Query psy13439
Match_columns 261
No_of_seqs 196 out of 2132
Neff 7.9
Searched_HMMs 29240
Date Fri Aug 16 19:26:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13439.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13439hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kg2_A Glutamate receptor 2; I 100.0 3.1E-33 1.1E-37 277.6 2.9 206 9-260 422-631 (823)
2 1yae_A Glutamate receptor, ion 99.1 7.9E-11 2.7E-15 103.7 6.0 88 10-97 52-142 (312)
3 2rc8_A Glutamate [NMDA] recept 99.1 1.3E-10 4.4E-15 101.7 6.6 82 10-91 79-161 (294)
4 2a5s_A N-methyl-D-aspartate re 99.0 2.2E-10 7.7E-15 99.7 6.8 80 10-89 68-147 (284)
5 1pb7_A N-methyl-D-aspartate re 99.0 3E-10 1E-14 99.4 6.3 82 10-91 74-161 (292)
6 3g3k_A Glutamate receptor, ion 98.9 7.2E-10 2.5E-14 94.1 5.9 84 9-92 42-127 (259)
7 2v3u_A Glutamate receptor delt 98.8 2.9E-09 1E-13 90.3 6.3 83 10-92 40-123 (265)
8 1mqi_A Glutamate receptor 2; G 98.8 5.5E-09 1.9E-13 88.8 5.8 82 10-91 43-126 (263)
9 4h5g_A Amino acid ABC superfam 98.3 9.4E-07 3.2E-11 74.4 6.3 83 31-122 58-142 (243)
10 4gvo_A LMO2349 protein; struct 98.2 2E-06 7E-11 72.3 6.2 61 31-91 53-115 (243)
11 3kzg_A Arginine 3RD transport 98.1 5.9E-06 2E-10 68.6 6.6 58 34-91 50-107 (237)
12 3i6v_A Periplasmic His/Glu/Gln 98.0 7.6E-06 2.6E-10 68.1 5.6 53 32-84 49-101 (232)
13 1lst_A Lysine, arginine, ornit 98.0 9.7E-06 3.3E-10 67.0 5.9 81 33-122 49-130 (239)
14 3tql_A Arginine-binding protei 98.0 2E-05 6.8E-10 64.2 7.7 81 33-122 47-128 (227)
15 4eq9_A ABC transporter substra 97.9 1.4E-05 4.7E-10 66.3 6.6 80 32-120 52-132 (246)
16 3k4u_A Binding component of AB 97.9 1.5E-05 5E-10 66.5 6.6 82 34-122 51-134 (245)
17 3hv1_A Polar amino acid ABC up 97.9 1.2E-05 4.1E-10 68.1 6.1 80 31-119 64-143 (268)
18 3kbr_A Cyclohexadienyl dehydra 97.9 8E-06 2.8E-10 67.7 4.4 85 31-122 58-144 (239)
19 2iee_A ORF2, probable ABC tran 97.8 1.7E-05 5.8E-10 67.6 5.0 78 32-118 68-147 (271)
20 4dz1_A DALS D-alanine transpor 97.8 1.9E-05 6.6E-10 66.7 5.2 82 32-122 73-156 (259)
21 1wdn_A GLNBP, glutamine bindin 97.8 2.7E-05 9.1E-10 63.4 5.3 80 33-121 47-127 (226)
22 2vha_A Periplasmic binding tra 97.8 3E-05 1E-09 66.3 5.9 60 32-91 68-127 (287)
23 2y7i_A STM4351; arginine-bindi 97.7 5.3E-05 1.8E-09 61.9 6.9 79 33-121 51-130 (229)
24 1ii5_A SLR1257 protein; membra 97.7 2.7E-05 9.4E-10 63.8 5.1 57 35-91 53-113 (233)
25 4f3p_A Glutamine-binding perip 97.7 3E-05 1E-09 64.8 5.4 81 33-122 68-149 (249)
26 3del_B Arginine binding protei 97.7 4.5E-05 1.5E-09 63.2 6.3 79 32-120 55-135 (242)
27 2ozz_A Hypothetical protein YH 97.7 1.5E-05 5.1E-10 67.7 3.0 56 29-84 46-108 (231)
28 2q88_A EHUB, putative ABC tran 97.7 3.7E-05 1.3E-09 64.4 5.2 60 32-91 57-118 (257)
29 2pvu_A ARTJ; basic amino acid 97.7 5E-05 1.7E-09 64.5 5.9 83 31-122 84-166 (272)
30 1xt8_A Putative amino-acid tra 97.6 8.1E-05 2.8E-09 63.9 6.5 61 31-91 90-150 (292)
31 2yjp_A Putative ABC transporte 97.6 8.4E-05 2.9E-09 64.1 6.4 83 31-122 101-183 (291)
32 2yln_A Putative ABC transporte 97.6 8.9E-05 3.1E-09 63.7 6.4 62 31-92 100-162 (283)
33 2v25_A Major cell-binding fact 97.6 7.7E-05 2.6E-09 62.1 5.8 61 31-91 85-145 (259)
34 2pyy_A Ionotropic glutamate re 97.6 8.7E-05 3E-09 60.4 5.8 50 35-84 49-98 (228)
35 4i62_A Amino acid ABC transpor 97.6 0.00011 3.7E-09 61.6 6.5 83 31-122 85-169 (269)
36 3mpk_A Virulence sensor protei 97.5 0.00015 5.1E-09 61.5 6.6 80 33-122 78-158 (267)
37 3h7m_A Sensor protein; histidi 97.5 9.2E-05 3.2E-09 60.6 4.7 58 33-91 56-114 (234)
38 3qax_A Probable ABC transporte 97.4 0.00021 7.2E-09 59.8 6.3 59 32-91 75-136 (268)
39 2ih3_C Voltage-gated potassium 97.1 0.00082 2.8E-08 51.2 5.8 59 190-248 60-118 (122)
40 2k1e_A Water soluble analogue 96.9 0.00039 1.3E-08 51.3 2.4 59 191-249 40-98 (103)
41 2a9h_A Voltage-gated potassium 96.8 0.0031 1.1E-07 50.1 6.7 59 191-249 84-142 (155)
42 4h33_A LMO2059 protein; bilaye 95.9 0.011 3.9E-07 45.7 5.4 57 191-247 43-99 (137)
43 3eff_K Voltage-gated potassium 95.6 0.021 7E-07 44.1 5.9 59 189-247 38-96 (139)
44 3ouf_A Potassium channel prote 95.4 0.013 4.5E-07 42.6 3.9 61 190-250 31-91 (97)
45 3pjs_K KCSA, voltage-gated pot 95.1 0.0062 2.1E-07 48.7 1.3 59 189-247 65-123 (166)
46 2q67_A Potassium channel prote 95.0 0.03 1E-06 41.9 4.8 57 191-247 49-105 (114)
47 3ldc_A Calcium-gated potassium 94.8 0.034 1.2E-06 38.9 4.5 54 191-244 28-81 (82)
48 1orq_C Potassium channel; volt 94.0 0.07 2.4E-06 44.2 5.3 59 189-247 163-221 (223)
49 3vou_A ION transport 2 domain 93.6 0.1 3.4E-06 40.6 5.3 55 191-245 52-106 (148)
50 1xl4_A Inward rectifier potass 92.2 0.16 5.4E-06 44.5 5.1 62 189-250 80-141 (301)
51 3uif_A Sulfonate ABC transport 91.9 0.2 6.7E-06 43.9 5.4 58 34-91 55-116 (348)
52 2qks_A KIR3.1-prokaryotic KIR 91.3 0.17 5.9E-06 44.7 4.3 60 191-250 78-137 (321)
53 1p7b_A Integral membrane chann 91.2 0.14 4.8E-06 45.5 3.6 61 190-250 95-155 (333)
54 2r9r_B Paddle chimera voltage 90.5 0.32 1.1E-05 45.7 5.6 58 189-246 373-430 (514)
55 3qsl_A Putative exported prote 90.0 0.24 8.1E-06 42.7 4.0 60 33-92 71-136 (346)
56 3um7_A Potassium channel subfa 89.3 0.41 1.4E-05 42.0 4.9 58 189-246 113-170 (309)
57 3beh_A MLL3241 protein; transm 88.9 0.34 1.2E-05 42.8 4.3 56 191-246 161-216 (355)
58 3ix1_A N-formyl-4-amino-5-amin 88.5 0.33 1.1E-05 41.3 3.7 55 37-91 45-103 (302)
59 2x26_A Periplasmic aliphatic s 87.9 0.58 2E-05 39.7 4.9 54 37-91 43-102 (308)
60 1lnq_A MTHK channels, potassiu 87.8 0.12 4.3E-06 45.3 0.6 58 191-248 45-102 (336)
61 3ukm_A Potassium channel subfa 86.1 0.52 1.8E-05 40.8 3.6 70 190-259 200-276 (280)
62 3ukm_A Potassium channel subfa 85.5 0.91 3.1E-05 39.2 4.8 59 188-246 90-148 (280)
63 4gx0_A TRKA domain protein; me 84.6 0.8 2.7E-05 43.1 4.4 54 191-244 51-105 (565)
64 3n5l_A Binding protein compone 84.4 0.59 2E-05 40.5 3.2 61 33-93 43-111 (310)
65 3p7i_A PHND, subunit of alkylp 83.9 0.63 2.1E-05 40.7 3.1 59 33-93 53-121 (321)
66 2nr1_A NR1 M2, M2; receptor, s 83.5 0.3 1E-05 26.4 0.5 22 187-208 4-25 (27)
67 3un6_A Hypothetical protein sa 82.3 0.84 2.9E-05 39.7 3.3 59 33-91 89-150 (341)
68 3ksx_A Nitrate transport prote 74.1 2.2 7.5E-05 36.5 3.4 57 35-91 67-128 (324)
69 4ddd_A Immunogenic protein; ss 72.8 2.9 9.9E-05 36.4 3.9 58 35-92 75-144 (327)
70 3sya_A G protein-activated inw 72.2 4.1 0.00014 36.1 4.7 62 189-250 89-152 (340)
71 3um7_A Potassium channel subfa 67.0 3.7 0.00013 35.9 3.2 55 191-245 224-284 (309)
72 1zbm_A Hypothetical protein AF 66.4 3.1 0.00011 34.7 2.6 54 31-84 42-98 (280)
73 1atg_A MODA, periplasmic molyb 65.9 8.9 0.0003 30.0 5.2 61 35-95 35-102 (231)
74 2y7p_A LYSR-type regulatory pr 65.1 11 0.00038 29.6 5.7 52 31-86 41-92 (218)
75 3spc_A Inward-rectifier K+ cha 62.3 6.2 0.00021 35.0 3.8 62 189-250 92-155 (343)
76 2x7q_A Ca3427, possible thiami 62.2 6 0.00021 33.8 3.7 55 38-92 57-118 (321)
77 1us5_A Putative GLUR0 ligand b 56.4 9.4 0.00032 32.1 3.9 59 35-93 59-130 (314)
78 1twy_A ABC transporter, peripl 53.1 21 0.00071 28.9 5.5 53 32-85 61-114 (290)
79 4ab5_A Transcriptional regulat 48.3 18 0.00062 27.8 4.2 49 32-84 42-90 (222)
80 3oxn_A Putative transcriptiona 47.6 32 0.0011 27.0 5.6 51 31-85 52-102 (241)
81 3rvy_A ION transport protein; 45.8 10 0.00036 32.0 2.5 59 189-247 178-242 (285)
82 3ho7_A OXYR; beta-alpha-barrel 42.0 26 0.00088 27.1 4.2 49 32-84 45-93 (232)
83 1i6a_A OXYR, hydrogen peroxide 41.3 28 0.00094 27.0 4.2 49 32-84 39-87 (219)
84 3onm_A Transcriptional regulat 41.2 43 0.0015 26.2 5.5 50 31-86 60-109 (238)
85 3jv9_A OXYR, transcriptional r 40.1 24 0.00083 26.9 3.7 49 32-84 38-86 (219)
86 1ixh_A Phosphate-binding prote 39.9 30 0.001 29.7 4.5 49 36-84 38-87 (321)
87 3cvg_A Putative metal binding 36.3 30 0.001 29.1 3.9 55 31-85 58-116 (294)
88 4gd5_A Phosphate ABC transport 34.9 57 0.0019 27.0 5.4 49 37-85 75-123 (279)
89 2hxr_A HTH-type transcriptiona 34.9 42 0.0014 26.1 4.4 49 32-84 64-112 (238)
90 2ql3_A Probable transcriptiona 34.9 50 0.0017 25.0 4.8 49 32-84 39-87 (209)
91 2ozz_A Hypothetical protein YH 32.4 39 0.0013 27.9 3.8 53 32-84 140-199 (231)
92 1pc3_A Phosphate-binding prote 32.1 58 0.002 28.3 5.1 49 36-84 64-114 (350)
93 2fyi_A HTH-type transcriptiona 31.3 71 0.0024 24.7 5.2 50 32-84 48-97 (228)
94 3fzv_A Probable transcriptiona 31.1 75 0.0026 25.8 5.5 50 32-85 129-179 (306)
95 2zzv_A ABC transporter, solute 30.6 29 0.00099 30.3 2.9 39 34-72 78-118 (361)
96 4exl_A PBP 1, phosphate-bindin 29.7 64 0.0022 26.7 4.8 50 36-85 41-92 (265)
97 1uth_A LYSR-type regulatory pr 29.7 88 0.003 25.8 5.8 50 32-85 139-188 (315)
98 2h9b_A HTH-type transcriptiona 28.1 81 0.0028 26.0 5.2 49 32-84 124-172 (312)
99 4ecf_A ABC-type phosphate tran 27.3 73 0.0025 26.3 4.8 50 36-85 41-92 (264)
100 3lr1_A Tungstate ABC transport 27.1 51 0.0017 27.3 3.6 49 37-85 44-95 (236)
101 1ixc_A CBNR, LYSR-type regulat 25.6 75 0.0026 25.6 4.5 49 32-84 125-173 (294)
102 2h98_A HTH-type transcriptiona 23.1 92 0.0031 25.8 4.7 49 32-84 124-172 (313)
103 2esn_A Probable transcriptiona 22.8 1.1E+02 0.0037 24.9 5.0 50 32-85 135-187 (310)
104 3fxq_A LYSR type regulator of 20.8 1.3E+02 0.0044 24.5 5.1 52 32-85 126-177 (305)
105 2yvq_A Carbamoyl-phosphate syn 20.1 77 0.0026 23.8 3.2 38 37-74 86-131 (143)
No 1
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=99.97 E-value=3.1e-33 Score=277.64 Aligned_cols=206 Identities=24% Similarity=0.487 Sum_probs=162.3
Q ss_pred HhhhhcCcEEEEEEecCCceeEe--eCCchhhHHHHHhcCceeEEEeCCCCChhhhhhccccccccccceEEEEEccC-C
Q psy13439 9 ESLKKKRKLLTVYLHSKNEVLSV--ENGKWNGLIADLVNRKTDMALTSLVINSRRESVVDFTVPIMETGIAIVVAKRT-G 85 (261)
Q Consensus 9 e~l~k~~~~~~~~~~~~~~~g~~--~~~~~~gli~~L~~g~~Di~i~~i~it~eR~~~vdfS~py~~~~~~~lv~~~~-~ 85 (261)
+..+++|+.++++..+++.||.. .|++|+|++++|.+|++|++++++++|++|.+.+|||.||+.++..++++++. .
T Consensus 422 ~~a~~l~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~l~~~~~D~~~~~~~~t~~R~~~~dfs~py~~~~~~~~v~~~~~~ 501 (823)
T 3kg2_A 422 EIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKS 501 (823)
T ss_dssp HHHHHHTCCEEEEECSSCCCCCBCTTTCCBCHHHHHHHTTSCSEECSCCBCCHHHHTTEEECSCSEEECEEEEEECCCCC
T ss_pred HHHHHcCCcEEEEEccCCcccccCCCCCchhhHHHhhccccCcEEecceecchhheeeEEeccchhhCCEEEEEECCCcc
Confidence 44567999999999999999985 57899999999999999999999999999999999999999999999999986 3
Q ss_pred CCCcccccCCCCcccccceehhhhHHHHHHHHHHHHhCCCCCcccccccCCCCCCCCCCCCCcchhhhhhhhhhhhcchh
Q psy13439 86 IISPTAFLEPFDTASWMLVGVVAIQASAFTIFFFEWLSPSGFDMKISFSYRPLPFLPPEPFDTASWMLVGVVAIQASAFT 165 (261)
Q Consensus 86 ~~~~~~~l~pF~~~vW~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (261)
..+++.|++||++.+|++++++ ++++++++|+.++++|++|
T Consensus 502 ~~~~~~fl~Pf~~~vW~~i~~~-~~~~~~~l~~~~~~~p~~w-------------------------------------- 542 (823)
T 3kg2_A 502 KPGVFSFLDPLAYEIWMCIVFA-YIGVSVVLFLVSRFSPYEW-------------------------------------- 542 (823)
T ss_dssp CCCGGGTTTTSCHHHHHHHHHH-HHHHHTTGGGTC---------------------------------------------
T ss_pred cccchHhhcCCchhHHHHHHHH-HHHHHHHHHHHHhcChhhc--------------------------------------
Confidence 4678899999999999999874 4556677788888776544
Q ss_pred hhhhhccCCCCCCCcc-cCCCCCCCCcchhhHHHHHHHHHhcccCCCCCCchhhHHHHHHHHHHHHHHHHhhcccceeee
Q psy13439 166 IFFFEWLSPSGFDMKT-TALQPSHRFSLFRTYWLVWAVLFQAAVHIDTPKGFTAKFMTNMWAMFAVVFLAIYTANLAAFM 244 (261)
Q Consensus 166 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~~~l~~qg~~~~~p~s~s~Ril~~~w~l~~lil~~~Yta~L~s~L 244 (261)
++++.+..+. ......+.+++.+++|++++++++||.+. .|++.++|+++++||++++|++++|||+|+|+|
T Consensus 543 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~-~p~~~~~R~~~~~w~~~~lil~~~Yta~L~s~L 615 (823)
T 3kg2_A 543 ------HTEEFEDGRETQSSESTNEFGIFNSLWFSLGAFMQQGADI-SPRSLSGRIVGGVWWFFTLIIISSYTANLAAFL 615 (823)
T ss_dssp ----------------------CHHHHHHHHHHHTTTTSCC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------cCcccccccccccccccccccHHHHHHHHHHHHHhcCCCc-CCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333222110 11223445678899999999999999987 999999999999999999999999999999999
Q ss_pred eccccccccCCccCCC
Q psy13439 245 ITREEFHEFTGVDDVR 260 (261)
Q Consensus 245 t~~~~~~~i~sl~Dl~ 260 (261)
|.++..++|+|++||.
T Consensus 616 t~~~~~~~I~s~~dL~ 631 (823)
T 3kg2_A 616 TVERMVSPIESAEDLS 631 (823)
T ss_dssp HHHHHCCCCCSSHHHH
T ss_pred cccccCCCCCCHHHHh
Confidence 9999999999999973
No 2
>1yae_A Glutamate receptor, ionotropic kainate 2; kainate receptor, membrane protein; HET: NAG FUC DOQ; 3.11A {Rattus norvegicus} SCOP: c.94.1.1
Probab=99.09 E-value=7.9e-11 Score=103.70 Aligned_cols=88 Identities=28% Similarity=0.445 Sum_probs=68.3
Q ss_pred hhhhcCcEEEEEEecCCceeEee--CCchhhHHHHHhcCceeEEEeCCCCChhhhhhccccccccccceEEEEEccC-CC
Q psy13439 10 SLKKKRKLLTVYLHSKNEVLSVE--NGKWNGLIADLVNRKTDMALTSLVINSRRESVVDFTVPIMETGIAIVVAKRT-GI 86 (261)
Q Consensus 10 ~l~k~~~~~~~~~~~~~~~g~~~--~~~~~gli~~L~~g~~Di~i~~i~it~eR~~~vdfS~py~~~~~~~lv~~~~-~~ 86 (261)
..+++|..++++..+++.||... +++|++++++|.+|++|++++++++|++|.+.++||.||+.++..++++++. ..
