Your job contains 1 sequence.
>psy1344
MDYQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCL
TLHNNEGSYLAHTQGKKHQANLARRAAKEAKDAPQQPAPEKPRVEPKKFVKIGRPGYRVT
KQRDPSNGQQSLLFQVDYPEIADDVFPRHRFMSAYEQRIEPPDRKWQYLLFAAEPYETIA
FKVPSREVDKGDTKFWTHWNKDTKQFFLQFSFRNESKPSFRPPPSPSPAIRNNLPPPPML
PPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPPPPPPN
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy1344
(286 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0036314 - symbol:CG10754 species:7227 "Drosophila ... 1023 2.9e-103 1
ZFIN|ZDB-GENE-040426-897 - symbol:sf3a2 "splicing factor ... 1017 1.3e-102 1
RGD|1308627 - symbol:Sf3a2 "splicing factor 3a, subunit 2... 1011 5.4e-102 1
UNIPROTKB|A5PJN8 - symbol:SF3A2 "Splicing factor 3A subun... 1010 6.9e-102 1
UNIPROTKB|G3MW14 - symbol:SF3A2 "Splicing factor 3A subun... 1010 6.9e-102 1
UNIPROTKB|J9P6E2 - symbol:SF3A2 "Uncharacterized protein"... 1010 6.9e-102 1
UNIPROTKB|Q15428 - symbol:SF3A2 "Splicing factor 3A subun... 1010 6.9e-102 1
WB|WBGene00008683 - symbol:repo-1 species:6239 "Caenorhab... 929 2.7e-93 1
UNIPROTKB|Q19335 - symbol:repo-1 "Protein REPO-1" species... 929 2.7e-93 1
UNIPROTKB|E2QXZ1 - symbol:SF3A2 "Uncharacterized protein"... 877 8.6e-88 1
TAIR|locus:2060279 - symbol:AT2G32600 species:3702 "Arabi... 773 9.0e-77 1
ASPGD|ASPL0000030386 - symbol:AN5530 species:162425 "Emer... 695 1.7e-68 1
UNIPROTKB|F1NDG0 - symbol:AMH "Uncharacterized protein" s... 688 9.2e-68 1
UNIPROTKB|F1NUL0 - symbol:AMH "Uncharacterized protein" s... 688 9.2e-68 1
UNIPROTKB|G4MKX4 - symbol:MGG_05375 "Splicing factor 3a s... 378 4.8e-66 2
DICTYBASE|DDB_G0293876 - symbol:sf3a2 "splicing factor 3A... 659 1.1e-64 1
UNIPROTKB|K7EKV8 - symbol:SF3A2 "Splicing factor 3A subun... 638 1.8e-62 1
UNIPROTKB|K7EMT0 - symbol:SF3A2 "Splicing factor 3A subun... 638 1.8e-62 1
UNIPROTKB|K7EP23 - symbol:SF3A2 "Splicing factor 3A subun... 634 4.8e-62 1
POMBASE|SPBC21C3.05 - symbol:sap62 "zinc finger protein S... 633 6.2e-62 1
GENEDB_PFALCIPARUM|PFF0970w - symbol:PFF0970w "splicing f... 613 8.1e-60 1
UNIPROTKB|C6KT39 - symbol:PFF0970w "Splicing factor 3a su... 613 8.1e-60 1
CGD|CAL0004398 - symbol:orf19.4724 species:5476 "Candida ... 302 1.2e-39 2
SGD|S000002201 - symbol:PRP11 "Subunit of the SF3a splici... 172 4.4e-13 1
>FB|FBgn0036314 [details] [associations]
symbol:CG10754 species:7227 "Drosophila melanogaster"
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;ISS]
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0005686 "U2
snRNP" evidence=ISS] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0007052
"mitotic spindle organization" evidence=IMP] [GO:0071011
"precatalytic spliceosome" evidence=IDA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0022008 "neurogenesis"
evidence=IMP] InterPro:IPR000690 InterPro:IPR003604
InterPro:IPR015880 InterPro:IPR019134 PROSITE:PS50171 SMART:SM00355
SMART:SM00451 SMART:SM01050 EMBL:AE014296 GO:GO:0007052
GO:GO:0022008 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 GO:GO:0005686
eggNOG:COG5246 GeneTree:ENSGT00670000097795 KO:K12826 OMA:KWQYLLF
EMBL:AY118970 RefSeq:NP_648603.1 UniGene:Dm.23998 SMR:Q9VU15
IntAct:Q9VU15 MINT:MINT-1611863 STRING:Q9VU15
EnsemblMetazoa:FBtr0075944 GeneID:39456 KEGG:dme:Dmel_CG10754
UCSC:CG10754-RA FlyBase:FBgn0036314 InParanoid:Q9VU15
OrthoDB:EOG4JH9XP GenomeRNAi:39456 NextBio:813737 Uniprot:Q9VU15
Length = 264
Score = 1023 (365.2 bits), Expect = 2.9e-103, P = 2.9e-103
Identities = 188/216 (87%), Positives = 201/216 (93%)
Query: 1 MDYQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 60
MD+QNR GGKTG GGVASWSE+NRDR+ERLRQLALETIDLNKDPYFMKNHLGSYECKLCL
Sbjct: 1 MDFQNRAGGKTGSGGVASWSETNRDRKERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 60
Query: 61 TLHNNEGSYLAHTQGKKHQANLARRAAKEAKDAPQQP-APEKPRVEPKKFVKIGRPGYRV 119
TLHNNEGSYLAHTQGKKHQ NLARRAAKEAK+AP APEKPRVEPKKFVKIGRPGYRV
Sbjct: 61 TLHNNEGSYLAHTQGKKHQDNLARRAAKEAKEAPSSLLAPEKPRVEPKKFVKIGRPGYRV 120
Query: 120 TKQRDPSNGQQSLLFQVDYPEIADDVFPRHRFMSAYEQRIEPPDRKWQYLLFAAEPYETI 179
TKQR+ SNGQQSLLFQVDYPEI + + PRHRFMSAYEQ+IEPPDRKWQYLLFAAEPYETI
Sbjct: 121 TKQRELSNGQQSLLFQVDYPEITESIVPRHRFMSAYEQKIEPPDRKWQYLLFAAEPYETI 180
Query: 180 AFKVPSREVDKGDTKFWTHWNKDTKQFFLQFSFRNE 215
FKVPSREV+K + KFWTHWN+DTKQFFLQF+F+ E
Sbjct: 181 GFKVPSREVEKSEGKFWTHWNRDTKQFFLQFAFKFE 216
>ZFIN|ZDB-GENE-040426-897 [details] [associations]
symbol:sf3a2 "splicing factor 3a, subunit 2"
