RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13438
(154 letters)
>d2a5sa1 c.94.1.1 (A:7-142,A:145-285) N-methyl-D-aspartate receptor
subunit 1 {Rat (Rattus norvegicus), subtype 2A [TaxId:
10116]}
Length = 277
Score = 79.3 bits (194), Expect = 4e-19
Identities = 33/93 (35%), Positives = 48/93 (51%), Gaps = 7/93 (7%)
Query: 61 HLKITFLEEAPYIQMSPPDPVTGKCNMNRGVICRVAGDADMDKIDVAMAHHNESFYQCCS 120
HL I LEEAP++ + DP+T C N V CR + + + +CC
Sbjct: 2 HLSIVTLEEAPFVIVEDIDPLTETCVRN-TVPCRKFVKIN------NSTNEGMNVKKCCK 54
Query: 121 GFCIDLLGKFAEELGFTYELVRVEDGKWGTQED 153
GFCID+L K + + FTY+L V +GK G + +
Sbjct: 55 GFCIDILKKLSRTVKFTYDLYLVTNGKHGKKVN 87
>d1pb7a_ c.94.1.1 (A:) N-methyl-D-aspartate receptor subunit 1 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 289
Score = 63.1 bits (152), Expect = 3e-13
Identities = 33/93 (35%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
Query: 61 HLKITFLEEAPYIQMSPPDPVTGKCNMNRGVICRVAGDA-DMDKIDVAMAHHNESFYQCC 119
LKI + + P++ + P G C V D + + QCC
Sbjct: 2 RLKIVTIHQEPFVYVKPTMS-DGTCKEEFTVNGDPVKKVICTGPNDTSPGSPRHTVPQCC 60
Query: 120 SGFCIDLLGKFAEELGFTYELVRVEDGKWGTQE 152
GFCIDLL K A + FTYE+ V DGK+GTQE
Sbjct: 61 YGFCIDLLIKLARTMNFTYEVHLVADGKFGTQE 93
>d1mqia_ c.94.1.1 (A:) Glutamate receptor ligand binding core {Rat
(Rattus norvegicus), GluR2 [TaxId: 10116]}
Length = 260
Score = 40.4 bits (93), Expect = 3e-05
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 120 SGFCIDLLGKFAEELGFTYELVRVEDGKWGTQE 152
G+C+DL + A+ GF Y+L V DGK+G ++
Sbjct: 31 EGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARD 63
>d2f34a1 c.94.1.1 (A:5-116,A:119-252) Glutamate receptor ligand
binding core {Rat (Rattus norvegicus), GluR5 [TaxId:
10116]}
Length = 246
Score = 38.6 bits (88), Expect = 1e-04
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 120 SGFCIDLLGKFAEELGFTYELVRVEDGKWGTQ 151
G+C+DLL + + LGF Y++ V DGK+G Q
Sbjct: 29 EGYCLDLLKELSNILGFLYDVKLVPDGKYGAQ 60
>d1ii5a_ c.94.1.1 (A:) Glutamate receptor ligand binding core
{Synechocystis sp., GluR0 [TaxId: 1143]}
Length = 226
Score = 29.0 bits (63), Expect = 0.21
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 120 SGFCIDLLGKFAEELGFTYELVRVED 145
+G +D+ AE + E VR
Sbjct: 28 TGISLDVWRAVAESQKWNSEYVRQNS 53
>g1q7l.1 c.56.5.4 (A:,B:) Aminoacylase-1, catalytic domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 280
Score = 28.1 bits (62), Expect = 0.35
Identities = 6/25 (24%), Positives = 10/25 (40%)
Query: 123 CIDLLGKFAEELGFTYELVRVEDGK 147
+ + A +LG + V V G
Sbjct: 28 AVAFFEETARQLGLGCQKVEVAPGY 52
>d1dp4a_ c.93.1.1 (A:) Hormone binding domain of the atrial
natriuretic peptide receptor {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 425
Score = 28.2 bits (61), Expect = 0.42
Identities = 7/34 (20%), Positives = 15/34 (44%), Gaps = 4/34 (11%)
Query: 27 IGVWKSWEKEGLDIKD--IVWPGNSHTPPQGVPE 58
