BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1344
(286 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q15428|SF3A2_HUMAN Splicing factor 3A subunit 2 OS=Homo sapiens GN=SF3A2 PE=1 SV=2
Length = 464
Score = 360 bits (925), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 185/219 (84%), Positives = 201/219 (91%)
Query: 1 MDYQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 60
MD+Q+RPGGKTG GGVAS SESNRDRRERLRQLALETID+NKDPYFMKNHLGSYECKLCL
Sbjct: 1 MDFQHRPGGKTGSGGVASSSESNRDRRERLRQLALETIDINKDPYFMKNHLGSYECKLCL 60
Query: 61 TLHNNEGSYLAHTQGKKHQANLARRAAKEAKDAPQQPAPEKPRVEPKKFVKIGRPGYRVT 120
TLHNNEGSYLAHTQGKKHQ NLARRAAKEAK+AP QPAPEK +VE KKFVKIGRPGY+VT
Sbjct: 61 TLHNNEGSYLAHTQGKKHQTNLARRAAKEAKEAPAQPAPEKVKVEVKKFVKIGRPGYKVT 120
Query: 121 KQRDPSNGQQSLLFQVDYPEIADDVFPRHRFMSAYEQRIEPPDRKWQYLLFAAEPYETIA 180
KQRD GQQSLLFQ+DYPEIA+ + PRHRFMSAYEQRIEPPDR+WQYLL AAEPYETIA
Sbjct: 121 KQRDSEMGQQSLLFQIDYPEIAEGIMPRHRFMSAYEQRIEPPDRRWQYLLMAAEPYETIA 180
Query: 181 FKVPSREVDKGDTKFWTHWNKDTKQFFLQFSFRNESKPS 219
FKVPSRE+DK + KFWTHWN++TKQFFLQF F+ E P+
Sbjct: 181 FKVPSREIDKAEGKFWTHWNRETKQFFLQFHFKMEKPPA 219
>sp|Q6AXT8|SF3A2_RAT Splicing factor 3A subunit 2 OS=Rattus norvegicus GN=Sf3a2 PE=2
SV=1
Length = 471
Score = 360 bits (925), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 186/219 (84%), Positives = 201/219 (91%)
Query: 1 MDYQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 60
MD+Q+RPGGKTG GGVAS SESNRDRRERLRQLALETID+NKDPYFMKNHLGSYECKLCL
Sbjct: 1 MDFQHRPGGKTGSGGVASSSESNRDRRERLRQLALETIDINKDPYFMKNHLGSYECKLCL 60
Query: 61 TLHNNEGSYLAHTQGKKHQANLARRAAKEAKDAPQQPAPEKPRVEPKKFVKIGRPGYRVT 120
TLHNNEGSYLAHTQGKKHQ NLARRAAKEAK+AP QPAPEK +VE KKFVKIGRPGY+VT
Sbjct: 61 TLHNNEGSYLAHTQGKKHQTNLARRAAKEAKEAPAQPAPEKVKVEVKKFVKIGRPGYKVT 120
Query: 121 KQRDPSNGQQSLLFQVDYPEIADDVFPRHRFMSAYEQRIEPPDRKWQYLLFAAEPYETIA 180
KQRD GQQSLLFQ+DYPEIA+ V PRHRFMSAYEQRIEPPDR+WQYLL AAEPYETIA
Sbjct: 121 KQRDTEMGQQSLLFQIDYPEIAEGVMPRHRFMSAYEQRIEPPDRRWQYLLMAAEPYETIA 180
Query: 181 FKVPSREVDKGDTKFWTHWNKDTKQFFLQFSFRNESKPS 219
FKVPSRE+DK + KFWTHWN++TKQFFLQF F+ E P+
Sbjct: 181 FKVPSREIDKAEGKFWTHWNRETKQFFLQFHFKMEKPPA 219
>sp|A5PJN8|SF3A2_BOVIN Splicing factor 3A subunit 2 OS=Bos taurus GN=SF3A2 PE=2 SV=1
Length = 477
Score = 359 bits (922), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 185/219 (84%), Positives = 201/219 (91%)
Query: 1 MDYQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 60
MD+Q+RPGGKTG GGVAS SESNRDRRERLRQLALETID+NKDPYFMKNHLGSYECKLCL
Sbjct: 1 MDFQHRPGGKTGSGGVASSSESNRDRRERLRQLALETIDINKDPYFMKNHLGSYECKLCL 60
Query: 61 TLHNNEGSYLAHTQGKKHQANLARRAAKEAKDAPQQPAPEKPRVEPKKFVKIGRPGYRVT 120
TLHNNEGSYLAHTQGKKHQ NLARRAAKEAK+AP QPAPEK +VE KKFVKIGRPGY+VT