species:7955 "Danio rerio" [GO:0005622 "intracellular"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR000690 InterPro:IPR003604
InterPro:IPR015880 InterPro:IPR019134 PROSITE:PS50171 SMART:SM00355
SMART:SM00451 SMART:SM01050 ZFIN:ZDB-GENE-040426-897 GO:GO:0005634
GO:GO:0046872 GO:GO:0008270 GO:GO:0003676 eggNOG:COG5246
GeneTree:ENSGT00670000097795 HOGENOM:HOG000191688 KO:K12826
CTD:8175 OrthoDB:EOG4P8FK1 OMA:KWQYLLF HOVERGEN:HBG060566
EMBL:BX324113 EMBL:BC045907 EMBL:BC066469 IPI:IPI00482860
RefSeq:NP_957337.1 UniGene:Dr.114115 STRING:Q7ZVD4
Ensembl:ENSDART00000010699 GeneID:394018 KEGG:dre:394018
InParanoid:Q7ZVD4 NextBio:20814983 Uniprot:Q7ZVD4
Length = 278
Score = 1017 (363.1 bits), Expect = 1.3e-102, P = 1.3e-102
Identities = 185/215 (86%), Positives = 202/215 (93%)
Query: 1 MDYQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 60
MD+Q+R GGKTG GGVAS SESNRDRRERLRQLALETID+NKDPYFMKNHLGSYECKLCL
Sbjct: 1 MDFQHRAGGKTGSGGVASASESNRDRRERLRQLALETIDINKDPYFMKNHLGSYECKLCL 60
Query: 61 TLHNNEGSYLAHTQGKKHQANLARRAAKEAKDAPQQPAPEKPRVEPKKFVKIGRPGYRVT 120
TLHNNEGSYLAHTQGKKHQ+NLARRAAKEAK+AP QPAPEK +VE KKFVKIGRPGY+VT
Sbjct: 61 TLHNNEGSYLAHTQGKKHQSNLARRAAKEAKEAPAQPAPEKVKVEVKKFVKIGRPGYKVT 120
Query: 121 KQRDPSNGQQSLLFQVDYPEIADDVFPRHRFMSAYEQRIEPPDRKWQYLLFAAEPYETIA 180
KQRDP GQQSLLFQ+DYPEIA+ + PRHRFMSAYEQRIEPPDR+WQYLLFAAEPYETIA
Sbjct: 121 KQRDPEIGQQSLLFQIDYPEIAEGIGPRHRFMSAYEQRIEPPDRRWQYLLFAAEPYETIA 180
Query: 181 FKVPSREVDKGDTKFWTHWNKDTKQFFLQFSFRNE 215
FKVPSRE+DK +T+FWTHWN++TKQFFLQF F+ E
Sbjct: 181 FKVPSREIDKAETRFWTHWNRETKQFFLQFHFKME 215
>RGD|1308627 [details] [associations]
symbol:Sf3a2 "splicing factor 3a, subunit 2" species:10116
"Rattus norvegicus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA;ISO]
[GO:0006397 "mRNA processing" evidence=IEA;ISO] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
InterPro:IPR000690 InterPro:IPR003604 InterPro:IPR015880
InterPro:IPR019134 PROSITE:PS50171 SMART:SM00355 SMART:SM00451
SMART:SM01050 RGD:1308627 GO:GO:0008380 GO:GO:0046872 GO:GO:0008270
GO:GO:0006397 GO:GO:0005681 GO:GO:0003676 eggNOG:COG5246
GeneTree:ENSGT00670000097795 KO:K12826 CTD:8175
HOGENOM:HOG000154298 OrthoDB:EOG4P8FK1 HOVERGEN:HBG060566
OMA:GIHPQAP EMBL:BC079320 IPI:IPI00464554 RefSeq:NP_001011986.1
UniGene:Rn.102569 STRING:Q6AXT8 Ensembl:ENSRNOT00000026202
GeneID:299620 KEGG:rno:299620 UCSC:RGD:1308627 InParanoid:Q6AXT8
NextBio:645532 Genevestigator:Q6AXT8 Uniprot:Q6AXT8
Length = 471
Score = 1011 (360.9 bits), Expect = 5.4e-102, P = 5.4e-102
Identities = 185/215 (86%), Positives = 199/215 (92%)
Query: 1 MDYQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 60
MD+Q+RPGGKTG GGVAS SESNRDRRERLRQLALETID+NKDPYFMKNHLGSYECKLCL
Sbjct: 1 MDFQHRPGGKTGSGGVASSSESNRDRRERLRQLALETIDINKDPYFMKNHLGSYECKLCL 60
Query: 61 TLHNNEGSYLAHTQGKKHQANLARRAAKEAKDAPQQPAPEKPRVEPKKFVKIGRPGYRVT 120
TLHNNEGSYLAHTQGKKHQ NLARRAAKEAK+AP QPAPEK +VE KKFVKIGRPGY+VT
Sbjct: 61 TLHNNEGSYLAHTQGKKHQTNLARRAAKEAKEAPAQPAPEKVKVEVKKFVKIGRPGYKVT 120
Query: 121 KQRDPSNGQQSLLFQVDYPEIADDVFPRHRFMSAYEQRIEPPDRKWQYLLFAAEPYETIA 180
KQRD GQQSLLFQ+DYPEIA+ V PRHRFMSAYEQRIEPPDR+WQYLL AAEPYETIA
Sbjct: 121 KQRDTEMGQQSLLFQIDYPEIAEGVMPRHRFMSAYEQRIEPPDRRWQYLLMAAEPYETIA 180
Query: 181 FKVPSREVDKGDTKFWTHWNKDTKQFFLQFSFRNE 215
FKVPSRE+DK + KFWTHWN++TKQFFLQF F+ E
Sbjct: 181 FKVPSREIDKAEGKFWTHWNRETKQFFLQFHFKME 215
>UNIPROTKB|A5PJN8 [details] [associations]
symbol:SF3A2 "Splicing factor 3A subunit 2" species:9913
"Bos taurus" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000690 InterPro:IPR003604
InterPro:IPR015880 InterPro:IPR019134 PROSITE:PS50171 SMART:SM00355
SMART:SM00451 SMART:SM01050 GO:GO:0008380 GO:GO:0046872
GO:GO:0008270 GO:GO:0006397 GO:GO:0003676 GO:GO:0071013
eggNOG:COG5246 KO:K12826 EMBL:BC142185 IPI:IPI00707096
RefSeq:NP_001092681.1 UniGene:Bt.27293 STRING:A5PJN8 PRIDE:A5PJN8
GeneID:789082 KEGG:bta:789082 CTD:8175 HOGENOM:HOG000154298
InParanoid:A5PJN8 OrthoDB:EOG4P8FK1 NextBio:20929492 Uniprot:A5PJN8
Length = 477
Score = 1010 (360.6 bits), Expect = 6.9e-102, P = 6.9e-102
Identities = 184/215 (85%), Positives = 199/215 (92%)
Query: 1 MDYQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 60
MD+Q+RPGGKTG GGVAS SESNRDRRERLRQLALETID+NKDPYFMKNHLGSYECKLCL
Sbjct: 1 MDFQHRPGGKTGSGGVASSSESNRDRRERLRQLALETIDINKDPYFMKNHLGSYECKLCL 60
Query: 61 TLHNNEGSYLAHTQGKKHQANLARRAAKEAKDAPQQPAPEKPRVEPKKFVKIGRPGYRVT 120
TLHNNEGSYLAHTQGKKHQ NLARRAAKEAK+AP QPAPEK +VE KKFVKIGRPGY+VT
