Query psy13438
Match_columns 154
No_of_seqs 125 out of 593
Neff 6.0
Searched_HMMs 29240
Date Fri Aug 16 19:25:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13438.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13438hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2rc8_A Glutamate [NMDA] recept 99.5 1.9E-13 6.4E-18 110.1 8.9 92 58-152 3-101 (294)
2 1pb7_A N-methyl-D-aspartate re 99.4 2.1E-13 7.3E-18 110.0 7.1 86 59-152 3-96 (292)
3 2a5s_A N-methyl-D-aspartate re 99.3 2.4E-12 8.1E-17 103.1 7.4 86 58-151 3-89 (284)
4 3kg2_A Glutamate receptor 2; I 99.2 4.3E-11 1.5E-15 107.9 10.0 100 8-152 346-445 (823)
5 3g3k_A Glutamate receptor, ion 98.4 5E-07 1.7E-11 69.7 6.7 64 58-152 2-65 (259)
6 1yae_A Glutamate receptor, ion 98.4 1E-06 3.4E-11 70.8 7.6 66 56-152 9-74 (312)
7 2v3u_A Glutamate receptor delt 98.2 3.3E-06 1.1E-10 64.8 6.9 60 59-151 2-61 (265)
8 1mqi_A Glutamate receptor 2; G 98.0 7.9E-06 2.7E-10 63.0 6.3 63 59-152 3-65 (263)
9 4gvo_A LMO2349 protein; struct 96.6 0.0023 7.9E-08 48.9 5.1 50 57-144 6-57 (243)
10 3k4u_A Binding component of AB 96.5 0.0041 1.4E-07 46.9 5.7 49 58-144 3-52 (245)
11 3i6v_A Periplasmic His/Glu/Gln 96.5 0.0038 1.3E-07 47.1 5.4 48 59-144 4-52 (232)
12 4h5g_A Amino acid ABC superfam 96.5 0.0021 7.3E-08 49.1 3.8 52 58-144 10-62 (243)
13 3kbr_A Cyclohexadienyl dehydra 96.3 0.0088 3E-07 44.6 6.1 49 58-144 13-62 (239)
14 3mpk_A Virulence sensor protei 96.2 0.01 3.5E-07 45.7 6.5 49 58-144 30-79 (267)
15 3kzg_A Arginine 3RD transport 96.2 0.011 3.8E-07 44.2 6.4 48 59-144 2-51 (237)
16 3tql_A Arginine-binding protei 96.2 0.0084 2.9E-07 43.9 5.6 46 60-143 2-48 (227)
17 3del_B Arginine binding protei 96.1 0.011 3.7E-07 44.2 5.8 48 58-143 9-57 (242)
18 1ii5_A SLR1257 protein; membra 96.0 0.0095 3.3E-07 43.9 5.1 49 59-143 3-51 (233)
19 3hv1_A Polar amino acid ABC up 96.0 0.011 3.9E-07 45.1 5.6 49 58-144 19-68 (268)
20 4f3p_A Glutamine-binding perip 95.9 0.011 3.8E-07 44.7 5.3 48 58-144 22-70 (249)
21 1lst_A Lysine, arginine, ornit 95.8 0.019 6.5E-07 42.7 6.0 24 120-143 27-50 (239)
22 2pyy_A Ionotropic glutamate re 95.7 0.011 3.9E-07 43.2 4.4 47 60-145 3-49 (228)
23 4dz1_A DALS D-alanine transpor 95.6 0.024 8.3E-07 43.3 6.2 48 58-143 27-75 (259)
24 2q88_A EHUB, putative ABC tran 95.6 0.019 6.5E-07 43.3 5.5 49 58-144 11-60 (257)
25 3h7m_A Sensor protein; histidi 95.5 0.03 1E-06 41.2 6.3 49 58-144 9-58 (234)
26 2y7i_A STM4351; arginine-bindi 95.5 0.036 1.2E-06 40.7 6.4 48 58-143 4-52 (229)
27 4eq9_A ABC transporter substra 95.4 0.013 4.4E-07 43.7 3.7 47 58-143 6-54 (246)
28 1wdn_A GLNBP, glutamine bindin 95.3 0.026 8.8E-07 41.2 5.2 24 120-143 25-48 (226)
29 2iee_A ORF2, probable ABC tran 95.2 0.03 1E-06 43.2 5.6 52 58-144 19-71 (271)
30 2pvu_A ARTJ; basic amino acid 94.6 0.052 1.8E-06 41.7 5.4 49 57-144 39-88 (272)
31 2yln_A Putative ABC transporte 93.2 0.19 6.6E-06 39.0 6.3 48 59-144 56-104 (283)
32 3qax_A Probable ABC transporte 92.9 0.2 6.7E-06 37.6 5.8 24 120-143 54-77 (268)
33 4i62_A Amino acid ABC transpor 91.4 0.25 8.6E-06 37.0 4.8 24 120-143 65-88 (269)
34 2v25_A Major cell-binding fact 91.2 0.37 1.3E-05 35.7 5.5 25 120-144 62-89 (259)
35 2vha_A Periplasmic binding tra 90.7 0.49 1.7E-05 36.2 6.0 49 58-144 15-71 (287)
36 1xt8_A Putative amino-acid tra 90.4 0.43 1.5E-05 36.8 5.4 25 120-144 67-94 (292)
37 2yjp_A Putative ABC transporte 88.2 0.63 2.2E-05 36.1 4.9 25 120-144 78-105 (291)
38 4f11_A Gamma-aminobutyric acid 75.6 3 0.0001 34.0 4.5 38 9-50 383-422 (433)
39 1dp4_A Atrial natriuretic pept 57.5 14 0.00049 29.8 5.0 36 9-48 374-414 (435)
40 1f3k_A Omega-conotoxin txvii; 46.9 3.5 0.00012 21.9 -0.3 9 116-124 13-21 (26)
41 1dkc_A PAFP-S, antifungal pept 40.1 12 0.0004 21.8 1.3 12 113-124 14-25 (38)
42 1q3j_A ALO3; peptide, knottin, 37.4 13 0.00043 21.4 1.1 11 114-124 13-23 (36)
43 3ks9_A Mglur1, metabotropic gl 36.4 23 0.0008 29.9 3.1 42 9-53 450-494 (496)
44 3vp7_A Vacuolar protein sortin 26.5 27 0.00092 27.6 1.7 29 120-148 41-70 (220)
45 3ady_A DOTD; 3-layer(BAB) sand 22.9 62 0.0021 24.0 3.0 27 115-141 68-94 (148)
46 1jdp_A NPR-C, atrial natriuret 22.5 88 0.003 25.2 4.2 40 9-49 371-413 (441)
No 1
>2rc8_A Glutamate [NMDA] receptor subunit 3A; membrane protein, cell junction, glycoprotein, ION transport channel, magnesium; 1.45A {Rattus norvegicus} PDB: 2rc7_A 2rc9_A 2rca_A 2rcb_A
Probab=99.45 E-value=1.9e-13 Score=110.06 Aligned_cols=92 Identities=35% Similarity=0.733 Sum_probs=68.8
Q ss_pred CCceEEEEeeccCCeEEEcCCCCCCCcccCcCceeeeecCCCCcchhhhhh---ccCCCc----cccccccchHHHHHHH
Q psy13438 58 EKFHLKITFLEEAPYIQMSPPDPVTGKCNMNRGVICRVAGDADMDKIDVAM---AHHNES----FYQCCSGFCIDLLGKF 130 (154)
Q Consensus 58 ~~~~LrVvTi~e~PfV~~~~~~~~~g~C~~~~~v~c~~~~~~~~~~~~~~~---~~gn~~----~~~Cc~G~cIDLL~~L 130 (154)
.++||||+|++++||||+++.++ +|.|. .+..|..+..+.-+.++..+ ...++. +..++.||++||+++|
T Consensus 3 ~~~~l~v~t~~~~P~v~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~G~~vdll~~i 79 (294)
T 2rc8_A 3 NKLHLRVVTLIEHPFVFTREVDD-EGLCP--AGQLCLDPMTNDSSMLDRLFSSLHSSNDTVPIKFKKCCYGYCIDLLEQL 79 (294)
T ss_dssp -CEEEEEEECCBTTTBEEECCCT-TSCCT--TSEEEECCCCCCHHHHHHHHHHHHSSSCCCCGGGEEEEESHHHHHHHHH
T ss_pred CCCEEEEEEEeeCCcEEEecCCC-CCcCc--cCcccccccccccccchhhhhhcccCCCCCCccccCCceEEhHHHHHHH
Confidence 56899999999999999998775 79998 47889886654422111100 011222 1236799999999999
Q ss_pred HHHhCCeEEEEEecCCCCCCcC
Q psy13438 131 AEELGFTYELVRVEDGKWGTQE 152 (154)
Q Consensus 131 a~~l~F~Yel~lv~DGkyGs~~ 152 (154)
++.+||+|+++.++||+||...