T Consensus 52 ia~~lg~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~t~eR~~~~~fs~py~~~~~~~~~~~~~~~~ 131 (312)
T 1yae_A 52 LSTILGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAVAPLAITYVREKVIDFSKPFMTLGISILYRKPNGTN 131 (312)
T ss_dssp HHHHHCCEEEEEECSSCCCCCBCTTTCCBCSHHHHHHTTSCSEECSSCBCCHHHHHHEEEEEEEEEECEEEEEEC-----
T ss_pred HHHHcCCeEEEEecCCCccceeccCCCcchHHHHHHhCCCcCEEeecceechhhcceEEecceeeecceEEEEeCCcccc
Confidence 34568999999999999999975 7899999999999999999999999999999999999999999999999875 34
Q ss_pred CCcccccCCCC
Q psy13439 87 ISPTAFLEPFD 97 (261)
Q Consensus 87 ~~~~~~l~pF~ 97 (261)
.+++.++.||+
T Consensus 132 ~~~~~~~~pf~ 142 (312)
T 1yae_A 132 PGVFSFLNGGS 142 (312)
T ss_dssp -----------
T ss_pred ccceeeecccc
Confidence 56777777775
No 3
>2rc8_A Glutamate [NMDA] receptor subunit 3A; membrane protein, cell junction, glycoprotein, ION transport channel, magnesium; 1.45A {Rattus norvegicus} PDB: 2rc7_A 2rc9_A 2rca_A 2rcb_A
Probab=99.07 E-value=1.3e-10 Score=101.67 Aligned_cols=82 Identities=29% Similarity=0.514 Sum_probs=74.1
Q ss_pred hhhhcCcEEEEEEecCCceeEeeCCchhhHHHHHhcCceeEEEeCCCCChhhhhhccccccccccceEEEEEccC-CCCC
Q psy13439 10 SLKKKRKLLTVYLHSKNEVLSVENGKWNGLIADLVNRKTDMALTSLVINSRRESVVDFTVPIMETGIAIVVAKRT-GIIS 88 (261)
Q Consensus 10 ~l~k~~~~~~~~~~~~~~~g~~~~~~~~gli~~L~~g~~Di~i~~i~it~eR~~~vdfS~py~~~~~~~lv~~~~-~~~~ 88 (261)
..+++|+.++++..+++.||.+.+++|++++++|.+|++|++++++++|++|.+.++||.||+..+..++++++. ...+
T Consensus 79 ia~~lg~~~~~~~~~~~~~g~~~~~~w~~~~~~l~~g~~D~~~~~~~~t~eR~~~~~fs~P~~~~~~~i~~~~~~~~i~~ 158 (294)
T 2rc8_A 79 LAEDMNFDFDLYIVGDGKYGAWKNGHWTGLVGDLLSGTANMAVTSFSINTARSQVIDFTSPFFSTSLGILVRTRGTELSG 158 (294)
T ss_dssp HHHHHTEEEEEEECTTCCCCCEETTEECHHHHHHHHTSCSEECSSCBCCHHHHTTSEECSCSEEEEEEEEEETTSCCCCS
T ss_pred HHHHcCCcEEEEECCCCcccccCCCCHHHHHHHHHCCCcCEEEeccccCHhHhceEEEccchHhcceEEEEECCCCCcCC
Confidence 344689999999999999999999999999999999999999999999999999999999999999999999875 4455
Q ss_pred ccc
Q psy13439 89 PTA 91 (261)
Q Consensus 89 ~~~ 91 (261)
+.+
T Consensus 159 ~~d 161 (294)
T 2rc8_A 159 IHD 161 (294)
T ss_dssp TTC
T ss_pred hhh
Confidence 544
No 4
>2a5s_A N-methyl-D-aspartate receptor nmdar2A subunit, NMDA receptor nmdar2A; protein-ligand complex, metal transport,membrane protein; HET: GLU; 1.70A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 2a5t_B* 3oen_A* 3oel_A* 3oem_A* 3oek_A*
Probab=99.04 E-value=2.2e-10 Score=99.65 Aligned_cols=80 Identities=34% Similarity=0.563 Sum_probs=73.4
Q ss_pred hhhhcCcEEEEEEecCCceeEeeCCchhhHHHHHhcCceeEEEeCCCCChhhhhhccccccccccceEEEEEccCCCCCc
Q psy13439 10 SLKKKRKLLTVYLHSKNEVLSVENGKWNGLIADLVNRKTDMALTSLVINSRRESVVDFTVPIMETGIAIVVAKRTGIISP 89 (261)
Q Consensus 10 ~l~k~~~~~~~~~~~~~~~g~~~~~~~~gli~~L~~g~~Di~i~~i~it~eR~~~vdfS~py~~~~~~~lv~~~~~~~~~ 89 (261)
..+++|+.|+++..+++.||...+++|++++++|.+|++|++++++++|++|.+.++||.||+.++..++++++....++
T Consensus 68 i~~~lg~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~g~~D~~~~~~~~t~~R~~~~~fs~p~~~~~~~~~~~~~~~~~~~ 147 (284)
T 2a5s_A 68 LSRTVKFTYDLYLVTNGKHGKKVNNVWNGMIGEVVYQRAVMAVGSLTINEERSEVVDFSVPFVETGISVMVSRGTQVTGL 147 (284)
T ss_dssp HHHHHTCCEEEEECCSSSSCCEETTEECHHHHHHHTTSCSEECSSCBCCHHHHTTEEECCCCEEECEEEEEETTCCCCST
T ss_pred HHHHCCCCEEEEEccCCccCcccCCCHHHHHHHHhcCCcCEEEEEEEEeccccceEEeccCchhcCEEEEEECCcccccc
Confidence 34568999999999999999988999999999999999999999999999999999999999999999999988765444
No 5
>1pb7_A N-methyl-D-aspartate receptor subunit 1; ligand binding receptor, NR1, ligand binding protein; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1pbq_A* 1y1m_A 1y1z_A 1y20_A 2a5t_A* 1pb8_A 1pb9_A
Probab=99.01 E-value=3e-10 Score=99.43 Aligned_cols=82 Identities=26% Similarity=0.438 Sum_probs=72.7
Q ss_pred hhhhcCcEEEEEEecCCceeEe--eC----CchhhHHHHHhcCceeEEEeCCCCChhhhhhccccccccccceEEEEEcc
Q psy13439 10 SLKKKRKLLTVYLHSKNEVLSV--EN----GKWNGLIADLVNRKTDMALTSLVINSRRESVVDFTVPIMETGIAIVVAKR 83 (261)
Q Consensus 10 ~l~k~~~~~~~~~~~~~~~g~~--~~----~~~~gli~~L~~g~~Di~i~~i~it~eR~~~vdfS~py~~~~~~~lv~~~ 83 (261)
..+++|+.|+++..+++.||.. .| ++|++++++|.+|++|++++++++|++|.+.++||.||+..+..++++++
T Consensus 74 ia~~lg~~~~~~~~~d~~~g~~~~~~~~~~~~w~~~~~~l~~g~~D~~~~~~~~t~~R~~~~~fs~Py~~~~~~i~~~~~ 153 (292)
T 1pb7_A 74 LARTMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGELLSGQADMIVAPLTINNERAQYIEFSKPFKYQGLTILVKKG 153 (292)
T ss_dssp HHHHHTCCEEEEECTTCCCCCEEECTTSSCEEECHHHHHHHHTSCSEECSSCBCCHHHHTTEEECSCSEEEEEEEEEETT
T ss_pred HHHHcCceEEEEEecCCcccccccccccccCcHHHHHHHHHcCCcCEEEeeeEecHHHhcceEechhhHhcCeEEEEECC
Confidence 3446899999999999999986 34 58999999999999999999999999999999999999999999999998
Q ss_pred CCCCCccc
Q psy13439 84 TGIISPTA 91 (261)
Q Consensus 84 ~~~~~~~~ 91 (261)
....++.+
T Consensus 154 ~~i~~~~d 161 (292)
T 1pb7_A 154 TRITGIND 161 (292)
T ss_dssp CCCCSTTC
T ss_pred cCCCCCcC
Confidence 76655444
No 6
>3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell junction, cell membrane, glycoprotein, ION transport, ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A* 3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2xxr_A* 2xxt_A* 2xxx_A* 2xxw_A* 2xxy_A* 2xxu_A* 2xxv_A* 3qxm_A* 2i0c_A* ...
Probab=98.94 E-value=7.2e-10 Score=94.13 Aligned_cols=84 Identities=32% Similarity=0.523 Sum_probs=75.1
Q ss_pred HhhhhcCcEEEEEEecCCceeEee--CCchhhHHHHHhcCceeEEEeCCCCChhhhhhccccccccccceEEEEEccCCC
Q psy13439 9 ESLKKKRKLLTVYLHSKNEVLSVE--NGKWNGLIADLVNRKTDMALTSLVINSRRESVVDFTVPIMETGIAIVVAKRTGI 86 (261)
Q Consensus 9 e~l~k~~~~~~~~~~~~~~~g~~~--~~~~~gli~~L~~g~~Di~i~~i~it~eR~~~vdfS~py~~~~~~~lv~~~~~~ 86 (261)
+..+++|..++++..+++.+|... +++|++++.+|.+|++|++++++++|++|.+.++||.||+..+..++++++...
T Consensus 42 ~ia~~lg~~~~~~~~p~~~~g~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~t~eR~~~~~fs~py~~~~~~~~~~~~~~i 121 (259)
T 3g3k_A 42 ELSTHLGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAVAPLAITYVREEVIDFSKPFMTLGISILYRKGTPI 121 (259)
T ss_dssp HHHHHHTCCEEEEECTTCCCCCBCTTTCCBCHHHHHHHTTSCSEECSSCBCCHHHHTTEEECSCSEEECEEEEEESSSSC
T ss_pred HHHHHcCCeEEEEECCCCCcCcccCCCCcchHHHHHHhcCcccEEEeeeEecccccceEeeeeeeeeCCEEEEEeCCccc
Confidence 445578999999999999999864 789999999999999999999999999999999999999999999999998776
Q ss_pred CCcccc
Q psy13439 87 ISPTAF 92 (261)
Q Consensus 87 ~~~~~~ 92 (261)
.++.++
T Consensus 122 ~~~~dL 127 (259)
T 3g3k_A 122 DSADDL 127 (259)
T ss_dssp CSHHHH
T ss_pred cCHHHh
Confidence 666553
No 7
>2v3u_A Glutamate receptor delta-2 subunit; postsynaptic membrane, ionotropic glutamate receptors, transmembrane, membrane protein; 1.74A {Rattus norvegicus} PDB: 2v3t_A
Probab=98.85 E-value=2.9e-09 Score=90.26 Aligned_cols=83 Identities=29% Similarity=0.509 Sum_probs=74.0
Q ss_pred hhhhcCcEEEEEEecCCceeEe-eCCchhhHHHHHhcCceeEEEeCCCCChhhhhhccccccccccceEEEEEccCCCCC
Q psy13439 10 SLKKKRKLLTVYLHSKNEVLSV-ENGKWNGLIADLVNRKTDMALTSLVINSRRESVVDFTVPIMETGIAIVVAKRTGIIS 88 (261)
Q Consensus 10 ~l~k~~~~~~~~~~~~~~~g~~-~~~~~~gli~~L~~g~~Di~i~~i~it~eR~~~vdfS~py~~~~~~~lv~~~~~~~~ 88 (261)
..+++|..++++..+++.||.. .+++|++++.+|.+|++|++++++++|++|.+.++||.||+..+..++++++....+
T Consensus 40 i~~~lg~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~g~~D~~~~~~~~t~~R~~~~~fs~p~~~~~~~~~~~~~~~i~~ 119 (265)
T 2v3u_A 40 LSNYLGFNYEIYVAPDHKYGSPQEDGTWNGLVGELVFKRADIGISALTITPDRENVVDFTTRYMDYSVGVLLRRGTSIQS 119 (265)
T ss_dssp HHHHHTCEEEEEECTTCCCCCBCTTSCBCHHHHHHHTTSCSEECSSCBCCHHHHTTEEECSCSEEECEEEEEETTCCCCS
T ss_pred HHHHcCCcEEEEEccCCcccccCCCCCcchHHHHHHcCCcCeEEeeeEeehhhhccccccceeeeccEEEEEECCCCccc
Confidence 3456899999999999889886 578999999999999999999999999999999999999999999999999876666
Q ss_pred cccc
Q psy13439 89 PTAF 92 (261)
Q Consensus 89 ~~~~ 92 (261)
+.++
T Consensus 120 ~~dL 123 (265)
T 2v3u_A 120 LQDL 123 (265)
T ss_dssp HHHH
T ss_pred hhhh
Confidence 5554
No 8
>1mqi_A Glutamate receptor 2; GLUR2, ligand binding core, S1S2, partial agonist, WILLARDIINES, fluoro-WILLARDIINE, membrane protein; HET: FWD; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1ftj_A* 1ftl_A* 1fto_A 1fw0_A* 1m5b_A* 1ftm_A* 1m5c_A* 1mm6_A* 1mm7_A* 1mqg_A* 1m5e_A* 1mqj_A* 1ms7_A* 1mxu_A* 1mxv_A 1mxw_A 1mxx_A 1mxy_A 1mxz_A 1my0_A ...
Probab=98.78 E-value=5.5e-09 Score=88.82 Aligned_cols=82 Identities=30% Similarity=0.459 Sum_probs=71.7
Q ss_pred hhhhcCcEEEEEEecCCceeEe-eCC-chhhHHHHHhcCceeEEEeCCCCChhhhhhccccccccccceEEEEEccCCCC
Q psy13439 10 SLKKKRKLLTVYLHSKNEVLSV-ENG-KWNGLIADLVNRKTDMALTSLVINSRRESVVDFTVPIMETGIAIVVAKRTGII 87 (261)
Q Consensus 10 ~l~k~~~~~~~~~~~~~~~g~~-~~~-~~~gli~~L~~g~~Di~i~~i~it~eR~~~vdfS~py~~~~~~~lv~~~~~~~ 87 (261)
..+++|..++++..+++.||.. .++ +|++++.+|.+|++|++++++++|++|.+.++||.||+..+..++++++....
T Consensus 43 ia~~lg~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~t~~R~~~~~fs~p~~~~~~~~~~~~~~~i~ 122 (263)
T 1mqi_A 43 IAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGTPIE 122 (263)
T ss_dssp HHHHHTCCEEEEECTTCCCCCBCTTTCCBCHHHHHHHTTSCSEECSSCBCCHHHHTTEEECSCSEEECEEEEEETTCSCC
T ss_pred HHHHcCceEEEEEccccccCccCCCCCCcHHHHHHHHcCCcCEEEEeeEecHHHHhhcccccceecccEEEEEcCccccC
Confidence 3456888899999988899986 333 89999999999999999999999999999999999999999999999987665
Q ss_pred Cccc
Q psy13439 88 SPTA 91 (261)
Q Consensus 88 ~~~~ 91 (261)
++.+
T Consensus 123 ~~~d 126 (263)
T 1mqi_A 123 SAED 126 (263)
T ss_dssp SHHH
T ss_pred CHHH
Confidence 5544
No 9
>4h5g_A Amino acid ABC superfamily ATP binding cassette transporter, binding protein; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: ARG; 1.78A {Streptococcus pneumoniae} PDB: 4h5f_A*
Probab=98.28 E-value=9.4e-07 Score=74.42 Aligned_cols=83 Identities=19% Similarity=0.325 Sum_probs=63.5
Q ss_pred eeCCchhhHHHHHhcCceeEEEeCCCCChhhhhhccccccccccceEEEEEccCC--CCCcccccCCCCcccccceehhh
Q psy13439 31 VENGKWNGLIADLVNRKTDMALTSLVINSRRESVVDFTVPIMETGIAIVVAKRTG--IISPTAFLEPFDTASWMLVGVVA 108 (261)
Q Consensus 31 ~~~~~~~gli~~L~~g~~Di~i~~i~it~eR~~~vdfS~py~~~~~~~lv~~~~~--~~~~~~~l~pF~~~vW~~i~~~~ 108 (261)
+...+|+.++.+|.+|++|++++++++|+||.+.++||.||+..+..+++++.+. ..++.+ +.+ ..+++
T Consensus 58 ~~~~~~~~~~~~l~~g~~d~~~~~~~~t~eR~~~~~fs~py~~~~~~~~v~~~~~~~~~~~~d----l~g---~~i~v-- 128 (243)
T 4h5g_A 58 ILSMSFDNVLTSLQTGKADLAVAGISATDERKEVFDFSIPYYENKISFLVHKADVEKYKDLTS----LES---ANIAA-- 128 (243)
T ss_dssp EEECCGGGHHHHHHTTSCSEECSSCBCCHHHHTTEEECSCSBCCCEEEEEEGGGTTTCCSHHH----HHT---SEEEE--
T ss_pred EecccHHHHHHHHHcCCCCcccccccCChhHccEEEccCccccCccccccccccccccccccc----CCC---CEEEe--
Confidence 4677899999999999999999999999999999999999999999999988753 233333 233 34444
Q ss_pred hHHHHHHHHHHHHh
Q psy13439 109 IQASAFTIFFFEWL 122 (261)
Q Consensus 109 l~~~~~~~~l~~~~ 122 (261)
..++....++.+..
T Consensus 129 ~~g~~~~~~l~~~~ 142 (243)
T 4h5g_A 129 QKGTVPESMVKEQL 142 (243)
T ss_dssp ETTSHHHHHHHHHC
T ss_pred cCCcHHHHHHHHhc
Confidence 44555555565554
No 10
>4gvo_A LMO2349 protein; structural genomics, IDP05245, L-cystine, ABC transporter, periplasmic binding protein, niaid; HET: HIS; 1.45A {Listeria monocytogenes} PDB: 2o1m_A
Probab=98.18 E-value=2e-06 Score=72.33 Aligned_cols=61 Identities=15% Similarity=0.105 Sum_probs=48.2
Q ss_pred eeCCchhhHHHHHhcCceeEEEeCCCCChhhhhhccccccccccceEEEEEc-cC-CCCCccc
Q psy13439 31 VENGKWNGLIADLVNRKTDMALTSLVINSRRESVVDFTVPIMETGIAIVVAK-RT-GIISPTA 91 (261)
Q Consensus 31 ~~~~~~~gli~~L~~g~~Di~i~~i~it~eR~~~vdfS~py~~~~~~~lv~~-~~-~~~~~~~ 91 (261)
+...+|++++.+|.+|++|+++++++.|+||.+.++||.||+.....+++.+ .. ...++.+
T Consensus 53 ~~~~~~~~~~~~l~~g~~D~~~~~~~~t~eR~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~~d 115 (243)
T 4gvo_A 53 FKTMDFSNLLVSLGAGKVDIVAHQMEKSKEREKKFLFNDVAYNNFPLQLTVLDSNNSINSTKD 115 (243)
T ss_dssp EEECCGGGHHHHHHTTSCSEECSCCBCCHHHHHHSEECSSCCEECCEEEEEETTCCSCSSGGG
T ss_pred EEECCHHHHHHHHHCCCCCEecccCCCCHHHhhhhhhhhhhcccccceEEEeccccccCchHH
Confidence 3456799999999999999999999999999999999999887665555544 33 3444444
No 11
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0
Probab=98.06 E-value=5.9e-06 Score=68.59 Aligned_cols=58 Identities=22% Similarity=0.390 Sum_probs=52.7
Q ss_pred CchhhHHHHHhcCceeEEEeCCCCChhhhhhccccccccccceEEEEEccCCCCCccc
Q psy13439 34 GKWNGLIADLVNRKTDMALTSLVINSRRESVVDFTVPIMETGIAIVVAKRTGIISPTA 91 (261)
Q Consensus 34 ~~~~gli~~L~~g~~Di~i~~i~it~eR~~~vdfS~py~~~~~~~lv~~~~~~~~~~~ 91 (261)
.+|+.++.+|.+|++|+++++++.|++|.+.++||.||+..+..++++++....++.+
T Consensus 50 ~~~~~~~~~l~~g~~D~~~~~~~~~~~r~~~~~fs~p~~~~~~~~~~~~~~~~~~~~d 107 (237)
T 3kzg_A 50 YIFDDLFPALKNREVDLVIASMIITDERKKHFIFSLPYMESNSQYITTVDSKISTFDD 107 (237)
T ss_dssp ECGGGHHHHHHTTSSSEECSSCBCCTTGGGTCEECCCSBCCEEEEEEETTCSCCSGGG
T ss_pred cCHHHHHHHHhCCCCCEEEEccccChhHhccceeeeeeeecceEEEEECCCCCCCHHH
Confidence 3589999999999999999999999999999999999999999999999877655555
No 12
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0
Probab=97.98 E-value=7.6e-06 Score=68.07 Aligned_cols=53 Identities=25% Similarity=0.477 Sum_probs=49.3
Q ss_pred eCCchhhHHHHHhcCceeEEEeCCCCChhhhhhccccccccccceEEEEEccC
Q psy13439 32 ENGKWNGLIADLVNRKTDMALTSLVINSRRESVVDFTVPIMETGIAIVVAKRT 84 (261)
Q Consensus 32 ~~~~~~gli~~L~~g~~Di~i~~i~it~eR~~~vdfS~py~~~~~~~lv~~~~ 84 (261)
...+|+.++.+|.+|++|+++++++.|++|.+.++||.||+..+..++++++.
T Consensus 49 ~~~~~~~~~~~l~~g~~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~ 101 (232)
T 3i6v_A 49 VKNDWDSIIPNLVSGNYDTIIAGMSITDERDEVIDFTQNYIPPTASSYVATSD 101 (232)
T ss_dssp EECCGGGHHHHHHTTSCSEECSSCBCCHHHHTTSEEEEEEECCCEEEEEESST
T ss_pred EECCHHHHHHHHHCCCCCEEEeCCcCCHHHHhhcCcccccccCCeEEEEECCC
Confidence 34579999999999999999999999999999999999999999999998875
No 13
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=97.96 E-value=9.7e-06 Score=67.05 Aligned_cols=81 Identities=22% Similarity=0.349 Sum_probs=62.4
Q ss_pred CCchhhHHHHHhcCceeEEEeCCCCChhhhhhccccccccccceEEEEEccCCCC-CcccccCCCCcccccceehhhhHH
Q psy13439 33 NGKWNGLIADLVNRKTDMALTSLVINSRRESVVDFTVPIMETGIAIVVAKRTGII-SPTAFLEPFDTASWMLVGVVAIQA 111 (261)
Q Consensus 33 ~~~~~gli~~L~~g~~Di~i~~i~it~eR~~~vdfS~py~~~~~~~lv~~~~~~~-~~~~~l~pF~~~vW~~i~~~~l~~ 111 (261)
..+|+.++.+|.+|++|+++++++.|++|.+.++||.||+.....++++++.... ++.+ +.+ ..+++ ..+
T Consensus 49 ~~~~~~~~~~l~~g~~D~~~~~~~~t~~r~~~~~~s~p~~~~~~~l~~~~~~~~~~~~~d----L~g---~~v~~--~~g 119 (239)
T 1lst_A 49 ASDFDALIPSLKAKKIDAIISSLSITDKRQQEIAFSDKLYAADSRLIAAKGSPIQPTLES----LKG---KHVGV--LQG 119 (239)
T ss_dssp ECCGGGHHHHHHTTSCSEECSSCBCCHHHHHHCEECSCSBCCCEEEEEETTCCCCSSHHH----HTT---CEEEE--ETT
T ss_pred eCCHHHHHHHHhCCCCCEEEECcCcCHHHhhceeecccceeCceEEEEeCCCCCCCCHHH----hCC---CEEEE--EcC
Confidence 3479999999999999999999999999999999999999999999999887554 4444 334 34444 345
Q ss_pred HHHHHHHHHHh
Q psy13439 112 SAFTIFFFEWL 122 (261)
Q Consensus 112 ~~~~~~l~~~~ 122 (261)
+....++.+.+
T Consensus 120 ~~~~~~l~~~~ 130 (239)
T 1lst_A 120 STQEAYANDNW 130 (239)
T ss_dssp SHHHHHHHHHT
T ss_pred ccHHHHHHHhc
Confidence 55555555444
No 14
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0
Probab=97.95 E-value=2e-05 Score=64.24 Aligned_cols=81 Identities=25% Similarity=0.457 Sum_probs=62.8
Q ss_pred CCchhhHHHHHhcCceeEEEeCCCCChhhhhhccccccccccceEEEEEccCCC-CCcccccCCCCcccccceehhhhHH
Q psy13439 33 NGKWNGLIADLVNRKTDMALTSLVINSRRESVVDFTVPIMETGIAIVVAKRTGI-ISPTAFLEPFDTASWMLVGVVAIQA 111 (261)
Q Consensus 33 ~~~~~gli~~L~~g~~Di~i~~i~it~eR~~~vdfS~py~~~~~~~lv~~~~~~-~~~~~~l~pF~~~vW~~i~~~~l~~ 111 (261)
..+|..++.+|.+|++|+++++++.+++|.+.+.||.||+..+..++++++... .++.+ +.+ ..+++ ..+
T Consensus 47 ~~~~~~~~~~l~~g~~D~~~~~~~~~~~r~~~~~~s~p~~~~~~~l~~~~~~~~~~~~~d----L~g---~~v~~--~~g 117 (227)
T 3tql_A 47 NQPWDSLIPSLKLGKFDALFGGMNITTARQKEVDFTDPYYTNSVSFIADKNTPLTLSKQG----LKG---KIIGV--QGG 117 (227)
T ss_dssp ECCHHHHHHHHHHTSCSEECSSCBCCTTGGGTEEECSCSBCCEEEEEEETTSCCCCSTTT----TTT---CEEEE--ETT
T ss_pred eCCHHHHHHHHhCCCCCEEEecCcCCHhHHhheecccceeccceEEEEeCCCCCCCCHHH----hCC---CEEEE--Eec
Confidence 346999999999999999999999999999999999999999999999988755 44444 445 34444 334
Q ss_pred HHHHHHHHHHh
Q psy13439 112 SAFTIFFFEWL 122 (261)
Q Consensus 112 ~~~~~~l~~~~ 122 (261)
+....++.+..
