccccchHHHHHHHHH----
Q psy13438 58 EKFHLKITFLE-EAPYIQMSPPDPVTGKCNMNRGVICRVAGDADMDKIDVAMAHHNESFYQCCSGFCIDLLGKFAE---- 132 (154)
Q Consensus 58 ~~~~LrVvTi~-e~PfV~~~~~~~~~g~C~~~~~v~c~~~~~~~~~~~~~~~~~gn~~~~~Cc~G~cIDLL~~La~---- 132 (154)
....|+|++.. .+||.+..+. ... .||.+||+++|++
T Consensus 38 ~~g~L~Vg~~~~~pP~~f~~~~----------------------------------g~~----~G~didl~~~ia~~l~~ 79 (302)
T PRK10797 38 KNGVIVVGHRESSVPFSYYDNQ----------------------------------QKV----VGYSQDYSNAIVEAVKK 79 (302)
T ss_pred hCCeEEEEEcCCCCCcceECCC----------------------------------CCE----eeecHHHHHHHHHHHHH
Confidence 45789999875 6799876321 123 7999999888876
Q ss_pred Hh---CCeEEEEEe
Q psy13438 133 EL---GFTYELVRV 143 (154)
Q Consensus 133 ~l---~F~Yel~lv 143 (154)
.+ +.++++...
T Consensus 80 ~lg~~~~~~~~v~~ 93 (302)
T PRK10797 80 KLNKPDLQVKLIPI 93 (302)
T ss_pred hhCCCCceEEEEEc
Confidence 44 366666554
No 16
>smart00062 PBPb Bacterial periplasmic substrate-binding proteins. bacterial proteins, eukaryotic ones are in PBPe
Probab=91.26 E-value=0.72 Score=33.53 Aligned_cols=24 Identities=46% Similarity=0.744 Sum_probs=22.1
Q ss_pred ccchHHHHHHHHHHhCCeEEEEEe
Q psy13438 120 SGFCIDLLGKFAEELGFTYELVRV 143 (154)
Q Consensus 120 ~G~cIDLL~~La~~l~F~Yel~lv 143 (154)
.|+..|+++++++.+++++++...
T Consensus 23 ~G~~~~~~~~~~~~~g~~~~~~~~ 46 (219)
T smart00062 23 TGFDVDLAKAIAKELGLKVEFVEV 46 (219)
T ss_pred ccchHHHHHHHHHHhCCeEEEEec
Confidence 799999999999999999988765
No 17
>TIGR03871 ABC_peri_MoxJ_2 quinoprotein dehydrogenase-associated probable ABC transporter substrate-binding protein. This protein family, a sister family to TIGR03870, is found more broadly. It occurs a range of PQQ-biosynthesizing species, not just in known methanotrophs. Interpretation of evidence by homology and by direct experimental work suggest two different roles. By homology, this family appears to be the periplasmic substrate-binding protein of an ABC transport family. However, mutational studies and direct characterization for some sequences related to this family suggests this family may act as a maturation chaperone or additional subunit of a methanol dehydrogenase-like enzyme.
Probab=91.21 E-value=0.36 Score=37.61 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=22.6
Q ss_pred ccchHHHHHHHHHHhCCeEEEEEec
Q psy13438 120 SGFCIDLLGKFAEELGFTYELVRVE 144 (154)
Q Consensus 120 ~G~cIDLL~~La~~l~F~Yel~lv~ 144 (154)
.||++||++++++.+|.++++...+
T Consensus 19 ~G~~~el~~~i~~~~g~~i~~~~~~ 43 (232)
T TIGR03871 19 EGFENKIAQLLADDLGLPLEYTWFP 43 (232)
T ss_pred CchHHHHHHHHHHHcCCceEEEecC
Confidence 6999999999999999999887655
No 18
>TIGR03870 ABC_MoxJ methanol oxidation system protein MoxJ. This predicted periplasmic protein, called MoxJ or MxaJ, is required for methanol oxidation in Methylobacterium extorquens. Two differing lines of evidence suggest two different roles. Forming one view, homology suggests it is the substrate-binding protein of an ABC transporter associated with methanol oxidation. The gene, furthermore, is found regular in genomes with, and only two or three genes away from, a corresponding permease and ATP-binding cassette gene pair. The other view is that this protein is an accessory factor or additional subunit of methanol dehydrogenase itself. Mutational studies show a dependence on this protein for expression of the PQQ-dependent, two-subunit methanol dehydrogenase (MxaF and MxaI) in Methylobacterium extorquens, as if it is a chaperone for enzyme assembly or a third subunit. A homologous N-terminal sequence was found in Paracoccus denitrificans as a 32Kd third subunit. This protein may, in