T Consensus 80 a~~lg~~~~~~~~~~~~~g~~~ 101 (294)
T 2rc8_A 80 AEDMNFDFDLYIVGDGKYGAWK 101 (294)
T ss_dssp HHHHTEEEEEEECTTCCCCCEE
T ss_pred HHHcCCcEEEEECCCCcccccC
Confidence 9999999999999999999753
No 2
>1pb7_A N-methyl-D-aspartate receptor subunit 1; ligand binding receptor, NR1, ligand binding protein; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1pbq_A* 1y1m_A 1y1z_A 1y20_A 2a5t_A* 1pb8_A 1pb9_A
Probab=99.42 E-value=2.1e-13 Score=110.02 Aligned_cols=86 Identities=41% Similarity=0.744 Sum_probs=60.7
Q ss_pred CceEEEEeeccCCeEEEcCCCCCCCcccCc---C-----ceeeeecCCCCcchhhhhhccCCCccccccccchHHHHHHH
Q psy13438 59 KFHLKITFLEEAPYIQMSPPDPVTGKCNMN---R-----GVICRVAGDADMDKIDVAMAHHNESFYQCCSGFCIDLLGKF 130 (154)
Q Consensus 59 ~~~LrVvTi~e~PfV~~~~~~~~~g~C~~~---~-----~v~c~~~~~~~~~~~~~~~~~gn~~~~~Cc~G~cIDLL~~L 130 (154)
++||||+|++++||||.++.. .+|.|... + +++|....+. . .+. + .-....|++|||+||+++|
T Consensus 3 ~~~l~v~t~~~~P~v~~~~~~-~~~~c~~~~~~~~~~~~~~l~vg~~~~-~----~P~-~-~~~~~g~~~G~~vDll~~i 74 (292)
T 1pb7_A 3 STRLKIVTIHQEPFVYVKPTM-SDGTCKEEFTVNGDPVKKVICTGPNDT-S----PGS-P-RHTVPQCCYGFCIDLLIKL 74 (292)
T ss_dssp -CCEEEEECCBTTTBEEEECC-TTSSCCCCBCTTSCBCCCEEEEEEC---------------CEEEEEEESHHHHHHHHH
T ss_pred CcEEEEEEEeeCCeEEEecCC-CCCccccccccccccccceeecccCCC-C----CCc-c-ccccccCcceeHHHHHHHH
Confidence 579999999999999998764 47888754 1 2333221100 0 000 0 0012457899999999999
Q ss_pred HHHhCCeEEEEEecCCCCCCcC
Q psy13438 131 AEELGFTYELVRVEDGKWGTQE 152 (154)
Q Consensus 131 a~~l~F~Yel~lv~DGkyGs~~ 152 (154)
|+.+||+|+++.++||+||+.+
T Consensus 75 a~~lg~~~~~~~~~d~~~g~~~ 96 (292)
T 1pb7_A 75 ARTMNFTYEVHLVADGKFGTQE 96 (292)
T ss_dssp HHHHTCCEEEEECTTCCCCCEE
T ss_pred HHHcCceEEEEEecCCcccccc
Confidence 9999999999999999999864
No 3
>2a5s_A N-methyl-D-aspartate receptor nmdar2A subunit, NMDA receptor nmdar2A; protein-ligand complex, metal transport,membrane protein; HET: GLU; 1.70A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 2a5t_B* 3oen_A* 3oel_A* 3oem_A* 3oek_A*
Probab=99.32 E-value=2.4e-12 Score=103.10 Aligned_cols=86 Identities=38% Similarity=0.723 Sum_probs=65.8
Q ss_pred CCceEEEEeeccCCeEEEcCCCCCCCcccCcCceeeeecCCCCcchhhhhhccCCCc-cccccccchHHHHHHHHHHhCC
Q psy13438 58 EKFHLKITFLEEAPYIQMSPPDPVTGKCNMNRGVICRVAGDADMDKIDVAMAHHNES-FYQCCSGFCIDLLGKFAEELGF 136 (154)
Q Consensus 58 ~~~~LrVvTi~e~PfV~~~~~~~~~g~C~~~~~v~c~~~~~~~~~~~~~~~~~gn~~-~~~Cc~G~cIDLL~~La~~l~F 136 (154)
.++||||+|++++||||..+.++..|.|++- +|+|......... .++.. ...++.|||+||+++|++.+||
T Consensus 3 ~~~~l~v~t~~~~P~v~~~~~~~~~~~~lrv-gv~~~~~~~~~~~-------~~~~~~~~~~~~G~~~dl~~~i~~~lg~ 74 (284)
T 2a5s_A 3 DDNHLSIVTLEEAPFVIVEDIDPLTETCVRN-TVPCRKFVKINNS-------TNEGMNVKKCCKGFCIDILKKLSRTVKF 74 (284)
T ss_dssp --CCEEEEECCBTTTBEEEECCCC-CCCCTT-CEEEEEEEESSSS-------SSCEEEEEEEEESHHHHHHHHHHHHHTC
T ss_pred CCCEEEEEEEccCCeEEeeccCCCCCccccc-ccccccccccccc-------ccCCCCCcceeeEEhHHHHHHHHHHCCC
Confidence 4689999999999999999887778999864 8888764322110 11111 1246699999999999999999
Q ss_pred eEEEEEecCCCCCCc
Q psy13438 137 TYELVRVEDGKWGTQ 151 (154)
Q Consensus 137 ~Yel~lv~DGkyGs~ 151 (154)
+|+++.++||+||+.
T Consensus 75 ~~~~~~~~~~~~g~~ 89 (284)
T 2a5s_A 75 TYDLYLVTNGKHGKK 89 (284)
T ss_dssp CEEEEECCSSSSCCE
T ss_pred CEEEEEccCCccCcc
Confidence 999999999999974
No 4
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=99.21 E-value=4.3e-11 Score=107.87 Aligned_cols=100 Identities=27% Similarity=0.542 Sum_probs=76.4
Q ss_pred eeeeEEEEeeeCCccCCeEEEEEcCcCCCceeEeeecCCCCCCCCCCCCCCCceEEEEeeccCCeEEEcCCCCCCCcccC
Q psy13438 8 SMIIEIELFHPTIFTSGICIGVWKSWEKEGLDIKDIVWPGNSHTPPQGVPEKFHLKITFLEEAPYIQMSPPDPVTGKCNM 87 (154)
Q Consensus 8 ~~~~~i~~~~~~~~~~~~~vG~W~~~~~~~L~~~~~~wpg~~~~~p~~~~~~~~LrVvTi~e~PfV~~~~~~~~~g~C~~ 87 (154)
+..++|+++..+.+. +||.|++. .++.... +. .. ...+++|+|+|..++||++.++...
T Consensus 346 ~~~~~I~~~~~~g~~---~vg~w~~~--~g~~~~~-----~~---~~-~~~~~~l~v~~~~~~P~~~~~~~~~------- 404 (823)
T 3kg2_A 346 NYTINIMELKTNGPR---KIGYWSEV--DKMVLTE-----DD---TS-GLEQKTVVVTTILESPYVMMKANHA------- 404 (823)
T ss_dssp SCEEEEEEECSSCEE---EEEEEETT--TEEEECC-----CC---CS-SCCCCCEEEEECCCTTTSEECTTGG-------
T ss_pred ccEEEEEEEcCCCCe---eEEEEcCC--CCceecc-----Cc---cc-ccCCCEEEEEEecCCCcEEEecCcc-------
Confidence 356889999987776 99999873 5665542 11 11 2367899999999999999875321
Q ss_pred cCceeeeecCCCCcchhhhhhccCCCccccccccchHHHHHHHHHHhCCeEEEEEecCCCCCCcC
Q psy13438 88 NRGVICRVAGDADMDKIDVAMAHHNESFYQCCSGFCIDLLGKFAEELGFTYELVRVEDGKWGTQE 152 (154)
Q Consensus 88 ~~~v~c~~~~~~~~~~~~~~~~~gn~~~~~Cc~G~cIDLL~~La~~l~F~Yel~lv~DGkyGs~~ 152 (154)
.. .++.++ .|||+||+++||+.+||+|+++.++||+||..+
T Consensus 405 ------------~~--------~~~~~~----~G~~~dl~~~~a~~l~~~~~~~~~~~~~~g~~~ 445 (823)
T 3kg2_A 405 ------------AL--------AGNERY----EGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARD 445 (823)
T ss_dssp ------------GC--------CGGGGE----ESHHHHHHHHHHHHHTCCEEEEECSSCCCCCBC
T ss_pred ------------cc--------CCCCce----EEEHHHHHHHHHHHcCCcEEEEEccCCcccccC
Confidence 00 123445 899999999999999999999999999999854
No 5
>3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell junction, cell membrane, glycoprotein, ION transport, ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A* 3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2xxr_A* 2xxt_A* 2xxx_A* 2xxw_A* 2xxy_A* 2xxu_A* 2xxv_A* 3qxm_A* 2i0c_A* ...
Probab=98.41 E-value=5e-07 Score=69.71 Aligned_cols=64 Identities=42% Similarity=0.796 Sum_probs=51.3
Q ss_pred CCceEEEEeeccCCeEEEcCCCCCCCcccCcCceeeeecCCCCcchhhhhhccCCCccccccccchHHHHHHHHHHhCCe
Q psy13438 58 EKFHLKITFLEEAPYIQMSPPDPVTGKCNMNRGVICRVAGDADMDKIDVAMAHHNESFYQCCSGFCIDLLGKFAEELGFT 137 (154)
Q Consensus 58 ~~~~LrVvTi~e~PfV~~~~~~~~~g~C~~~~~v~c~~~~~~~~~~~~~~~~~gn~~~~~Cc~G~cIDLL~~La~~l~F~ 137 (154)
.+++|||++...+||.+..+... .. .++... .||.+||+++|++.+|++
T Consensus 2 ~~~~l~v~~~~~~P~~~~~~~~~-------------------~~--------~~~g~~----~G~~vdl~~~ia~~lg~~ 50 (259)
T 3g3k_A 2 SNRSLIVTTILEEPYVLFKKSDK-------------------PL--------YGNDRF----EGYCIDLLRELSTHLGFT 50 (259)
T ss_dssp -CCCEEEEECCBTTTBEECCCSS-------------------CC--------CGGGGE----ESHHHHHHHHHHHHHTCC
T ss_pred CCcEEEEEEecCCCeEEEeeccc-------------------cc--------CCCcee----eeEHHHHHHHHHHHcCCe
Confidence 35789999999999999764321 00 123445 899999999999999999
Q ss_pred EEEEEecCCCCCCcC
Q psy13438 138 YELVRVEDGKWGTQE 152 (154)
Q Consensus 138 Yel~lv~DGkyGs~~ 152 (154)
+++..+++++||+.+
T Consensus 51 ~~~~~~p~~~~g~~~ 65 (259)
T 3g3k_A 51 YEIRLVEDGKYGAQD 65 (259)
T ss_dssp EEEEECTTCCCCCBC
T ss_pred EEEEECCCCCcCccc
Confidence 999999999999864
No 6
>1yae_A Glutamate receptor, ionotropic kainate 2; kainate receptor, membrane protein; HET: NAG FUC DOQ; 3.11A {Rattus norvegicus} SCOP: c.94.1.1
Probab=98.35 E-value=1e-06 Score=70.79 Aligned_cols=66 Identities=41% Similarity=0.735 Sum_probs=51.9
Q ss_pred CCCCceEEEEeeccCCeEEEcCCCCCCCcccCcCceeeeecCCCCcchhhhhhccCCCccccccccchHHHHHHHHHHhC
Q psy13438 56 VPEKFHLKITFLEEAPYIQMSPPDPVTGKCNMNRGVICRVAGDADMDKIDVAMAHHNESFYQCCSGFCIDLLGKFAEELG 135 (154)
Q Consensus 56 ~~~~~~LrVvTi~e~PfV~~~~~~~~~g~C~~~~~v~c~~~~~~~~~~~~~~~~~gn~~~~~Cc~G~cIDLL~~La~~l~ 135 (154)
.....+|+|++...+||++..+.+. . . ..+..+ .||++||+++|++.+|
T Consensus 9 i~~~~~l~V~~~~~~P~~~~~~~~~--~-----------------~--------~~~g~~----~G~~vdl~~~ia~~lg 57 (312)
T 1yae_A 9 SLSNRSLIVTTILEEPYVLFKKSDK--P-----------------L--------YGNDRF----EGYCIDLLRELSTILG 57 (312)
T ss_dssp TTCSCEEEEEECCBTTTBEECCCSS--C-----------------C--------CGGGGE----ESHHHHHHHHHHHHHC
T ss_pred hhcCceEEEEEeccCCeeEEecccc--c-----------------c--------CCCceE----EEEEHHHHHHHHHHcC
Confidence 4567899999999999998753210 0 0 012234 8999999999999999
Q ss_pred CeEEEEEecCCCCCCcC
Q psy13438 136 FTYELVRVEDGKWGTQE 152 (154)
Q Consensus 136 F~Yel~lv~DGkyGs~~ 152 (154)
++|++..++|++||+.+
T Consensus 58 ~~~~~~~~~~~~~g~~~ 74 (312)
T 1yae_A 58 FTYEIRLVEDGKYGAQD 74 (312)
T ss_dssp CEEEEEECSSCCCCCBC
T ss_pred CeEEEEecCCCccceec
Confidence 99999999999999765
No 7
>2v3u_A Glutamate receptor delta-2 subunit; postsynaptic membrane, ionotropic glutamate receptors, transmembrane, membrane protein; 1.74A {Rattus norvegicus} PDB: 2v3t_A
Probab=98.19 E-value=3.3e-06 Score=64.78 Aligned_cols=60 Identities=30% Similarity=0.609 Sum_probs=48.7
Q ss_pred CceEEEEeeccCCeEEEcCCCCCCCcccCcCceeeeecCCCCcchhhhhhccCCCccccccccchHHHHHHHHHHhCCeE
Q psy13438 59 KFHLKITFLEEAPYIQMSPPDPVTGKCNMNRGVICRVAGDADMDKIDVAMAHHNESFYQCCSGFCIDLLGKFAEELGFTY 138 (154)
Q Consensus 59 ~~~LrVvTi~e~PfV~~~~~~~~~g~C~~~~~v~c~~~~~~~~~~~~~~~~~gn~~~~~Cc~G~cIDLL~~La~~l~F~Y 138 (154)
+++|+|++...+||.+..+.. +| .+... .||++||+++|++.+|+++
T Consensus 2 ~~~l~v~~~~~pP~~~~~~~~--~g---------------------------~~g~~----~G~~~dl~~~i~~~lg~~~ 48 (265)
T 2v3u_A 2 GVVLRVVTVLEEPFVMVSENV--LG---------------------------KPKKY----QGFSIDVLDALSNYLGFNY 48 (265)
T ss_dssp CCEEEEEECCBTTTBEEECCS--TT---------------------------CCCEE----ESHHHHHHHHHHHHHTCEE
T ss_pred CeEEEEEEeccCCeEEEecCC--CC---------------------------CcceE----eEEEHHHHHHHHHHcCCcE
Confidence 468999999999999876431 01 01234 7999999999999999999
Q ss_pred EEEEecCCCCCCc
Q psy13438 139 ELVRVEDGKWGTQ 151 (154)
Q Consensus 139 el~lv~DGkyGs~ 151 (154)
++..+++++||..