T Consensus 118 ~~~~~~l~~~~ 128 (227)
T 3tql_A 118 TTFDSYLQDSF 128 (227)
T ss_dssp SHHHHHHHHHH
T ss_pred ccHHHHHHHhc
Confidence 44555555544
No 15
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae}
Probab=97.94 E-value=1.4e-05 Score=66.28 Aligned_cols=80 Identities=24% Similarity=0.322 Sum_probs=61.9
Q ss_pred eCCchhhHHHHHhcCceeEEEeCCCCChhhhhhccccccccccceEEEEEc-cCCCCCcccccCCCCcccccceehhhhH
Q psy13439 32 ENGKWNGLIADLVNRKTDMALTSLVINSRRESVVDFTVPIMETGIAIVVAK-RTGIISPTAFLEPFDTASWMLVGVVAIQ 110 (261)
Q Consensus 32 ~~~~~~gli~~L~~g~~Di~i~~i~it~eR~~~vdfS~py~~~~~~~lv~~-~~~~~~~~~~l~pF~~~vW~~i~~~~l~ 110 (261)
...+|+.++.+|.+|++|+++++++.+++|.+.+.||.||+..+..+++++ .....++.+ +.+ ..+++ ..
T Consensus 52 ~~~~~~~~~~~l~~g~~D~~~~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~~~i~~~~d----L~g---~~i~~--~~ 122 (246)
T 4eq9_A 52 EKTEWSGVFAGLDADRYNMAVNNLSYTKERAEKYLYAAPIAQNPNVLVVKKDDSSIKSLDD----IGG---KSTEV--VQ 122 (246)
T ss_dssp EECCHHHHHHHHHTTSCSEECSSCCCCHHHHHHEEECCCCEECCEEEEEETTCCSCSSGGG----CTT---CEEEE--CT
T ss_pred EeCCHHHHHHHHhCCCcCEEecccccChhhhhceeeccceecCceEEEEECCCCCCCCHHH----hCC---CEEEE--ec
Confidence 344799999999999999999999999999999999999999999999998 555555554 344 34444 33
Q ss_pred HHHHHHHHHH
Q psy13439 111 ASAFTIFFFE 120 (261)
Q Consensus 111 ~~~~~~~l~~ 120 (261)
++....++..
T Consensus 123 g~~~~~~l~~ 132 (246)
T 4eq9_A 123 ATTSAKQLEA 132 (246)
T ss_dssp TCHHHHHHHH
T ss_pred CccHHHHHHH
Confidence 4444444444
No 16
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0
Probab=97.93 E-value=1.5e-05 Score=66.51 Aligned_cols=82 Identities=23% Similarity=0.385 Sum_probs=62.0
Q ss_pred CchhhHHHHHhcCceeEEEeCCCCChhhhhhccccccccccceEEEEEcc--CCCCCcccccCCCCcccccceehhhhHH
Q psy13439 34 GKWNGLIADLVNRKTDMALTSLVINSRRESVVDFTVPIMETGIAIVVAKR--TGIISPTAFLEPFDTASWMLVGVVAIQA 111 (261)
Q Consensus 34 ~~~~gli~~L~~g~~Di~i~~i~it~eR~~~vdfS~py~~~~~~~lv~~~--~~~~~~~~~l~pF~~~vW~~i~~~~l~~ 111 (261)
.+|..++.+|.+|++|+++++++.|++|.+.+.||.||+..+..++++++ ....++.++-.+ + ..+++ ..+
T Consensus 51 ~~~~~~~~~l~~g~~D~~~~~~~~t~~r~~~~~~s~p~~~~~~~~~~~~~~~~~i~~~~dL~~~--g---~~i~v--~~g 123 (245)
T 3k4u_A 51 TSWDGLIPGLVTEKFDIIISGMTISQERNLRVNFVEPYIVVGQSLLVKKGLEKGVKSYKDLDKP--E---LTLVT--KFG 123 (245)
T ss_dssp CCGGGHHHHHHTTSCSEECSSCBCCHHHHTTSEECSCSEEECEEEEEETTTTTTCCSGGGGCCS--S---CEEEE--ETT
T ss_pred ccHHHHHHHHhCCCcCEEEecCcCCHHHHhhcCcchhhheeceEEEEECCcccccCCHHHhccC--C---cEEEE--eCC
Confidence 36999999999999999999999999999999999999999999999988 445555553221 3 33444 345
Q ss_pred HHHHHHHHHHh
Q psy13439 112 SAFTIFFFEWL 122 (261)
Q Consensus 112 ~~~~~~l~~~~ 122 (261)
+....++.+..
T Consensus 124 ~~~~~~l~~~~ 134 (245)
T 3k4u_A 124 VSAEYAAKRLF 134 (245)
T ss_dssp SHHHHHHHHHC
T ss_pred cHHHHHHHhhC
Confidence 55555555443
No 17
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311}
Probab=97.93 E-value=1.2e-05 Score=68.08 Aligned_cols=80 Identities=23% Similarity=0.264 Sum_probs=62.8
Q ss_pred eeCCchhhHHHHHhcCceeEEEeCCCCChhhhhhccccccccccceEEEEEccCCCCCcccccCCCCcccccceehhhhH
Q psy13439 31 VENGKWNGLIADLVNRKTDMALTSLVINSRRESVVDFTVPIMETGIAIVVAKRTGIISPTAFLEPFDTASWMLVGVVAIQ 110 (261)
Q Consensus 31 ~~~~~~~gli~~L~~g~~Di~i~~i~it~eR~~~vdfS~py~~~~~~~lv~~~~~~~~~~~~l~pF~~~vW~~i~~~~l~ 110 (261)
+...+|..++.+|.+|++|+++++++.|++|.+.++||.||+.....++++++....++.++ .+ ..+++ ..
T Consensus 64 ~~~~~~~~~~~~l~~g~~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~~i~~~~dL----~g---~~i~v--~~ 134 (268)
T 3hv1_A 64 WQAIDWDMKETELKNGTIDLIWNGYSVTDERKQSADFTEPYMVNEQVLVTKKSSGIDSVAGM----AG---KTLGA--QA 134 (268)
T ss_dssp EEECCGGGHHHHHHHTSCSEECSSCBCCHHHHTTCEECCCCEEECEEEEEEGGGCCCSSGGG----TT---CCEEE--ET
T ss_pred EEECCHHHHHHHHHCCCCCEEEecCccCHHHHhcCcCcHHHeeCceEEEEECCCCCCCHHHh----CC---CEEEE--Ee
Confidence 34457999999999999999999999999999999999999999999999998766665553 34 34444 33
Q ss_pred HHHHHHHHH
Q psy13439 111 ASAFTIFFF 119 (261)
Q Consensus 111 ~~~~~~~l~ 119 (261)
++....++.
T Consensus 135 g~~~~~~l~ 143 (268)
T 3hv1_A 135 GSSGYDAFN 143 (268)
T ss_dssp TCHHHHHHH
T ss_pred CCchHHHHH
Confidence 444444444
No 18
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa}
Probab=97.90 E-value=8e-06 Score=67.65 Aligned_cols=85 Identities=19% Similarity=0.285 Sum_probs=63.1
Q ss_pred eeCCchhhHHHHHhcCceeEEEeCCCCChhhhhhccccccccccceEEEEEccC--CCCCcccccCCCCcccccceehhh
Q psy13439 31 VENGKWNGLIADLVNRKTDMALTSLVINSRRESVVDFTVPIMETGIAIVVAKRT--GIISPTAFLEPFDTASWMLVGVVA 108 (261)
Q Consensus 31 ~~~~~~~gli~~L~~g~~Di~i~~i~it~eR~~~vdfS~py~~~~~~~lv~~~~--~~~~~~~~l~pF~~~vW~~i~~~~ 108 (261)
+...+|+.++.+|.+|++|+++++++.|++|.+.++||.||+..+..+++++++ ...++.++-.+ + ..+++
T Consensus 58 ~~~~~~~~~~~~l~~g~~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~~~~i~~~~dL~~~--g---~~v~~-- 130 (239)
T 3kbr_A 58 VVPTSWPNLMRDFADDRFDIAMSGISINLERQRQAYFSIPYLRDGKTPITLCSEEARFQTLEQIDQP--G---VTAIV-- 130 (239)
T ss_dssp EEECCTTTHHHHHHTTCCSEECSSCBCCHHHHTTCEECSCSEEECEEEEEEGGGGGGGSSHHHHSST--T---CEEEE--
T ss_pred EEEeCHHHHHHHHHCCCcCEEEeCCcCCHHHcCccccchHHhccCcEEEEECCcccccCCHHHhcCC--C---cEEEE--
Confidence 344579999999999999999999999999999999999999999999999875 44555553210 2 33443
Q ss_pred hHHHHHHHHHHHHh
Q psy13439 109 IQASAFTIFFFEWL 122 (261)
Q Consensus 109 l~~~~~~~~l~~~~ 122 (261)
..++....++.+..
T Consensus 131 ~~g~~~~~~l~~~~ 144 (239)
T 3kbr_A 131 NPGGTNEKFARANL 144 (239)
T ss_dssp CTTSHHHHHHHHHC
T ss_pred cCCCcHHHHHHHhC
Confidence 33555555555443
No 19
>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis}
Probab=97.80 E-value=1.7e-05 Score=67.59 Aligned_cols=78 Identities=14% Similarity=0.189 Sum_probs=60.5
Q ss_pred eCCchhhHHHHHhcCceeEEEeCCCCChhhhhhccccccccccceEEEEEccC--CCCCcccccCCCCcccccceehhhh
Q psy13439 32 ENGKWNGLIADLVNRKTDMALTSLVINSRRESVVDFTVPIMETGIAIVVAKRT--GIISPTAFLEPFDTASWMLVGVVAI 109 (261)
Q Consensus 32 ~~~~~~gli~~L~~g~~Di~i~~i~it~eR~~~vdfS~py~~~~~~~lv~~~~--~~~~~~~~l~pF~~~vW~~i~~~~l 109 (261)
...+|+.++.+|.+|++|+++++++.|++|.+.++||.||+.....++++++. ...++.+ +.+ ..+++ .
T Consensus 68 ~~~~~~~~~~~l~~G~~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~l~~~~~~~~~i~~~~d----L~g---~~i~v--~ 138 (271)
T 2iee_A 68 KEMGIDGMLTAVNSGQVDAAANDIDVTKDREEKFAFSTPYKYSYGTAIVRKDDLSGIKTLKD----LKG---KKAAG--A 138 (271)
T ss_dssp EECCSTTHHHHHHHTSSSEECSSCBCCHHHHTTEEECCCSEEEEEEEEECTTTGGGCSSGGG----GTT---CEEES--C
T ss_pred EECCHHHHHHHHHCCCcCEEEeCCcCChhhccceEEeecceeCCeEEEEECCCCCCCCCHHH----hCC---CEEEE--e
Confidence 44579999999999999999999999999999999999999999999999876 3555544 344 34544 3
Q ss_pred HHHHHHHHH
Q psy13439 110 QASAFTIFF 118 (261)
Q Consensus 110 ~~~~~~~~l 118 (261)
.++....++
T Consensus 139 ~g~~~~~~l 147 (271)
T 2iee_A 139 ATTVYMEVA 147 (271)
T ss_dssp TTSHHHHHH
T ss_pred CCccHHHHH
Confidence 344444444
No 20
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A
Probab=97.80 E-value=1.9e-05 Score=66.72 Aligned_cols=82 Identities=17% Similarity=0.383 Sum_probs=62.8
Q ss_pred eCCchhhHHHHHhcCceeEEEeCCCCChhhhhhccccccccccceEEEEEccC--CCCCcccccCCCCcccccceehhhh
Q psy13439 32 ENGKWNGLIADLVNRKTDMALTSLVINSRRESVVDFTVPIMETGIAIVVAKRT--GIISPTAFLEPFDTASWMLVGVVAI 109 (261)
Q Consensus 32 ~~~~~~gli~~L~~g~~Di~i~~i~it~eR~~~vdfS~py~~~~~~~lv~~~~--~~~~~~~~l~pF~~~vW~~i~~~~l 109 (261)
...+|+.++.+|.+|++|+++++++.|++|.+.++||.||+..+..+++++++ ...++.+ +.+ ..+++ .
T Consensus 73 ~~~~~~~~~~~l~~g~~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~~~~i~~~~d----L~g---~~v~v--~ 143 (259)
T 4dz1_A 73 TEYAWDGMLGAVASGQADVAFSGISITDKRKKVIDFSEPYYINSFYLVSMANHKITLNNLNE----LNK---YSIGY--P 143 (259)
T ss_dssp EECCHHHHHHHHHHTSSSEEEEEEECCHHHHTTEEECCCSEEEEEEEEEETTSCCCCCSGGG----GGG---SCEEE--E
T ss_pred EEcCHHHHHHHHhCCCCCEEEECCcCCHHHhhccccccchhhCceEEEEEcCCCCCCCCHHH----hCC---CEEEE--e
Confidence 44589999999999999999999999999999999999999999999998764 3445444 344 34544 3
Q ss_pred HHHHHHHHHHHHh
Q psy13439 110 QASAFTIFFFEWL 122 (261)
Q Consensus 110 ~~~~~~~~l~~~~ 122 (261)
.++....++.+..
T Consensus 144 ~g~~~~~~l~~~~ 156 (259)
T 4dz1_A 144 RGMAYSDLIKNDL 156 (259)
T ss_dssp TTSTHHHHHHHHT
T ss_pred CCcHHHHHHHHhc
Confidence 3454555555544
No 21
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A
Probab=97.76 E-value=2.7e-05 Score=63.43 Aligned_cols=80 Identities=20% Similarity=0.353 Sum_probs=61.3
Q ss_pred CCchhhHHHHHhcCceeEEEeCCCCChhhhhhccccccccccceEEEEEccCC-CCCcccccCCCCcccccceehhhhHH
Q psy13439 33 NGKWNGLIADLVNRKTDMALTSLVINSRRESVVDFTVPIMETGIAIVVAKRTG-IISPTAFLEPFDTASWMLVGVVAIQA 111 (261)
Q Consensus 33 ~~~~~gli~~L~~g~~Di~i~~i~it~eR~~~vdfS~py~~~~~~~lv~~~~~-~~~~~~~l~pF~~~vW~~i~~~~l~~ 111 (261)
..+|..++.+|.+|++|+++++++.+++|.+.++|+.||+.....++++++.. ..++.+ +.+ ..+++ ..+
T Consensus 47 ~~~~~~~~~~l~~g~~D~~~~~~~~~~~r~~~~~~~~p~~~~~~~~~~~~~~~~i~~~~d----L~g---~~i~~--~~g 117 (226)
T 1wdn_A 47 PMDFSGIIPALQTKNVDLALAGITITDERKKAIDFSDGYYKSGLLVMVKANNNDVKSVKD----LDG---KVVAV--KSG 117 (226)
T ss_dssp EECGGGHHHHHHTTSSSEEEEEEECCHHHHTTSEECSCCEEEEEEEEEETTCCSCSSSTT----TTT---CEEEE--ETT
T ss_pred ECCHHHHHHHHhCCCCCEEEEcCcCCHHHhCccccccchhcCceEEEEeCCCCCCCCHHH----hCC---CEEEE--EcC
Confidence 34789999999999999999999999999999999999999999999998864 555544 344 34444 334
Q ss_pred HHHHHHHHHH
Q psy13439 112 SAFTIFFFEW 121 (261)
Q Consensus 112 ~~~~~~l~~~ 121 (261)
+....++.+.
T Consensus 118 ~~~~~~l~~~ 127 (226)
T 1wdn_A 118 TGSVDYAKAN 127 (226)
T ss_dssp SHHHHHHHHH
T ss_pred CcHHHHHHHh
Confidence 4444455444
No 22
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A*
Probab=97.76 E-value=3e-05 Score=66.31 Aligned_cols=60 Identities=20% Similarity=0.113 Sum_probs=53.7
Q ss_pred eCCchhhHHHHHhcCceeEEEeCCCCChhhhhhccccccccccceEEEEEccCCCCCccc
Q psy13439 32 ENGKWNGLIADLVNRKTDMALTSLVINSRRESVVDFTVPIMETGIAIVVAKRTGIISPTA 91 (261)
Q Consensus 32 ~~~~~~gli~~L~~g~~Di~i~~i~it~eR~~~vdfS~py~~~~~~~lv~~~~~~~~~~~ 91 (261)
...+|..++.+|.+|++|+++++++.+++|.+.++||.||+..+..++++++....++.+
T Consensus 68 ~~~~~~~~~~~l~~g~~D~~~~~~~~t~~r~~~~~~s~p~~~~~~~l~~~~~~~i~sl~d 127 (287)
T 2vha_A 68 IPITSQNRIPLLQNGTFDFECGSTTNNVERQKQAAFSDTIFVVGTRLLTKKGGDIKDFAD 127 (287)
T ss_dssp EECCTTTHHHHHHTTSCSEECSSCBCCHHHHTTCEEEEEEEEEEEEEEEETTSSCCSGGG
T ss_pred EECCHHHHHHHHHCCCeeEEeccccCCcchhhcccccceeeecceEEEEECCCCCCCHHH
Confidence 455789999999999999999999999999999999999999999999999876666555
No 23
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp}
Probab=97.74 E-value=5.3e-05 Score=61.95 Aligned_cols=79 Identities=20% Similarity=0.324 Sum_probs=61.0
Q ss_pred CCchhhHHHHHhcCceeEEEeCCCCChhhhhhcccccccccc-ceEEEEEccCCCCCcccccCCCCcccccceehhhhHH
Q psy13439 33 NGKWNGLIADLVNRKTDMALTSLVINSRRESVVDFTVPIMET-GIAIVVAKRTGIISPTAFLEPFDTASWMLVGVVAIQA 111 (261)
Q Consensus 33 ~~~~~gli~~L~~g~~Di~i~~i~it~eR~~~vdfS~py~~~-~~~~lv~~~~~~~~~~~~l~pF~~~vW~~i~~~~l~~ 111 (261)
..+|+.++.+|.+|++|++++++..+++|.+.+.|+.||+.. ...++++++. ..++.+ +.+ ..+++ ..+
T Consensus 51 ~~~~~~~~~~l~~g~~D~~~~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~~-~~~~~d----L~g---~~v~~--~~g 120 (229)
T 2y7i_A 51 NQSFDSLIPSLRFKKFDAVIAGMDMTPKREQQVSFSQPYYEGLSAVVVTRKGA-YHTFAD----LKG---KKVGL--ENG 120 (229)
T ss_dssp ECCGGGHHHHHHTTSCSEECSSCBCCHHHHTTSEECSCSBCCCCEEEEEETTS-CCSTGG----GTT---CEEEE--ETT
T ss_pred EcCHHHHHHHHhCCCceEEEecCccCHHHhcceeeccccccCCcEEEEEeCCC-CCCHHH----HCC---CEEEE--ecC
Confidence 347899999999999999999999999999999999999999 9999999887 555555 344 34444 334
Q ss_pred HHHHHHHHHH
Q psy13439 112 SAFTIFFFEW 121 (261)
Q Consensus 112 ~~~~~~l~~~ 121 (261)
+....++.+.
T Consensus 121 ~~~~~~l~~~ 130 (229)
T 2y7i_A 121 TTHQRYLQDK 130 (229)
T ss_dssp SHHHHHHHHH
T ss_pred CcHHHHHHHh
Confidence 4444455443
No 24
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=97.74 E-value=2.7e-05 Score=63.79 Aligned_cols=57 Identities=16% Similarity=0.295 Sum_probs=51.4
Q ss_pred chhhHHHHHhcCceeEEEeCCCCChhhh--hhccccccccccceEEEEEccC--CCCCccc
Q psy13439 35 KWNGLIADLVNRKTDMALTSLVINSRRE--SVVDFTVPIMETGIAIVVAKRT--GIISPTA 91 (261)
Q Consensus 35 ~~~gli~~L~~g~~Di~i~~i~it~eR~--~~vdfS~py~~~~~~~lv~~~~--~~~~~~~ 91 (261)
+|+.++.+|.+|++|+++++++.+++|. +.++|+.||+.....++++++. ...++.+
T Consensus 53 ~~~~~~~~l~~g~~D~~~~~~~~~~~r~~~~~~~~s~p~~~~~~~~~~~~~~~~~i~~~~d 113 (233)
T 1ii5_A 53 SISAGITAVAEGELDILIGPISVTPERAAIEGITFTQPYFSSGIGLLIPGTATPLFRSVGD 113 (233)
T ss_dssp CHHHHHHHHHTTSCSEEEEEEECCHHHHTSTTEEECCCCEEEEEEEEEEGGGTTTCSSGGG
T ss_pred CHHHHHHHHHCCCcCEEEeeeecCccccccceeEEccceeecCeEEEEECCCCCCCCCHHH
Confidence 7999999999999999999999999999 9999999999999999999876 4555544
No 25
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei}
Probab=97.74 E-value=3e-05 Score=64.85 Aligned_cols=81 Identities=23% Similarity=0.391 Sum_probs=62.9
Q ss_pred CCchhhHHHHHhcCceeEEEeCCCCChhhhhhccccccccccceEEEEEccC-CCCCcccccCCCCcccccceehhhhHH
Q psy13439 33 NGKWNGLIADLVNRKTDMALTSLVINSRRESVVDFTVPIMETGIAIVVAKRT-GIISPTAFLEPFDTASWMLVGVVAIQA 111 (261)
Q Consensus 33 ~~~~~gli~~L~~g~~Di~i~~i~it~eR~~~vdfS~py~~~~~~~lv~~~~-~~~~~~~~l~pF~~~vW~~i~~~~l~~ 111 (261)
..+|..++.+|.+|++|+++++++.+++|.+.++||.||+.....++++++. ...++.+ +.+ ..+++ ..+
T Consensus 68 ~~~~~~~~~~l~~g~~D~~~~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~~~i~~~~d----L~g---~~i~v--~~g 138 (249)
T 4f3p_A 68 PMDFAGLIPALQTQNIDVALSGMTIKEERRKAIDFSDPYYDSGLAAMVQANNTTIKSIDD----LNG---KVIAA--KTG 138 (249)
T ss_dssp EECGGGHHHHHHTTSCSEEEEEEECCHHHHTTEEECSCCEEEEEEEEEETTCCSCCSSGG----GTT---SEEEE--ETT
T ss_pred ecCHHHHHHHHHCCCCCEEEeccccCHHHHcCcceecceeeccEEEEEECCCCCcCChHH----hCC---CEEEE--eCC
Confidence 4468999999999999999999999999999999999999999999999886 3555555 334 34444 345
Q ss_pred HHHHHHHHHHh
Q psy13439 112 SAFTIFFFEWL 122 (261)
Q Consensus 112 ~~~~~~l~~~~ 122 (261)
+....++.+..