Sbjct: 61 TLHNNEGSYLAHTQGKKHQTNLARRAAKEAKEAPAQPAPEKVKVEVKKFVKIGRPGYKVT 120
Query: 121 KQRDPSNGQQSLLFQVDYPEIADDVFPRHRFMSAYEQRIEPPDRKWQYLLFAAEPYETIA 180
KQRD GQQSLLFQ+DYPEIA+ + PRHRFMSAYEQRIEPPDR+WQYLL AAEPYETIA
Sbjct: 121 KQRDTEMGQQSLLFQIDYPEIAEGIMPRHRFMSAYEQRIEPPDRRWQYLLMAAEPYETIA 180
Query: 181 FKVPSREVDKGDTKFWTHWNKDTKQFFLQFSFRNE 215
FKVPSRE+DK + KFWTHWN++TKQFFLQF F+ E
Sbjct: 181 FKVPSREIDKAEGKFWTHWNRETKQFFLQFHFKME 215
>UNIPROTKB|G3MW14 [details] [associations]
symbol:SF3A2 "Splicing factor 3A subunit 2" species:9913
"Bos taurus" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000690 InterPro:IPR003604
InterPro:IPR015880 InterPro:IPR019134 PROSITE:PS50171 SMART:SM00355
SMART:SM00451 SMART:SM01050 GO:GO:0046872 GO:GO:0008270
GO:GO:0006397 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00670000097795 OMA:GIHPQAP EMBL:DAAA02019685
Ensembl:ENSBTAT00000035788 Uniprot:G3MW14
Length = 411
Score = 1010 (360.6 bits), Expect = 6.9e-102, P = 6.9e-102
Identities = 184/215 (85%), Positives = 199/215 (92%)
Query: 1 MDYQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 60
MD+Q+RPGGKTG GGVAS SESNRDRRERLRQLALETID+NKDPYFMKNHLGSYECKLCL
Sbjct: 1 MDFQHRPGGKTGSGGVASSSESNRDRRERLRQLALETIDINKDPYFMKNHLGSYECKLCL 60
Query: 61 TLHNNEGSYLAHTQGKKHQANLARRAAKEAKDAPQQPAPEKPRVEPKKFVKIGRPGYRVT 120
TLHNNEGSYLAHTQGKKHQ NLARRAAKEAK+AP QPAPEK +VE KKFVKIGRPGY+VT
Sbjct: 61 TLHNNEGSYLAHTQGKKHQTNLARRAAKEAKEAPAQPAPEKVKVEVKKFVKIGRPGYKVT 120
Query: 121 KQRDPSNGQQSLLFQVDYPEIADDVFPRHRFMSAYEQRIEPPDRKWQYLLFAAEPYETIA 180
KQRD GQQSLLFQ+DYPEIA+ + PRHRFMSAYEQRIEPPDR+WQYLL AAEPYETIA
Sbjct: 121 KQRDTEMGQQSLLFQIDYPEIAEGIMPRHRFMSAYEQRIEPPDRRWQYLLMAAEPYETIA 180
Query: 181 FKVPSREVDKGDTKFWTHWNKDTKQFFLQFSFRNE 215
FKVPSRE+DK + KFWTHWN++TKQFFLQF F+ E
Sbjct: 181 FKVPSREIDKAEGKFWTHWNRETKQFFLQFHFKME 215
>UNIPROTKB|J9P6E2 [details] [associations]
symbol:SF3A2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000690 InterPro:IPR003604
InterPro:IPR015880 InterPro:IPR019134 PROSITE:PS50171 SMART:SM00355
SMART:SM00451 SMART:SM01050 GO:GO:0005634 GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 GeneTree:ENSGT00670000097795 KO:K12826
CTD:8175 OMA:GIHPQAP EMBL:AAEX03012610 RefSeq:XP_855016.2
Ensembl:ENSCAFT00000049949 GeneID:612188 KEGG:cfa:612188
Uniprot:J9P6E2
Length = 478
Score = 1010 (360.6 bits), Expect = 6.9e-102, P = 6.9e-102
Identities = 184/215 (85%), Positives = 199/215 (92%)
Query: 1 MDYQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 60
MD+Q+RPGGKTG GGVAS SESNRDRRERLRQLALETID+NKDPYFMKNHLGSYECKLCL
Sbjct: 1 MDFQHRPGGKTGSGGVASSSESNRDRRERLRQLALETIDINKDPYFMKNHLGSYECKLCL 60
Query: 61 TLHNNEGSYLAHTQGKKHQANLARRAAKEAKDAPQQPAPEKPRVEPKKFVKIGRPGYRVT 120
TLHNNEGSYLAHTQGKKHQ NLARRAAKEAK+AP QPAPEK +VE KKFVKIGRPGY+VT
Sbjct: 61 TLHNNEGSYLAHTQGKKHQTNLARRAAKEAKEAPAQPAPEKVKVEVKKFVKIGRPGYKVT 120
Query: 121 KQRDPSNGQQSLLFQVDYPEIADDVFPRHRFMSAYEQRIEPPDRKWQYLLFAAEPYETIA 180
KQRD GQQSLLFQ+DYPEIA+ + PRHRFMSAYEQRIEPPDR+WQYLL AAEPYETIA
Sbjct: 121 KQRDTEMGQQSLLFQIDYPEIAEGIMPRHRFMSAYEQRIEPPDRRWQYLLMAAEPYETIA 180
Query: 181 FKVPSREVDKGDTKFWTHWNKDTKQFFLQFSFRNE 215
FKVPSRE+DK + KFWTHWN++TKQFFLQF F+ E
Sbjct: 181 FKVPSREIDKAEGKFWTHWNRETKQFFLQFHFKME 215
>UNIPROTKB|Q15428 [details] [associations]
symbol:SF3A2 "Splicing factor 3A subunit 2" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;TAS] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0030532 "small nuclear
ribonucleoprotein complex" evidence=TAS] [GO:0000389 "mRNA
3'-splice site recognition" evidence=TAS] [GO:0005681 "spliceosomal
complex" evidence=IDA] [GO:0006397 "mRNA processing" evidence=IMP]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
Reactome:REACT_71 InterPro:IPR000690 InterPro:IPR003604
InterPro:IPR015880 InterPro:IPR019134 PROSITE:PS50171 SMART:SM00355
SMART:SM00451 SMART:SM01050 GO:GO:0005654 GO:GO:0046872
GO:GO:0008270 Reactome:REACT_1675 GO:GO:0003676 EMBL:CH471139
GO:GO:0071013 GO:GO:0030532 GO:GO:0000389 EMBL:AC005263
eggNOG:COG5246 KO:K12826 CTD:8175 OrthoDB:EOG4P8FK1 EMBL:L21990
EMBL:AK314815 EMBL:BC004434 EMBL:BC009903 IPI:IPI00017341
PIR:A47655 RefSeq:NP_009096.2 UniGene:Hs.115232
ProteinModelPortal:Q15428 SMR:Q15428 IntAct:Q15428
MINT:MINT-1190499 STRING:Q15428 PhosphoSite:Q15428 DMDM:20141793
PaxDb:Q15428 PRIDE:Q15428 DNASU:8175 Ensembl:ENST00000221494
GeneID:8175 KEGG:hsa:8175 UCSC:uc002lvg.3 GeneCards:GC19P002236
HGNC:HGNC:10766 MIM:600796 neXtProt:NX_Q15428 PharmGKB:PA35684