T Consensus 49 ~~~~~~~~~~g~~ 61 (265)
T 2v3u_A 49 EIYVAPDHKYGSP 61 (265)
T ss_dssp EEEECTTCCCCCB
T ss_pred EEEEccCCccccc
Confidence 9999999999964
No 8
>1mqi_A Glutamate receptor 2; GLUR2, ligand binding core, S1S2, partial agonist, WILLARDIINES, fluoro-WILLARDIINE, membrane protein; HET: FWD; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1ftj_A* 1ftl_A* 1fto_A 1fw0_A* 1m5b_A* 1ftm_A* 1m5c_A* 1mm6_A* 1mm7_A* 1mqg_A* 1m5e_A* 1mqj_A* 1ms7_A* 1mxu_A* 1mxv_A 1mxw_A 1mxx_A 1mxy_A 1mxz_A 1my0_A ...
Probab=98.04 E-value=7.9e-06 Score=63.02 Aligned_cols=63 Identities=33% Similarity=0.693 Sum_probs=49.7
Q ss_pred CceEEEEeeccCCeEEEcCCCCCCCcccCcCceeeeecCCCCcchhhhhhccCCCccccccccchHHHHHHHHHHhCCeE
Q psy13438 59 KFHLKITFLEEAPYIQMSPPDPVTGKCNMNRGVICRVAGDADMDKIDVAMAHHNESFYQCCSGFCIDLLGKFAEELGFTY 138 (154)
Q Consensus 59 ~~~LrVvTi~e~PfV~~~~~~~~~g~C~~~~~v~c~~~~~~~~~~~~~~~~~gn~~~~~Cc~G~cIDLL~~La~~l~F~Y 138 (154)
+++|+|++...+||.+..+.. .|. .++... .||.+||+++|++.+|+++
T Consensus 3 ~~~l~v~~~~~pP~~~~~~~~----~~~-----------------------~~~g~~----~G~~~dl~~~ia~~lg~~~ 51 (263)
T 1mqi_A 3 NKTVVVTTILESPYVMMKKNH----EML-----------------------EGNERY----EGYCVDLAAEIAKHCGFKY 51 (263)
T ss_dssp CCCEEEEECCBTTTBEECTTG----GGC-----------------------CGGGGE----ESHHHHHHHHHHHHHTCCE
T ss_pred CeEEEEEEecCCCcEEEecCc----ccc-----------------------cCCCce----eeeHHHHHHHHHHHcCceE
Confidence 468999999999999875321 111 012344 7999999999999999999
Q ss_pred EEEEecCCCCCCcC
Q psy13438 139 ELVRVEDGKWGTQE 152 (154)
Q Consensus 139 el~lv~DGkyGs~~ 152 (154)
++..+++|+||..+
T Consensus 52 ~~~~~~~~~~g~~~ 65 (263)
T 1mqi_A 52 KLTIVGDGKYGARD 65 (263)
T ss_dssp EEEECTTCCCCCBC
T ss_pred EEEEccccccCccC
Confidence 99999999999764
No 9
>4gvo_A LMO2349 protein; structural genomics, IDP05245, L-cystine, ABC transporter, periplasmic binding protein, niaid; HET: HIS; 1.45A {Listeria monocytogenes} PDB: 2o1m_A
Probab=96.65 E-value=0.0023 Score=48.90 Aligned_cols=50 Identities=8% Similarity=0.262 Sum_probs=38.3
Q ss_pred CCCceEEEEeec-cCCeEEEcCCCCCCCcccCcCceeeeecCCCCcchhhhhhccCCCccccccccchHHHHHHHHHHh-
Q psy13438 57 PEKFHLKITFLE-EAPYIQMSPPDPVTGKCNMNRGVICRVAGDADMDKIDVAMAHHNESFYQCCSGFCIDLLGKFAEEL- 134 (154)
Q Consensus 57 ~~~~~LrVvTi~-e~PfV~~~~~~~~~g~C~~~~~v~c~~~~~~~~~~~~~~~~~gn~~~~~Cc~G~cIDLL~~La~~l- 134 (154)
.+.++|+|.|-. -+||.+..+. ... .||.+||+++|+++|
T Consensus 6 ~~~~tl~vg~~~~~pP~~~~d~~----------------------------------G~~----~G~~vdl~~~ia~~l~ 47 (243)
T 4gvo_A 6 QKVQTITVGTGTQFPNVCFLDEN----------------------------------GKL----TGYDVELVKEIDKRLP 47 (243)
T ss_dssp --CEEEEEEECSEETTTEEECTT----------------------------------SCE----ESHHHHHHHHHHHTCT
T ss_pred ccCCeEEEEECCCCCCeEEECCC----------------------------------CcE----EEhHHHHHHHHHHhcc
Confidence 356799999864 4999986531 223 799999999999998
Q ss_pred CCeEEEEEec
Q psy13438 135 GFTYELVRVE 144 (154)
Q Consensus 135 ~F~Yel~lv~ 144 (154)
|+++++..++
T Consensus 48 g~~~~~~~~~ 57 (243)
T 4gvo_A 48 GYKFKFKTMD 57 (243)
T ss_dssp TEEEEEEECC
T ss_pred CCeEEEEECC
Confidence 8999988764
No 10
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0
Probab=96.53 E-value=0.0041 Score=46.89 Aligned_cols=49 Identities=20% Similarity=0.325 Sum_probs=40.1
Q ss_pred CCceEEEEee-ccCCeEEEcCCCCCCCcccCcCceeeeecCCCCcchhhhhhccCCCccccccccchHHHHHHHHHHhCC
Q psy13438 58 EKFHLKITFL-EEAPYIQMSPPDPVTGKCNMNRGVICRVAGDADMDKIDVAMAHHNESFYQCCSGFCIDLLGKFAEELGF 136 (154)
Q Consensus 58 ~~~~LrVvTi-~e~PfV~~~~~~~~~g~C~~~~~v~c~~~~~~~~~~~~~~~~~gn~~~~~Cc~G~cIDLL~~La~~l~F 136 (154)
...+|+|++. ..+||.+..+. ... .||.+||+++|++.+|+
T Consensus 3 ~~~~l~v~~~~~~~P~~~~~~~----------------------------------g~~----~G~~~dl~~~i~~~~g~ 44 (245)
T 3k4u_A 3 LRGELRVGLEPGYLPFEMKDKK----------------------------------GNV----IGFDVDLAREMAKAMGV 44 (245)
T ss_dssp CCSEEEEEECTTSTTTCEEETT----------------------------------TEE----ESHHHHHHHHHHHHHTC
T ss_pred cCCeEEEEECCCcCCeeEECCC----------------------------------CCC----ccchHHHHHHHHHHhCC
Confidence 4578999998 89999986421 123 79999999999999999
Q ss_pred eEEEEEec
Q psy13438 137 TYELVRVE 144 (154)
Q Consensus 137 ~Yel~lv~ 144 (154)
++++..++
T Consensus 45 ~~~~~~~~ 52 (245)
T 3k4u_A 45 KLKLVPTS 52 (245)
T ss_dssp EEEEEECC
T ss_pred eEEEEEcc
Confidence 99998763
No 11
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0
Probab=96.50 E-value=0.0038 Score=47.14 Aligned_cols=48 Identities=19% Similarity=0.287 Sum_probs=37.5
Q ss_pred CceEEEEee-ccCCeEEEcCCCCCCCcccCcCceeeeecCCCCcchhhhhhccCCCccccccccchHHHHHHHHHHhCCe
Q psy13438 59 KFHLKITFL-EEAPYIQMSPPDPVTGKCNMNRGVICRVAGDADMDKIDVAMAHHNESFYQCCSGFCIDLLGKFAEELGFT 137 (154)
Q Consensus 59 ~~~LrVvTi-~e~PfV~~~~~~~~~g~C~~~~~v~c~~~~~~~~~~~~~~~~~gn~~~~~Cc~G~cIDLL~~La~~l~F~ 137 (154)
..+|+|++. .-+||.+..+. ... .||.+||+++|++.+|++
T Consensus 4 a~~l~v~~~~~~~P~~~~~~~----------------------------------g~~----~G~~~dl~~~i~~~~g~~ 45 (232)
T 3i6v_A 4 ADTVRMGTEGAYPPYNFINDA----------------------------------GEV----DGFERELGDELCKRAGLT 45 (232)
T ss_dssp --CEEEEECSEETTTEEECTT----------------------------------SCE----ESHHHHHHHHHHHHHTCC
T ss_pred CCEEEEEECCCCCCeeEECCC----------------------------------CCE----eeehHHHHHHHHHHcCCc
Confidence 368999988 45999986421 123 799999999999999999
Q ss_pred EEEEEec
Q psy13438 138 YELVRVE 144 (154)
Q Consensus 138 Yel~lv~ 144 (154)
+++...+
T Consensus 46 ~~~~~~~ 52 (232)
T 3i6v_A 46 CEWVKND 52 (232)
T ss_dssp EEEEECC
T ss_pred eEEEECC
Confidence 9998753
No 12
>4h5g_A Amino acid ABC superfamily ATP binding cassette transporter, binding protein; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: ARG; 1.78A {Streptococcus pneumoniae} PDB: 4h5f_A*
Probab=96.47 E-value=0.0021 Score=49.13 Aligned_cols=52 Identities=27% Similarity=0.324 Sum_probs=39.2