T Consensus 139 ~~~~~~l~~~~ 149 (249)
T 4f3p_A 139 TATIDWIKAHL 149 (249)
T ss_dssp SHHHHHHHHHC
T ss_pred ChHHHHHHhcC
Confidence 55555555544
No 26
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0
Probab=97.73 E-value=4.5e-05 Score=63.18 Aligned_cols=79 Identities=16% Similarity=0.184 Sum_probs=61.5
Q ss_pred eCCchhhHHHHHhcCceeEEEeCCCCChhhhhhcccccccc--ccceEEEEEccCCCCCcccccCCCCcccccceehhhh
Q psy13439 32 ENGKWNGLIADLVNRKTDMALTSLVINSRRESVVDFTVPIM--ETGIAIVVAKRTGIISPTAFLEPFDTASWMLVGVVAI 109 (261)
Q Consensus 32 ~~~~~~gli~~L~~g~~Di~i~~i~it~eR~~~vdfS~py~--~~~~~~lv~~~~~~~~~~~~l~pF~~~vW~~i~~~~l 109 (261)
...+|+.++.+|.+|++|+++++++.+++|.+.++| .||+ ..+..++++++....++.++ .+ ..+++ .
T Consensus 55 ~~~~~~~~~~~l~~g~~D~~~~~~~~~~~r~~~~~~-~p~~~~~~~~~~~~~~~~~i~~~~dL----~g---~~i~v--~ 124 (242)
T 3del_B 55 REFSFDALILNLKQHRIDAVITGMSITPSRLKEILM-IPYYGEEIKHLVLVFKGENKHPLPLT----QY---RSVAV--Q 124 (242)
T ss_dssp EECCGGGHHHHHHTTSSSEECSSBBCCHHHHTTEEE-EEEEEEEESEEEEEEESCCSCCCCGG----GS---SCEEE--E
T ss_pred EEcCHHHHHHHHhCCCcCEEEecCcCCHHHHhcccc-eeeeecCCceEEEEeCCCCCCCHHHh----CC---CEEEE--E
Confidence 344799999999999999999999999999999999 9999 89999999988666665553 34 34444 3
Q ss_pred HHHHHHHHHHH
Q psy13439 110 QASAFTIFFFE 120 (261)
Q Consensus 110 ~~~~~~~~l~~ 120 (261)
.++....++..
T Consensus 125 ~g~~~~~~l~~ 135 (242)
T 3del_B 125 TGTYQEAYLQS 135 (242)
T ss_dssp TTSHHHHHHHH
T ss_pred cCcHHHHHHHh
Confidence 35555555544
No 27
>2ozz_A Hypothetical protein YHFZ; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.30A {Shigella flexneri 2A} SCOP: c.94.1.1
Probab=97.71 E-value=1.5e-05 Score=67.72 Aligned_cols=56 Identities=13% Similarity=0.016 Sum_probs=50.8
Q ss_pred eEeeCC-chhhHHHHHhcCceeEEEeCCCCChh------hhhhccccccccccceEEEEEccC
Q psy13439 29 LSVENG-KWNGLIADLVNRKTDMALTSLVINSR------RESVVDFTVPIMETGIAIVVAKRT 84 (261)
Q Consensus 29 g~~~~~-~~~gli~~L~~g~~Di~i~~i~it~e------R~~~vdfS~py~~~~~~~lv~~~~ 84 (261)
.++..+ .|++.+++|++|++|+++++++.+++ |.+.+||+.||+.+...++++++.
T Consensus 46 ~~i~~mrg~~~RI~aL~~gk~D~aI~S~~aa~e~~~~~~r~~~vdFg~~yYv~~h~li~~~~~ 108 (231)
T 2ozz_A 46 FYYAHMRGADIRVECLLNGVYDMAVVSRLAAESYLSQNNLCIALELGPHTYVGEHQLICRKGE 108 (231)
T ss_dssp EEEEECSCHHHHHHHHHTTSCSEEEEEHHHHHHHHHHSCEEEEEECCTTSSSCCEEEEEETTC
T ss_pred EEEEEccChHHHHHHHHcCCCCEEEEecccchhhhcccCeEEEEEcCCCccccCeEEEEeCCC
Confidence 445677 89999999999999999999999999 999999999999888888888875
No 28
>2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A*
Probab=97.69 E-value=3.7e-05 Score=64.41 Aligned_cols=60 Identities=18% Similarity=0.289 Sum_probs=52.4
Q ss_pred eCCchhhHHHHHhcCceeEEEeCCCCChhhhhhccccccccccceEEEEEccCC--CCCccc
Q psy13439 32 ENGKWNGLIADLVNRKTDMALTSLVINSRRESVVDFTVPIMETGIAIVVAKRTG--IISPTA 91 (261)
Q Consensus 32 ~~~~~~gli~~L~~g~~Di~i~~i~it~eR~~~vdfS~py~~~~~~~lv~~~~~--~~~~~~ 91 (261)
...+|+.++.+|.+|++|+++++++.|++|.+.++||.||+.....++++++.. ..++.+
T Consensus 57 ~~~~~~~~~~~l~~g~~D~~~~~~~~t~~r~~~~~~s~p~~~~~~~~~~~~~~~~~i~~~~d 118 (257)
T 2q88_A 57 SISEYGAMIPGLQAGRHDAITAGLFMKPERCAAVAYSQPILCDAEAFALKKGNPLGLKSYKD 118 (257)
T ss_dssp EECCGGGHHHHHHTTSCSEECSCCBCCHHHHTTSEECSCCCEECEEEEEETTCTTCCCBHHH
T ss_pred EeCCHHHHHHHHHCCCcCEEEecccCCHHHHhccccccchhcCceEEEEECCCccCCCCHHH
Confidence 345799999999999999999999999999999999999999999999998863 444444
No 29
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A*
Probab=97.67 E-value=5e-05 Score=64.51 Aligned_cols=83 Identities=22% Similarity=0.358 Sum_probs=63.6
Q ss_pred eeCCchhhHHHHHhcCceeEEEeCCCCChhhhhhccccccccccceEEEEEccCCCCCcccccCCCCcccccceehhhhH
Q psy13439 31 VENGKWNGLIADLVNRKTDMALTSLVINSRRESVVDFTVPIMETGIAIVVAKRTGIISPTAFLEPFDTASWMLVGVVAIQ 110 (261)
Q Consensus 31 ~~~~~~~gli~~L~~g~~Di~i~~i~it~eR~~~vdfS~py~~~~~~~lv~~~~~~~~~~~~l~pF~~~vW~~i~~~~l~ 110 (261)
+...+|..++.+|.+|++|+++++++.+++|.+.+.|+.||+.....++++++....++.++ .+ ..+++ ..
T Consensus 84 ~~~~~~~~~~~~l~~G~~D~~~~~~~~~~~r~~~~~~s~p~~~~~~~l~~~~~~~i~~~~dL----~g---~~i~~--~~ 154 (272)
T 2pvu_A 84 LKNIGWDPLFASLQSKEVDMGISGITITDERKQSYDFSDPYFEATQVILVKQGSPVKNALDL----KG---KTIGV--QN 154 (272)
T ss_dssp EEECCHHHHHHHHHHTSSSEECSSCBCCHHHHTTEEECSCCEEECEEEEEETTCCCCSGGGG----TT---SCEEE--ET
T ss_pred EEECCHHHHHHHHhCCCCCEEEeCCcCCHHHHhcCccchhhhccceEEEEECCCCCCCHHHh----CC---CeEEE--Ec
Confidence 34556999999999999999999999999999999999999999999999998776665553 34 33443 33
Q ss_pred HHHHHHHHHHHh
Q psy13439 111 ASAFTIFFFEWL 122 (261)
Q Consensus 111 ~~~~~~~l~~~~ 122 (261)
++....++.+.+
T Consensus 155 g~~~~~~l~~~~ 166 (272)
T 2pvu_A 155 ATTGQEAAEKLF 166 (272)
T ss_dssp TSHHHHHHHHHH
T ss_pred CchHHHHHHHhc
Confidence 444444555443
No 30
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1
Probab=97.62 E-value=8.1e-05 Score=63.94 Aligned_cols=61 Identities=23% Similarity=0.304 Sum_probs=54.1
Q ss_pred eeCCchhhHHHHHhcCceeEEEeCCCCChhhhhhccccccccccceEEEEEccCCCCCccc
Q psy13439 31 VENGKWNGLIADLVNRKTDMALTSLVINSRRESVVDFTVPIMETGIAIVVAKRTGIISPTA 91 (261)
Q Consensus 31 ~~~~~~~gli~~L~~g~~Di~i~~i~it~eR~~~vdfS~py~~~~~~~lv~~~~~~~~~~~ 91 (261)
+...+|+.++.+|.+|++|+++++++.+++|.+.++|+.||+..+..++++++....++.+
T Consensus 90 ~~~~~~~~~~~~l~~G~~D~~~~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~~i~~~~d 150 (292)
T 1xt8_A 90 FVLVEAANRVEFLKSNKVDIILANFTQTPQRAEQVDFCSPYMKVALGVAVPKDSNITSVED 150 (292)
T ss_dssp EEECCGGGHHHHHHTTSCSEECSSCBCCHHHHTTEEECCCCEEEEEEEEEETTCCCCSSGG
T ss_pred EEEcCHHHHHHHHhCCCeeEEeecCCCCcchhcceeeeccceecceEEEEECCCCCCCHHH
Confidence 4455789999999999999999999999999999999999999999999999876666655
No 31
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=97.61 E-value=8.4e-05 Score=64.06 Aligned_cols=83 Identities=18% Similarity=0.231 Sum_probs=64.0
Q ss_pred eeCCchhhHHHHHhcCceeEEEeCCCCChhhhhhccccccccccceEEEEEccCCCCCcccccCCCCcccccceehhhhH
Q psy13439 31 VENGKWNGLIADLVNRKTDMALTSLVINSRRESVVDFTVPIMETGIAIVVAKRTGIISPTAFLEPFDTASWMLVGVVAIQ 110 (261)
Q Consensus 31 ~~~~~~~gli~~L~~g~~Di~i~~i~it~eR~~~vdfS~py~~~~~~~lv~~~~~~~~~~~~l~pF~~~vW~~i~~~~l~ 110 (261)
+...+|..++.+|.+|++|++++++..+++|.+.++|+.||+..+..++++++....++.++ .+ ..+++ ..
T Consensus 101 ~~~~~~~~~~~~l~~G~~D~~~~~~~~~~~r~~~~~~~~p~~~~~~~l~~~~~~~i~sl~dL----~g---k~v~~--~~ 171 (291)
T 2yjp_A 101 FVLTEAANRVEYVRSGKVDLILANFTQTPERAEAVDFADPYMKVALGVVSPKNKPITDMAQL----KD---QTLLV--NK 171 (291)
T ss_dssp EEECCGGGHHHHHHTTSCSEECSSCBCCHHHHTTEEECCCCEEECEEEEEETTSCCCSGGGG----TT---SEEEE--ET
T ss_pred EEEccHHHHHHHHhCCCeeEEEeCCCCChHHHccceeccCeeecceEEEEeCCCCCCCHHHh----CC---CEEEE--ec
Confidence 44556899999999999999999999999999999999999999999999998766666653 34 33443 33
Q ss_pred HHHHHHHHHHHh
Q psy13439 111 ASAFTIFFFEWL 122 (261)
Q Consensus 111 ~~~~~~~l~~~~ 122 (261)
+++...++....
T Consensus 172 g~~~~~~l~~~~ 183 (291)
T 2yjp_A 172 GTTADAFFTKSH 183 (291)
T ss_dssp TSHHHHHHHHHC
T ss_pred CCcHHHHHHHhC
Confidence 444444554443
No 32
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=97.59 E-value=8.9e-05 Score=63.70 Aligned_cols=62 Identities=18% Similarity=0.354 Sum_probs=54.8
Q ss_pred eeCCchhhHHHHHhcCceeEEEeCCCC-ChhhhhhccccccccccceEEEEEccCCCCCcccc
Q psy13439 31 VENGKWNGLIADLVNRKTDMALTSLVI-NSRRESVVDFTVPIMETGIAIVVAKRTGIISPTAF 92 (261)
Q Consensus 31 ~~~~~~~gli~~L~~g~~Di~i~~i~i-t~eR~~~vdfS~py~~~~~~~lv~~~~~~~~~~~~ 92 (261)
+...+|..++.+|.+|++|+++++++. +++|.+.++|+.||+..+..++++++....++.++
T Consensus 100 ~~~~~~~~~~~~l~~G~~D~~~~~~~~~t~~r~~~~~~~~p~~~~~~~l~~~~~~~i~s~~dL 162 (283)
T 2yln_A 100 FKETQWDSMMAGLKAGRFDVVANQVGLTSPERQATFDKSEPYSWSGAVLVAHNDSNIKSIADI 162 (283)
T ss_dssp EEECCGGGHHHHHHHTSCSEECSSCCCCSHHHHHHEEECSCSEEECEEEEEETTCSCCSGGGC
T ss_pred EEECCHHHHHHHHHCCCcCEEEecCccCChhhhcceEeccCeeeecEEEEEECCCCCCCHHHh
Confidence 445569999999999999999999988 99999999999999999999999998776666553
No 33
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=97.59 E-value=7.7e-05 Score=62.09 Aligned_cols=61 Identities=18% Similarity=0.219 Sum_probs=54.2
Q ss_pred eeCCchhhHHHHHhcCceeEEEeCCCCChhhhhhccccccccccceEEEEEccCCCCCccc
Q psy13439 31 VENGKWNGLIADLVNRKTDMALTSLVINSRRESVVDFTVPIMETGIAIVVAKRTGIISPTA 91 (261)
Q Consensus 31 ~~~~~~~gli~~L~~g~~Di~i~~i~it~eR~~~vdfS~py~~~~~~~lv~~~~~~~~~~~ 91 (261)
+...+|..++.+|.+|++|+++++++.+++|.+.++|+.||+..+..++++++....++.+
T Consensus 85 ~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~i~~~~d 145 (259)
T 2v25_A 85 LVAVNAKTRGPLLDNGSVDAVIATFTITPERKRIYNFSEPYYQDAIGLLVLKEKKYKSLAD 145 (259)
T ss_dssp EEECCTTTHHHHHHTTSCSEECSSCBCCHHHHTTEEECSCSEEEEEEEEEEGGGCCCSGGG
T ss_pred EEEcCHHHHHHHHhCCCCCEEEecCccCHHHHhcCcccccceeCceEEEEeCCCCCCCHHH
Confidence 4456789999999999999999999999999999999999999999999999876666655
No 34
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=97.58 E-value=8.7e-05 Score=60.38 Aligned_cols=50 Identities=26% Similarity=0.543 Sum_probs=45.9
Q ss_pred chhhHHHHHhcCceeEEEeCCCCChhhhhhccccccccccceEEEEEccC
Q psy13439 35 KWNGLIADLVNRKTDMALTSLVINSRRESVVDFTVPIMETGIAIVVAKRT 84 (261)
Q Consensus 35 ~~~gli~~L~~g~~Di~i~~i~it~eR~~~vdfS~py~~~~~~~lv~~~~ 84 (261)
+|..++.+|.+|++|+++++++.+++|.+.+.|+.||+..+..++++++.
T Consensus 49 ~~~~~~~~l~~g~~D~~~~~~~~~~~r~~~~~~~~p~~~~~~~~~~~~~~ 98 (228)
T 2pyy_A 49 SVPELISAIKDNKVNLGIAAISITAEREQNFDFSLPIFASGLQIMVRNLE 98 (228)
T ss_dssp SHHHHHHHHHTTSCSEECSSCBCCHHHHHHSEECSCSEEEEEEEEEEC--
T ss_pred CHHHHHHHHHCCCcCEEEeccccCHHHHccceecccchhcceEEEEECCc
Confidence 58999999999999999999999999999999999999999999999874
No 35
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae}
Probab=97.58 E-value=0.00011 Score=61.64 Aligned_cols=83 Identities=19% Similarity=0.293 Sum_probs=63.2
Q ss_pred eeCCchhhHHHHHhcCceeEEEeCCCCChhhhhhccccccccccceEEEEEcc--CCCCCcccccCCCCcccccceehhh
Q psy13439 31 VENGKWNGLIADLVNRKTDMALTSLVINSRRESVVDFTVPIMETGIAIVVAKR--TGIISPTAFLEPFDTASWMLVGVVA 108 (261)
Q Consensus 31 ~~~~~~~gli~~L~~g~~Di~i~~i~it~eR~~~vdfS~py~~~~~~~lv~~~--~~~~~~~~~l~pF~~~vW~~i~~~~ 108 (261)
+...+|..++.+|.+|++|++++++..+++|.+.+.|+.||+.....++++++ ....++.+ +.+ ..+++
T Consensus 85 ~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~~~~i~~~~d----L~g---~~i~~-- 155 (269)
T 4i62_A 85 LSPMSFDNVLASVQSGKADLAISGVSKTDERSKVFDFSTPYYTAKNKLIVKKSDLATYQSVND----LAQ---KKVGA-- 155 (269)
T ss_dssp EEECCHHHHHHHHHTTSCSEECSSCBCCHHHHTTEEECSCCEECCEEEEEEGGGTTTCSSGGG----GC----CEEEE--
T ss_pred EEEcCHHHHHHHHhCCCccEEecCCcCCHhHhhceecccchhhcceEEEEECCccccccCHHH----hCC---CeEEE--
Confidence 34458999999999999999999999999999999999999999999999988 44555555 344 34444
Q ss_pred hHHHHHHHHHHHHh
Q psy13439 109 IQASAFTIFFFEWL 122 (261)
Q Consensus 109 l~~~~~~~~l~~~~ 122 (261)
..++....++.+..
T Consensus 156 ~~g~~~~~~l~~~~ 169 (269)
T 4i62_A 156 QKGSIQETMAKDLL 169 (269)
T ss_dssp ETTSHHHHHHHHHC
T ss_pred ecCchHHHHHHHhC
Confidence 33444455555443
No 36
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A
Probab=97.52 E-value=0.00015 Score=61.51 Aligned_cols=80 Identities=28% Similarity=0.375 Sum_probs=60.5
Q ss_pred CCchhhHHHHHhcCceeEEEeCCCCChhhhhhccccccccccceEEEEEccC-CCCCcccccCCCCcccccceehhhhHH
Q psy13439 33 NGKWNGLIADLVNRKTDMALTSLVINSRRESVVDFTVPIMETGIAIVVAKRT-GIISPTAFLEPFDTASWMLVGVVAIQA 111 (261)
Q Consensus 33 ~~~~~gli~~L~~g~~Di~i~~i~it~eR~~~vdfS~py~~~~~~~lv~~~~-~~~~~~~~l~pF~~~vW~~i~~~~l~~ 111 (261)
..+|+.++.+|.+|++|+++ +++.+++|.+.+.||.||+..+..++++++. ...++.+ +.+ ..+++ ..+
T Consensus 78 ~~~~~~~~~~l~~G~~D~~~-~~~~t~~r~~~~~fs~p~~~~~~~l~~~~~~~~i~~~~d----L~g---~~i~v--~~g 147 (267)
T 3mpk_A 78 VDTVEELIAKLRSGEADMAG-ALFVNSARESFLSFSRPYVRNGMVIVTRQDPDAPVDADH----LDG---RTVAL--VRN 147 (267)
T ss_dssp ESSHHHHHHHHHHTSCSEEE-EEECCGGGTTTEEECSCSEEECEEEEEESSTTSCSSGGG----CTT---CEEEE--ETT
T ss_pred cCCHHHHHHHHHCCCccEEe-cccCChhhhcceEechhhccCceEEEEECCCCCCCCHHH----HCC---CEEEE--eCC
Confidence 34699999999999999976 8999999999999999999999999999874 3444444 344 44544 334
Q ss_pred HHHHHHHHHHh
Q psy13439 112 SAFTIFFFEWL 122 (261)
Q Consensus 112 ~~~~~~l~~~~ 122 (261)
++...++.+..