HOVERGEN:HBG060566 InParanoid:Q15428 OMA:GIHPQAP PhylomeDB:Q15428
GenomeRNAi:8175 NextBio:30856 Bgee:Q15428 CleanEx:HS_SF3A2
Genevestigator:Q15428 GermOnline:ENSG00000104897 Uniprot:Q15428
Length = 464
Score = 1010 (360.6 bits), Expect = 6.9e-102, P = 6.9e-102
Identities = 184/215 (85%), Positives = 199/215 (92%)
Query: 1 MDYQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 60
MD+Q+RPGGKTG GGVAS SESNRDRRERLRQLALETID+NKDPYFMKNHLGSYECKLCL
Sbjct: 1 MDFQHRPGGKTGSGGVASSSESNRDRRERLRQLALETIDINKDPYFMKNHLGSYECKLCL 60
Query: 61 TLHNNEGSYLAHTQGKKHQANLARRAAKEAKDAPQQPAPEKPRVEPKKFVKIGRPGYRVT 120
TLHNNEGSYLAHTQGKKHQ NLARRAAKEAK+AP QPAPEK +VE KKFVKIGRPGY+VT
Sbjct: 61 TLHNNEGSYLAHTQGKKHQTNLARRAAKEAKEAPAQPAPEKVKVEVKKFVKIGRPGYKVT 120
Query: 121 KQRDPSNGQQSLLFQVDYPEIADDVFPRHRFMSAYEQRIEPPDRKWQYLLFAAEPYETIA 180
KQRD GQQSLLFQ+DYPEIA+ + PRHRFMSAYEQRIEPPDR+WQYLL AAEPYETIA
Sbjct: 121 KQRDSEMGQQSLLFQIDYPEIAEGIMPRHRFMSAYEQRIEPPDRRWQYLLMAAEPYETIA 180
Query: 181 FKVPSREVDKGDTKFWTHWNKDTKQFFLQFSFRNE 215
FKVPSRE+DK + KFWTHWN++TKQFFLQF F+ E
Sbjct: 181 FKVPSREIDKAEGKFWTHWNRETKQFFLQFHFKME 215
>WB|WBGene00008683 [details] [associations]
symbol:repo-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0071688 "striated muscle myosin
thick filament assembly" evidence=IMP] [GO:0007281 "germ cell
development" evidence=IMP] [GO:0018991 "oviposition" evidence=IMP]
InterPro:IPR000690 InterPro:IPR003604 InterPro:IPR015880
InterPro:IPR019134 PROSITE:PS50171 SMART:SM00355 SMART:SM00451
SMART:SM01050 GO:GO:0005634 GO:GO:0009792 GO:GO:0002009
GO:GO:0006898 GO:GO:0040007 GO:GO:0018991 GO:GO:0002119
GO:GO:0046872 GO:GO:0008270 GO:GO:0071688 GO:GO:0040011
GO:GO:0003676 GO:GO:0040035 GO:GO:0007281 EMBL:Z68297
eggNOG:COG5246 GeneTree:ENSGT00670000097795 HOGENOM:HOG000191688
KO:K12826 OMA:KWQYLLF PIR:T20735 RefSeq:NP_502290.1
ProteinModelPortal:Q19335 DIP:DIP-26535N IntAct:Q19335
MINT:MINT-1044547 STRING:Q19335 PaxDb:Q19335
EnsemblMetazoa:F11A10.2 GeneID:178147 KEGG:cel:CELE_F11A10.2
UCSC:F11A10.2 CTD:178147 WormBase:F11A10.2 InParanoid:Q19335
NextBio:899914 Uniprot:Q19335
Length = 222
Score = 929 (332.1 bits), Expect = 2.7e-93, P = 2.7e-93
Identities = 169/215 (78%), Positives = 191/215 (88%)
Query: 1 MDYQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 60
MD+QNR GGKTG GGVAS +++ DRRERLRQLALETIDL KDPYFM+NH+G+YECKLCL
Sbjct: 1 MDFQNRAGGKTGSGGVASAADAGVDRRERLRQLALETIDLQKDPYFMRNHIGTYECKLCL 60
Query: 61 TLHNNEGSYLAHTQGKKHQANLARRAAKEAKDAPQQPAPEKPRVEPKKFVKIGRPGYRVT 120
TLHNNEGSYLAHTQGKKHQANLARRAAKE + P PAP+K VE KKFVKIGRPGY+VT
Sbjct: 61 TLHNNEGSYLAHTQGKKHQANLARRAAKEQSEQPFLPAPQKAAVETKKFVKIGRPGYKVT 120
Query: 121 KQRDPSNGQQSLLFQVDYPEIADDVFPRHRFMSAYEQRIEPPDRKWQYLLFAAEPYETIA 180
K+RDP GQQ+LLFQ+DYPEIAD + PRHRFMSAYEQ+I+PPD++WQYLLFAAEPYETI
Sbjct: 121 KERDPGAGQQALLFQIDYPEIADGIAPRHRFMSAYEQKIQPPDKRWQYLLFAAEPYETIG 180
Query: 181 FKVPSREVDKGDTKFWTHWNKDTKQFFLQFSFRNE 215
FK+PSREVDK + KFWT WNKDTKQFFLQ +F+ E
Sbjct: 181 FKIPSREVDKSE-KFWTMWNKDTKQFFLQVAFKLE 214
>UNIPROTKB|Q19335 [details] [associations]
symbol:repo-1 "Protein REPO-1" species:6239 "Caenorhabditis
elegans" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000690 InterPro:IPR003604 InterPro:IPR015880
InterPro:IPR019134 PROSITE:PS50171 SMART:SM00355 SMART:SM00451
SMART:SM01050 GO:GO:0005634 GO:GO:0009792 GO:GO:0002009
GO:GO:0006898 GO:GO:0040007 GO:GO:0018991 GO:GO:0002119
GO:GO:0046872 GO:GO:0008270 GO:GO:0071688 GO:GO:0040011
GO:GO:0003676 GO:GO:0040035 GO:GO:0007281 EMBL:Z68297
eggNOG:COG5246 GeneTree:ENSGT00670000097795 HOGENOM:HOG000191688
KO:K12826 OMA:KWQYLLF PIR:T20735 RefSeq:NP_502290.1
ProteinModelPortal:Q19335 DIP:DIP-26535N IntAct:Q19335
MINT:MINT-1044547 STRING:Q19335 PaxDb:Q19335
EnsemblMetazoa:F11A10.2 GeneID:178147 KEGG:cel:CELE_F11A10.2
UCSC:F11A10.2 CTD:178147 WormBase:F11A10.2 InParanoid:Q19335
NextBio:899914 Uniprot:Q19335
Length = 222
Score = 929 (332.1 bits), Expect = 2.7e-93, P = 2.7e-93
Identities = 169/215 (78%), Positives = 191/215 (88%)
Query: 1 MDYQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 60
MD+QNR GGKTG GGVAS +++ DRRERLRQLALETIDL KDPYFM+NH+G+YECKLCL
Sbjct: 1 MDFQNRAGGKTGSGGVASAADAGVDRRERLRQLALETIDLQKDPYFMRNHIGTYECKLCL 60
Query: 61 TLHNNEGSYLAHTQGKKHQANLARRAAKEAKDAPQQPAPEKPRVEPKKFVKIGRPGYRVT 120
TLHNNEGSYLAHTQGKKHQANLARRAAKE + P PAP+K VE KKFVKIGRPGY+VT
Sbjct: 61 TLHNNEGSYLAHTQGKKHQANLARRAAKEQSEQPFLPAPQKAAVETKKFVKIGRPGYKVT 120