Q ss_pred CCceEEEEeec-cCCeEEEcCCCCCCCcccCcCceeeeecCCCCcchhhhhhccCCCccccccccchHHHHHHHHHHhCC
Q psy13438 58 EKFHLKITFLE-EAPYIQMSPPDPVTGKCNMNRGVICRVAGDADMDKIDVAMAHHNESFYQCCSGFCIDLLGKFAEELGF 136 (154)
Q Consensus 58 ~~~~LrVvTi~-e~PfV~~~~~~~~~g~C~~~~~v~c~~~~~~~~~~~~~~~~~gn~~~~~Cc~G~cIDLL~~La~~l~F 136 (154)
.+.+|+|++-. -+||.+....+ ++... .||.+||+++|++.+|+
T Consensus 10 ~~g~L~Vg~~~~~pP~~~~~~~d-------------------------------~~g~~----~G~~vdl~~~ia~~lg~ 54 (243)
T 4h5g_A 10 QKGKLVVATSPDYAPFEFQSLVD-------------------------------GKNQV----VGADIDMAQAIADELGV 54 (243)
T ss_dssp HHTEEEEEECCCBTTTBEEEEET-------------------------------TEEEE----ESHHHHHHHHHHHHHTS
T ss_pred hCCEEEEEECCCCCCcEeeeccC-------------------------------CCCcE----EEeHHHHHHHHHHHhCC
Confidence 34689998864 58998764322 12334 79999999999999999
Q ss_pred eEEEEEec
Q psy13438 137 TYELVRVE 144 (154)
Q Consensus 137 ~Yel~lv~ 144 (154)
++++..++
T Consensus 55 ~~~~~~~~ 62 (243)
T 4h5g_A 55 KLEILSMS 62 (243)
T ss_dssp EEEEEECC
T ss_pred ceEEeccc
Confidence 99998764
No 13
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa}
Probab=96.25 E-value=0.0088 Score=44.62 Aligned_cols=49 Identities=22% Similarity=0.369 Sum_probs=39.2
Q ss_pred CCceEEEEeec-cCCeEEEcCCCCCCCcccCcCceeeeecCCCCcchhhhhhccCCCccccccccchHHHHHHHHHHhCC
Q psy13438 58 EKFHLKITFLE-EAPYIQMSPPDPVTGKCNMNRGVICRVAGDADMDKIDVAMAHHNESFYQCCSGFCIDLLGKFAEELGF 136 (154)
Q Consensus 58 ~~~~LrVvTi~-e~PfV~~~~~~~~~g~C~~~~~v~c~~~~~~~~~~~~~~~~~gn~~~~~Cc~G~cIDLL~~La~~l~F 136 (154)
...+|+|++.. -+||.+..+. ... .||.+||+++|++.+|+
T Consensus 13 ~~~~l~v~~~~~~~P~~~~~~~----------------------------------g~~----~G~~~dl~~~i~~~~g~ 54 (239)
T 3kbr_A 13 ESGVLRVATTGDYKPFSYRTEE----------------------------------GGY----AGFDVDMAQRLAESLGA 54 (239)
T ss_dssp HHTEEEEEECSEETTTEEECTT----------------------------------SCE----ESHHHHHHHHHHHHTTC
T ss_pred hCCeEEEEECCCCCCeeEECCC----------------------------------CCE----EeehHHHHHHHHHHHCC
Confidence 45789999965 5999986531 123 79999999999999999
Q ss_pred eEEEEEec
Q psy13438 137 TYELVRVE 144 (154)
Q Consensus 137 ~Yel~lv~ 144 (154)
++++...+
T Consensus 55 ~~~~~~~~ 62 (239)
T 3kbr_A 55 KLVVVPTS 62 (239)
T ss_dssp EEEEEECC
T ss_pred ceEEEEeC
Confidence 99998763
No 14
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A
Probab=96.22 E-value=0.01 Score=45.74 Aligned_cols=49 Identities=22% Similarity=0.463 Sum_probs=39.5
Q ss_pred CCceEEEEeec-cCCeEEEcCCCCCCCcccCcCceeeeecCCCCcchhhhhhccCCCccccccccchHHHHHHHHHHhCC
Q psy13438 58 EKFHLKITFLE-EAPYIQMSPPDPVTGKCNMNRGVICRVAGDADMDKIDVAMAHHNESFYQCCSGFCIDLLGKFAEELGF 136 (154)
Q Consensus 58 ~~~~LrVvTi~-e~PfV~~~~~~~~~g~C~~~~~v~c~~~~~~~~~~~~~~~~~gn~~~~~Cc~G~cIDLL~~La~~l~F 136 (154)
....|+|++.. -+||.+..+. ... .||.+||+++|++.+|+
T Consensus 30 ~~~~l~v~~~~~~~P~~~~~~~----------------------------------g~~----~G~~~dl~~~i~~~lg~ 71 (267)
T 3mpk_A 30 DHPVVKVAVLNLFAPFTLFRTD----------------------------------EQF----GGISAAVLQLLQLRTGL 71 (267)
T ss_dssp HCSEEEEEEETEETTTEECCTT----------------------------------CCC----BSHHHHHHHHHHHHHCC
T ss_pred hCCcEEEEeCCCCCCeEEECCC----------------------------------CcE----eeeHHHHHHHHHHHHCC
Confidence 45799999987 4999986421 123 79999999999999999
Q ss_pred eEEEEEec
Q psy13438 137 TYELVRVE 144 (154)
Q Consensus 137 ~Yel~lv~ 144 (154)
++++..++
T Consensus 72 ~~~~~~~~ 79 (267)
T 3mpk_A 72 DFEIIGVD 79 (267)
T ss_dssp EEEEEEES
T ss_pred eEEEEecC
Confidence 99998654
No 15
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0
Probab=96.19 E-value=0.011 Score=44.24 Aligned_cols=48 Identities=25% Similarity=0.335 Sum_probs=38.5
Q ss_pred CceEEEEeec-cCCeEEE-cCCCCCCCcccCcCceeeeecCCCCcchhhhhhccCCCccccccccchHHHHHHHHHHhCC
Q psy13438 59 KFHLKITFLE-EAPYIQM-SPPDPVTGKCNMNRGVICRVAGDADMDKIDVAMAHHNESFYQCCSGFCIDLLGKFAEELGF 136 (154)
Q Consensus 59 ~~~LrVvTi~-e~PfV~~-~~~~~~~g~C~~~~~v~c~~~~~~~~~~~~~~~~~gn~~~~~Cc~G~cIDLL~~La~~l~F 136 (154)
..+|+|++.. .+||.+. .+ +... .||.+||+++|++.+|+
T Consensus 2 ~~~l~v~~~~~~~P~~~~~~~----------------------------------~g~~----~G~~~dl~~~i~~~~g~ 43 (237)
T 3kzg_A 2 SLNLTIGTSKFNPPFEVWSGN----------------------------------NSSL----YGFDIDLMQEICRRLHA 43 (237)
T ss_dssp CCEEEEEEESEETTTEECCCT----------------------------------TSCC----BSHHHHHHHHHHHHTTC
T ss_pred CceEEEEECCCCCCeEEEeCC----------------------------------CCCE----eeehHHHHHHHHHHhCC
Confidence 3589999986 7999986 31 1123 79999999999999999
Q ss_pred eEEEEEec
Q psy13438 137 TYELVRVE 144 (154)
Q Consensus 137 ~Yel~lv~ 144 (154)
++++...+
T Consensus 44 ~~~~~~~~ 51 (237)
T 3kzg_A 44 TCTFEAYI 51 (237)
T ss_dssp EEEEEEEC
T ss_pred ceEEEEcC
Confidence 99998764
No 16
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0
Probab=96.17 E-value=0.0084 Score=43.91 Aligned_cols=46 Identities=17% Similarity=0.336 Sum_probs=36.9
Q ss_pred ceEEEEeec-cCCeEEEcCCCCCCCcccCcCceeeeecCCCCcchhhhhhccCCCccccccccchHHHHHHHHHHhCCeE
Q psy13438 60 FHLKITFLE-EAPYIQMSPPDPVTGKCNMNRGVICRVAGDADMDKIDVAMAHHNESFYQCCSGFCIDLLGKFAEELGFTY 138 (154)
Q Consensus 60 ~~LrVvTi~-e~PfV~~~~~~~~~g~C~~~~~v~c~~~~~~~~~~~~~~~~~gn~~~~~Cc~G~cIDLL~~La~~l~F~Y 138 (154)
.+|+|++.. -+||.+..+. ... .||.+||++++++.+|+++
T Consensus 2 ~~l~v~~~~~~~P~~~~~~~----------------------------------g~~----~G~~~dl~~~i~~~~g~~~ 43 (227)
T 3tql_A 2 DTIKFATEATYPPYVYMGPS----------------------------------GQV----EGFGADIVKAVCKQMQAVC 43 (227)
T ss_dssp CEEEEEECSCBTTTBEEC------------------------------------CCE----ESHHHHHHHHHHHHTTCEE
T ss_pred ceEEEEEcCCCCCeeEECCC----------------------------------CCc----ccchHHHHHHHHHHhCCeE
Confidence 478999975 8999986421 123 7999999999999999999
Q ss_pred EEEEe
Q psy13438 139 ELVRV 143 (154)
Q Consensus 139 el~lv 143 (154)
++...