T Consensus 148 ~~~~~~l~~~~ 158 (267)
T 3mpk_A 148 SAAIPLLQRRY 158 (267)
T ss_dssp CTHHHHHHHHC
T ss_pred chhHHHHHHhC
Confidence 44555555443
No 37
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0
Probab=97.48 E-value=9.2e-05 Score=60.59 Aligned_cols=58 Identities=19% Similarity=0.318 Sum_probs=51.1
Q ss_pred CCchhhHHHHHhcCceeEEEeCCCCChhhhhhccccccccccceEEEEEccCC-CCCccc
Q psy13439 33 NGKWNGLIADLVNRKTDMALTSLVINSRRESVVDFTVPIMETGIAIVVAKRTG-IISPTA 91 (261)
Q Consensus 33 ~~~~~gli~~L~~g~~Di~i~~i~it~eR~~~vdfS~py~~~~~~~lv~~~~~-~~~~~~ 91 (261)
..+|..++.+|.+|++|++ ++++.+++|.+.+.||.||+.....++++++.. ..++.+
T Consensus 56 ~~~~~~~~~~l~~g~~D~~-~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~~~~~~~~d 114 (234)
T 3h7m_A 56 LGAWSEMFSALKSGRVDVL-QGISWSEKRARQIDFTPPHTIVYHAIFARRDSPPAAGLED 114 (234)
T ss_dssp EECGGGHHHHHHTTSSSEE-EEEECCHHHHTTEEEEEEEEEEEEEEEEESSSCCCSSGGG
T ss_pred eCCHHHHHHHHhCCCeeEE-EeccCCHhHHhhcCCCccccccceEEEEECCCCCCCCHHH
Confidence 4468999999999999995 789999999999999999999999999999876 555555
No 38
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A*
Probab=97.42 E-value=0.00021 Score=59.78 Aligned_cols=59 Identities=22% Similarity=0.322 Sum_probs=51.9
Q ss_pred eCCchhhHHHHHhcCceeEEEeCCCCChhhhhhcccccccc--ccceEEEEEcc-CCCCCccc
Q psy13439 32 ENGKWNGLIADLVNRKTDMALTSLVINSRRESVVDFTVPIM--ETGIAIVVAKR-TGIISPTA 91 (261)
Q Consensus 32 ~~~~~~gli~~L~~g~~Di~i~~i~it~eR~~~vdfS~py~--~~~~~~lv~~~-~~~~~~~~ 91 (261)
...+|+.++.+|.+|++|+++++++.+++|.+.++| .||+ ..+..++++++ ....++.+
T Consensus 75 ~~~~~~~~~~~l~~g~~D~~~~~~~~~~~r~~~~~~-~p~~~~~~~~~~~~~~~~~~i~~~~d 136 (268)
T 3qax_A 75 REFAFDALILNLKKHRIDAILAGMSITPSRQKEIAL-LPYYGDEVQELMVVSKRSLETPVLPL 136 (268)
T ss_dssp EECCGGGHHHHHHHTSSSEECSCCBCCHHHHTTSEE-EEEECCCBCEEEEEEETTSCSCCCCG
T ss_pred EecCHHHHHHHHhCCCccEEeecCccCHhHhcceee-ecceecccceEEEEECCCCCCCCHHH
Confidence 445799999999999999999999999999999999 9999 99999999988 45555554
No 39
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=97.09 E-value=0.00082 Score=51.18 Aligned_cols=59 Identities=17% Similarity=0.237 Sum_probs=52.7
Q ss_pred CcchhhHHHHHHHHHhcccCCCCCCchhhHHHHHHHHHHHHHHHHhhcccceeeeeccc
Q psy13439 190 FSLFRTYWLVWAVLFQAAVHIDTPKGFTAKFMTNMWAMFAVVFLAIYTANLAAFMITRE 248 (261)
Q Consensus 190 ~~~~~s~~~~~~~l~~qg~~~~~p~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~~ 248 (261)
.++.+++|+++..+..-|.+.-.|.+..+|++...|.++++.+.+..++++++.++...
T Consensus 60 ~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~~~ 118 (122)
T 2ih3_C 60 ITYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGRE 118 (122)
T ss_dssp CSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccchhheeeeeeeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999988855449999999999999999999999999999999987653
No 40
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=96.90 E-value=0.00039 Score=51.31 Aligned_cols=59 Identities=19% Similarity=0.137 Sum_probs=52.6
Q ss_pred cchhhHHHHHHHHHhcccCCCCCCchhhHHHHHHHHHHHHHHHHhhcccceeeeecccc
Q psy13439 191 SLFRTYWLVWAVLFQAAVHIDTPKGFTAKFMTNMWAMFAVVFLAIYTANLAAFMITREE 249 (261)
Q Consensus 191 ~~~~s~~~~~~~l~~qg~~~~~p~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~~~ 249 (261)
++.+++|+++..+..-|.+.-.|.+..+|++...|.++++.+.+...+.+++.++....
T Consensus 40 ~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~l~G~~~~~~~~~~i~~~~~~~~~ 98 (103)
T 2k1e_A 40 SYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFALVTAALATDFVRREE 98 (103)
T ss_dssp CGGGTTTTTTGGGGCCSCCSSCCCSSSCTHHHHHHHHHHHHHHHHTHHHHHTTGGGHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999999888654489999999999999999999999999999999986543
No 41
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=96.76 E-value=0.0031 Score=50.07 Aligned_cols=59 Identities=12% Similarity=0.125 Sum_probs=52.8
Q ss_pred cchhhHHHHHHHHHhcccCCCCCCchhhHHHHHHHHHHHHHHHHhhcccceeeeecccc
Q psy13439 191 SLFRTYWLVWAVLFQAAVHIDTPKGFTAKFMTNMWAMFAVVFLAIYTANLAAFMITREE 249 (261)
Q Consensus 191 ~~~~s~~~~~~~l~~qg~~~~~p~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~~~ 249 (261)
++.+++|+++-++..-|.+.-.|.+..+|+++..+.++++.+.+..++.+++.++....
T Consensus 84 s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i~~~~~~~~~ 142 (155)
T 2a9h_A 84 SYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFVGREQ 142 (155)
T ss_dssp SHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred cccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999999888654489999999999999999999999999999999986543
No 42
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=95.90 E-value=0.011 Score=45.69 Aligned_cols=57 Identities=11% Similarity=0.278 Sum_probs=51.2
Q ss_pred cchhhHHHHHHHHHhcccCCCCCCchhhHHHHHHHHHHHHHHHHhhcccceeeeecc
Q psy13439 191 SLFRTYWLVWAVLFQAAVHIDTPKGFTAKFMTNMWAMFAVVFLAIYTANLAAFMITR 247 (261)
Q Consensus 191 ~~~~s~~~~~~~l~~qg~~~~~p~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~ 247 (261)
++.+++|+++.++..-|.+.-.|.+..+|+++..|.++++.+.+..++.+++.+...
T Consensus 43 ~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~~ 99 (137)
T 4h33_A 43 NYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRCK 99 (137)
T ss_dssp SHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTT
T ss_pred CHHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688999999999998886544999999999999999999999999999999988753
No 43
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=95.63 E-value=0.021 Score=44.12 Aligned_cols=59 Identities=14% Similarity=0.179 Sum_probs=52.1
Q ss_pred CCcchhhHHHHHHHHHhcccCCCCCCchhhHHHHHHHHHHHHHHHHhhcccceeeeecc
Q psy13439 189 RFSLFRTYWLVWAVLFQAAVHIDTPKGFTAKFMTNMWAMFAVVFLAIYTANLAAFMITR 247 (261)
Q Consensus 189 ~~~~~~s~~~~~~~l~~qg~~~~~p~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~ 247 (261)
..++.+++|+++..+..-|.+.-.|.+..+|+++..|.++++.+.+...+.+++.+...
T Consensus 38 ~~~~~~a~yf~~~T~tTvGyGd~~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~~~~~ 96 (139)
T 3eff_K 38 LITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGR 96 (139)
T ss_dssp CCCHHHHHHHHHHHHTTCCCSSSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHTTTTTHH
T ss_pred cCCHHHHHHHHheeeecccCCCCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34789999999999998886544999999999999999999999999999999988653
No 44
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=95.45 E-value=0.013 Score=42.56 Aligned_cols=61 Identities=10% Similarity=0.083 Sum_probs=53.8
Q ss_pred CcchhhHHHHHHHHHhcccCCCCCCchhhHHHHHHHHHHHHHHHHhhcccceeeeeccccc
Q psy13439 190 FSLFRTYWLVWAVLFQAAVHIDTPKGFTAKFMTNMWAMFAVVFLAIYTANLAAFMITREEF 250 (261)
Q Consensus 190 ~~~~~s~~~~~~~l~~qg~~~~~p~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~~~~ 250 (261)
.++.+++|++...+..-|.+.-.|.+..+|++...|.++++.+.+...+++++.++.++..
T Consensus 31 ~~~~~a~yf~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~i~~i~~~~~~~~~~ 91 (97)
T 3ouf_A 31 LRPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSIL 91 (97)
T ss_dssp CCHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred CCHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3789999999999998887644899999999999999999999999999999988866543
No 45
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=95.08 E-value=0.0062 Score=48.71 Aligned_cols=59 Identities=12% Similarity=0.161 Sum_probs=52.6
Q ss_pred CCcchhhHHHHHHHHHhcccCCCCCCchhhHHHHHHHHHHHHHHHHhhcccceeeeecc
Q psy13439 189 RFSLFRTYWLVWAVLFQAAVHIDTPKGFTAKFMTNMWAMFAVVFLAIYTANLAAFMITR 247 (261)
Q Consensus 189 ~~~~~~s~~~~~~~l~~qg~~~~~p~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~ 247 (261)
..++.+++|+++.++..-|.+.-.|.+..+|++++.|.++++++.+...+.+++.++..
T Consensus 65 ~~~~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~~~~~~ 123 (166)
T 3pjs_K 65 LITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGQ 123 (166)
T ss_dssp CCSTTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTTSSSSSSSS
T ss_pred cCCHHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34788999999999998886544999999999999999999999999999999999854
No 46
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=94.98 E-value=0.03 Score=41.85 Aligned_cols=57 Identities=11% Similarity=0.092 Sum_probs=50.4
Q ss_pred cchhhHHHHHHHHHhcccCCCCCCchhhHHHHHHHHHHHHHHHHhhcccceeeeecc
Q psy13439 191 SLFRTYWLVWAVLFQAAVHIDTPKGFTAKFMTNMWAMFAVVFLAIYTANLAAFMITR 247 (261)
Q Consensus 191 ~~~~s~~~~~~~l~~qg~~~~~p~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~ 247 (261)
++.+++|+++..+..-|.+.-.|.+..+|++...|.+.++.+.+...+++++.++..
T Consensus 49 ~~~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~~~~~~ 105 (114)
T 2q67_A 49 RPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLP 105 (114)
T ss_dssp CHHHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred CHHHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688999999999998887544899999999999999999999999999999887653
No 47
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=94.83 E-value=0.034 Score=38.94 Aligned_cols=54 Identities=11% Similarity=0.161 Sum_probs=47.8
Q ss_pred cchhhHHHHHHHHHhcccCCCCCCchhhHHHHHHHHHHHHHHHHhhcccceeee
Q psy13439 191 SLFRTYWLVWAVLFQAAVHIDTPKGFTAKFMTNMWAMFAVVFLAIYTANLAAFM 244 (261)
Q Consensus 191 ~~~~s~~~~~~~l~~qg~~~~~p~s~s~Ril~~~w~l~~lil~~~Yta~L~s~L 244 (261)
++.+++|++...+..-|.+.-.|++..+|++...+.+.++.+.+...+++++.+
T Consensus 28 ~~~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~l 81 (82)
T 3ldc_A 28 SWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFL 81 (82)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688999999999998886544899999999999999999999999888887654
No 48
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=93.99 E-value=0.07 Score=44.15 Aligned_cols=59 Identities=10% Similarity=0.088 Sum_probs=51.4
Q ss_pred CCcchhhHHHHHHHHHhcccCCCCCCchhhHHHHHHHHHHHHHHHHhhcccceeeeecc
Q psy13439 189 RFSLFRTYWLVWAVLFQAAVHIDTPKGFTAKFMTNMWAMFAVVFLAIYTANLAAFMITR 247 (261)
Q Consensus 189 ~~~~~~s~~~~~~~l~~qg~~~~~p~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~ 247 (261)
..++.+++|+++..+..-|.+.-.|.+..+|+++..+.+.++.+.+...|++++.++..
T Consensus 163 ~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~~G~~~~~~~i~~i~~~~~~~ 221 (223)
T 1orq_C 163 IKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSNMFQKI 221 (223)
T ss_dssp CCSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcchhHHHhHHhHHhccCCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34788999999999998885544899999999999999999999999999998887653
No 49
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=93.58 E-value=0.1 Score=40.64 Aligned_cols=55 Identities=11% Similarity=0.091 Sum_probs=49.3
Q ss_pred cchhhHHHHHHHHHhcccCCCCCCchhhHHHHHHHHHHHHHHHHhhcccceeeee
Q psy13439 191 SLFRTYWLVWAVLFQAAVHIDTPKGFTAKFMTNMWAMFAVVFLAIYTANLAAFMI 245 (261)
Q Consensus 191 ~~~~s~~~~~~~l~~qg~~~~~p~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt 245 (261)
++.+++|+++.++..-|.+.-.|.+..+|+++..|.++++.+.+...+++++.+.
T Consensus 52 ~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~ 106 (148)
T 3vou_A 52 RPLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAVNVQ 106 (148)
T ss_dssp CHHHHHHHHHHHHTTCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred CHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999988865449999999999999999999999999999888665
No 50
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=92.21 E-value=0.16 Score=44.48 Aligned_cols=62 Identities=13% Similarity=0.042 Sum_probs=54.0
Q ss_pred CCcchhhHHHHHHHHHhcccCCCCCCchhhHHHHHHHHHHHHHHHHhhcccceeeeeccccc
Q psy13439 189 RFSLFRTYWLVWAVLFQAAVHIDTPKGFTAKFMTNMWAMFAVVFLAIYTANLAAFMITREEF 250 (261)
Q Consensus 189 ~~~~~~s~~~~~~~l~~qg~~~~~p~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~~~~ 250 (261)
..++.+++|+++..+..-|.+.-.|.+..+|+++..+.+.++++.+.-++.+++.++.+..+
T Consensus 80 ~~s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~v~~~~~~~~~r 141 (301)
T 1xl4_A 80 PGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFTRPTAG 141 (301)
T ss_dssp TTCHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred cCCHHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhh
Confidence 34789999999999998776655899999999999999999999999999999998876543
No 51
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus}
Probab=91.94 E-value=0.2 Score=43.93 Aligned_cols=58 Identities=12% Similarity=-0.015 Sum_probs=44.2
Q ss_pred CchhhHHHHHhcCceeEEEeCCCCC----hhhhhhccccccccccceEEEEEccCCCCCccc
Q psy13439 34 GKWNGLIADLVNRKTDMALTSLVIN----SRRESVVDFTVPIMETGIAIVVAKRTGIISPTA 91 (261)
Q Consensus 34 ~~~~gli~~L~~g~~Di~i~~i~it----~eR~~~vdfS~py~~~~~~~lv~~~~~~~~~~~ 91 (261)
+++..++.+|.+|++|+++.+.... .++.+...++.++...+..+++++++.+.++.+
T Consensus 55 g~~~~~~~al~~G~~D~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~lvv~~~s~i~s~~D 116 (348)
T 3uif_A 55 SVGPVINEGFASGKIDFGIYGDLPPIILNASKPTVQLVAPWGTTSNSYLVVPKNSTAKSIKD 116 (348)
T ss_dssp CHHHHHHHHHHTTCCCEEEEESHHHHHHHHHSCCEEEEEECCCCCCCEEEEETTCCCCSGGG
T ss_pred CCcHHHHHHHHcCCCCEEecCcHHHHHHHhCCCCEEEEEeccCCCceEEEEECCCCCCCHHH
Confidence 3456689999999999999766544 455555666677888888999998877777666
No 52
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=91.33 E-value=0.17 Score=44.65 Aligned_cols=60 Identities=10% Similarity=0.063 Sum_probs=53.8
Q ss_pred cchhhHHHHHHHHHhcccCCCCCCchhhHHHHHHHHHHHHHHHHhhcccceeeeeccccc
Q psy13439 191 SLFRTYWLVWAVLFQAAVHIDTPKGFTAKFMTNMWAMFAVVFLAIYTANLAAFMITREEF 250 (261)
Q Consensus 191 ~~~~s~~~~~~~l~~qg~~~~~p~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~~~~ 250 (261)
++.+++|+++..+..-|.+.-.|.+..+|+++..+.+.++++.+.-++.+++.++.+...
T Consensus 78 s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~~~~~r 137 (321)
T 2qks_A 78 GFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQPKKR 137 (321)
T ss_dssp THHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCG
T ss_pred chhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 788999999999998887655899999999999999999999999999999999887554
No 53
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=91.20 E-value=0.14 Score=45.48 Aligned_cols=61 Identities=10% Similarity=0.032 Sum_probs=54.1
Q ss_pred CcchhhHHHHHHHHHhcccCCCCCCchhhHHHHHHHHHHHHHHHHhhcccceeeeeccccc
Q psy13439 190 FSLFRTYWLVWAVLFQAAVHIDTPKGFTAKFMTNMWAMFAVVFLAIYTANLAAFMITREEF 250 (261)
Q Consensus 190 ~~~~~s~~~~~~~l~~qg~~~~~p~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~~~~ 250 (261)
.++.+++|+++.++..-|.+.-.|.+..+|+++..+.+.++++.+.-++.+++.++.+..+
T Consensus 95 ~s~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~ig~i~~~~~~~~~r 155 (333)
T 1p7b_A 95 PGFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFARPRAK 155 (333)
T ss_dssp SSTHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCC
T ss_pred CcHHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3688999999999998887655899999999999999999999999999999999887654
No 54
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=90.51 E-value=0.32 Score=45.71 Aligned_cols=58 Identities=12% Similarity=0.134 Sum_probs=49.9
Q ss_pred CCcchhhHHHHHHHHHhcccCCCCCCchhhHHHHHHHHHHHHHHHHhhcccceeeeec
Q psy13439 189 RFSLFRTYWLVWAVLFQAAVHIDTPKGFTAKFMTNMWAMFAVVFLAIYTANLAAFMIT 246 (261)
Q Consensus 189 ~~~~~~s~~~~~~~l~~qg~~~~~p~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~ 246 (261)
..++.+++|+++.++..-|.+.-.|.+..+|++++.+.+.++++.+...|.+.+.+..
T Consensus 373 F~s~~~a~y~~~vT~TTvGYGDi~P~t~~gr~f~~~~~l~G~~~l~l~iavI~~~f~~ 430 (514)
T 2r9r_B 373 FPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNY 430 (514)
T ss_dssp CSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred ccchhhhhheeeeEEEecccCCCCCCCcchHhhehhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478899999999999887654489999999999999999999999999988876653
No 55
>3qsl_A Putative exported protein; unknown, structural genomics, PSI-biology, midwest center FO structural genomics, MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella bronchiseptica}
Probab=90.02 E-value=0.24 Score=42.70 Aligned_cols=60 Identities=13% Similarity=0.160 Sum_probs=47.1
Q ss_pred CCchhhHHHHHhcCceeEEEeCCCCC----hhhhhhccccccccccceEEEEEccC--CCCCcccc
Q psy13439 33 NGKWNGLIADLVNRKTDMALTSLVIN----SRRESVVDFTVPIMETGIAIVVAKRT--GIISPTAF 92 (261)
Q Consensus 33 ~~~~~gli~~L~~g~~Di~i~~i~it----~eR~~~vdfS~py~~~~~~~lv~~~~--~~~~~~~~ 92 (261)
..++..++.+|.+|++|+++++...+ .++.....++.++...+..++++++. .++++.++
T Consensus 71 ~~~~~~~~~~l~~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~i~s~~DL 136 (346)
T 3qsl_A 71 FAGGSKALQAVVGGSADVVSGAFEHTLSLQAKGQFYRAFALQGRAPMIGVGVSKKNLPGYKGPADL 136 (346)
T ss_dssp CSSHHHHHHHHHTTSCSEEEEETHHHHHHHHTTCCEEEEEESBSSCCEEEEEETTTCTTCCSGGGG
T ss_pred cCChHHHHHHHHCCCCCEEccchHHHHHHHhCCCCeEEEEecccCCCcEEEEecCcccCCCChHHc
Confidence 55688999999999999999887655 45556677777777778889999876 67776663
No 56
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=89.26 E-value=0.41 Score=41.99 Aligned_cols=58 Identities=7% Similarity=0.146 Sum_probs=51.2
Q ss_pred CCcchhhHHHHHHHHHhcccCCCCCCchhhHHHHHHHHHHHHHHHHhhcccceeeeec
Q psy13439 189 RFSLFRTYWLVWAVLFQAAVHIDTPKGFTAKFMTNMWAMFAVVFLAIYTANLAAFMIT 246 (261)
Q Consensus 189 ~~~~~~s~~~~~~~l~~qg~~~~~p~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~ 246 (261)
.-++.+++|++...+..-|.+.-.|.+..+|++.+.+.++++.+.....++++..+..
T Consensus 113 ~w~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l~~ 170 (309)
T 3um7_A 113 AWDLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLGS 170 (309)
T ss_dssp CCSHHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChhhhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3589999999999999888765599999999999999999999999999988887753
No 57
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=88.93 E-value=0.34 Score=42.76 Aligned_cols=56 Identities=14% Similarity=0.258 Sum_probs=49.6
Q ss_pred cchhhHHHHHHHHHhcccCCCCCCchhhHHHHHHHHHHHHHHHHhhcccceeeeec
Q psy13439 191 SLFRTYWLVWAVLFQAAVHIDTPKGFTAKFMTNMWAMFAVVFLAIYTANLAAFMIT 246 (261)
Q Consensus 191 ~~~~s~~~~~~~l~~qg~~~~~p~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~ 246 (261)
++.+++|+++.++..-|.+.-.|.+..+|+++..+.++++++.+..++.+++.+..