Query: 121 KQRDPSNGQQSLLFQVDYPEIADDVFPRHRFMSAYEQRIEPPDRKWQYLLFAAEPYETIA 180
K+RDP GQQ+LLFQ+DYPEIAD + PRHRFMSAYEQ+I+PPD++WQYLLFAAEPYETI
Sbjct: 121 KERDPGAGQQALLFQIDYPEIADGIAPRHRFMSAYEQKIQPPDKRWQYLLFAAEPYETIG 180
Query: 181 FKVPSREVDKGDTKFWTHWNKDTKQFFLQFSFRNE 215
FK+PSREVDK + KFWT WNKDTKQFFLQ +F+ E
Sbjct: 181 FKIPSREVDKSE-KFWTMWNKDTKQFFLQVAFKLE 214
>UNIPROTKB|E2QXZ1 [details] [associations]
symbol:SF3A2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000690 InterPro:IPR003604
InterPro:IPR015880 InterPro:IPR019134 PROSITE:PS50171 SMART:SM00355
SMART:SM00451 SMART:SM01050 GO:GO:0005634 GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 GeneTree:ENSGT00670000097795
EMBL:AAEX03012610 Ensembl:ENSCAFT00000030867 Uniprot:E2QXZ1
Length = 463
Score = 877 (313.8 bits), Expect = 8.6e-88, P = 8.6e-88
Identities = 172/219 (78%), Positives = 184/219 (84%)
Query: 1 MDYQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 60
MD+Q+RPGGKTG GGVAS SESNRDRRERLRQLALETID+NKDPYFMKNHLGSYECKLCL
Sbjct: 1 MDFQHRPGGKTGSGGVASSSESNRDRRERLRQLALETIDINKDPYFMKNHLGSYECKLCL 60
Query: 61 TLHNNEGSYLAHTQGKKHQANLARRAAKEAKDAPQQPAPEKPRVEPKKFVKIGRPGYRVT 120
TLHNNEGSYLAHTQGKKHQ NLARRAAKEAK+AP QPAPEK +VE KKFVKIGRPGY+VT
Sbjct: 61 TLHNNEGSYLAHTQGKKHQTNLARRAAKEAKEAPAQPAPEKVKVEVKKFVKIGRPGYKVT 120
Query: 121 KQRDPSNGQQSLLFQVDYPEIADDVFPRHRFMSAYEQRIEPPDRKWQYLLFAAEPYETIA 180
KQRD GQQSLLFQ+DYPEIA+ + PRHRFMSAYEQRIEPPDR+WQYLL AAEPYETIA
Sbjct: 121 KQRDTEMGQQSLLFQIDYPEIAEGIMPRHRFMSAYEQRIEPPDRRWQYLLMAAEPYETIA 180
Query: 181 FKVPSREVDKGDTKFWTHWNKD----TKQFFLQFSFRNE 215
FKV V G T + QFFLQF F+ E
Sbjct: 181 FKV----VQAGSTDPRGQGPHSALCVSVQFFLQFHFKME 215
>TAIR|locus:2060279 [details] [associations]
symbol:AT2G32600 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0051604 "protein maturation"
evidence=RCA] InterPro:IPR000690 InterPro:IPR003604
InterPro:IPR015880 InterPro:IPR019134 PROSITE:PS50171 SMART:SM00355
SMART:SM00451 SMART:SM01050 GO:GO:0005634 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
EMBL:AC004681 eggNOG:COG5246 HOGENOM:HOG000191688 KO:K12826
OMA:KWQYLLF EMBL:AY052725 EMBL:AY098956 IPI:IPI00525943 PIR:T02559
RefSeq:NP_565747.1 UniGene:At.12771 ProteinModelPortal:O80897
SMR:O80897 STRING:O80897 PaxDb:O80897 PRIDE:O80897
EnsemblPlants:AT2G32600.1 GeneID:817820 KEGG:ath:AT2G32600
TAIR:At2g32600 InParanoid:O80897 PhylomeDB:O80897
ProtClustDB:CLSN2688636 ArrayExpress:O80897 Genevestigator:O80897
Uniprot:O80897
Length = 277
Score = 773 (277.2 bits), Expect = 9.0e-77, P = 9.0e-77
Identities = 143/206 (69%), Positives = 168/206 (81%)
Query: 8 GGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCLTLHNNEG 67
G K G GG AS DRRERLR+LALETIDL KDPYFM+NHLGSYECKLCLTLHNNEG
Sbjct: 6 GSKPGSGGAASGQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEG 65
Query: 68 SYLAHTQGKKHQANLARRAAKEAKDAPQQPAPEKPRVEPKKFVKIGRPGYRVTKQRDPSN 127
+YLAHTQGK+HQ NLA+RAA+EAKDAP +P P K V ++ VKIGRPGYRVTKQ DP
Sbjct: 66 NYLAHTQGKRHQTNLAKRAAREAKDAPTKPQPLKRNVSVRRTVKIGRPGYRVTKQYDPEL 125
Query: 128 GQQSLLFQVDYPEIADDVFPRHRFMSAYEQRIEPPDRKWQYLLFAAEPYETIAFKVPSRE 187
Q+SLLFQ++YPEI D++ PRHRFMS+YEQ+++P D+ +QYLLFAAEPYE IAFKVPS E
Sbjct: 126 QQRSLLFQIEYPEIEDNIKPRHRFMSSYEQKVQPYDKSYQYLLFAAEPYEIIAFKVPSTE 185
Query: 188 VDKGDTKFWTHWNKDTKQFFLQFSFR 213
VDK KF++HW+ D+K F LQ F+
Sbjct: 186 VDKSTPKFFSHWDPDSKMFTLQVYFK 211
>ASPGD|ASPL0000030386 [details] [associations]
symbol:AN5530 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000690 InterPro:IPR003604
InterPro:IPR015880 InterPro:IPR019134 PROSITE:PS50171 SMART:SM00355
SMART:SM00451 SMART:SM01050 GO:GO:0005634 GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 EMBL:BN001305 EMBL:AACD01000094
eggNOG:COG5246 HOGENOM:HOG000191688 KO:K12826 OrthoDB:EOG441TMX
OMA:KWQYLLF RefSeq:XP_663134.1 STRING:Q5B1Q0
EnsemblFungi:CADANIAT00003552 GeneID:2871823 KEGG:ani:AN5530.2
Uniprot:Q5B1Q0
Length = 237
Score = 695 (249.7 bits), Expect = 1.7e-68, P = 1.7e-68
Identities = 131/220 (59%), Positives = 171/220 (77%)
Query: 1 MDYQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 60
MDYQNR G K GGGGVAS S +N DRRERLR+LALETIDL+KDPYF KNH+GS+EC+LCL
Sbjct: 1 MDYQNRAGSKFGGGGVASHSATNADRRERLRKLALETIDLDKDPYFFKNHVGSFECRLCL 60
Query: 61 TLHNNEGSYLAHTQGKKHQANLARRAAKEAKDAPQ-QPA--PEKPRVEPKK-FVKIGRPG 116
T+H N+GSYLAHTQG+KHQ NLARRAA+E ++ PA P V+ +K +KIGRPG
Sbjct: 61 TVHQNDGSYLAHTQGRKHQTNLARRAAREQREGKNADPASLPGAMGVQVRKQTIKIGRPG 120
Query: 117 YRVTKQRDPSNGQQSLLFQVDYPEIADDVFPRHRFMSAYEQRIE-PPDRKWQYLLFAAEP 175