T Consensus 44 ~~~~~ 48 (227)
T 3tql_A 44 TISNQ 48 (227)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99875
No 17
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0
Probab=96.07 E-value=0.011 Score=44.22 Aligned_cols=48 Identities=19% Similarity=0.262 Sum_probs=37.8
Q ss_pred CCceEEEEee-ccCCeEEEcCCCCCCCcccCcCceeeeecCCCCcchhhhhhccCCCccccccccchHHHHHHHHHHhCC
Q psy13438 58 EKFHLKITFL-EEAPYIQMSPPDPVTGKCNMNRGVICRVAGDADMDKIDVAMAHHNESFYQCCSGFCIDLLGKFAEELGF 136 (154)
Q Consensus 58 ~~~~LrVvTi-~e~PfV~~~~~~~~~g~C~~~~~v~c~~~~~~~~~~~~~~~~~gn~~~~~Cc~G~cIDLL~~La~~l~F 136 (154)
...+|+|++. ..+||.+..+. ... .||.+||+++|++.+|+
T Consensus 9 ~~~~l~v~~~~~~~P~~~~~~~----------------------------------g~~----~G~~~dl~~~i~~~~g~ 50 (242)
T 3del_B 9 NSEKFIVGTNATYPPFEFVDKR----------------------------------GEV----VGFDIDLAREISNKLGK 50 (242)
T ss_dssp --CEEEEEECSCBTTTBEECTT----------------------------------SCE----ESHHHHHHHHHHHHHTC
T ss_pred cCCcEEEEeCCCCCCeeEECCC----------------------------------CCE----EEeeHHHHHHHHHHcCC
Confidence 5578999996 57999986421 123 79999999999999999
Q ss_pred eEEEEEe
Q psy13438 137 TYELVRV 143 (154)
Q Consensus 137 ~Yel~lv 143 (154)
++++...
T Consensus 51 ~~~~~~~ 57 (242)
T 3del_B 51 TLDVREF 57 (242)
T ss_dssp EEEEEEC
T ss_pred ceEEEEc
Confidence 9999876
No 18
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=95.99 E-value=0.0095 Score=43.91 Aligned_cols=49 Identities=24% Similarity=0.464 Sum_probs=38.1
Q ss_pred CceEEEEeeccCCeEEEcCCCCCCCcccCcCceeeeecCCCCcchhhhhhccCCCccccccccchHHHHHHHHHHhCCeE
Q psy13438 59 KFHLKITFLEEAPYIQMSPPDPVTGKCNMNRGVICRVAGDADMDKIDVAMAHHNESFYQCCSGFCIDLLGKFAEELGFTY 138 (154)
Q Consensus 59 ~~~LrVvTi~e~PfV~~~~~~~~~g~C~~~~~v~c~~~~~~~~~~~~~~~~~gn~~~~~Cc~G~cIDLL~~La~~l~F~Y 138 (154)
..+|+|.+...+||.+..+.. +... .||.+||+++|++.+|+++
T Consensus 3 ~~~l~v~~~~~~P~~~~~~~~--------------------------------~g~~----~G~~~dl~~~i~~~~g~~~ 46 (233)
T 1ii5_A 3 AMALKVGVVGNPPFVFYGEGK--------------------------------NAAF----TGISLDVWRAVAESQKWNS 46 (233)
T ss_dssp SCCEEEEECCCTTTCEEC-------------------------------------CE----ESHHHHHHHHHHHHHTCCE
T ss_pred CceEEEEecCCCCeEEEecCC--------------------------------CCCE----EEEeHHHHHHHHHHcCCcE
Confidence 468999998899999862101 1223 7999999999999999999
Q ss_pred EEEEe
Q psy13438 139 ELVRV 143 (154)
Q Consensus 139 el~lv 143 (154)
++...
T Consensus 47 ~~~~~ 51 (233)
T 1ii5_A 47 EYVRQ 51 (233)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 99876
No 19
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311}
Probab=95.97 E-value=0.011 Score=45.13 Aligned_cols=49 Identities=24% Similarity=0.312 Sum_probs=39.6
Q ss_pred CCceEEEEeecc-CCeEEEcCCCCCCCcccCcCceeeeecCCCCcchhhhhhccCCCccccccccchHHHHHHHHHHhCC
Q psy13438 58 EKFHLKITFLEE-APYIQMSPPDPVTGKCNMNRGVICRVAGDADMDKIDVAMAHHNESFYQCCSGFCIDLLGKFAEELGF 136 (154)
Q Consensus 58 ~~~~LrVvTi~e-~PfV~~~~~~~~~g~C~~~~~v~c~~~~~~~~~~~~~~~~~gn~~~~~Cc~G~cIDLL~~La~~l~F 136 (154)
...+|||++... +||.+..+. ... .||.+||+++|++.+|+
T Consensus 19 ~~~~l~v~~~~~~~P~~~~~~~----------------------------------g~~----~G~~~dl~~~i~~~~g~ 60 (268)
T 3hv1_A 19 KEKKIKIGFDATFVPMGYEEKD----------------------------------GSY----IGFDIDLANAVFKLYGI 60 (268)
T ss_dssp HHTEEEEEECTEETTTEEECTT----------------------------------SCE----ECHHHHHHHHHHHTTTC
T ss_pred cCCcEEEEECCCCCCceEECCC----------------------------------CCE----EEehHHHHHHHHHHhCC
Confidence 457999999855 999987521 123 79999999999999999
Q ss_pred eEEEEEec
Q psy13438 137 TYELVRVE 144 (154)
Q Consensus 137 ~Yel~lv~ 144 (154)
++++...+
T Consensus 61 ~~~~~~~~ 68 (268)
T 3hv1_A 61 DVEWQAID 68 (268)
T ss_dssp EEEEEECC
T ss_pred cEEEEECC
Confidence 99998764
No 20
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei}
Probab=95.90 E-value=0.011 Score=44.67 Aligned_cols=48 Identities=21% Similarity=0.361 Sum_probs=38.2
Q ss_pred CCceEEEEee-ccCCeEEEcCCCCCCCcccCcCceeeeecCCCCcchhhhhhccCCCccccccccchHHHHHHHHHHhCC
Q psy13438 58 EKFHLKITFL-EEAPYIQMSPPDPVTGKCNMNRGVICRVAGDADMDKIDVAMAHHNESFYQCCSGFCIDLLGKFAEELGF 136 (154)
Q Consensus 58 ~~~~LrVvTi-~e~PfV~~~~~~~~~g~C~~~~~v~c~~~~~~~~~~~~~~~~~gn~~~~~Cc~G~cIDLL~~La~~l~F 136 (154)
...+|+|++. .-+||.+.. . ... .||.+||+++|++.+|+
T Consensus 22 ~~~~l~v~~~~~~~P~~~~~-~----------------------------------g~~----~G~~~dl~~~i~~~~g~ 62 (249)
T 4f3p_A 22 MAKELVVGTDTSFMPFEFKQ-G----------------------------------DKY----VGFDLDLWAEIAKGAGW 62 (249)
T ss_dssp --CCEEEEEESCBTTTBEEE-T----------------------------------TEE----ESHHHHHHHHHHHHHTC
T ss_pred cCceEEEEeCCCCCCeEEec-C----------------------------------CeE----EEEhHHHHHHHHHHcCC
Confidence 5678999998 579999862 1 123 79999999999999999
Q ss_pred eEEEEEec
Q psy13438 137 TYELVRVE 144 (154)
Q Consensus 137 ~Yel~lv~ 144 (154)
++++...+
T Consensus 63 ~~~~~~~~ 70 (249)
T 4f3p_A 63 TYKIQPMD 70 (249)
T ss_dssp CEEEEEEC
T ss_pred ceEEEecC
Confidence 99998764
No 21
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=95.78 E-value=0.019 Score=42.65 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=22.4
Q ss_pred ccchHHHHHHHHHHhCCeEEEEEe
Q psy13438 120 SGFCIDLLGKFAEELGFTYELVRV 143 (154)
Q Consensus 120 ~G~cIDLL~~La~~l~F~Yel~lv 143 (154)
.||.+||++++++.+|+++++...
T Consensus 27 ~G~~~dl~~~i~~~~g~~~~~~~~ 50 (239)
T 1lst_A 27 IGFDIDLGNEMCKRMQVKCTWVAS 50 (239)
T ss_dssp ESHHHHHHHHHHHHHTCEEEEEEC
T ss_pred eeEHHHHHHHHHHHHCCeEEEEeC
Confidence 799999999999999999999865
No 22
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=95.68 E-value=0.011 Score=43.22 Aligned_cols=47 Identities=23% Similarity=0.388 Sum_probs=37.1
Q ss_pred ceEEEEeeccCCeEEEcCCCCCCCcccCcCceeeeecCCCCcchhhhhhccCCCccccccccchHHHHHHHHHHhCCeEE
Q psy13438 60 FHLKITFLEEAPYIQMSPPDPVTGKCNMNRGVICRVAGDADMDKIDVAMAHHNESFYQCCSGFCIDLLGKFAEELGFTYE 139 (154)
Q Consensus 60 ~~LrVvTi~e~PfV~~~~~~~~~g~C~~~~~v~c~~~~~~~~~~~~~~~~~gn~~~~~Cc~G~cIDLL~~La~~l~F~Ye 139 (154)
.+|+|.+...+||.+. +. ... .||.+||++++++.+|++++
T Consensus 3 ~~l~v~~~~~~P~~~~-~~----------------------------------g~~----~G~~~dl~~~~~~~~g~~~~ 43 (228)
T 2pyy_A 3 QPLLVATRVIPPFVLS-NK----------------------------------GEL----SGFSIDLWRSIATQIGIESK 43 (228)
T ss_dssp -CEEEEECCBTTTBBC-C-------------------------------------C----BSHHHHHHHHHHHHHTCCEE
T ss_pred ceEEEEecCCCCeEEe-cC----------------------------------Cce----EEEeHHHHHHHHHHhCCcEE
Confidence 4789999888999875 21 123 79999999999999999999
Q ss_pred EEEecC
Q psy13438 140 LVRVED 145 (154)
Q Consensus 140 l~lv~D 145 (154)
+...++
T Consensus 44 ~~~~~~ 49 (228)
T 2pyy_A 44 LIEYSS 49 (228)
T ss_dssp EEECSS
T ss_pred EEEcCC
Confidence 988753
No 23
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A
Probab=95.60 E-value=0.024 Score=43.30 Aligned_cols=48 Identities=13% Similarity=0.263 Sum_probs=38.5
Q ss_pred CCceEEEEeec-cCCeEEEcCCCCCCCcccCcCceeeeecCCCCcchhhhhhccCCCccccccccchHHHHHHHHHHhCC
Q psy13438 58 EKFHLKITFLE-EAPYIQMSPPDPVTGKCNMNRGVICRVAGDADMDKIDVAMAHHNESFYQCCSGFCIDLLGKFAEELGF 136 (154)
Q Consensus 58 ~~~~LrVvTi~-e~PfV~~~~~~~~~g~C~~~~~v~c~~~~~~~~~~~~~~~~~gn~~~~~Cc~G~cIDLL~~La~~l~F 136 (154)
...+|+|++.. .+||.+..+. ... .||.+||++++++.+|+
T Consensus 27 ~~~~l~v~~~~~~~P~~~~~~~----------------------------------g~~----~G~~~dl~~~i~~~~g~ 68 (259)
T 4dz1_A 27 EGRTLNVAVSPASPPMLFKSAD----------------------------------GKL----QGIDLELFSSYCQSRHC 68 (259)
T ss_dssp TTCEEEEEECCCBTTTBEECTT----------------------------------CCE----ESHHHHHHHHHHHHHTC
T ss_pred cCCeEEEEECCCCCCeEEECCC----------------------------------CCE----EEeHHHHHHHHHHHhCC
Confidence 45789999975 4999886521 123 79999999999999999
Q ss_pred eEEEEEe
Q psy13438 137 TYELVRV 143 (154)
Q Consensus 137 ~Yel~lv 143 (154)
++++...