Probab=90.43 E-value=0.47 Score=38.03 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=22.8
Q ss_pred ccchHHHHHHHHHHhCCeEEEEEec
Q psy13438 120 SGFCIDLLGKFAEELGFTYELVRVE 144 (154)
Q Consensus 120 ~G~cIDLL~~La~~l~F~Yel~lv~ 144 (154)
.||-+||+++|++++|.++++...+
T Consensus 19 ~Gfdvdl~~~ia~~lg~~~~~~~~~ 43 (246)
T TIGR03870 19 SGFENKIAAALAAAMGRKVVFVWLA 43 (246)
T ss_pred CcchHHHHHHHHHHhCCCeEEEEec
Confidence 5999999999999999999998665
No 19
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=89.73 E-value=0.75 Score=44.79 Aligned_cols=48 Identities=23% Similarity=0.296 Sum_probs=37.1
Q ss_pred CceEEEEeecc-CCeEEEcCCCCCCCcccCcCceeeeecCCCCcchhhhhhccCCCccccccccchHHHHHHHHHHhCCe
Q psy13438 59 KFHLKITFLEE-APYIQMSPPDPVTGKCNMNRGVICRVAGDADMDKIDVAMAHHNESFYQCCSGFCIDLLGKFAEELGFT 137 (154)
Q Consensus 59 ~~~LrVvTi~e-~PfV~~~~~~~~~g~C~~~~~v~c~~~~~~~~~~~~~~~~~gn~~~~~Cc~G~cIDLL~~La~~l~F~ 137 (154)
...++|++-.. +||.+..+ +... .||.+||+++|++.+|.+
T Consensus 301 ~~~l~v~~~~~~pP~~~~d~----------------------------------~g~~----~G~~~Dll~~i~~~~g~~ 342 (1197)
T PRK09959 301 HPDLKVLENPYSPPYSMTDE----------------------------------NGSV----RGVMGDILNIITLQTGLN 342 (1197)
T ss_pred CCceEEEcCCCCCCeeEECC----------------------------------CCcE----eeehHHHHHHHHHHHCCe
Confidence 56888887664 89998742 1223 799999999999999999
Q ss_pred EEEEEec
Q psy13438 138 YELVRVE 144 (154)
Q Consensus 138 Yel~lv~ 144 (154)
|++....
T Consensus 343 ~~~v~~~ 349 (1197)
T PRK09959 343 FSPITVS 349 (1197)
T ss_pred EEEEecC
Confidence 8887543
No 20
>TIGR02285 conserved hypothetical protein. Members of this family are found in several Proteobacteria, including Pseudomonas putida KT2440, Bdellovibrio bacteriovorus HD100 (three members), Aeromonas hydrophila, and Chromobacterium violaceum ATCC 12472. The function is unknown.
Probab=87.08 E-value=1.9 Score=34.71 Aligned_cols=47 Identities=21% Similarity=0.274 Sum_probs=36.1
Q ss_pred CceEEEEeeccCCeEEEcCCCCCCCcccCcCceeeeecCCCCcchhhhhhccCCCccccccccchHHHHHHHHHHh-CCe
Q psy13438 59 KFHLKITFLEEAPYIQMSPPDPVTGKCNMNRGVICRVAGDADMDKIDVAMAHHNESFYQCCSGFCIDLLGKFAEEL-GFT 137 (154)
Q Consensus 59 ~~~LrVvTi~e~PfV~~~~~~~~~g~C~~~~~v~c~~~~~~~~~~~~~~~~~gn~~~~~Cc~G~cIDLL~~La~~l-~F~ 137 (154)
..++++++-.-+||.+.... ... .|+.+|+++++++.+ ++.
T Consensus 17 ~~~l~~~~~~~pPf~~~~~~----------------------------------~~~----~G~~~~i~~~i~~~~~~~~ 58 (268)
T TIGR02285 17 KEAITWIVNDFPPFFIFSGP----------------------------------SKG----RGVFDVILQEIRRALPQYE 58 (268)
T ss_pred cceeEEEecccCCeeEeCCC----------------------------------CCC----CChHHHHHHHHHHHcCCCc
Confidence 46999999999999986321 112 698899999999998 888
Q ss_pred EEEEEe
Q psy13438 138 YELVRV 143 (154)
Q Consensus 138 Yel~lv 143 (154)
+++...