Sbjct: 61 TLHNNEGSYLAHTQGKKHQTNLARRAAKEAKEAPAQPAPEKVKVEVKKFVKIGRPGYKVT 120
Query: 121 KQRDPSNGQQSLLFQVDYPEIADDVFPRHRFMSAYEQRIEPPDRKWQYLLFAAEPYETIA 180
KQRD GQQSLLFQ+DYPEIA+ + PRHRFMSAYEQRIEPPDR+WQYLL AAEPYETIA
Sbjct: 121 KQRDTEMGQQSLLFQIDYPEIAEGIMPRHRFMSAYEQRIEPPDRRWQYLLMAAEPYETIA 180
Query: 181 FKVPSREVDKGDTKFWTHWNKDTKQFFLQFSFRNESKPS 219
FKVPSRE+DK + KFWTHWN++TKQFFLQF F+ E P+
Sbjct: 181 FKVPSREIDKAEGKFWTHWNRETKQFFLQFHFKMEKPPA 219
>sp|Q62203|SF3A2_MOUSE Splicing factor 3A subunit 2 OS=Mus musculus GN=Sf3a2 PE=2 SV=2
Length = 475
Score = 334 bits (856), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 176/219 (80%), Positives = 191/219 (87%), Gaps = 10/219 (4%)
Query: 1 MDYQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 60
MD+Q+RPGGKTG GGVAS SESNRDRRERLRQLALETID+NKDPYFMKNHLGSYECKLCL
Sbjct: 1 MDFQHRPGGKTGSGGVASSSESNRDRRERLRQLALETIDINKDPYFMKNHLGSYECKLCL 60
Query: 61 TLHNNEGSYLAHTQGKKHQANLARRAAKEAKDAPQQPAPEKPRVEPKKFVKIGRPGYRVT 120
TLHNNEGSYLAHTQGKKHQ NLARRAAKEAK+AP QPAPE+ +VE KKFVKIGRPGY+VT
Sbjct: 61 TLHNNEGSYLAHTQGKKHQTNLARRAAKEAKEAPAQPAPEQVKVEVKKFVKIGRPGYKVT 120
Query: 121 KQRDPSNGQQSLLFQVDYPEIADDVFPRHRFMSAYEQRIEPPDRKWQYLLFAAEPYETIA 180
KQRD GQQSLLFQ+DYPEIA+ + PRHRFMSAYEQRIEPPDR+WQYLL AAEPYETIA
Sbjct: 121 KQRDTEMGQQSLLFQIDYPEIAEGIMPRHRFMSAYEQRIEPPDRRWQYLLMAAEPYETIA 180
Query: 181 FKVPSREVDKGDTKFWTHWNKDTKQFFLQFSFRNESKPS 219
FKVPSRE+DK + KF FFLQF F+ E P+
Sbjct: 181 FKVPSREIDKAEGKF----------FFLQFHFKMEKPPA 209
>sp|Q54B65|SF3A2_DICDI Splicing factor 3A subunit 2 OS=Dictyostelium discoideum GN=sf3a2
PE=3 SV=1
Length = 215
Score = 267 bits (683), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 124/211 (58%), Positives = 160/211 (75%), Gaps = 7/211 (3%)
Query: 9 GKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCLTLHNNEGS 68
GK G GG+ S N DRRER +QL LE +D++KDPY + NH+GS+EC+LCLT+HNN G+
Sbjct: 5 GKAGSGGLQSSQYDNIDRRERQKQLVLEHVDVSKDPYIISNHIGSFECRLCLTVHNNVGN 64
Query: 69 YLAHTQGKKHQANLARRAAKEAKDAP---QQPAPEKPRVEPKKFVKIGRPGYRVTKQRDP 125
YLAHTQGKKHQ +LARRAAKE ++ P + + RV KK +KIGRPGY++ KQRD
Sbjct: 65 YLAHTQGKKHQTHLARRAAKEQRENPSVSKNNYIQTTRVIHKKTIKIGRPGYKIIKQRDS 124
Query: 126 SNGQQSLLFQVDYPEIADDVFPRHRFMSAYEQRIEPPDRKWQYLLFAAEPYETIAFKVPS 185
GQ SLLFQ+DYPEI + PRHR MSA+EQR+E P++ +QYLLFAAEPYETIAFK+P+
Sbjct: 125 KTGQLSLLFQIDYPEIESGLQPRHRIMSAFEQRVEQPNKDYQYLLFAAEPYETIAFKIPN 184
Query: 186 REVDKG---DTKFWTHWNKDTKQFFLQFSFR 213
+E+D+ D KF+THW+++ K F LQ F+
Sbjct: 185 KEIDRTTGPDGKFFTHWDRN-KTFTLQLYFK 214
>sp|Q9P7L8|SAP62_SCHPO Pre-mRNA-splicing factor sap62 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=sap62 PE=1 SV=1
Length = 217