T Consensus 69 ~~~~~~~ 75 (259)
T 4dz1_A 69 KLNITEY 75 (259)
T ss_dssp EEEEEEC
T ss_pred eEEEEEc
Confidence 9998765
No 24
>2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A*
Probab=95.59 E-value=0.019 Score=43.34 Aligned_cols=49 Identities=20% Similarity=0.273 Sum_probs=39.1
Q ss_pred CCceEEEEeeccCCeEEEcCCCCCCCcccCcCceeeeecCCCCcchhhhhhccCCCccccccccchHHHHHHHHHHhCCe
Q psy13438 58 EKFHLKITFLEEAPYIQMSPPDPVTGKCNMNRGVICRVAGDADMDKIDVAMAHHNESFYQCCSGFCIDLLGKFAEELGFT 137 (154)
Q Consensus 58 ~~~~LrVvTi~e~PfV~~~~~~~~~g~C~~~~~v~c~~~~~~~~~~~~~~~~~gn~~~~~Cc~G~cIDLL~~La~~l~F~ 137 (154)
...+|+|++...+||.+..+. ... .||.+||++++++.+|++
T Consensus 11 ~~~~l~v~~~~~~P~~~~~~~----------------------------------g~~----~G~~~dl~~~i~~~~g~~ 52 (257)
T 2q88_A 11 EQGFARIAIANEPPFTAVGAD----------------------------------GKV----SGAAPDVAREIFKRLGVA 52 (257)
T ss_dssp HHTEEEEEECCCTTTCEECTT----------------------------------CCE----ESHHHHHHHHHHHHTTCC
T ss_pred cCCeEEEEcCCCCCeeEECCC----------------------------------CCc----ccccHHHHHHHHHHcCCC
Confidence 356899999888999886421 123 799999999999999998
Q ss_pred -EEEEEec
Q psy13438 138 -YELVRVE 144 (154)
Q Consensus 138 -Yel~lv~ 144 (154)
+++...+
T Consensus 53 ~~~~~~~~ 60 (257)
T 2q88_A 53 DVVASISE 60 (257)
T ss_dssp EEEEEECC
T ss_pred eeeEEeCC
Confidence 8887653
No 25
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0
Probab=95.54 E-value=0.03 Score=41.19 Aligned_cols=49 Identities=18% Similarity=0.226 Sum_probs=38.9
Q ss_pred CCceEEEEee-ccCCeEEEcCCCCCCCcccCcCceeeeecCCCCcchhhhhhccCCCccccccccchHHHHHHHHHHhCC
Q psy13438 58 EKFHLKITFL-EEAPYIQMSPPDPVTGKCNMNRGVICRVAGDADMDKIDVAMAHHNESFYQCCSGFCIDLLGKFAEELGF 136 (154)
Q Consensus 58 ~~~~LrVvTi-~e~PfV~~~~~~~~~g~C~~~~~v~c~~~~~~~~~~~~~~~~~gn~~~~~Cc~G~cIDLL~~La~~l~F 136 (154)
...+|+|++. .-+||.+..+. ... .||.+||++++++.+|.
T Consensus 9 ~~~~l~v~~~~~~~P~~~~~~~----------------------------------g~~----~G~~~dl~~~i~~~~g~ 50 (234)
T 3h7m_A 9 RHRTIVVGGDRDYPPYEFIDQN----------------------------------GKP----AGYNVELTRAIAEVMGM 50 (234)
T ss_dssp SSSCEEEEEETEETTTEEECTT----------------------------------SCE----ESHHHHHHHHHHHHHTC
T ss_pred CCCEEEEEecCCCCCeEEECCC----------------------------------CCE----eeeEHHHHHHHHHHcCC
Confidence 4578999985 57999987421 123 79999999999999999
Q ss_pred eEEEEEec
Q psy13438 137 TYELVRVE 144 (154)
Q Consensus 137 ~Yel~lv~ 144 (154)
++++...+
T Consensus 51 ~~~~~~~~ 58 (234)
T 3h7m_A 51 TVEFRLGA 58 (234)
T ss_dssp CEEEEEEC
T ss_pred ceEEEeCC
Confidence 99998653
No 26
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp}
Probab=95.46 E-value=0.036 Score=40.74 Aligned_cols=48 Identities=19% Similarity=0.237 Sum_probs=38.0
Q ss_pred CCceEEEEee-ccCCeEEEcCCCCCCCcccCcCceeeeecCCCCcchhhhhhccCCCccccccccchHHHHHHHHHHhCC
Q psy13438 58 EKFHLKITFL-EEAPYIQMSPPDPVTGKCNMNRGVICRVAGDADMDKIDVAMAHHNESFYQCCSGFCIDLLGKFAEELGF 136 (154)
Q Consensus 58 ~~~~LrVvTi-~e~PfV~~~~~~~~~g~C~~~~~v~c~~~~~~~~~~~~~~~~~gn~~~~~Cc~G~cIDLL~~La~~l~F 136 (154)
...+|+|++. .-+||.+..+. ... .||.+||++++++.+|+
T Consensus 4 ~a~~l~v~~~~~~~P~~~~~~~----------------------------------g~~----~G~~~dl~~~i~~~~g~ 45 (229)
T 2y7i_A 4 SARTLHFGTSATYAPYEFVDAD----------------------------------NKI----VGFDIDVANAVCKEMQA 45 (229)
T ss_dssp SCCEEEEEECCCBTTTBEECTT----------------------------------SCE----ESHHHHHHHHHHHHTTC
T ss_pred cCCcEEEEeCCCcCCceEECCC----------------------------------CCC----cceeHHHHHHHHHHhCC
Confidence 3468999986 56999876421 123 79999999999999999
Q ss_pred eEEEEEe
Q psy13438 137 TYELVRV 143 (154)
Q Consensus 137 ~Yel~lv 143 (154)
++++...
T Consensus 46 ~~~~~~~ 52 (229)
T 2y7i_A 46 ECSFTNQ 52 (229)
T ss_dssp EEEEEEC
T ss_pred eEEEEEc
Confidence 9998875
No 27
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae}
Probab=95.36 E-value=0.013 Score=43.70 Aligned_cols=47 Identities=11% Similarity=0.282 Sum_probs=37.3
Q ss_pred CCceEEEEee-ccCCeEEEcCCCCCCCcccCcCceeeeecCCCCcchhhhhhccCCCccccccccchHHHHHHHHHHhC-
Q psy13438 58 EKFHLKITFL-EEAPYIQMSPPDPVTGKCNMNRGVICRVAGDADMDKIDVAMAHHNESFYQCCSGFCIDLLGKFAEELG- 135 (154)
Q Consensus 58 ~~~~LrVvTi-~e~PfV~~~~~~~~~g~C~~~~~v~c~~~~~~~~~~~~~~~~~gn~~~~~Cc~G~cIDLL~~La~~l~- 135 (154)
...+|+|++. .-+||.+. +. ... .||++||+++|++.+|
T Consensus 6 ~~~~l~v~~~~~~~P~~~~-~~----------------------------------g~~----~G~~~dl~~~i~~~~g~ 46 (246)
T 4eq9_A 6 SKKEIIVATNGSPRPFIYE-EN----------------------------------GEL----TGYEIEVVRAIFKDSDK 46 (246)
T ss_dssp -CEEEEEEECCCSTTTSEE-ET----------------------------------TEE----ESHHHHHHHHHHTTCSS
T ss_pred CCCEEEEEeCCCcCCeEEc-CC----------------------------------CCC----cccHHHHHHHHHHHcCC
Confidence 4578999998 56999884 21 123 7999999999999999
Q ss_pred CeEEEEEe
Q psy13438 136 FTYELVRV 143 (154)
Q Consensus 136 F~Yel~lv 143 (154)
+++++..+
T Consensus 47 ~~~~~~~~ 54 (246)
T 4eq9_A 47 YDVKFEKT 54 (246)
T ss_dssp EEEEEEEC
T ss_pred ceEEEEeC
Confidence 99998865
No 28
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A
Probab=95.30 E-value=0.026 Score=41.22 Aligned_cols=24 Identities=42% Similarity=0.668 Sum_probs=22.3
Q ss_pred ccchHHHHHHHHHHhCCeEEEEEe
Q psy13438 120 SGFCIDLLGKFAEELGFTYELVRV 143 (154)
Q Consensus 120 ~G~cIDLL~~La~~l~F~Yel~lv 143 (154)
.||.+||++++++.+|+++++...