Y++TK RDP Q LLFQ+ Y EI V PR RFMSA+EQ++E PPD+ +QYL+ AAEP
Sbjct: 121 YKITKIRDPLTRQFGLLFQLQYQEITPGVKPRVRFMSAFEQKVEEPPDKNFQYLVIAAEP 180
Query: 176 YETIAFKVPSREVDKGDTKFWTHWNKDTKQFFLQFSFRNE 215
Y+T FK+ +RE+D+ + ++WT +++D+K+F++Q F+ E
Sbjct: 181 YQTCGFKLQAREIDRREGRYWTWFDEDSKEFWVQIMFKTE 220
>UNIPROTKB|F1NDG0 [details] [associations]
symbol:AMH "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000690 InterPro:IPR003604
InterPro:IPR015880 InterPro:IPR019134 PROSITE:PS50171 SMART:SM00355
SMART:SM00451 SMART:SM01050 GO:GO:0005634 GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 GeneTree:ENSGT00390000006337
EMBL:AADN02041674 EMBL:AADN02066744 EMBL:AADN02066745
EMBL:AADN02041672 EMBL:AADN02041673 EMBL:AADN02066746
EMBL:AADN02066747 EMBL:AADN02066748 IPI:IPI00584809
Ensembl:ENSGALT00000001207 Uniprot:F1NDG0
Length = 141
Score = 688 (247.2 bits), Expect = 9.2e-68, P = 9.2e-68
Identities = 125/141 (88%), Positives = 132/141 (93%)
Query: 43 DPYFMKNHLGSYECKLCLTLHNNEGSYLAHTQGKKHQANLARRAAKEAKDAPQQPAPEKP 102
DPYFMKNHLGSYECKLCLTLHNNEGSYLAHTQGKKHQ NLARRAAKEAK+AP QPAPEK
Sbjct: 1 DPYFMKNHLGSYECKLCLTLHNNEGSYLAHTQGKKHQTNLARRAAKEAKEAPAQPAPEKV 60
Query: 103 RVEPKKFVKIGRPGYRVTKQRDPSNGQQSLLFQVDYPEIADDVFPRHRFMSAYEQRIEPP 162
+VE KKFVKIGRPGY+VTKQRDP GQQSLLFQ+DYPEIA+ + PRHRFMSAYEQRIEPP
Sbjct: 61 KVEVKKFVKIGRPGYKVTKQRDPETGQQSLLFQIDYPEIAESIMPRHRFMSAYEQRIEPP 120
Query: 163 DRKWQYLLFAAEPYETIAFKV 183
DR+WQYLL AAEPYETIAFKV
Sbjct: 121 DRRWQYLLMAAEPYETIAFKV 141
>UNIPROTKB|F1NUL0 [details] [associations]
symbol:AMH "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000690 InterPro:IPR003604
InterPro:IPR015880 InterPro:IPR019134 PROSITE:PS50171 SMART:SM00355
SMART:SM00451 SMART:SM01050 GO:GO:0005634 GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 GeneTree:ENSGT00390000006337
EMBL:AADN02041674 EMBL:AADN02066744 EMBL:AADN02066745
EMBL:AADN02041672 EMBL:AADN02041673 EMBL:AADN02066746
EMBL:AADN02066747 EMBL:AADN02066748 IPI:IPI00820760
Ensembl:ENSGALT00000041217 Uniprot:F1NUL0
Length = 329
Score = 688 (247.2 bits), Expect = 9.2e-68, P = 9.2e-68
Identities = 125/141 (88%), Positives = 132/141 (93%)
Query: 43 DPYFMKNHLGSYECKLCLTLHNNEGSYLAHTQGKKHQANLARRAAKEAKDAPQQPAPEKP 102
DPYFMKNHLGSYECKLCLTLHNNEGSYLAHTQGKKHQ NLARRAAKEAK+AP QPAPEK
Sbjct: 1 DPYFMKNHLGSYECKLCLTLHNNEGSYLAHTQGKKHQTNLARRAAKEAKEAPAQPAPEKV 60
Query: 103 RVEPKKFVKIGRPGYRVTKQRDPSNGQQSLLFQVDYPEIADDVFPRHRFMSAYEQRIEPP 162
+VE KKFVKIGRPGY+VTKQRDP GQQSLLFQ+DYPEIA+ + PRHRFMSAYEQRIEPP
Sbjct: 61 KVEVKKFVKIGRPGYKVTKQRDPETGQQSLLFQIDYPEIAESIMPRHRFMSAYEQRIEPP 120
Query: 163 DRKWQYLLFAAEPYETIAFKV 183
DR+WQYLL AAEPYETIAFKV
Sbjct: 121 DRRWQYLLMAAEPYETIAFKV 141
>UNIPROTKB|G4MKX4 [details] [associations]
symbol:MGG_05375 "Splicing factor 3a subunit 2"
species:242507 "Magnaporthe oryzae 70-15" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000690
InterPro:IPR003604 InterPro:IPR015880 InterPro:IPR019134
PROSITE:PS50171 SMART:SM00355 SMART:SM00451 SMART:SM01050
GO:GO:0005634 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
EMBL:CM001231 KO:K12826 RefSeq:XP_003710221.1
EnsemblFungi:MGG_05375T0 GeneID:2675831 KEGG:mgr:MGG_05375
Uniprot:G4MKX4
Length = 247
Score = 378 (138.1 bits), Expect = 4.8e-66, Sum P(2) = 4.8e-66
Identities = 69/92 (75%), Positives = 80/92 (86%)
Query: 1 MDYQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 60
MDYQNR G K GGGGVAS S +N DRRERLR+LALE IDL+KDPY KNHLG++EC+LCL
Sbjct: 1 MDYQNRAGSKFGGGGVASHSATNADRRERLRKLALEHIDLDKDPYIFKNHLGAFECRLCL 60
Query: 61 TLHNNEGSYLAHTQGKKHQANLARRAAKEAKD 92
T+H N+GSYLAHTQG+KHQ NLARRAA+E +D
Sbjct: 61 TVHQNDGSYLAHTQGRKHQTNLARRAAQEKRD 92
Score = 312 (114.9 bits), Expect = 4.8e-66, Sum P(2) = 4.8e-66
Identities = 55/109 (50%), Positives = 78/109 (71%)
Query: 107 KKFVKIGRPGYRVTKQRDPSNGQQSLLFQVDYPEIADDVFPRHRFMSAYEQRIEPPDRKW 166
K VKIGRPGY++TK RDP + LLFQ+ +P+I+ P+ + MSA+ QR+E PDR +
Sbjct: 124 KNAVKIGRPGYKITKIRDPVTRAEGLLFQLQFPDISPGTVPKWQVMSAFSQRVEEPDRNY 183
Query: 167 QYLLFAAEPYETIAFKVPSREVDKGDTKFWTHWNKDTKQFFLQFSFRNE 215
QYLL AAEPYET FKVP+RE+DK + + + +W+ D K++++Q F E
Sbjct: 184 QYLLVAAEPYETCGFKVPARELDKREGRMFEYWDPDAKEYWVQVMFMTE 232
>DICTYBASE|DDB_G0293876 [details] [associations]
symbol:sf3a2 "splicing factor 3A subunit 2"
species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030532 "small
nuclear ribonucleoprotein complex" evidence=ISS] [GO:0008380 "RNA
splicing" evidence=IEA;ISS] [GO:0005681 "spliceosomal complex"