Score = 257 bits (657), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 131/226 (57%), Positives = 164/226 (72%), Gaps = 16/226 (7%)
Query: 1 MDYQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 60
MDYQNR G + GGGGVA + E+N RRERLR+LALETIDL+KDPY MKNHLG++EC+LCL
Sbjct: 1 MDYQNRAGVRFGGGGVAGYQETNAARRERLRKLALETIDLSKDPYLMKNHLGTFECRLCL 60
Query: 61 TLHNNEGSYLAHTQGKKHQANLARRAAKEAKDAPQQPAPE------KPRVEPKK-FVKIG 113
T H NE SYL HTQGKKHQ NLARR A E K + Q+ AP+ + V+ KK VKIG
Sbjct: 61 TTHANENSYLTHTQGKKHQTNLARRQALENKKS-QENAPQVLLGISQSHVQVKKSVVKIG 119
Query: 114 RPGYRVTKQRDPSNGQQSLLFQVDYPEIADDVFPRHRFMSAYEQRIEPPDRKWQYLLFAA 173
RPGY+V+K R+ +G+ L FQ+ YP+I + PR+R MSAYEQR+E PDRK+QYL+ AA
Sbjct: 120 RPGYKVSKIREAESGKFGLRFQIKYPDIEVNAKPRYRIMSAYEQRVEAPDRKFQYLVVAA 179
Query: 174 EPYETIAFKVPSREVDKGDTKFWTHWNKDTKQFFLQFSFRNESKPS 219
EPYE+IAFK +D+ KFW++W D + +QF F N +K S
Sbjct: 180 EPYESIAFK-----IDRAPGKFWSYW--DAPTYTIQF-FYNLTKIS 217
>sp|Q07350|PRP11_YEAST Pre-mRNA-splicing factor PRP11 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=PRP11 PE=1 SV=1
Length = 266
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 108/244 (44%), Gaps = 48/244 (19%)
Query: 16 VASWSESNRDRRERLRQLALE------TIDLNKD------PYFMKNHLGSYECKLCLTLH 63
+AS S+ N RR+ + L + T KD PY KNH G CKLC T+H
Sbjct: 16 IASESQFNLQRRKEVESLLSKGENVPYTFQDEKDDQVRSNPYIYKNHSGKLVCKLCNTMH 75
Query: 64 NNEGSYLAHTQGKKHQANLARRAAKEAKDAPQQPA-------PEKPRVEPKKFVKIG--R 114
+ S H GKKH N+ RR K + + ++ +E K+ +K
Sbjct: 76 MSWSSVERHLGGKKHGLNVLRRGISIEKSSLGREGQTTHDFRQQQKIIEAKQSLKNNGTI 135
Query: 115 PGYRVTKQRDPSNGQQSLLFQVDY-PEI------ADD---VFPRHRFMSAYEQRIEPPDR 164
P ++ ++P NG L QV+Y E+ +DD V P R +S E + +
Sbjct: 136 PVCKIATVKNPKNGSVGLAIQVNYSSEVKENSVDSDDKAKVPPLIRIVSGLELS-DTKQK 194
Query: 165 KWQYLLFAAEPYETIAFKVPSRE---------------VDKGDTKFWTHWNKDTKQFFLQ 209
++L+ A EP+E IA ++P E VD+ + K T W+ +K +++Q
Sbjct: 195 GKKFLVIAYEPFENIAIELPPNEILFSENNDMDNNNDGVDELNKK-CTFWDAISKLYYVQ 253
Query: 210 FSFR 213
F F+
Sbjct: 254 FFFK 257
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.137 0.443
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 146,632,714
Number of Sequences: 539616
Number of extensions: 8228102
Number of successful extensions: 156241
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1739
Number of HSP's successfully gapped in prelim test: 1531
Number of HSP's that attempted gapping in prelim test: 56122
Number of HSP's gapped (non-prelim): 38849
length of query: 286
length of database: 191,569,459
effective HSP length: 116
effective length of query: 170
effective length of database: 128,974,003
effective search space: 21925580510
effective search space used: 21925580510
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)