T Consensus 59 ~~~~~~ 64 (268)
T TIGR02285 59 HRFVRV 64 (268)
T ss_pred eeEEEC
Confidence 777653
No 21
>PRK11917 bifunctional adhesin/ABC transporter aspartate/glutamate-binding protein; Reviewed
Probab=86.40 E-value=1.7 Score=35.24 Aligned_cols=48 Identities=23% Similarity=0.308 Sum_probs=33.7
Q ss_pred CCCceEEEEeec-cCCeEEEcCCCCCCCcccCcCceeeeecCCCCcchhhhhhccCCCccccccccchHHHHHHHHHHh-
Q psy13438 57 PEKFHLKITFLE-EAPYIQMSPPDPVTGKCNMNRGVICRVAGDADMDKIDVAMAHHNESFYQCCSGFCIDLLGKFAEEL- 134 (154)
Q Consensus 57 ~~~~~LrVvTi~-e~PfV~~~~~~~~~g~C~~~~~v~c~~~~~~~~~~~~~~~~~gn~~~~~Cc~G~cIDLL~~La~~l- 134 (154)
.....|+|++.. .+||.+.... +... .||.+||++++++.+
T Consensus 35 ~~~g~l~vg~~~~~pP~~~~~~~---------------------------------~g~~----~G~~vdl~~~ia~~ll 77 (259)
T PRK11917 35 KSKGQLIVGVKNDVPHYALLDQA---------------------------------TGEI----KGFEIDVAKLLAKSIL 77 (259)
T ss_pred HhCCEEEEEECCCCCCceeeeCC---------------------------------CCce----eEeeHHHHHHHHHHhc
Confidence 356799999874 6788875321 1223 799999999999995
Q ss_pred CC--eEEEE
Q psy13438 135 GF--TYELV 141 (154)
Q Consensus 135 ~F--~Yel~ 141 (154)
|- .+++.
T Consensus 78 g~~~~~~~~ 86 (259)
T PRK11917 78 GDDKKIKLV 86 (259)
T ss_pred CCCccEEEE
Confidence 63 34444
No 22
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=84.06 E-value=2.2 Score=41.67 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=22.3
Q ss_pred ccchHHHHHHHHHHhCCeEEEEEe
Q psy13438 120 SGFCIDLLGKFAEELGFTYELVRV 143 (154)
Q Consensus 120 ~G~cIDLL~~La~~l~F~Yel~lv 143 (154)
.||-+|+++.||+.+|..+++...
T Consensus 80 ~G~~~D~l~~ia~~lG~~~e~v~~ 103 (1197)
T PRK09959 80 RGINADYLNLLKRALNIKLTLREY 103 (1197)
T ss_pred ceecHHHHHHHHHhcCCceEEEeC
Confidence 799999999999999999999764
No 23
>cd00134 PBPb Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of substrates, such as, amino acids, peptides, sugars, vitamins and inorganic ions. PBPs have two cell-membrane translocation functions: bind substrate, and interact with the membrane bound complex. A diverse group of periplasmic transport receptors for lysine/arginine/ornithine (LAO), glutamine, histidine, sulfate, phosphate, molybdate, and methanol are included in the PBPb CD.
Probab=74.85 E-value=7.3 Score=28.27 Aligned_cols=25 Identities=40% Similarity=0.693 Sum_probs=22.3
Q ss_pred ccchHHHHHHHHHHhCCeEEEEEec
Q psy13438 120 SGFCIDLLGKFAEELGFTYELVRVE 144 (154)
Q Consensus 120 ~G~cIDLL~~La~~l~F~Yel~lv~ 144 (154)
.|++.|+++.+++.++.++++...+
T Consensus 22 ~G~~~~~~~~~~~~~g~~~~~~~~~ 46 (218)
T cd00134 22 TGFDVDLAKAIAKELGVKVKFVEVD 46 (218)
T ss_pred EeeeHHHHHHHHHHhCCeEEEEeCC
Confidence 7999999999999999888887654
No 24
>COG0834 HisJ ABC-type amino acid transport/signal transduction systems, periplasmic component/domain [Amino acid transport and metabolism / Signal transduction mechanisms]
Probab=39.77 E-value=65 Score=25.07 Aligned_cols=23 Identities=39% Similarity=0.521 Sum_probs=18.8
Q ss_pred ccchHHHHHHHHHHhCCe--EEEEE
Q psy13438 120 SGFCIDLLGKFAEELGFT--YELVR 142 (154)
Q Consensus 120 ~G~cIDLL~~La~~l~F~--Yel~l 142 (154)
.||.+||++++++.++-. .++..