+ + +E + + + + WP PP VP+
Sbjct: 391 VLNYNGTSQELMAVSEHKLYWPLGY--PPPDVPK 422
>d1wdna_ c.94.1.1 (A:) Glutamine-binding protein {Escherichia coli
[TaxId: 562]}
Length = 223
Score = 28.0 bits (61), Expect = 0.45
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 120 SGFCIDLLGKFAEELGFTYELV 141
GF +DL A+EL YEL
Sbjct: 22 VGFDVDLWAAIAKELKLDYELK 43
>d1kl7a_ c.79.1.1 (A:) Threonine synthase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 511
Score = 27.7 bits (61), Expect = 0.57
Identities = 7/70 (10%), Positives = 19/70 (27%), Gaps = 5/70 (7%)
Query: 85 CNMNRGVICRVAGDADMDKIDVAMA-----HHNESFYQCCSGFCIDLLGKFAEELGFTYE 139
+ + ++ D + S + + I+ A+ + Y
Sbjct: 197 TTVPDENVQTLSVTGTFDNCQDIVKAIFGDKEFNSKHNVGAVNSINWARILAQMTYYFYS 256
Query: 140 LVRVEDGKWG 149
+ +GK
Sbjct: 257 FFQATNGKDS 266
>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 141
Score = 25.7 bits (56), Expect = 1.9
Identities = 10/58 (17%), Positives = 18/58 (31%), Gaps = 7/58 (12%)
Query: 43 IVWPGNSHTPPQGVPEKFHLKITFLEE----APYIQMSPPDPVTGKCNMN---RGVIC 93
+ G P +G + + L+ P + P +T K + G I
Sbjct: 51 MNLTGTIPVPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKHVDANGKIY 108
>d1vgya1 c.56.5.4 (A:2-180,A:294-376) Succinyl-diaminopimelate
desuccinylase, catalytic domain {Neisseria meningitidis
[TaxId: 487]}
Length = 262
Score = 25.3 bits (54), Expect = 4.1
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 123 CIDLLGKFAEELGFTYELVRVEDGK 147
C L+ + ++GF E + + K
Sbjct: 25 CQKLMAERLHKIGFAAEEMHFGNTK 49
>d1xa1a_ e.3.1.1 (A:) Regulatory protein BlaR1 {Staphylococcus
aureus [TaxId: 1280]}
Length = 246
Score = 24.7 bits (53), Expect = 5.3
Identities = 7/80 (8%), Positives = 20/80 (25%)
Query: 70 APYIQMSPPDPVTGKCNMNRGVICRVAGDADMDKIDVAMAHHNESFYQCCSGFCIDLLGK 129
+ + + + N A + + D N F + +
Sbjct: 60 MFGLDRHIINDENSRMSWNHKHYPFDAWNKEQDLNTAMQNSVNWYFERISDQIPKNYTAT 119
Query: 130 FAEELGFTYELVRVEDGKWG 149
++L + + + W
Sbjct: 120 QLKQLNYGNKNLGSYKSYWM 139
>d2qgma1 c.150.1.3 (A:33-445) Succinoglycan biosynthesis protein
BC3205 {Bacillus cereus [TaxId: 1396]}
Length = 413
Score = 24.6 bits (53), Expect = 5.8
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 33 WEKEGLDIKDIVWPGNSH 50
W +E K +VW N H
Sbjct: 260 WAQETFGGKTMVWAHNIH 277
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.141 0.460
Gapped
Lambda K H
0.267 0.0524 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 667,046
Number of extensions: 31655
Number of successful extensions: 98
Number of sequences better than 10.0: 1
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 18
Length of query: 154
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 76
Effective length of database: 1,336,656
Effective search space: 101585856
Effective search space used: 101585856
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.1 bits)