RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13439
         (261 letters)



>d2a5sa1 c.94.1.1 (A:7-142,A:145-285) N-methyl-D-aspartate receptor
           subunit 1 {Rat (Rattus norvegicus), subtype 2A [TaxId:
           10116]}
          Length = 277

 Score = 46.6 bits (109), Expect = 9e-07
 Identities = 28/73 (38%), Positives = 44/73 (60%)

Query: 30  SVENGKWNGLIADLVNRKTDMALTSLVINSRRESVVDFTVPIMETGIAIVVAKRTGIISP 89
              N  WNG+I ++V ++  MA+ SL IN  R  VVDF+VP +ETGI+++V+++   +S 
Sbjct: 84  KKVNNVWNGMIGEVVYQRAVMAVGSLTINEERSEVVDFSVPFVETGISVMVSRQVTGLSD 143

Query: 90  TAFLEPFDTASWM 102
             F  P D +   
Sbjct: 144 KKFQRPHDYSPPF 156


>d1pb7a_ c.94.1.1 (A:) N-methyl-D-aspartate receptor subunit 1 {Rat
           (Rattus norvegicus) [TaxId: 10116]}
          Length = 289

 Score = 42.7 bits (99), Expect = 2e-05
 Identities = 23/109 (21%), Positives = 45/109 (41%), Gaps = 1/109 (0%)

Query: 23  HSKNEVLSVENGKWNGLIADLVNRKTDMALTSLVINSRRESVVDFTVPIMETGIAIVVAK 82
            ++  V +    +WNG++ +L++ + DM +  L IN+ R   ++F+ P    G+ I+V K
Sbjct: 90  GTQERVNNSNKKEWNGMMGELLSGQADMIVAPLTINNERAQYIEFSKPFKYQGLTILVKK 149

Query: 83  RTGIISPTAFLEPFDTASWMLVGVVAIQASAFTIFFFEWLSPSGFDMKI 131
            T I          + +   +   V   +          LS     M+ 
Sbjct: 150 GTRITGIN-DPRLRNPSDKFIYATVKQSSVDIYFRRQVELSTMYRHMEK 197


>d1mqia_ c.94.1.1 (A:) Glutamate receptor ligand binding core {Rat
           (Rattus norvegicus), GluR2 [TaxId: 10116]}
          Length = 260

 Score = 32.7 bits (73), Expect = 0.032
 Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 4/84 (4%)

Query: 25  KNEVLSVENGKWNGLIADLVNRKTDMALTSLVINSRRESVVDFTVPIMETGIAIVVAKRT 84
           K      +   WNG++ +LV  K D+A+  L I   RE V+DF+ P M  GI+I++ K T
Sbjct: 58  KYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGT 117

Query: 85  GIISPTAFLEPFDTASWMLVGVVA 108
            I       E     + +  G + 
Sbjct: 118 PIE----SAEDLSKQTEIAYGTLD 137


>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase,
           transmembrane domain M {Rabbit (Oryctolagus cuniculus)
           [TaxId: 9986]}
          Length = 472

 Score = 26.2 bits (57), Expect = 5.2
 Identities = 12/118 (10%), Positives = 30/118 (25%), Gaps = 2/118 (1%)

Query: 95  PFDTASWMLVGVVAIQASAFTIFFFEWLSPSGFDMKISFSYRPLPFLPPEPFDTASWMLV 154
                 +     +     A T+    W      D      ++   F+           L 
Sbjct: 306 LISGWLFFRYMAIGGYVGAATVGAAAWWFMYAEDGPGVTYHQLTHFMQCTEDHPHFEGLD 365

Query: 155 GVVAIQASAFTIFFFEWLSPSGFDMKT--TALQPSHRFSLFRTYWLVWAVLFQAAVHI 210
             +       T+     ++    +     +  Q   R   +   WL+ ++    ++H 
Sbjct: 366 CEIFEAPEPMTMALSVLVTIEMCNALNSLSENQSLMRMPPWVNIWLLGSICLSMSLHF 423


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.136    0.423 

Gapped
Lambda     K      H
   0.267   0.0417    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 996,616
Number of extensions: 45594
Number of successful extensions: 109
Number of sequences better than 10.0: 1
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 5
Length of query: 261
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 177
Effective length of database: 1,254,276
Effective search space: 222006852
Effective search space used: 222006852
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.6 bits)