T Consensus 25 ~G~~~dl~~~~~~~~g~~~~~~~~ 48 (226)
T 1wdn_A 25 VGFDVDLWAAIAKELKLDYELKPM 48 (226)
T ss_dssp ESHHHHHHHHHHHHHTCCEEEEEE
T ss_pred EEeeHHHHHHHHHHhCCEEEEEEC
Confidence 799999999999999999999865
No 29
>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis}
Probab=95.22 E-value=0.03 Score=43.17 Aligned_cols=52 Identities=13% Similarity=0.261 Sum_probs=40.0
Q ss_pred CCceEEEEee-ccCCeEEEcCCCCCCCcccCcCceeeeecCCCCcchhhhhhccCCCccccccccchHHHHHHHHHHhCC
Q psy13438 58 EKFHLKITFL-EEAPYIQMSPPDPVTGKCNMNRGVICRVAGDADMDKIDVAMAHHNESFYQCCSGFCIDLLGKFAEELGF 136 (154)
Q Consensus 58 ~~~~LrVvTi-~e~PfV~~~~~~~~~g~C~~~~~v~c~~~~~~~~~~~~~~~~~gn~~~~~Cc~G~cIDLL~~La~~l~F 136 (154)
...+|+|++. ..+||.+..+.. |.... .||.+||++++++.+|+
T Consensus 19 ~~~~l~v~~~~~~pP~~~~~~~~-------------------------------~~g~~----~G~~~dl~~~i~~~~g~ 63 (271)
T 2iee_A 19 DKGKIVVATSGTLYPTSYHDTDS-------------------------------GSDKL----TGYEVEVVREAAKRLGL 63 (271)
T ss_dssp HHTEEEEEECSCBTTTBEEETTT-------------------------------TCCEE----ECHHHHHHHHHHHHTTC
T ss_pred cCCeEEEEECCCCCCeeEeCCCC-------------------------------CCCCc----eeeHHHHHHHHHHHcCC
Confidence 3578999997 689999864320 01233 79999999999999999
Q ss_pred eEEEEEec
Q psy13438 137 TYELVRVE 144 (154)
Q Consensus 137 ~Yel~lv~ 144 (154)
++++...+
T Consensus 64 ~v~~~~~~ 71 (271)
T 2iee_A 64 KVEFKEMG 71 (271)
T ss_dssp EEEEEECC
T ss_pred eEEEEECC
Confidence 99998763
No 30
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A*
Probab=94.62 E-value=0.052 Score=41.65 Aligned_cols=49 Identities=27% Similarity=0.388 Sum_probs=38.3
Q ss_pred CCCceEEEEee-ccCCeEEEcCCCCCCCcccCcCceeeeecCCCCcchhhhhhccCCCccccccccchHHHHHHHHHHhC
Q psy13438 57 PEKFHLKITFL-EEAPYIQMSPPDPVTGKCNMNRGVICRVAGDADMDKIDVAMAHHNESFYQCCSGFCIDLLGKFAEELG 135 (154)
Q Consensus 57 ~~~~~LrVvTi-~e~PfV~~~~~~~~~g~C~~~~~v~c~~~~~~~~~~~~~~~~~gn~~~~~Cc~G~cIDLL~~La~~l~ 135 (154)
....+|+|.+. .-+||.+.. . ... .||.+||++++++.+|
T Consensus 39 ~~~~~l~v~~~~~~~P~~~~~-~----------------------------------g~~----~G~~~dl~~~i~~~~g 79 (272)
T 2pvu_A 39 ATKKKVVVGTDAAFAPFEYMQ-K----------------------------------GKI----VGFDVDLLDAVMKAAG 79 (272)
T ss_dssp CCCCCEEEEECCCBTTTBEEE-T----------------------------------TEE----ESHHHHHHHHHHHHHT
T ss_pred ccCCeEEEEECCCCCCeEEec-C----------------------------------CeE----EEEHHHHHHHHHHHhC
Confidence 35678999987 578998763 1 122 7999999999999999
Q ss_pred CeEEEEEec
Q psy13438 136 FTYELVRVE 144 (154)
Q Consensus 136 F~Yel~lv~ 144 (154)
+++++...+
T Consensus 80 ~~v~~~~~~ 88 (272)
T 2pvu_A 80 LDYELKNIG 88 (272)
T ss_dssp CCEEEEECC
T ss_pred CceEEEECC
Confidence 999987653
No 31
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=93.15 E-value=0.19 Score=39.01 Aligned_cols=48 Identities=19% Similarity=0.300 Sum_probs=38.7
Q ss_pred CceEEEEeec-cCCeEEEcCCCCCCCcccCcCceeeeecCCCCcchhhhhhccCCCccccccccchHHHHHHHHHHhCCe
Q psy13438 59 KFHLKITFLE-EAPYIQMSPPDPVTGKCNMNRGVICRVAGDADMDKIDVAMAHHNESFYQCCSGFCIDLLGKFAEELGFT 137 (154)
Q Consensus 59 ~~~LrVvTi~-e~PfV~~~~~~~~~g~C~~~~~v~c~~~~~~~~~~~~~~~~~gn~~~~~Cc~G~cIDLL~~La~~l~F~ 137 (154)
..+|+|.+.. .+||.+..+. ... .||.+||++++++.+|++
T Consensus 56 ~~~l~v~~~~~~~P~~~~~~~----------------------------------g~~----~G~~~dl~~~i~~~~G~~ 97 (283)
T 2yln_A 56 KGTVTVGTEGTYAPFTYHDKD----------------------------------GKL----TGYDVEVTRAVAEKLGVK 97 (283)
T ss_dssp TCEEEEEECSEETTTEEECTT----------------------------------SCE----ESHHHHHHHHHHHHHTCE
T ss_pred CCeEEEEECCCCCCeeEECCC----------------------------------CCE----eeehHHHHHHHHHHcCCc
Confidence 4689999976 8999986521 123 799999999999999999
Q ss_pred EEEEEec
Q psy13438 138 YELVRVE 144 (154)
Q Consensus 138 Yel~lv~ 144 (154)
+++...+
T Consensus 98 v~~~~~~ 104 (283)
T 2yln_A 98 VEFKETQ 104 (283)
T ss_dssp EEEEECC
T ss_pred eEEEECC
Confidence 9988764
No 32
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A*
Probab=92.93 E-value=0.2 Score=37.56 Aligned_cols=24 Identities=38% Similarity=0.522 Sum_probs=22.3
Q ss_pred ccchHHHHHHHHHHhCCeEEEEEe
Q psy13438 120 SGFCIDLLGKFAEELGFTYELVRV 143 (154)
Q Consensus 120 ~G~cIDLL~~La~~l~F~Yel~lv 143 (154)
.||.+||++++++++|+++++...
T Consensus 54 ~G~~~dl~~~i~~~~g~~~~~~~~ 77 (268)
T 3qax_A 54 VGFDIDLAKAISEKLGKQLEVREF 77 (268)
T ss_dssp ESHHHHHHHHHHHHHTCEEEEEEC
T ss_pred EEEEHHHHHHHHHHhCCeEEEEec
Confidence 799999999999999999998865
No 33
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae}
Probab=91.43 E-value=0.25 Score=36.96 Aligned_cols=24 Identities=38% Similarity=0.451 Sum_probs=22.3
Q ss_pred ccchHHHHHHHHHHhCCeEEEEEe
Q psy13438 120 SGFCIDLLGKFAEELGFTYELVRV 143 (154)
Q Consensus 120 ~G~cIDLL~~La~~l~F~Yel~lv 143 (154)
.||.+||++++++.+|.++++...
T Consensus 65 ~G~~~dl~~~~~~~~g~~~~~~~~ 88 (269)
T 4i62_A 65 VGSDIELAKAIATELGVELELSPM 88 (269)
T ss_dssp ESHHHHHHHHHHHHHTCEEEEEEC
T ss_pred eeecHHHHHHHHHHHCCceEEEEc
Confidence 799999999999999999998765
No 34
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=91.16 E-value=0.37 Score=35.69 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=22.7
Q ss_pred ccchHHHHHHHHHHh---CCeEEEEEec
Q psy13438 120 SGFCIDLLGKFAEEL---GFTYELVRVE 144 (154)
Q Consensus 120 ~G~cIDLL~~La~~l---~F~Yel~lv~ 144 (154)
.||.+||++++++.+ +.++++...+
T Consensus 62 ~G~~~~l~~~~~~~~~~pg~~v~~~~~~ 89 (259)
T 2v25_A 62 KGFEVDVAKLLAKSILGDDKKIKLVAVN 89 (259)
T ss_dssp ESHHHHHHHHHHHHHHSCTTSEEEEECC
T ss_pred EEeeHHHHHHHHHHhcCCCcceEEEEcC
Confidence 799999999999999 9999988754
No 35
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A*
Probab=90.72 E-value=0.49 Score=36.23 Aligned_cols=49 Identities=14% Similarity=0.285 Sum_probs=36.3
Q ss_pred CCceEEEEeec-cCCeEEEcCCCCCCCcccCcCceeeeecCCCCcchhhhhhccCCCccccccccchHHHHHHHHHH---
Q psy13438 58 EKFHLKITFLE-EAPYIQMSPPDPVTGKCNMNRGVICRVAGDADMDKIDVAMAHHNESFYQCCSGFCIDLLGKFAEE--- 133 (154)
Q Consensus 58 ~~~~LrVvTi~-e~PfV~~~~~~~~~g~C~~~~~v~c~~~~~~~~~~~~~~~~~gn~~~~~Cc~G~cIDLL~~La~~--- 133 (154)
...+|+|++.. .+||.+..+. ... .||.+||+++|++.