evidence=IEA;ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISS] [GO:0000389 "mRNA 3'-splice site recognition"
evidence=ISS] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR003604 InterPro:IPR015880
InterPro:IPR019134 Pfam:PF09732 PROSITE:PS50171 SMART:SM00355
SMART:SM00451 SMART:SM01050 dictyBase:DDB_G0293876
GenomeReviews:CM000155_GR GO:GO:0046872 GO:GO:0008270 GO:GO:0005681
GO:GO:0003676 EMBL:AAFI02000223 GO:GO:0030532 GO:GO:0000389
eggNOG:COG5246 KO:K12826 RefSeq:XP_628923.1 STRING:Q54B65
EnsemblProtists:DDB0233181 GeneID:8629465 KEGG:ddi:DDB_G0293876
OMA:KWQYLLF ProtClustDB:CLSZ2429171 Uniprot:Q54B65
Length = 215
Score = 659 (237.0 bits), Expect = 1.1e-64, P = 1.1e-64
Identities = 125/211 (59%), Positives = 160/211 (75%)
Query: 9 GKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCLTLHNNEGS 68
GK G GG+ S N DRRER +QL LE +D++KDPY + NH+GS+EC+LCLT+HNN G+
Sbjct: 5 GKAGSGGLQSSQYDNIDRRERQKQLVLEHVDVSKDPYIISNHIGSFECRLCLTVHNNVGN 64
Query: 69 YLAHTQGKKHQANLARRAAKEAKDAPQQPAP---EKPRVEPKKFVKIGRPGYRVTKQRDP 125
YLAHTQGKKHQ +LARRAAKE ++ P + RV KK +KIGRPGY++ KQRD
Sbjct: 65 YLAHTQGKKHQTHLARRAAKEQRENPSVSKNNYIQTTRVIHKKTIKIGRPGYKIIKQRDS 124
Query: 126 SNGQQSLLFQVDYPEIADDVFPRHRFMSAYEQRIEPPDRKWQYLLFAAEPYETIAFKVPS 185
GQ SLLFQ+DYPEI + PRHR MSA+EQR+E P++ +QYLLFAAEPYETIAFK+P+
Sbjct: 125 KTGQLSLLFQIDYPEIESGLQPRHRIMSAFEQRVEQPNKDYQYLLFAAEPYETIAFKIPN 184
Query: 186 REVDK--G-DTKFWTHWNKDTKQFFLQFSFR 213
+E+D+ G D KF+THW+++ K F LQ F+
Sbjct: 185 KEIDRTTGPDGKFFTHWDRN-KTFTLQLYFK 214
>UNIPROTKB|K7EKV8 [details] [associations]
symbol:SF3A2 "Splicing factor 3A subunit 2" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000690 InterPro:IPR003604
InterPro:IPR015880 PROSITE:PS50171 SMART:SM00355 SMART:SM00451
EMBL:CH471139 EMBL:AC005263 HGNC:HGNC:10766 Ensembl:ENST00000592314
Uniprot:K7EKV8
Length = 162
Score = 638 (229.6 bits), Expect = 1.8e-62, P = 1.8e-62
Identities = 121/136 (88%), Positives = 127/136 (93%)
Query: 1 MDYQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 60
MD+Q+RPGGKTG GGVAS SESNRDRRERLRQLALETID+NKDPYFMKNHLGSYECKLCL
Sbjct: 1 MDFQHRPGGKTGSGGVASSSESNRDRRERLRQLALETIDINKDPYFMKNHLGSYECKLCL 60
Query: 61 TLHNNEGSYLAHTQGKKHQANLARRAAKEAKDAPQQPAPEKPRVEPKKFVKIGRPGYRVT 120
TLHNNEGSYLAHTQGKKHQ NLARRAAKEAK+AP QPAPEK +VE KKFVKIGRPGY+VT
Sbjct: 61 TLHNNEGSYLAHTQGKKHQTNLARRAAKEAKEAPAQPAPEKVKVEVKKFVKIGRPGYKVT 120
Query: 121 KQRDPSNGQQSLLFQV 136
KQRD GQQSLLFQV
Sbjct: 121 KQRDSEMGQQSLLFQV 136
>UNIPROTKB|K7EMT0 [details] [associations]
symbol:SF3A2 "Splicing factor 3A subunit 2" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000690 InterPro:IPR003604
InterPro:IPR015880 PROSITE:PS50171 SMART:SM00355 SMART:SM00451
EMBL:AC005263 HGNC:HGNC:10766 Ensembl:ENST00000586396
Uniprot:K7EMT0
Length = 136
Score = 638 (229.6 bits), Expect = 1.8e-62, P = 1.8e-62
Identities = 121/136 (88%), Positives = 127/136 (93%)
Query: 1 MDYQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 60
MD+Q+RPGGKTG GGVAS SESNRDRRERLRQLALETID+NKDPYFMKNHLGSYECKLCL
Sbjct: 1 MDFQHRPGGKTGSGGVASSSESNRDRRERLRQLALETIDINKDPYFMKNHLGSYECKLCL 60
Query: 61 TLHNNEGSYLAHTQGKKHQANLARRAAKEAKDAPQQPAPEKPRVEPKKFVKIGRPGYRVT 120
TLHNNEGSYLAHTQGKKHQ NLARRAAKEAK+AP QPAPEK +VE KKFVKIGRPGY+VT
Sbjct: 61 TLHNNEGSYLAHTQGKKHQTNLARRAAKEAKEAPAQPAPEKVKVEVKKFVKIGRPGYKVT 120
Query: 121 KQRDPSNGQQSLLFQV 136
KQRD GQQSLLFQV
Sbjct: 121 KQRDSEMGQQSLLFQV 136
>UNIPROTKB|K7EP23 [details] [associations]
symbol:SF3A2 "Splicing factor 3A subunit 2" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000690 InterPro:IPR003604
InterPro:IPR015880 PROSITE:PS50171 SMART:SM00355 SMART:SM00451
EMBL:AC005263 HGNC:HGNC:10766 Ensembl:ENST00000591121
Uniprot:K7EP23
Length = 135
Score = 634 (228.2 bits), Expect = 4.8e-62, P = 4.8e-62
Identities = 120/135 (88%), Positives = 126/135 (93%)
Query: 1 MDYQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 60
MD+Q+RPGGKTG GGVAS SESNRDRRERLRQLALETID+NKDPYFMKNHLGSYECKLCL
Sbjct: 1 MDFQHRPGGKTGSGGVASSSESNRDRRERLRQLALETIDINKDPYFMKNHLGSYECKLCL 60
Query: 61 TLHNNEGSYLAHTQGKKHQANLARRAAKEAKDAPQQPAPEKPRVEPKKFVKIGRPGYRVT 120
TLHNNEGSYLAHTQGKKHQ NLARRAAKEAK+AP QPAPEK +VE KKFVKIGRPGY+VT
Sbjct: 61 TLHNNEGSYLAHTQGKKHQTNLARRAAKEAKEAPAQPAPEKVKVEVKKFVKIGRPGYKVT 120
Query: 121 KQRDPSNGQQSLLFQ 135
KQRD GQQSLLFQ
Sbjct: 121 KQRDSEMGQQSLLFQ 135
>POMBASE|SPBC21C3.05 [details] [associations]
symbol:sap62 "zinc finger protein Sap62" species:4896