T Consensus 59 ~G~dvdl~~~ia~~l~~~~~~~~~~ 83 (275)
T COG0834 59 VGFDVDLAKAIAKRLGGDKKVEFVP 83 (275)
T ss_pred EeeeHHHHHHHHHHhCCcceeEEec
Confidence 799999999999998875 44443
No 25
>KOG3798|consensus
Probab=36.07 E-value=28 Score=29.83 Aligned_cols=28 Identities=25% Similarity=0.631 Sum_probs=25.1
Q ss_pred ccchHHHHHHHHHHhCCeEEEEEecCCCC
Q psy13438 120 SGFCIDLLGKFAEELGFTYELVRVEDGKW 148 (154)
Q Consensus 120 ~G~cIDLL~~La~~l~F~Yel~lv~DGky 148 (154)
+|||-|+.++|.+++|= |+|..++=|.|
T Consensus 239 TGyc~~~F~~IgerfGp-fdLAaiPiGaY 266 (343)
T KOG3798|consen 239 TGYCDGEFKKIGERFGP-FDLAAIPIGAY 266 (343)
T ss_pred CCcccHHHHHHHHhcCC-cceeecccccc
Confidence 79999999999999998 99999886655
No 26
>PF11410 Antifungal_pept: Antifungal peptide; InterPro: IPR024206 This peptide has six cysteines involved in three disulphide bonds. The presence of a 'disulphide through disulphide knot' structurally defines this protein as a knottin: the peptide contains a global fold which involves a cysteine-knotted three-stranded antiparallel beta-sheet along with a flexible loop and four beta-reverse turns. It also has an amphiphilic character which is the main structural basis of its biological function []. The peptides in this entry belong to the AMP family. ; PDB: 1DKC_A 1Q3J_A.
Probab=32.35 E-value=27 Score=20.80 Aligned_cols=11 Identities=64% Similarity=1.621 Sum_probs=6.1
Q ss_pred ccccccccchH
Q psy13438 114 SFYQCCSGFCI 124 (154)
Q Consensus 114 ~~~~Cc~G~cI 124 (154)
....||+|||.
T Consensus 13 s~g~CcSg~C~ 23 (36)
T PF11410_consen 13 SMGNCCSGFCL 23 (36)
T ss_dssp SS---TTSEEE
T ss_pred CCcccccceeE
Confidence 44679999994
No 27
>PF10050 DUF2284: Predicted metal-binding protein (DUF2284); InterPro: IPR019271 This entry represents a family of predicted metal-binding bacterial and archaeal proteins with no known function.
Probab=25.88 E-value=58 Score=24.99 Aligned_cols=20 Identities=35% Similarity=0.446 Sum_probs=15.7
Q ss_pred ccchHHHHHHHHHHhCCeEEE
Q psy13438 120 SGFCIDLLGKFAEELGFTYEL 140 (154)
Q Consensus 120 ~G~cIDLL~~La~~l~F~Yel 140 (154)
+++.||+ .++++.+|..|..
T Consensus 131 Ea~GIdV-~~t~~~~G~~~~~ 150 (166)
T PF10050_consen 131 EAYGIDV-FKTAEKAGIPLEW 150 (166)
T ss_pred HHhCeeH-HHHHHHcCCeEEe
Confidence 8999999 6777777776654
No 28
>PF13744 HTH_37: Helix-turn-helix domain; PDB: 2A6C_B 2O38_A.
Probab=25.67 E-value=1.1e+02 Score=20.37 Aligned_cols=23 Identities=35% Similarity=0.517 Sum_probs=19.4
Q ss_pred ccchHHHHHHHHHHhCCeEEEEE
Q psy13438 120 SGFCIDLLGKFAEELGFTYELVR 142 (154)
Q Consensus 120 ~G~cIDLL~~La~~l~F~Yel~l 142 (154)
.++.+|-|..++..+|++.++.+
T Consensus 57 ~~~sl~~L~~~l~aLG~~v~i~v 79 (80)
T PF13744_consen 57 DDFSLDTLLRYLEALGGRVEIVV 79 (80)
T ss_dssp CC--HHHHHHHHHHTTEEEEEEE
T ss_pred cCCCHHHHHHHHHHcCCeEEEee
Confidence 68999999999999999999875
No 29
>PF04807 Gemini_AC4_5: Geminivirus AC4/5 conserved region; InterPro: IPR006892 This entry represents a conserved domain found in Gemini virus AC4 and AC5 proteins [].
Probab=25.53 E-value=57 Score=19.05 Aligned_cols=22 Identities=14% Similarity=0.295 Sum_probs=19.2
Q ss_pred cccccchHHHHHHHHHHhCCeE
Q psy13438 117 QCCSGFCIDLLGKFAEELGFTY 138 (154)
Q Consensus 117 ~Cc~G~cIDLL~~La~~l~F~Y 138 (154)
.||.||.+-=++-|++.+.|..
T Consensus 6 ~~~~~liVkHvk~l~KIl~~~~ 27 (33)
T PF04807_consen 6 SSSTGLIVKHVKHLTKILWFIC 27 (33)
T ss_pred cCcccchhHHHHHHHHHhhhcc
Confidence 4779999999999999998864
Done!