T Consensus 161 ~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~ 216 (355)
T 3beh_A 161 SIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAGILATGFYQ 216 (355)
T ss_dssp SHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999877543489999999999999999999999999999888764
No 58
>3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125}
Probab=88.51 E-value=0.33 Score=41.35 Aligned_cols=55 Identities=15% Similarity=0.070 Sum_probs=42.0
Q ss_pred hhHHHHHhcCceeEEEeC-CCCChhhhh---hccccccccccceEEEEEccCCCCCccc
Q psy13439 37 NGLIADLVNRKTDMALTS-LVINSRRES---VVDFTVPIMETGIAIVVAKRTGIISPTA 91 (261)
Q Consensus 37 ~gli~~L~~g~~Di~i~~-i~it~eR~~---~vdfS~py~~~~~~~lv~~~~~~~~~~~ 91 (261)
..++.+|.+|++|+++++ ......|.+ ...++.++...+..+++++++.++++.+
T Consensus 45 ~~~~~~l~~G~~D~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~s~i~s~~D 103 (302)
T 3ix1_A 45 TDPIQLTASGAIPLALSYQPDVILARSKDLPVVSVASVVRSPLNHVMFLAEQDFDSPAD 103 (302)
T ss_dssp THHHHHHHHTSCSEEEECHHHHHHHHHTTCCEEEEEEEECSCCEEEEEEGGGCCSSGGG
T ss_pred chHHHHHHCCCCCEEecCHHHHHHHHHCCCCEEEEEEEeccCCEEEEEECCCCCCChHH
Confidence 489999999999999988 344455554 4556667777788999998877777665
No 59
>2x26_A Periplasmic aliphatic sulphonates-binding protein; transport protein; 1.75A {Escherichia coli}
Probab=87.90 E-value=0.58 Score=39.74 Aligned_cols=54 Identities=17% Similarity=0.057 Sum_probs=39.7
Q ss_pred hhHHHHHhcCceeEEEeCCCCChhhhh------hccccccccccceEEEEEccCCCCCccc
Q psy13439 37 NGLIADLVNRKTDMALTSLVINSRRES------VVDFTVPIMETGIAIVVAKRTGIISPTA 91 (261)
Q Consensus 37 ~gli~~L~~g~~Di~i~~i~it~eR~~------~vdfS~py~~~~~~~lv~~~~~~~~~~~ 91 (261)
..++.+|.+|++|+++++.... .|.+ .+.++.++...+..++++++....++.+
T Consensus 43 ~~~~~~l~~G~~D~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~lv~~~~~~i~s~~d 102 (308)
T 2x26_A 43 PQMLEALNVGSIDLGSTGDIPP-IFAQAAGADLVYVGVEPPKPKAEVILVAENSPIKTVAD 102 (308)
T ss_dssp HHHHHHHHHTSCSEEEECSHHH-HHHHHTTCCEEEEEEECCCGGGEEEEEETTCSCCSGGG
T ss_pred HHHHHHHHCCCCCEEcccCcHH-HHHHhcCCCeEEEEEecCCCCceEEEEeCCCCCCCHHH
Confidence 7899999999999998766432 2222 3456777777788999998776666555
No 60
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=87.83 E-value=0.12 Score=45.28 Aligned_cols=58 Identities=16% Similarity=0.218 Sum_probs=48.6
Q ss_pred cchhhHHHHHHHHHhcccCCCCCCchhhHHHHHHHHHHHHHHHHhhcccceeeeeccc
Q psy13439 191 SLFRTYWLVWAVLFQAAVHIDTPKGFTAKFMTNMWAMFAVVFLAIYTANLAAFMITRE 248 (261)
Q Consensus 191 ~~~~s~~~~~~~l~~qg~~~~~p~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~~ 248 (261)
++.+++|+++.++..-|.+.-.|.+..+|++...+.++++++.+...+.+++.++...
T Consensus 45 ~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 102 (336)
T 1lnq_A 45 SWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLINRE 102 (336)
T ss_dssp CSSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTTC----
T ss_pred CHHHHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999988865448999999999999999999999999999998888653
No 61
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=86.14 E-value=0.52 Score=40.76 Aligned_cols=70 Identities=7% Similarity=0.126 Sum_probs=53.9
Q ss_pred CcchhhHHHHHHHHHhcccCCCCCCchh-------hHHHHHHHHHHHHHHHHhhcccceeeeeccccccccCCccCC
Q psy13439 190 FSLFRTYWLVWAVLFQAAVHIDTPKGFT-------AKFMTNMWAMFAVVFLAIYTANLAAFMITREEFHEFTGVDDV 259 (261)
Q Consensus 190 ~~~~~s~~~~~~~l~~qg~~~~~p~s~s-------~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~Dl 259 (261)
.++.+++|+++-.+..-|.+.-.|.+.. +|+++..|.++++.+++...+.++..+...+....+..-+|+
T Consensus 200 ~s~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~~~~~i~~~~~~~~l~~~~~~~~~~ 276 (280)
T 3ukm_A 200 WNFLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCELHELKKFRKMFYVKKDK 276 (280)
T ss_dssp CCHHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHTTC-----
T ss_pred CchhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 4688999999999988887654787774 599999999999999999999999888876655555544443
No 62
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=85.55 E-value=0.91 Score=39.20 Aligned_cols=59 Identities=8% Similarity=0.181 Sum_probs=50.4
Q ss_pred CCCcchhhHHHHHHHHHhcccCCCCCCchhhHHHHHHHHHHHHHHHHhhcccceeeeec
Q psy13439 188 HRFSLFRTYWLVWAVLFQAAVHIDTPKGFTAKFMTNMWAMFAVVFLAIYTANLAAFMIT 246 (261)
Q Consensus 188 ~~~~~~~s~~~~~~~l~~qg~~~~~p~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~ 246 (261)
...++.+++|++...+..-|.+.-.|.+..+|++...+.++++.+...+.+++...+..
T Consensus 90 ~~w~~~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l~~ 148 (280)
T 3ukm_A 90 WNWDFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRITV 148 (280)
T ss_dssp CCSSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCChhcchhheeeeeeccccCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44589999999999999888765599999999999999999998888888887766544
No 63
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=84.56 E-value=0.8 Score=43.10 Aligned_cols=54 Identities=13% Similarity=0.141 Sum_probs=45.2
Q ss_pred cchhhHHHHHHHHHhcccCCCCCCchhhHHHHHHHHHHHHHHHHhhccc-ceeee
Q psy13439 191 SLFRTYWLVWAVLFQAAVHIDTPKGFTAKFMTNMWAMFAVVFLAIYTAN-LAAFM 244 (261)
Q Consensus 191 ~~~~s~~~~~~~l~~qg~~~~~p~s~s~Ril~~~w~l~~lil~~~Yta~-L~s~L 244 (261)
++.+++|+++-++..-|.+.-.|.+..+|+++..|.++++.+.+...+. +++++
T Consensus 51 ~~~~~~y~~~~t~tTvGygd~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 105 (565)
T 4gx0_A 51 SFMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLDIILPFGFVSMF 105 (565)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred chhhhhheeeeeeeeecCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999988876548999999999999999998888776666 44444
No 64
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=84.38 E-value=0.59 Score=40.51 Aligned_cols=61 Identities=16% Similarity=0.113 Sum_probs=40.7
Q ss_pred CCchhhHHHHHhcCceeEEEeC-CCCChhh--hhhcccccccc-----ccceEEEEEccCCCCCccccc
Q psy13439 33 NGKWNGLIADLVNRKTDMALTS-LVINSRR--ESVVDFTVPIM-----ETGIAIVVAKRTGIISPTAFL 93 (261)
Q Consensus 33 ~~~~~gli~~L~~g~~Di~i~~-i~it~eR--~~~vdfS~py~-----~~~~~~lv~~~~~~~~~~~~l 93 (261)
..+|++++.+|.+|++|+++.+ .+....+ .....|+.++. .....++++++...+++.+++
T Consensus 43 ~~~~~~~i~al~~G~vDi~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~~lvv~~ds~i~sl~DL~ 111 (310)
T 3n5l_A 43 APDYAGIIQGMRFDKVDIAWYGNKAAMEAVDRAHGEIFAQTVAASGAPGYWSLLIANKDSKIDSLEDML 111 (310)
T ss_dssp CSSHHHHHHHHHTTSCSEEECCHHHHHHHHHHSCEEEEEEEEETTCCSEEEEEEEEETTCSCCSHHHHH
T ss_pred CCCHHHHHHHHHcCCCCEEEECcHHHHHHHHhcCCeEEEEEeccCCCcceEEEEEEECCCCCCCHHHHh
Confidence 4578999999999999999866 3444433 33344544321 113578888887777777754
No 65
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=83.93 E-value=0.63 Score=40.70 Aligned_cols=59 Identities=20% Similarity=0.222 Sum_probs=41.9
Q ss_pred CCchhhHHHHHhcCceeEEEeC-CCCChhhh--hhccccc-------cccccceEEEEEccCCCCCccccc
Q psy13439 33 NGKWNGLIADLVNRKTDMALTS-LVINSRRE--SVVDFTV-------PIMETGIAIVVAKRTGIISPTAFL 93 (261)
Q Consensus 33 ~~~~~gli~~L~~g~~Di~i~~-i~it~eR~--~~vdfS~-------py~~~~~~~lv~~~~~~~~~~~~l 93 (261)
..+|++++.+|.+|++|+++.+ .+++..|. ....|+. |++ ...++++++..++++.+++
T Consensus 53 ~~~~~~~i~aL~~G~vDia~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~y--~~~lvv~~ds~i~sl~DL~ 121 (321)
T 3p7i_A 53 APDYAGIIQGMRFNKVDIAWYGNLSAMEAVDRANGQVFAQTVAADGSPGY--WSVLIVNKDSPINNLNDLL 121 (321)
T ss_dssp CSSHHHHHHHHHTTSCSEEECCHHHHHHHHHHSCEEEEEEEEETTCCSSB--CEEEEEETTCSCCSHHHHH
T ss_pred cCCHHHHHHHHHcCCCcEEEEChHHHHHHHHhcCCEEEEEEeccCCCcce--EEEEEEECCCCCCCHHHHH
Confidence 5679999999999999999865 55555543 3344543 333 3578889888777777764
No 66
>2nr1_A NR1 M2, M2; receptor, signal, postsynaptic membrane; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=83.50 E-value=0.3 Score=26.41 Aligned_cols=22 Identities=23% Similarity=0.755 Sum_probs=17.4
Q ss_pred CCCCcchhhHHHHHHHHHhccc
Q psy13439 187 SHRFSLFRTYWLVWAVLFQAAV 208 (261)
Q Consensus 187 ~~~~~~~~s~~~~~~~l~~qg~ 208 (261)
+..+++..++||+||.++.-|.
T Consensus 4 ~~~~~l~aa~wF~WGvllnsgi 25 (27)
T 2nr1_A 4 GDALTLSSAMWFSWGVLLNSGI 25 (27)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHH
T ss_pred ccceehhhhHHHhhHhheeccc
Confidence 3456788999999999997663
No 67
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp}
Probab=82.30 E-value=0.84 Score=39.66 Aligned_cols=59 Identities=15% Similarity=0.159 Sum_probs=42.1
Q ss_pred CCchhhHHHHHhcCceeEEEeCCCCCh-hhhhhccccccc--cccceEEEEEccCCCCCccc
Q psy13439 33 NGKWNGLIADLVNRKTDMALTSLVINS-RRESVVDFTVPI--METGIAIVVAKRTGIISPTA 91 (261)
Q Consensus 33 ~~~~~gli~~L~~g~~Di~i~~i~it~-eR~~~vdfS~py--~~~~~~~lv~~~~~~~~~~~ 91 (261)
..+|..++.+|.+|++|+++.+..... .|.+..++.... ...+..++++++..++++.+
T Consensus 89 ~~~~~~~~~al~~G~~D~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~ivv~~~s~I~s~~D 150 (341)
T 3un6_A 89 FNNWPDLMDALNSGRIDGASTLIELAMKSKQKGSNIKAVALGHHEGNVIMGQKGMHLNEFNN 150 (341)
T ss_dssp CSSHHHHHHHHHTTSSSEEEEEHHHHHHHHHTTCCCEEEEESCEECEEEEESTTCCGGGCCS
T ss_pred cCCHHHHHHHHHcCCCCEEecchHHHHHHHHCCCCeEEEeecCCCceEEEEcCCCCCCCHHH
Confidence 445899999999999999998886654 355555554322 24677888888766666555
No 68
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Probab=74.05 E-value=2.2 Score=36.54 Aligned_cols=57 Identities=12% Similarity=0.003 Sum_probs=37.7
Q ss_pred chhhHHHHHhcCceeEEEeCCCC-Chhhhhh----ccccccccccceEEEEEccCCCCCccc
Q psy13439 35 KWNGLIADLVNRKTDMALTSLVI-NSRRESV----VDFTVPIMETGIAIVVAKRTGIISPTA 91 (261)
Q Consensus 35 ~~~gli~~L~~g~~Di~i~~i~i-t~eR~~~----vdfS~py~~~~~~~lv~~~~~~~~~~~ 91 (261)
++..++.+|.+|++|+++.+... ...+.+. +-.+.++...+..++++++..+.++.+
T Consensus 67 ~~~~~~~al~~G~~D~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~lvv~~~s~I~s~~D 128 (324)
T 3ksx_A 67 AGPQLLEALNVGSIDLGGAGDIPPLFAQAAGADLLYVGWVPPTPKAETILVPSKSALRTVAD 128 (324)
T ss_dssp SHHHHHHHHHTTSCSEEEEESHHHHHHHHTTCCEEEEEEECCCGGGEEEEEETTCSCCSGGG
T ss_pred CHHHHHHHHHCCCCCEEeecCHHHHHHHhcCCCEEEEEEecCCCCceEEEEeCCCCCCCHHH
Confidence 56789999999999998765432 1222222 222334444578899998877777666
No 69
>4ddd_A Immunogenic protein; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, immune system; 1.90A {Ehrlichia chaffeensis}
Probab=72.81 E-value=2.9 Score=36.37 Aligned_cols=58 Identities=10% Similarity=0.051 Sum_probs=42.4
Q ss_pred chhhHHHHHhcCceeEEEeCCCCChh-h-----------hhhccccccccccceEEEEEccCCCCCcccc
Q psy13439 35 KWNGLIADLVNRKTDMALTSLVINSR-R-----------ESVVDFTVPIMETGIAIVVAKRTGIISPTAF 92 (261)
Q Consensus 35 ~~~gli~~L~~g~~Di~i~~i~it~e-R-----------~~~vdfS~py~~~~~~~lv~~~~~~~~~~~~ 92 (261)
...+.+..|.+|++|+++++...... + .+.+.+..+++.....++++++...+++.++
T Consensus 75 g~~~~i~~l~~g~~D~~~~~~~~~~~a~~g~~~f~~~~~~~d~~~v~~~~~~~~~lvv~~ds~i~sl~DL 144 (327)
T 4ddd_A 75 GSVYNLNSIRYSNMDISIVQSDLEYYAYNGLGFYEKMLPMDNLRMLASLHKEYLTIVVKKSSNISVIDDI 144 (327)
T ss_dssp CHHHHHHHHHTTSCSEEEEEHHHHHHHHHTCGGGTTSCCCTTEEEEEEEEEEEEEEEEETTSSCCSGGGG
T ss_pred cHHHHHHHHHcCCCcEEEECcHHHHHHHhCcCcccccCCCcchhehhccCCccEEEEEECCCCCCCHHHh
Confidence 34678899999999999876653221 1 2334455677888899999998888787775
No 70
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=72.21 E-value=4.1 Score=36.08 Aligned_cols=62 Identities=2% Similarity=-0.082 Sum_probs=54.0
Q ss_pred CCcchhhHHHHHHHHHhcccCCCCCC--chhhHHHHHHHHHHHHHHHHhhcccceeeeeccccc
Q psy13439 189 RFSLFRTYWLVWAVLFQAAVHIDTPK--GFTAKFMTNMWAMFAVVFLAIYTANLAAFMITREEF 250 (261)
Q Consensus 189 ~~~~~~s~~~~~~~l~~qg~~~~~p~--s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~~~~ 250 (261)
..++.+++|+++..+..-|.+...|. +..+|+++..=.+.++++.+.-++-+.|-++.|+.+
T Consensus 89 ~~sf~~af~fSv~T~TTvGYGd~~p~~~~~~g~~l~~~~~l~G~~l~a~~~giv~ak~srp~~r 152 (340)
T 3sya_A 89 LNGFVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKISQPKKR 152 (340)
T ss_dssp CCSTTHHHHHHHHHHSCCCCSSSCBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGG
T ss_pred ccCHHHHHhhhheeeeeecCCCccCcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhc
Confidence 34788999999999998888754675 688999999999999999999999999999988765
No 71
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=66.96 E-value=3.7 Score=35.89 Aligned_cols=55 Identities=9% Similarity=0.195 Sum_probs=44.7
Q ss_pred cchhhHHHHHHHHHhcccCCCCCCchhhH------HHHHHHHHHHHHHHHhhcccceeeee
Q psy13439 191 SLFRTYWLVWAVLFQAAVHIDTPKGFTAK------FMTNMWAMFAVVFLAIYTANLAAFMI 245 (261)
Q Consensus 191 ~~~~s~~~~~~~l~~qg~~~~~p~s~s~R------il~~~w~l~~lil~~~Yta~L~s~Lt 245 (261)
++.+++|+++-.+..-|.+.-.|.+..+| ++...|.++++.+.+.-.+.+...+.
T Consensus 224 ~~~da~y~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~~~~~i~~~~~ 284 (309)
T 3um7_A 224 SKLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWLR 284 (309)
T ss_dssp CHHHHHHHHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHhheeccccCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999998888765488888877 58889999999888877777666654
No 72
>1zbm_A Hypothetical protein AF1704; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.30A {Archaeoglobus fulgidus} SCOP: c.94.1.1
Probab=66.36 E-value=3.1 Score=34.66 Aligned_cols=54 Identities=13% Similarity=-0.048 Sum_probs=33.0
Q ss_pred eeCCchhhHHHHHhcCceeEEEeCCCCChhhhhhcccc--ccccc-cceEEEEEccC
Q psy13439 31 VENGKWNGLIADLVNRKTDMALTSLVINSRRESVVDFT--VPIME-TGIAIVVAKRT 84 (261)
Q Consensus 31 ~~~~~~~gli~~L~~g~~Di~i~~i~it~eR~~~vdfS--~py~~-~~~~~lv~~~~ 84 (261)
+..++++.++.+|.+|++|+++.+......+.+.+++. .++.. ....++++++.
T Consensus 42 ~~~~~~~~~~~~l~~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlv~~~~ 98 (280)
T 1zbm_A 42 HVIEDIETLNRKAFNAEYEVTAISAHAYALLDDKYRILSAGASVGDGYGPVVVAKSE 98 (280)
T ss_dssp EEECCHHHHHHHGGGTCCSEEEEEHHHHTTSTTTEEECSSCCEEESSCCCEEEESSC
T ss_pred EEeCCHHHHHHHHHcCCCCEEEECHHHHHHhcCCCcEEeeccccCCCeeEEEEEcCc
Confidence 34457899999999999999986543333333444443 23333 33455666653
No 73
>1atg_A MODA, periplasmic molybdate-binding protein; tungstate, ABC transporter; 1.20A {Azotobacter vinelandii} SCOP: c.94.1.1
Probab=65.92 E-value=8.9 Score=30.00 Aligned_cols=61 Identities=8% Similarity=-0.037 Sum_probs=39.2
Q ss_pred chhhHHHHHhcCc-eeEEEeCCCCChhhhhhcc-----ccccccccceEEEEEccCCCC-CcccccCC
Q psy13439 35 KWNGLIADLVNRK-TDMALTSLVINSRRESVVD-----FTVPIMETGIAIVVAKRTGII-SPTAFLEP 95 (261)
Q Consensus 35 ~~~gli~~L~~g~-~Di~i~~i~it~eR~~~vd-----fS~py~~~~~~~lv~~~~~~~-~~~~~l~p 95 (261)
+-..++..|.+|+ +|+++.+-....++...-. -..|+..+...++++++.... ++.++.+|
T Consensus 35 ~s~~l~~~l~~g~~~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlv~~~~~~~~~~~~dL~~~ 102 (231)
T 1atg_A 35 SSGPVYAQIVNGAPYNVFFSADEKSPEKLDNQGFALPGSRFTYAIGKLVLWSAKPGLVDNQGKVLAGN 102 (231)
T ss_dssp CHHHHHHHHHTTCCCSEEECSSSHHHHHHHHTTCBCTTCCEEEEECCEEEEESSTTTSCTTSGGGGSS
T ss_pred CcHHHHHHHHcCCCCCEEEeCChhHHHHHHhcCCCcCCceeEeeeeeEEEEEcCCCCCCcchhhhccC
Confidence 3467889999998 9999864332222221112 246888899999998765433 46666554
No 74
>2y7p_A LYSR-type regulatory protein; transcription regulator, DNA-binding, transcription, transcr factor, transcription regulation; HET: SAL PEU; 1.85A {Burkholderia SP} PDB: 2y7k_A* 2y84_A 2y7w_A 2y7r_A
Probab=65.14 E-value=11 Score=29.64 Aligned_cols=52 Identities=13% Similarity=0.009 Sum_probs=37.3
Q ss_pred eeCCchhhHHHHHhcCceeEEEeCCCCChhhhhhccccccccccceEEEEEccCCC
Q psy13439 31 VENGKWNGLIADLVNRKTDMALTSLVINSRRESVVDFTVPIMETGIAIVVAKRTGI 86 (261)
Q Consensus 31 ~~~~~~~gli~~L~~g~~Di~i~~i~it~eR~~~vdfS~py~~~~~~~lv~~~~~~ 86 (261)
...++.+.++.+|.+|++|+++..... ....+.+ .|+......++++++...