T Consensus 15 ~~~~l~v~~~~~~~P~~~~~~~----------------------------------g~~----~G~~~dl~~~ia~~l~~ 56 (287)
T 2vha_A 15 KNGVIVVGHRESSVPFSYYDNQ----------------------------------QKV----VGYSQDYSNAIVEAVKK 56 (287)
T ss_dssp HHTEEEEEECSEETTTEEECSS----------------------------------SCE----ESHHHHHHHHHHHHHHH
T ss_pred hCCeEEEEEcCCCCCceEECCC----------------------------------CCc----ccccHHHHHHHHHHHHH
Confidence 35689999874 7899986421 123 79999999999976
Q ss_pred -hC---CeEEEEEec
Q psy13438 134 -LG---FTYELVRVE 144 (154)
Q Consensus 134 -l~---F~Yel~lv~ 144 (154)
+| +++++...+
T Consensus 57 ~~G~~~~~v~~~~~~ 71 (287)
T 2vha_A 57 KLNKPDLQVKLIPIT 71 (287)
T ss_dssp HTTCTTCEEEEEECC
T ss_pred hcCCCCceEEEEECC
Confidence 46 788877653
No 36
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1
Probab=90.38 E-value=0.43 Score=36.82 Aligned_cols=25 Identities=36% Similarity=0.481 Sum_probs=23.0
Q ss_pred ccchHHHHHHHHHHh---CCeEEEEEec
Q psy13438 120 SGFCIDLLGKFAEEL---GFTYELVRVE 144 (154)
Q Consensus 120 ~G~cIDLL~~La~~l---~F~Yel~lv~ 144 (154)
.||.+||++++++.+ |+++++...+
T Consensus 67 ~G~~~dl~~~i~~~~~~~g~~~~~~~~~ 94 (292)
T 1xt8_A 67 QGYDIALAKRIAKELFGDENKVQFVLVE 94 (292)
T ss_dssp ESHHHHHHHHHHHHHHSCTTCEEEEECC
T ss_pred eeEhHHHHHHHHHHhccCCceEEEEEcC
Confidence 799999999999999 9999998764
No 37
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=88.24 E-value=0.63 Score=36.09 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=22.9
Q ss_pred ccchHHHHHHHHHHh---CCeEEEEEec
Q psy13438 120 SGFCIDLLGKFAEEL---GFTYELVRVE 144 (154)
Q Consensus 120 ~G~cIDLL~~La~~l---~F~Yel~lv~ 144 (154)
.||.+||++++++.+ |.++++...+
T Consensus 78 ~G~~~dl~~~i~~~~~~~g~~v~~~~~~ 105 (291)
T 2yjp_A 78 QGFDVEIAKDLAKDLLGSPDKVEFVLTE 105 (291)
T ss_dssp ESHHHHHHHHHHHHHHSCGGGEEEEECC
T ss_pred eehHHHHHHHHHHHhccCCceEEEEEcc
Confidence 799999999999999 9999998764
No 38
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A*
Probab=75.65 E-value=3 Score=34.02 Aligned_cols=38 Identities=18% Similarity=0.294 Sum_probs=28.4
Q ss_pred eeeEEEEeeeCCccCCeEEEEEcCcCCCceeEe--eecCCCCCC
Q psy13438 9 MIIEIELFHPTIFTSGICIGVWKSWEKEGLDIK--DIVWPGNSH 50 (154)
Q Consensus 9 ~~~~i~~~~~~~~~~~~~vG~W~~~~~~~L~~~--~~~wpg~~~ 50 (154)
..+.|++++.+.+. +||.|++. ...|.+. .+.|++++.
T Consensus 383 ~~~~I~~~~~g~~~---~VG~~~~~-~~~l~~~~~~i~W~~~~~ 422 (433)
T 4f11_A 383 GTIKFTQFQDSREV---KVGEYNAV-ADTLEIINDTIRFQGSEP 422 (433)
T ss_dssp CEEEEEEEETTEEE---EEEEEETT-TTEEEECTTTCCCSSSSC
T ss_pred eeEEEEEEECCceE---EEEEEECC-CCeEEEeCCceECCCCCC
Confidence 56888888876665 99999874 3567774 488998863
No 39
>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth FACT receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A* 3a3k_A*
Probab=57.54 E-value=14 Score=29.79 Aligned_cols=36 Identities=11% Similarity=0.153 Sum_probs=24.2
Q ss_pred eeeEEEEee--eCCccCCeEEEEEcCcCCCceeE---eeecCCCC
Q psy13438 9 MIIEIELFH--PTIFTSGICIGVWKSWEKEGLDI---KDIVWPGN 48 (154)
Q Consensus 9 ~~~~i~~~~--~~~~~~~~~vG~W~~~~~~~L~~---~~~~wpg~ 48 (154)
..++|+++. .+.+ ++||.|+++. ..|.+ +.+.||++
T Consensus 374 ~~~~i~~~~~~~g~~---~~vg~~~~~~-~~l~~~~~~~i~W~~~ 414 (435)
T 1dp4_A 374 TDFSLWDMDPETGAF---RVVLNYNGTS-QELMAVSEHKLYWPLG 414 (435)
T ss_dssp CCEEEEEECTTTCCE---EEEEEECTTT-CCEEESTTCCCCCTTS
T ss_pred ceeEEEEecCCCCcE---EEEEEecCCC-ceEEEcCCceeeCCCC
Confidence 357777772 2223 4899999864 36666 46899887
No 40
>1f3k_A Omega-conotoxin txvii; cystine knot motif, triple-stranded antiparallel beta-sheet, L-type calcium channel blocker; NMR {Synthetic} SCOP: g.3.6.1
Probab=46.93 E-value=3.5 Score=21.87 Aligned_cols=9 Identities=44% Similarity=1.748 Sum_probs=7.2
Q ss_pred ccccccchH
Q psy13438 116 YQCCSGFCI 124 (154)
Q Consensus 116 ~~Cc~G~cI 124 (154)
-.||.|+|+
T Consensus 13 qnCC~G~C~ 21 (26)
T 1f3k_A 13 LDCCTGICL 21 (26)
T ss_dssp CCSTTSCCS
T ss_pred ccccccEEE
Confidence 359999996
No 41
>1dkc_A PAFP-S, antifungal peptide; three-strands beta sheet, antifungal protein; NMR {Phytolacca americana} SCOP: g.3.4.2
Probab=40.12 E-value=12 Score=21.76 Aligned_cols=12 Identities=33% Similarity=0.971 Sum_probs=8.9
Q ss_pred CccccccccchH
Q psy13438 113 ESFYQCCSGFCI 124 (154)
Q Consensus 113 ~~~~~Cc~G~cI 124 (154)
.....||+|||.
T Consensus 14 gs~g~CcSGfC~ 25 (38)
T 1dkc_A 14 AGPPYCCSSYCF 25 (38)
T ss_dssp SCCCCCSSSEEE
T ss_pred CCCcccccceeE
Confidence 344679999994
No 42
>1q3j_A ALO3; peptide, knottin, cystine-knot, antifungal protein; NMR {Synthetic} SCOP: g.3.4.2
Probab=37.44 E-value=13 Score=21.39 Aligned_cols=11 Identities=55% Similarity=1.286 Sum_probs=8.5
Q ss_pred ccccccccchH
Q psy13438 114 SFYQCCSGFCI 124 (154)
Q Consensus 114 ~~~~Cc~G~cI 124 (154)
....||+|||.
T Consensus 13 s~g~CcSGfC~ 23 (36)
T 1q3j_A 13 SQGNCCSGYCH 23 (36)
T ss_dssp SSCCCTTSCEE
T ss_pred CCcccccceeE
Confidence 44679999994
No 43
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} SCOP: c.93.1.1 PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A*
Probab=36.42 E-value=23 Score=29.92 Aligned_cols=42 Identities=19% Similarity=0.197 Sum_probs=20.6
Q ss_pred eeeEEEEeee--CCccCCeEEEEEcCcCCCceeEee-ecCCCCCCCCC
Q psy13438 9 MIIEIELFHP--TIFTSGICIGVWKSWEKEGLDIKD-IVWPGNSHTPP 53 (154)
Q Consensus 9 ~~~~i~~~~~--~~~~~~~~vG~W~~~~~~~L~~~~-~~wpg~~~~~p 53 (154)
..|+|+++.. +.....++||.|+. ..|.++. .+|..+....|
T Consensus 450 ~~YdI~n~~~~~~~~~~~~~VG~~~~---~~l~i~~~~iw~~~~~~vP 494 (496)
T 3ks9_A 450 GRYDIMNLQYTEANRYDYVHVGTWHE---GVLNIDDYKIQMNKSGLVP 494 (496)
T ss_dssp CEEEEEEEEECC--CEEEEEEEEEET---TEEEECTTTC---------
T ss_pred ceEEEEEEEECCCCCEEEEEEEEEeC---CeEEEehhhcccCCCCCCC
Confidence 5799999874 23233368999974 4677643 23665543334
No 44
>3vp7_A Vacuolar protein sorting-associated protein 30; targeting, PI3-kinase complex I, PRE-autophagosomal structur protein transport; 2.30A {Saccharomyces cerevisiae}
Probab=26.45 E-value=27 Score=27.60 Aligned_cols=29 Identities=21% Similarity=0.180 Sum_probs=24.5
Q ss_pred ccchHHHHHHHHHHhCCeEE-EEEecCCCC
Q psy13438 120 SGFCIDLLGKFAEELGFTYE-LVRVEDGKW 148 (154)
Q Consensus 120 ~G~cIDLL~~La~~l~F~Ye-l~lv~DGky 148 (154)
-|.+.=||.-||+.++|.|+ +.++|-|.|
T Consensus 41 wGq~~LLL~tla~kl~~~f~~Y~L~PmGS~ 70 (220)
T 3vp7_A 41 LGQLILLLATINKNLKINLVDYELQPMGSF 70 (220)
T ss_dssp HHHHHHHHHHHHHHTTCCCSSEEEECCGGG
T ss_pred HHHHHHHHHHHHHHhCCCcccceEEeCCCc
Confidence 48999999999999999985 678886654
No 45
>3ady_A DOTD; 3-layer(BAB) sandwich, MTH1598-like, proton transport; 2.00A {Legionella pneumophila}
Probab=22.89 E-value=62 Score=23.95 Aligned_cols=27 Identities=19% Similarity=0.221 Sum_probs=22.6
Q ss_pred cccccccchHHHHHHHHHHhCCeEEEE
Q psy13438 115 FYQCCSGFCIDLLGKFAEELGFTYELV 141 (154)
Q Consensus 115 ~~~Cc~G~cIDLL~~La~~l~F~Yel~ 141 (154)
...=|.|=...||++||+..|++|.+.
T Consensus 68 vs~dW~Gp~eelL~~LA~~~Gy~f~v~ 94 (148)
T 3ady_A 68 ASVDWSGPIEELTARIAKAAHFRFRVL 94 (148)
T ss_dssp EEEEEEEEHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEeeCCHHHHHHHHHHHcCceEEec
Confidence 344568999999999999999988773
No 46
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A*
Probab=22.46 E-value=88 Score=25.19 Aligned_cols=40 Identities=10% Similarity=0.037 Sum_probs=18.5
Q ss_pred eeeEEEEeeeCCccCCeEEEEEcCcCCCceeE---eeecCCCCC
Q psy13438 9 MIIEIELFHPTIFTSGICIGVWKSWEKEGLDI---KDIVWPGNS 49 (154)
Q Consensus 9 ~~~~i~~~~~~~~~~~~~vG~W~~~~~~~L~~---~~~~wpg~~ 49 (154)
..++|++++...-...++||.|+++. ..+.+ ..+.||+++
T Consensus 371 ~~~~I~~~~~~~~g~~~~VG~~~~~~-~~~~~~~~~~i~w~g~~ 413 (441)
T 1jdp_A 371 GDFSVIAMTDVEAGTQEVIGDYFGKE-GRFEMRPNVKYPWGPLK 413 (441)
T ss_dssp CEEEEEEEEETTTTEEEEEEEEETTT-TEEEECC----------
T ss_pred ccEEEEecccCCCCceEEEEEEcCCC-CeEEECCCceeeCCCCC
Confidence 46777777542111235899999863 45555 346788764
Done!