T Consensus 41 l~~~~~~~l~~~L~~g~iDl~i~~~~~---~~~~l~~-~~l~~~~~~~v~~~~hpl 92 (218)
T 2y7p_A 41 TLRPNAGNLKEDMESGAVDLALGLLPE---LQTGFFQ-RRLFRHRYVCMFRKDHPS 92 (218)
T ss_dssp EECCCTTTHHHHHHHTSSCEEEECCTT---CCTTEEE-EEEEEECEEEEEETTCSS
T ss_pred EEeCCcccHHHHHhCCCceEEEecCCC---CCcceeE-EEeeeccEEEEEcCCCCC
Confidence 345666899999999999999964322 1223433 578899999999887543
No 75
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=62.27 E-value=6.2 Score=34.98 Aligned_cols=62 Identities=8% Similarity=0.032 Sum_probs=53.4
Q ss_pred CCcchhhHHHHHHHHHhcccCCCC--CCchhhHHHHHHHHHHHHHHHHhhcccceeeeeccccc
Q psy13439 189 RFSLFRTYWLVWAVLFQAAVHIDT--PKGFTAKFMTNMWAMFAVVFLAIYTANLAAFMITREEF 250 (261)
Q Consensus 189 ~~~~~~s~~~~~~~l~~qg~~~~~--p~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~~~~ 250 (261)
..+|.+++|+++..+..-|.+... |.+..+++++..=.+.++++.+.-++-+.|-++.|+.+
T Consensus 92 ~~sf~~af~fSv~T~TTvGYGd~~p~~~~~~~~~l~~~~~l~G~~l~a~~~giv~ak~srp~~r 155 (343)
T 3spc_A 92 VNGFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIGAIMAKMARPKKR 155 (343)
T ss_dssp CCSHHHHHHHHHHHHSCCCCSSSEECSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCC
T ss_pred cCCHHHHhheeeeeeEeecCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence 347899999999999988886533 46899999999999999999999999999999988665
No 76
>2x7q_A Ca3427, possible thiamine biosynthesis enzyme; unknown function; 2.00A {Candida albicans} PDB: 2x7p_A
Probab=62.25 E-value=6 Score=33.78 Aligned_cols=55 Identities=11% Similarity=0.096 Sum_probs=38.7
Q ss_pred hHHHHHhcCceeEEEeCCC-CChhhhhhcc-cc--ccccccc--eEEEEEccC-CCCCcccc
Q psy13439 38 GLIADLVNRKTDMALTSLV-INSRRESVVD-FT--VPIMETG--IAIVVAKRT-GIISPTAF 92 (261)
Q Consensus 38 gli~~L~~g~~Di~i~~i~-it~eR~~~vd-fS--~py~~~~--~~~lv~~~~-~~~~~~~~ 92 (261)
.++.+|.+|++|+++++.. +...|.+..+ +. .++...+ ..+++++++ .+.++.++
T Consensus 57 ~~~~al~~G~~D~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~~~~i~v~~ds~~i~s~~DL 118 (321)
T 2x7q_A 57 RLINLLNSNEVDIAIGLTEAFIADIAKGNENIHVLDTYVKSPLLWAVSTGSNRDDVTDAKQL 118 (321)
T ss_dssp HHHHHHHTTSCSEEEEEHHHHHHHHHTTCTTEEEEEEEECSCCEEEEEEESSCTTCSSGGGC
T ss_pred HHHHHHHcCCccEEecCcHHHHHHHHCCCCcEEEEEEecCCCcceEEEECCCCCCCCChHHc
Confidence 3799999999999998774 4455655554 43 4455555 367888876 77777775
No 77
>1us5_A Putative GLUR0 ligand binding core; receptor, membrane protein, glutamate receptor, L-glutamate; HET: GLU; 1.5A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 1us4_A*
Probab=56.42 E-value=9.4 Score=32.08 Aligned_cols=59 Identities=15% Similarity=0.096 Sum_probs=39.2
Q ss_pred chhhHHHHHhcCceeEEEeCCCCCh-hh------------hhhccccccccccceEEEEEccCCCCCccccc
Q psy13439 35 KWNGLIADLVNRKTDMALTSLVINS-RR------------ESVVDFTVPIMETGIAIVVAKRTGIISPTAFL 93 (261)
Q Consensus 35 ~~~gli~~L~~g~~Di~i~~i~it~-eR------------~~~vdfS~py~~~~~~~lv~~~~~~~~~~~~l 93 (261)
....++.+|.+|++|+++.+..... .+ .+.+.+..+++.....++++++....++.++.
T Consensus 59 ~~~~~~~~l~~g~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~lvv~~~~~i~sl~dL~ 130 (314)
T 1us5_A 59 GSVANINAINAGEFEMALAQNDIAYYAYQGCCIPAFEGKPVKTIRALAALYPEVVHVVARKDAGIRTVADLK 130 (314)
T ss_dssp CHHHHHHHHHTTSCSEEEEEHHHHHHHHHTCSSTTTTTCCCTTEEEEEEEEEEEEEEEEETTSSCSSGGGGT
T ss_pred cHHHHHHHHHcCCCcEEEEccHhHHHHhcCCCCCCCCCCCccchhehhhcCcceEEEEEECCCCCCcHHHhC
Confidence 4567889999999999886543211 11 12333334677778888998877776776653
No 78
>1twy_A ABC transporter, periplasmic substrate-binding PR; nysgxrc target, structural genomics, protei structure initiative, PSI; 1.65A {Vibrio cholerae o1 biovar eltor} SCOP: c.94.1.1
Probab=53.08 E-value=21 Score=28.95 Aligned_cols=53 Identities=23% Similarity=0.233 Sum_probs=36.2
Q ss_pred eCCchhhHHHHHhcCceeEEEeCCCCChhhh-hhccccccccccceEEEEEccCC
Q psy13439 32 ENGKWNGLIADLVNRKTDMALTSLVINSRRE-SVVDFTVPIMETGIAIVVAKRTG 85 (261)
Q Consensus 32 ~~~~~~gli~~L~~g~~Di~i~~i~it~eR~-~~vdfS~py~~~~~~~lv~~~~~ 85 (261)
..+....++..|.+|++|+++.......++. +.+. ..++......++++++..
T Consensus 61 ~~~~~~~~~~~l~~g~~Di~i~~~~~~~~~~~~~~~-~~~l~~~~~~~v~~~~~p 114 (290)
T 1twy_A 61 QGVGSTAGISLLKKGVADIAMTSRYLTESEAQNTLH-TFTLAFDGLAIVVNQANP 114 (290)
T ss_dssp EESCHHHHHHHHHTTSCSEEEESSCCCTTTCCTTCE-EEEEEEEEEEEEECTTCC
T ss_pred EecCcHHHHHHHhcCCCcEEEecCCCchhhhhcCce-EEEEEeeeEEEEECCCCC
Confidence 4455678899999999999997654433211 2222 367888888888877653
No 79
>4ab5_A Transcriptional regulator, LYSR family; transcription factors; 2.51A {Neisseria meningitidis serogroup B} PDB: 4ab6_A
Probab=48.28 E-value=18 Score=27.75 Aligned_cols=49 Identities=14% Similarity=0.180 Sum_probs=35.4
Q ss_pred eCCchhhHHHHHhcCceeEEEeCCCCChhhhhhccccccccccceEEEEEccC
Q psy13439 32 ENGKWNGLIADLVNRKTDMALTSLVINSRRESVVDFTVPIMETGIAIVVAKRT 84 (261)
Q Consensus 32 ~~~~~~gli~~L~~g~~Di~i~~i~it~eR~~~vdfS~py~~~~~~~lv~~~~ 84 (261)
..+..+.++..|.+|++|+++.......+ .+. ..++......+++++..
T Consensus 42 ~~~~~~~~~~~l~~g~~Di~i~~~~~~~~---~~~-~~~l~~~~~~~v~~~~~ 90 (222)
T 4ab5_A 42 VSGFQADPVGLLLQHRADLAIVSEAEKQN---GIS-FQPLFAYEMVGICAPDH 90 (222)
T ss_dssp ECCCCSCTHHHHHTTSCSEEEESCCCCCT---TEE-EEEEEEEEEEEEECTTS
T ss_pred ecCCHHHHHHHHHcCCcCEEEecCCCCcC---CeE-EEEeecCcEEEEecCCC
Confidence 45556789999999999999975443222 222 46778888888888765
No 80
>3oxn_A Putative transcriptional regulator, LYSR family; structural genomics, PSI-2, protein structure initiative; 2.70A {Vibrio parahaemolyticus}
Probab=47.62 E-value=32 Score=27.01 Aligned_cols=51 Identities=12% Similarity=0.088 Sum_probs=36.7
Q ss_pred eeCCchhhHHHHHhcCceeEEEeCCCCChhhhhhccccccccccceEEEEEccCC
Q psy13439 31 VENGKWNGLIADLVNRKTDMALTSLVINSRRESVVDFTVPIMETGIAIVVAKRTG 85 (261)
Q Consensus 31 ~~~~~~~gli~~L~~g~~Di~i~~i~it~eR~~~vdfS~py~~~~~~~lv~~~~~ 85 (261)
...++...++.+|.+|++|+++..... ....+. +.++......+++++...
T Consensus 52 ~~~~~~~~~~~~l~~g~~Dl~i~~~~~---~~~~~~-~~~l~~~~~~~v~~~~hp 102 (241)
T 3oxn_A 52 FLPLQHDRLSDQLTYEGADLAICRPTG---PVEPLR-SEILGRVGVLCLLSKQHP 102 (241)
T ss_dssp EEECCGGGHHHHHHTSCCSEEEECCSS---CCTTEE-EEEEECCCEEEEEETTSG
T ss_pred EEECCcccHHHHHHcCCCCEEEecCCC---CCccce-eEEeecccEEEEEeCCCC
Confidence 345566789999999999999975433 222233 367888899999987753
No 81
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=45.85 E-value=10 Score=31.96 Aligned_cols=59 Identities=12% Similarity=0.081 Sum_probs=41.6
Q ss_pred CCcchhhHHHHHHHHHhcccC-CC-CCCc----hhhHHHHHHHHHHHHHHHHhhcccceeeeecc
Q psy13439 189 RFSLFRTYWLVWAVLFQAAVH-ID-TPKG----FTAKFMTNMWAMFAVVFLAIYTANLAAFMITR 247 (261)
Q Consensus 189 ~~~~~~s~~~~~~~l~~qg~~-~~-~p~s----~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~ 247 (261)
.-++.+++|..+.++...|.+ .- .|.. ++++++.+...+.++++.+.++|-+++.+...
T Consensus 178 F~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~~ 242 (285)
T 3rvy_A 178 FGTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVDAMAIL 242 (285)
T ss_dssp HSSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347889999999999877654 20 1332 34467776667789999999999999888753
No 82
>3ho7_A OXYR; beta-alpha-barrels, DNA-binding, transcription, transcriptio regulation; 1.58A {Porphyromonas gingivalis}
Probab=42.04 E-value=26 Score=27.12 Aligned_cols=49 Identities=12% Similarity=0.089 Sum_probs=35.8
Q ss_pred eCCchhhHHHHHhcCceeEEEeCCCCChhhhhhccccccccccceEEEEEccC
Q psy13439 32 ENGKWNGLIADLVNRKTDMALTSLVINSRRESVVDFTVPIMETGIAIVVAKRT 84 (261)
Q Consensus 32 ~~~~~~gli~~L~~g~~Di~i~~i~it~eR~~~vdfS~py~~~~~~~lv~~~~ 84 (261)
..+....+...|.+|++|+++....... ..+. +.++......+++++..
T Consensus 45 ~~~~~~~~~~~l~~g~~Dl~i~~~~~~~---~~l~-~~~l~~~~~~~v~~~~h 93 (232)
T 3ho7_A 45 SEMQTSRCLASLLSGEIDMAIIASKAET---EGLE-DDLLYYEEFLGYVSRCE 93 (232)
T ss_dssp EECCHHHHHHHHHHTSCSEEEESSCCCC---TTEE-EEEEEEEEEEEEECTTS
T ss_pred EeCCHHHHHHHHHcCCCCEEEEcCCCCC---CCeE-EEEecccCEEEEEcCCC
Confidence 4556688999999999999997654433 2222 46778888888887764
No 83
>1i6a_A OXYR, hydrogen peroxide-inducible genes activator; OXYR regulatory domain, oxidized form, transcription; 2.30A {Escherichia coli} SCOP: c.94.1.1 PDB: 1i69_A
Probab=41.31 E-value=28 Score=26.96 Aligned_cols=49 Identities=18% Similarity=0.302 Sum_probs=34.4
Q ss_pred eCCchhhHHHHHhcCceeEEEeCCCCChhhhhhccccccccccceEEEEEccC
Q psy13439 32 ENGKWNGLIADLVNRKTDMALTSLVINSRRESVVDFTVPIMETGIAIVVAKRT 84 (261)
Q Consensus 32 ~~~~~~gli~~L~~g~~Di~i~~i~it~eR~~~vdfS~py~~~~~~~lv~~~~ 84 (261)
..+..+.++..|.+|++|+++..... ....+. +.++......++++++.
T Consensus 39 ~~~~~~~~~~~l~~g~~Dl~i~~~~~---~~~~l~-~~~l~~~~~~~v~~~~h 87 (219)
T 1i6a_A 39 HEAQTHQLLAQLDSGKLDAVILALVK---ESEAFI-EVPLFDEPMLLAIYEDH 87 (219)
T ss_dssp EECCHHHHHHHHHHTSCSEEEEECCG---GGTTSE-EEEEEEEEEEEEEETTS
T ss_pred EECChHHHHHHHHcCCeeEEEecCCC---CCCCcc-eeeeecccEEEEEcCCC
Confidence 44566889999999999999864322 122233 35788888888888764
No 84
>3onm_A Transcriptional regulator LRHA; LYSR, ROVM, transcription factor, virulence factor; 2.40A {Yersinia pseudotuberculosis}
Probab=41.15 E-value=43 Score=26.23 Aligned_cols=50 Identities=12% Similarity=0.037 Sum_probs=36.6
Q ss_pred eeCCchhhHHHHHhcCceeEEEeCCCCChhhhhhccccccccccceEEEEEccCCC
Q psy13439 31 VENGKWNGLIADLVNRKTDMALTSLVINSRRESVVDFTVPIMETGIAIVVAKRTGI 86 (261)
Q Consensus 31 ~~~~~~~gli~~L~~g~~Di~i~~i~it~eR~~~vdfS~py~~~~~~~lv~~~~~~ 86 (261)
+..+....++..|.+|++|+++...... . --+.++......+++++....
T Consensus 60 i~~~~~~~~~~~L~~g~~Dl~i~~~~~~-----~-~~~~~l~~~~~~~v~~~~~~l 109 (238)
T 3onm_A 60 VRVKRSPFIADMLSSGEVDLAITTAKVD-----S-HPHVILRTSPTLWYCSVDYQF 109 (238)
T ss_dssp EEECCHHHHHHHHHHTSCSEEEECSCC------C-CCEEEEEEECEEEEEETTCCC
T ss_pred EEECCHHHHHHHHHCCCccEEEEecCCC-----C-cceEEeecCCEEEEEcCCCCc
Confidence 3456678899999999999999754321 1 235678888999999877543
No 85
>3jv9_A OXYR, transcriptional regulator, LYSR family; LYSR-type transcriptional regulator, LTTR, redox, structural genomics, OPPF; 2.39A {Neisseria meningitidis}
Probab=40.07 E-value=24 Score=26.87 Aligned_cols=49 Identities=16% Similarity=0.202 Sum_probs=35.4
Q ss_pred eCCchhhHHHHHhcCceeEEEeCCCCChhhhhhccccccccccceEEEEEccC
Q psy13439 32 ENGKWNGLIADLVNRKTDMALTSLVINSRRESVVDFTVPIMETGIAIVVAKRT 84 (261)
Q Consensus 32 ~~~~~~gli~~L~~g~~Di~i~~i~it~eR~~~vdfS~py~~~~~~~lv~~~~ 84 (261)
..+....+..+|.+|++|+++....... ..+. ..++......+++++..
T Consensus 38 ~~~~~~~~~~~l~~g~~Dl~i~~~~~~~---~~~~-~~~l~~~~~~~v~~~~~ 86 (219)
T 3jv9_A 38 EENYTHTLTESLKRGDVDAIIVAEPFQE---PGIV-TEPLYDEPFFVIVPKGH 86 (219)
T ss_dssp EEECHHHHHHHHHHTSSSEEEEESSCCC---TTEE-EEEEEEEEEEEEEETTC
T ss_pred EeCCcHHHHHHHHcCCCCEEEEcCCCCC---CCee-EEEeeeceEEEEEeCCC
Confidence 4455678999999999999997654332 2222 46778889999998764
No 86
>1ixh_A Phosphate-binding protein; phosphate transport, ultra high resolution, phosphate bindin protein; 0.98A {Escherichia coli} SCOP: c.94.1.1 PDB: 2abh_A 1a54_A* 1a55_A 1ixi_A 1quk_A 1ixg_A 1oib_A 1pbp_A 1qul_A 1qui_A 1quj_A 1a40_A 2z22_X
Probab=39.90 E-value=30 Score=29.65 Aligned_cols=49 Identities=10% Similarity=0.239 Sum_probs=38.2
Q ss_pred hhhHHHHHhcCceeEEEeCCCCChhhhhhccc-cccccccceEEEEEccC
Q psy13439 36 WNGLIADLVNRKTDMALTSLVINSRRESVVDF-TVPIMETGIAIVVAKRT 84 (261)
Q Consensus 36 ~~gli~~L~~g~~Di~i~~i~it~eR~~~vdf-S~py~~~~~~~lv~~~~ 84 (261)
-.+.+.+|.+|++|+++.+-.++++..+..++ ..|+..++++++++.+.
T Consensus 38 S~~~~~~l~~g~~Di~~~~~~~~~~e~~~~~l~~~~~~~d~lvvvv~~~~ 87 (321)
T 1ixh_A 38 SSGGVKQIIANTVDFGASDAPLSDEKLAQEGLFQFPTVIGGVVLAVNIPG 87 (321)
T ss_dssp HHHHHHHHHTTCSSEEEESSCCCHHHHHHHTEEEEEEEEEEEEEEECCTT
T ss_pred CHHHHHHHHcCCCcEEecccCCChhhHhhCCCEEeeeeeeeEEEEEeCCC
Confidence 36789999999999999998888776432222 46888999999998764
No 87
>3cvg_A Putative metal binding protein; PSI-II, NYSGXRC, periplasmic, structural GENO protein structure initiative; 1.97A {Coccidioides immitis}
Probab=36.32 E-value=30 Score=29.10 Aligned_cols=55 Identities=9% Similarity=-0.020 Sum_probs=35.9
Q ss_pred eeCCchhhHHHHHhcCceeEEEeCCCCChhhh--hhccc-cc-cccccceEEEEEccCC
Q psy13439 31 VENGKWNGLIADLVNRKTDMALTSLVINSRRE--SVVDF-TV-PIMETGIAIVVAKRTG 85 (261)
Q Consensus 31 ~~~~~~~gli~~L~~g~~Di~i~~i~it~eR~--~~vdf-S~-py~~~~~~~lv~~~~~ 85 (261)
+..+.-..++.+|.+|++|+++..-....+.. +.+.+ .. ++....+.+++++..+
T Consensus 58 l~~~~s~~l~~~l~~G~~Dl~i~~~~~~~~~l~~~~~~~~~~~~l~~d~lvlv~~~~hp 116 (294)
T 3cvg_A 58 WYKSDTTVTINYLKDGIVDVGITYSPVAERISIKHGISESPSYYAFRDHFMLIGPPSNP 116 (294)
T ss_dssp EEECCHHHHHHHHHTTSCSEEEESCHHHHHHHHHTTSBCSSCEEEEEEEEEEEECTTCT
T ss_pred EEeCCHHHHHHHHHcCCCcEEEEcCchhhhHHHhCCcccceeeeEEeccEEEEecCCCh
Confidence 34556678999999999999986432222111 11122 24 7888888898887654
No 88
>4gd5_A Phosphate ABC transporter, phosphate-binding PROT; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.70A {Clostridium perfringens}
Probab=34.89 E-value=57 Score=26.98 Aligned_cols=49 Identities=16% Similarity=0.197 Sum_probs=37.9
Q ss_pred hhHHHHHhcCceeEEEeCCCCChhhhhhccccccccccceEEEEEccCC
Q psy13439 37 NGLIADLVNRKTDMALTSLVINSRRESVVDFTVPIMETGIAIVVAKRTG 85 (261)
Q Consensus 37 ~gli~~L~~g~~Di~i~~i~it~eR~~~vdfS~py~~~~~~~lv~~~~~ 85 (261)
.+.+.++.+|.+|++.++-.++.+..+.---..|+..++..+++.++..
T Consensus 75 g~g~~~~~~G~~di~~as~~~~~~e~~~~~~~~~ia~d~~~vivn~~n~ 123 (279)
T 4gd5_A 75 SAGIKNAMEGVSEIGMASRDLKGEEKQAGLKEVEIAYDGIALITHKNNP 123 (279)
T ss_dssp HHHHHHHHHTSSSEEEESSCCCHHHHTTCCEEEEEEEEEEEEEEETTCS
T ss_pred HHHHHHHHcCCCcEEEecchhhhhHhhcCceEEEEEeeceeeeeccCCc
Confidence 4678889999999999988888776554333467888899999987653
No 89
>2hxr_A HTH-type transcriptional regulator CYNR; CYNR transcriptional regulator LYSR struc genomics, PSI-2, protein structure initiative; 2.05A {Escherichia coli} PDB: 3hfu_A
Probab=34.89 E-value=42 Score=26.15 Aligned_cols=49 Identities=14% Similarity=0.308 Sum_probs=34.2
Q ss_pred eCCchhhHHHHHhcCceeEEEeCCCCChhhhhhccccccccccceEEEEEccC
Q psy13439 32 ENGKWNGLIADLVNRKTDMALTSLVINSRRESVVDFTVPIMETGIAIVVAKRT 84 (261)
Q Consensus 32 ~~~~~~gli~~L~~g~~Di~i~~i~it~eR~~~vdfS~py~~~~~~~lv~~~~ 84 (261)
..++.+.++..|.+|++|+++...... ...+. +.++......++++++.
T Consensus 64 ~~~~~~~~~~~l~~g~~Dl~i~~~~~~---~~~l~-~~~l~~~~~~~v~~~~h 112 (238)
T 2hxr_A 64 QEMSQEKIEDMLCRDELDVGIAFAPVH---SPELE-AIPLLTESLALVVAQHH 112 (238)
T ss_dssp EECCHHHHHHHHHTTSCSEEEEESSCC---CTTEE-EEEEEEEEEEEEEETTS
T ss_pred EECCHHHHHHHHHcCCCcEEEEcCCCC---cccce-eeeeccCcEEEEEcCCC
Confidence 455567889999999999999643322 12222 35788888888888764
No 90
>2ql3_A Probable transcriptional regulator, LYSR family P; APC7314, rhodococcus RHA1, structural genomics, PSI-2; HET: MSE; 2.05A {Rhodococcus SP}
Probab=34.86 E-value=50 Score=24.98 Aligned_cols=49 Identities=22% Similarity=0.209 Sum_probs=34.0
Q ss_pred eCCchhhHHHHHhcCceeEEEeCCCCChhhhhhccccccccccceEEEEEccC
Q psy13439 32 ENGKWNGLIADLVNRKTDMALTSLVINSRRESVVDFTVPIMETGIAIVVAKRT 84 (261)
Q Consensus 32 ~~~~~~gli~~L~~g~~Di~i~~i~it~eR~~~vdfS~py~~~~~~~lv~~~~ 84 (261)
..++...+..+|.+|++|+++....... ..+. +.++......++++++.
T Consensus 39 ~~~~~~~l~~~l~~g~~Dl~i~~~~~~~---~~l~-~~~l~~~~~~~v~~~~h 87 (209)
T 2ql3_A 39 REDTQNRLRTQLEGGELDVAIVYDLDLS---PEWQ-TVPLMTREPMVVLGAEH 87 (209)
T ss_dssp EECCHHHHHHHHHTTSCSEEEEESSSCC---TTEE-EEEEEEECCEEEEETTC
T ss_pred EECcHHHHHHHHHcCCccEEEEecCCCC---CCce-EEEeecCceEEEEeCCC
Confidence 4455678999999999999986432211 2222 35788888888888754
No 91
>2ozz_A Hypothetical protein YHFZ; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.30A {Shigella flexneri 2A} SCOP: c.94.1.1
Probab=32.36 E-value=39 Score=27.95 Aligned_cols=53 Identities=9% Similarity=0.105 Sum_probs=35.3
Q ss_pred eCCchhhHHHHHhcCceeEEEeCCCCChhh-h---hhccccc---cccccceEEEEEccC
Q psy13439 32 ENGKWNGLIADLVNRKTDMALTSLVINSRR-E---SVVDFTV---PIMETGIAIVVAKRT 84 (261)
Q Consensus 32 ~~~~~~gli~~L~~g~~Di~i~~i~it~eR-~---~~vdfS~---py~~~~~~~lv~~~~ 84 (261)
.+.+...++.+|.+|++|.++-...-..++ . +...+.. +.-.+...+++++++
T Consensus 140 ve~~y~~~i~~L~~G~IDA~Iwn~d~~~a~~~~~l~~~~l~~~~~~~~~~eavI~v~k~n 199 (231)
T 2ozz_A 140 VDLSYHESLQRIVKGDVDAVIWNVVAENELTMLGLEATPLTDDPRFLQATEAVVLTRVDD 199 (231)
T ss_dssp EECCHHHHHHHHHHTSCCEEEEEC-CHHHHHHTTEEEEECCSCHHHHHTTCEEEEEETTC
T ss_pred EECCHHHHHHHHHcCCccEEEEcCcchhhhcCCCcceeccccccccccCCceEEEEECCC
Confidence 345668999999999999999755444444 1 2344444 445567777788774
No 92
>1pc3_A Phosphate-binding protein 1; phosphate transport receptor, immonodominant antigen, mycoba tuberculosis, ION-dipole interactions; 2.16A {Mycobacterium tuberculosis} SCOP: c.94.1.1
Probab=32.10 E-value=58 Score=28.31 Aligned_cols=49 Identities=4% Similarity=0.016 Sum_probs=37.9
Q ss_pred hhhHHHHHhcCceeEEEeCCCCChhhhhhc-c-ccccccccceEEEEEccC
Q psy13439 36 WNGLIADLVNRKTDMALTSLVINSRRESVV-D-FTVPIMETGIAIVVAKRT 84 (261)
Q Consensus 36 ~~gli~~L~~g~~Di~i~~i~it~eR~~~v-d-fS~py~~~~~~~lv~~~~ 84 (261)
-.+.+.+|.+|++|+++.+-.++.+..+.. + ...|+..++++++++.+.
T Consensus 64 S~~g~~~l~~g~~Di~~~~~~~~~~e~~~~~~l~~~pi~~d~lvvvvn~~~ 114 (350)
T 1pc3_A 64 SGAGIAQAAAGTVNIGASDAYLSEGDMAAHKGLMNIALAISAQQVNYNLPG 114 (350)
T ss_dssp HHHHHHHHHTTSCSEEEESSCCCHHHHHHSTTEEEEEEEEEEEEEEECCTT
T ss_pred CHHHHHHHHcCCCcEEeccCCCCHHHHHhcCCCEEeeEEeeeEEEEEeCCc
Confidence 357899999999999999988887754321 1 256888899999998764
No 93
>2fyi_A HTH-type transcriptional regulator CBL; Lys-R family, cofactor-binding DO cysteine biosynthesis; 2.80A {Escherichia coli K12} SCOP: c.94.1.1
Probab=31.34 E-value=71 Score=24.70 Aligned_cols=50 Identities=14% Similarity=0.196 Sum_probs=34.5
Q ss_pred eCCchhhHHHHHhcCceeEEEeCCCCChhhhhhccccccccccceEEEEEccC
Q psy13439 32 ENGKWNGLIADLVNRKTDMALTSLVINSRRESVVDFTVPIMETGIAIVVAKRT 84 (261)
Q Consensus 32 ~~~~~~gli~~L~~g~~Di~i~~i~it~eR~~~vdfS~py~~~~~~~lv~~~~ 84 (261)
..++.+.++..|.+|++|+++...... ....+. ..++......++++++.
T Consensus 48 ~~~~~~~~~~~l~~g~~Dl~i~~~~~~--~~~~l~-~~~l~~~~~~~v~~~~h 97 (228)
T 2fyi_A 48 IQGTPQEIATLLQNGEADIGIASERLS--NDPQLV-AFPWFRWHHSLLVPHDH 97 (228)
T ss_dssp EECCHHHHHHHHHHTSCSEEEESSSST--TCTTEE-EEEEEEECEEEEEETTC
T ss_pred EeCCHHHHHHHHHcCCccEEEEecccC--CCCCce-EEEeeecceEEEecCCC
Confidence 455667899999999999999643221 112222 35788888889988764
No 94
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=31.12 E-value=75 Score=25.79 Aligned_cols=50 Identities=16% Similarity=0.232 Sum_probs=34.0
Q ss_pred eCCchhhHHHHHhcCceeEEEeCCCCChhhhhhcccccccc-ccceEEEEEccCC
Q psy13439 32 ENGKWNGLIADLVNRKTDMALTSLVINSRRESVVDFTVPIM-ETGIAIVVAKRTG 85 (261)
Q Consensus 32 ~~~~~~gli~~L~~g~~Di~i~~i~it~eR~~~vdfS~py~-~~~~~~lv~~~~~ 85 (261)
..++...++..|.+|++|+++..-...++ .+. ..++. .....++++++..
T Consensus 129 ~~~~~~~~~~~l~~g~~Dl~i~~~~~~~~---~l~-~~~l~~~~~~~~v~~~~~p 179 (306)
T 3fzv_A 129 RDGEQQELVQGLTSGRFDLAFLYEHDLDS---TIE-TEPLMPPQRPHALLPEGHR 179 (306)
T ss_dssp EEECHHHHHHHHHHTSCSEEEECSSSCCT---TEE-EEESSCCBCCEEEEETTCT
T ss_pred EeCCHHHHHHHHHCCCccEEEEecccccc---ccc-eeeeeeccccEEEecCCCc
Confidence 45566788999999999999965432222 222 34566 7777888887654
No 95
>2zzv_A ABC transporter, solute-binding protein; periplasmic substrate binding protein, calcium, lactate, trap transporter, transport protein; 1.40A {Thermus thermophilus} PDB: 2zzw_A 2zzx_A
Probab=30.57 E-value=29 Score=30.27 Aligned_cols=39 Identities=8% Similarity=-0.098 Sum_probs=28.9
Q ss_pred CchhhHHHHHhcCceeEEEeCCCCChhhhhhcc-cc-cccc
Q psy13439 34 GKWNGLIADLVNRKTDMALTSLVINSRRESVVD-FT-VPIM 72 (261)
Q Consensus 34 ~~~~gli~~L~~g~~Di~i~~i~it~eR~~~vd-fS-~py~ 72 (261)
++...++.+|++|.+|++..+......+...+. |+ .||.
T Consensus 78 g~~~~~~e~v~~G~id~~~~~~~~~~~~~p~~~~~~~lP~~ 118 (361)
T 2zzv_A 78 VGTFDMFDAVKTGVLDGMNPFTLYWAGRMPVTAFLSSYALG 118 (361)
T ss_dssp SCGGGHHHHHHHTSSSEEECBGGGGTTTCGGGGGSSCCTTS
T ss_pred cCHHHHHHHHHcCceeEEEeccccccccCcHHHHHhcCCCC
Confidence 356789999999999999988776666655544 32 5654
No 96
>4exl_A PBP 1, phosphate-binding protein PSTS 1; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; 1.70A {Streptococcus pneumoniae}
Probab=29.71 E-value=64 Score=26.66 Aligned_cols=50 Identities=10% Similarity=0.171 Sum_probs=34.0
Q ss_pred hhhHHHHHhcCceeEEEeCCCCCh-hhhhhccc-cccccccceEEEEEccCC
Q psy13439 36 WNGLIADLVNRKTDMALTSLVINS-RRESVVDF-TVPIMETGIAIVVAKRTG 85 (261)
Q Consensus 36 ~~gli~~L~~g~~Di~i~~i~it~-eR~~~vdf-S~py~~~~~~~lv~~~~~ 85 (261)
-.+.+.+|.+|++|+++.+..... +..+.-++ ..|+..+++.++++.+.+
T Consensus 41 S~~gi~~l~~g~~Dig~~~~~~~~~~~~~~~~l~~~~ia~d~lvvvv~~~~~ 92 (265)
T 4exl_A 41 SGTGLSQVQSGAVDIGNSDVFAEEKDGIDASALVDHKVAVAGLALIVNKEVD 92 (265)
T ss_dssp HHHHHHHHHTTSSSEEEESSCGGGSTTCCGGGEECCEEEEEEEEEEECTTCC
T ss_pred cHHHHHHHHcCCCccccccCCcchhhcccccCceEeeEEEEEEEEEECCCCc
Confidence 367899999999999997654332 11111122 568888999999987644
No 97
>1uth_A LYSR-type regulatory protein; transcription regulation, transcriptional regulator; 2.2A {Burkholderia SP} SCOP: c.94.1.1 PDB: 1utb_A 1utb_B 1uth_B 2uyf_A 2uye_A
Probab=29.70 E-value=88 Score=25.84 Aligned_cols=50 Identities=14% Similarity=0.023 Sum_probs=34.6
Q ss_pred eCCchhhHHHHHhcCceeEEEeCCCCChhhhhhccccccccccceEEEEEccCC
Q psy13439 32 ENGKWNGLIADLVNRKTDMALTSLVINSRRESVVDFTVPIMETGIAIVVAKRTG 85 (261)
Q Consensus 32 ~~~~~~gli~~L~~g~~Di~i~~i~it~eR~~~vdfS~py~~~~~~~lv~~~~~ 85 (261)
..++...++..|.+|++|+++....... ..+. ..++......++++++.+
T Consensus 139 ~~~~~~~~~~~l~~g~~Dl~i~~~~~~~---~~l~-~~~l~~~~~~~v~~~~hp 188 (315)
T 1uth_A 139 LRPNAGNLKEDMESGAVDLALGLLPELQ---TGFF-QRRLFRHRYVCMFRKDHP 188 (315)
T ss_dssp ECTTSSCHHHHHHHTSCCEEEECCTTCC---TTEE-EEEEEEECEEEEEETTCS
T ss_pred EeCCcccHHHHHHCCCCCEEEecCCCCC---CCce-EEEeeccceEEEEeCCCC
Confidence 4555678899999999999996543221 1222 357788888888887653
No 98
>2h9b_A HTH-type transcriptional regulator BENM; LTTR, transcriptional activator, LYSR-type transcripti regulator; 1.80A {Acinetobacter SP} PDB: 2h99_A 3k1m_A 3k1n_A 3k1p_A 2f7a_A* 2f6p_A 2f78_A 2f6g_A* 2f8d_A 2f97_A*
Probab=28.11 E-value=81 Score=25.98 Aligned_cols=49 Identities=10% Similarity=0.092 Sum_probs=34.5
Q ss_pred eCCchhhHHHHHhcCceeEEEeCCCCChhhhhhccccccccccceEEEEEccC
Q psy13439 32 ENGKWNGLIADLVNRKTDMALTSLVINSRRESVVDFTVPIMETGIAIVVAKRT 84 (261)
Q Consensus 32 ~~~~~~gli~~L~~g~~Di~i~~i~it~eR~~~vdfS~py~~~~~~~lv~~~~ 84 (261)
..++.+.++..|.+|++|+++........ .+. +.++......++++++.
T Consensus 124 ~~~~~~~~~~~l~~g~~Dlai~~~~~~~~---~l~-~~~L~~~~~~~v~~~~h 172 (312)
T 2h9b_A 124 YEMGTKAQTEALKEGRIDAGFGRLKISDP---AIK-HSLLRNERLMVAVHASH 172 (312)
T ss_dssp EECCHHHHHHHHHTTSCSEEEESSCCCCT---TEE-EEEEEEEEEEEEEETTS
T ss_pred EeCCHHHHHHHHHcCCCCEEEEeCCCCCC---Cce-EEEeecceEEEEEcCCC
Confidence 45556788999999999999975433221 222 35778888888888754
No 99
>4ecf_A ABC-type phosphate transport system, periplasmic; ABC transporter, phosphate transport receptor; HET: MSE; 1.55A {Lactobacillus brevis}
Probab=27.32 E-value=73 Score=26.26 Aligned_cols=50 Identities=12% Similarity=0.216 Sum_probs=35.0
Q ss_pred hhhHHHHHhcCceeEEEeCCCCChhh-hhhccc-cccccccceEEEEEccCC
Q psy13439 36 WNGLIADLVNRKTDMALTSLVINSRR-ESVVDF-TVPIMETGIAIVVAKRTG 85 (261)
Q Consensus 36 ~~gli~~L~~g~~Di~i~~i~it~eR-~~~vdf-S~py~~~~~~~lv~~~~~ 85 (261)
-...+.+|.+|++|+++....++.+- .+.-++ ..|+..+++.++++.+.+
T Consensus 41 S~~~~~~l~~g~~Dig~~~~~~~~~e~~~~~~l~~~~i~~d~lvvvv~~~~p 92 (264)
T 4ecf_A 41 TGTGLSQIQEGAVQIGNSDLFAGEQKGINARQLVDHRVAVVGITPIVNKKVG 92 (264)
T ss_dssp HHHHHHHHHHTSSSEEEESSCGGGSTTCCGGGEECCEEEEEEEEEEECTTSS
T ss_pred CHHHHHHHHcCCCchhhccCCCChhHHhhccCCEEEEEEEEEEEEEEcCCCc
Confidence 36789999999999999876554421 111122 578888999999987643
No 100
>3lr1_A Tungstate ABC transporter, periplasmic tungstate- binding protein; the tungstate ABC transporter, structural genomics, PSI, MCSG; 1.80A {Geobacter sulfurreducens}
Probab=27.07 E-value=51 Score=27.25 Aligned_cols=49 Identities=10% Similarity=-0.079 Sum_probs=34.7
Q ss_pred hhHHHHHhcCceeEEEeCCCCChhhhhh---ccccccccccceEEEEEccCC
Q psy13439 37 NGLIADLVNRKTDMALTSLVINSRRESV---VDFTVPIMETGIAIVVAKRTG 85 (261)
Q Consensus 37 ~gli~~L~~g~~Di~i~~i~it~eR~~~---vdfS~py~~~~~~~lv~~~~~ 85 (261)
..++.++.+|.+|+.+..-....+.... ..-..++....+++++|++++
T Consensus 44 g~ll~qi~~G~aDV~isa~~~~~~~l~~~g~~~~~~~~~~n~lVlV~P~~~P 95 (236)
T 3lr1_A 44 GQALKLGEAGDVDVVFVHARKLEDKFVADGFGVNRKDVMYNDFVIVGPKNDP 95 (236)
T ss_dssp HHHHHHHHTTSCSEEEECCHHHHHHHHHTTSEEEEEEEEECCEEEEECTTCT
T ss_pred HHHHHHHhcCCCCEEeecCchhHHHHHhcCCCcceEEEEcCcEEEEEECCCh
Confidence 5688999999999998765544332211 112468899999999988754
No 101
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=25.60 E-value=75 Score=25.60 Aligned_cols=49 Identities=8% Similarity=0.172 Sum_probs=34.3
Q ss_pred eCCchhhHHHHHhcCceeEEEeCCCCChhhhhhccccccccccceEEEEEccC
Q psy13439 32 ENGKWNGLIADLVNRKTDMALTSLVINSRRESVVDFTVPIMETGIAIVVAKRT 84 (261)
Q Consensus 32 ~~~~~~gli~~L~~g~~Di~i~~i~it~eR~~~vdfS~py~~~~~~~lv~~~~ 84 (261)
..+.-+.++..|.+|++|+++....... ..+. +.++......++++++.
T Consensus 125 ~~~~~~~~~~~l~~g~~Dl~i~~~~~~~---~~l~-~~~l~~~~~~~v~~~~~ 173 (294)
T 1ixc_A 125 THMTKDEQVEGLLAGTIHVGFSRFFPRH---PGIE-IVNIAQEDLYLAVHRSQ 173 (294)
T ss_dssp EECCHHHHHHHHHHTSCSEEEESCCCCC---TTEE-EEEEEEEEEEEEEEGGG
T ss_pred EeCCHHHHHHHHHCCCccEEEEecCCCC---CCce-EEEEeeccEEEEEeCCC
Confidence 4445568899999999999997543321 2222 35778888888888764
No 102
>2h98_A HTH-type transcriptional regulator CATM; BENM, LTTR; 1.80A {Acinetobacter SP} PDB: 2h9q_A* 2f7b_A 2f7c_A* 3glb_A* 3m1e_A
Probab=23.07 E-value=92 Score=25.82 Aligned_cols=49 Identities=14% Similarity=0.215 Sum_probs=34.1
Q ss_pred eCCchhhHHHHHhcCceeEEEeCCCCChhhhhhccccccccccceEEEEEccC
Q psy13439 32 ENGKWNGLIADLVNRKTDMALTSLVINSRRESVVDFTVPIMETGIAIVVAKRT 84 (261)
Q Consensus 32 ~~~~~~gli~~L~~g~~Di~i~~i~it~eR~~~vdfS~py~~~~~~~lv~~~~ 84 (261)
..++.+.++..|.+|++|+++....... ..+. ..++......++++++.
T Consensus 124 ~~~~~~~~~~~l~~g~~Dlai~~~~~~~---~~l~-~~~L~~~~~~~v~~~~h 172 (313)
T 2h98_A 124 IECGTKDQINALKQGKIDLGFGRLKITD---PAIR-RIMLHKEQLKLAIHKHH 172 (313)
T ss_dssp EECCHHHHHHHHHHTSCSEEEESSCCCC---TTEE-EEEEEEEEEEEEEETTS
T ss_pred EeCChHHHHHHHHcCCCCEEEEeCCCCC---CCee-EEEeeeCcEEEEEcCCC
Confidence 4455678899999999999997543322 1222 35778888888888753
No 103
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein struc initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1
Probab=22.83 E-value=1.1e+02 Score=24.93 Aligned_cols=50 Identities=12% Similarity=0.066 Sum_probs=34.1
Q ss_pred eCCchhhHHHHHhcCceeEEEeC---CCCChhhhhhccccccccccceEEEEEccCC
Q psy13439 32 ENGKWNGLIADLVNRKTDMALTS---LVINSRRESVVDFTVPIMETGIAIVVAKRTG 85 (261)
Q Consensus 32 ~~~~~~gli~~L~~g~~Di~i~~---i~it~eR~~~vdfS~py~~~~~~~lv~~~~~ 85 (261)
..++.+.++..|.+|++|+++.. ..... ..+. ..++......++++++..
T Consensus 135 ~~~~~~~~~~~l~~g~~Dl~i~~~~~~~~~~---~~l~-~~~l~~~~~~~v~~~~~p 187 (310)
T 2esn_A 135 VNAERKLSVEALASGRIDFALGYDEEHERLP---EGIQ-AHDWFADRYVVVARRDHP 187 (310)
T ss_dssp ECCSSSCCHHHHHHTSSSEEEECCSTTCCCC---TTEE-EEEEEEECEEEEEESSCT
T ss_pred EeCCcccHHHHHHcCCCCEEEecCcccccCC---cCcc-eeeeeccceEEEEeCCCC
Confidence 44455678999999999999975 32221 1222 357788888888887643
No 104
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A*
Probab=20.82 E-value=1.3e+02 Score=24.51 Aligned_cols=52 Identities=17% Similarity=0.275 Sum_probs=35.4
Q ss_pred eCCchhhHHHHHhcCceeEEEeCCCCChhhhhhccccccccccceEEEEEccCC
Q psy13439 32 ENGKWNGLIADLVNRKTDMALTSLVINSRRESVVDFTVPIMETGIAIVVAKRTG 85 (261)
Q Consensus 32 ~~~~~~gli~~L~~g~~Di~i~~i~it~eR~~~vdfS~py~~~~~~~lv~~~~~ 85 (261)
..+..+.++..|.+|++|+++....... ....+ -+.++......++++++.+
T Consensus 126 ~~~~~~~~~~~l~~g~~Dlai~~~~~~~-~~~~l-~~~~L~~~~~~~v~~~~hp 177 (305)
T 3fxq_A 126 RDGMYPAVSPQLRDGTLDFALTAAHKHD-IDTDL-EAQPLYVSDVVIVGQRQHP 177 (305)
T ss_dssp EECCTTTTHHHHHHTSSSEEEEECCGGG-SCTTE-EEEEEEECCEEEEEETTCT
T ss_pred EECCHHHHHHHHHcCCCCEEEecCCCCC-CccCe-eEEEeecCcEEEEEcCCCC
Confidence 4455678999999999999996443221 01112 2467888899999987754
No 105
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=20.05 E-value=77 Score=23.81 Aligned_cols=38 Identities=16% Similarity=0.250 Sum_probs=27.8
Q ss_pred hhHHHHHhcCceeEEEeCCCCC--------hhhhhhcccccccccc
Q psy13439 37 NGLIADLVNRKTDMALTSLVIN--------SRRESVVDFTVPIMET 74 (261)
Q Consensus 37 ~gli~~L~~g~~Di~i~~i~it--------~eR~~~vdfS~py~~~ 74 (261)
..++..+.+|++|+++.--.-. .-|+..+++-.|+.++
T Consensus 86 ~~i~d~i~~g~i~lVInt~~~~~~~~~d~~~iRR~Av~~~IP~~T~ 131 (143)
T 2yvq_A 86 SSIRKLIRDGSIDLVINLPNNNTKFVHDNYVIRRTAVDSGIPLLTN 131 (143)
T ss_dssp BCHHHHHHTTSCCEEEECCCCCGGGHHHHHHHHHHHHHTTCCEECS
T ss_pred ccHHHHHHCCCceEEEECCCCCCcCCccHHHHHHHHHHhCCCeEcC
Confidence 3589999999999999754432 2355678888887764
Done!