"Schizosaccharomyces pombe" [GO:0000245 "spliceosomal complex
assembly" evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0005686 "U2 snRNP" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000690 InterPro:IPR003604
InterPro:IPR015880 InterPro:IPR019134 Pfam:PF09732 PROSITE:PS50171
SMART:SM00355 SMART:SM00451 SMART:SM01050 PomBase:SPBC21C3.05
GO:GO:0005829 GO:GO:0046872 EMBL:CU329671 GO:GO:0008270
GenomeReviews:CU329671_GR GO:GO:0005681 GO:GO:0003723 GO:GO:0000245
GO:GO:0005686 eggNOG:COG5246 HOGENOM:HOG000191688 KO:K12826
OrthoDB:EOG441TMX PIR:T50349 RefSeq:NP_596585.1 IntAct:Q9P7L8
STRING:Q9P7L8 EnsemblFungi:SPBC21C3.05.1 GeneID:2540622
KEGG:spo:SPBC21C3.05 OMA:STSEAYW NextBio:20801747 Uniprot:Q9P7L8
Length = 217
Score = 633 (227.9 bits), Expect = 6.2e-62, P = 6.2e-62
Identities = 128/216 (59%), Positives = 159/216 (73%)
Query: 1 MDYQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 60
MDYQNR G + GGGGVA + E+N RRERLR+LALETIDL+KDPY MKNHLG++EC+LCL
Sbjct: 1 MDYQNRAGVRFGGGGVAGYQETNAARRERLRKLALETIDLSKDPYLMKNHLGTFECRLCL 60
Query: 61 TLHNNEGSYLAHTQGKKHQANLARRAAKEAKDAPQQPAPE------KPRVEPKK-FVKIG 113
T H NE SYL HTQGKKHQ NLARR A E K + Q+ AP+ + V+ KK VKIG
Sbjct: 61 TTHANENSYLTHTQGKKHQTNLARRQALENKKS-QENAPQVLLGISQSHVQVKKSVVKIG 119
Query: 114 RPGYRVTKQRDPSNGQQSLLFQVDYPEIADDVFPRHRFMSAYEQRIEPPDRKWQYLLFAA 173
RPGY+V+K R+ +G+ L FQ+ YP+I + PR+R MSAYEQR+E PDRK+QYL+ AA
Sbjct: 120 RPGYKVSKIREAESGKFGLRFQIKYPDIEVNAKPRYRIMSAYEQRVEAPDRKFQYLVVAA 179
Query: 174 EPYETIAFKVPSREVDKGDTKFWTHWNKDTK--QFF 207
EPYE+IAFK+ D+ KFW++W+ T QFF
Sbjct: 180 EPYESIAFKI-----DRAPGKFWSYWDAPTYTIQFF 210
>GENEDB_PFALCIPARUM|PFF0970w [details] [associations]
symbol:PFF0970w "splicing factor 3a subunit,
putative" species:5833 "Plasmodium falciparum" [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=ISS] InterPro:IPR000690 InterPro:IPR003604
InterPro:IPR019134 PROSITE:PS50171 SMART:SM00451 SMART:SM01050
GO:GO:0008380 GO:GO:0046872 GO:GO:0008270 GO:GO:0005681
GO:GO:0003676 EMBL:AL844505 HOGENOM:HOG000191688 KO:K12826
ProtClustDB:CLSZ2429171 RefSeq:XP_966185.1
ProteinModelPortal:C6KT39 EnsemblProtists:PFF0970w:mRNA
GeneID:3885948 KEGG:pfa:PFF0970w EuPathDB:PlasmoDB:PF3D7_0619900
OMA:EFREENI Uniprot:C6KT39
Length = 233
Score = 613 (220.8 bits), Expect = 8.1e-60, P = 8.1e-60
Identities = 117/214 (54%), Positives = 154/214 (71%)
Query: 1 MDYQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 60
MD+QNR G KTG G S + N++RRERL+QLALE ID+ KDPY +KN++G +ECKLCL
Sbjct: 1 MDFQNRVGHKTGSGMPLSREDINQERRERLKQLALENIDITKDPYILKNNVGMFECKLCL 60
Query: 61 TLHNNEGSYLAHTQGKKHQANLARRAAKEAKDAPQQPAPEKPRVEPKKFVKIGRPGYRVT 120
TLHNNE SYL HTQGKKHQ NLA+R KE + KP EP+K VKIG+P Y VT
Sbjct: 61 TLHNNESSYLCHTQGKKHQMNLAQRLLKEKNEMTTNRL-NKPVSEPRKIVKIGKPRYDVT 119
Query: 121 KQRDPSNGQQSLLFQVDYPEIADDVFPRHRFMSAYEQRIEPPDRKWQYLLFAAEPYETIA 180
+ R+ N Q +LF++ +P I ++ P+ RFMS++EQ+IE PD+K+QYLLFAAEPYETIA
Sbjct: 120 RVRNKKN-QLGILFELSFPNIKENTKPKFRFMSSFEQKIEAPDKKYQYLLFAAEPYETIA 178
Query: 181 FKVPSREVDKGDTKFWTHWNKDTKQFFLQFSFRN 214
FK+P+ ++D+ + F+ W K F +Q F+N
Sbjct: 179 FKIPNIDIDENEG-FYYKWFDKKKIFVMQIHFQN 211
>UNIPROTKB|C6KT39 [details] [associations]
symbol:PFF0970w "Splicing factor 3a subunit, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0005681 "spliceosomal
complex" evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS]
InterPro:IPR000690 InterPro:IPR003604 InterPro:IPR019134
PROSITE:PS50171 SMART:SM00451 SMART:SM01050 GO:GO:0008380
GO:GO:0046872 GO:GO:0008270 GO:GO:0005681 GO:GO:0003676
EMBL:AL844505 HOGENOM:HOG000191688 KO:K12826
ProtClustDB:CLSZ2429171 RefSeq:XP_966185.1
ProteinModelPortal:C6KT39 EnsemblProtists:PFF0970w:mRNA
GeneID:3885948 KEGG:pfa:PFF0970w EuPathDB:PlasmoDB:PF3D7_0619900
OMA:EFREENI Uniprot:C6KT39
Length = 233
Score = 613 (220.8 bits), Expect = 8.1e-60, P = 8.1e-60
Identities = 117/214 (54%), Positives = 154/214 (71%)
Query: 1 MDYQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 60
MD+QNR G KTG G S + N++RRERL+QLALE ID+ KDPY +KN++G +ECKLCL
Sbjct: 1 MDFQNRVGHKTGSGMPLSREDINQERRERLKQLALENIDITKDPYILKNNVGMFECKLCL 60
Query: 61 TLHNNEGSYLAHTQGKKHQANLARRAAKEAKDAPQQPAPEKPRVEPKKFVKIGRPGYRVT 120
TLHNNE SYL HTQGKKHQ NLA+R KE + KP EP+K VKIG+P Y VT
Sbjct: 61 TLHNNESSYLCHTQGKKHQMNLAQRLLKEKNEMTTNRL-NKPVSEPRKIVKIGKPRYDVT 119
Query: 121 KQRDPSNGQQSLLFQVDYPEIADDVFPRHRFMSAYEQRIEPPDRKWQYLLFAAEPYETIA 180
+ R+ N Q +LF++ +P I ++ P+ RFMS++EQ+IE PD+K+QYLLFAAEPYETIA
Sbjct: 120 RVRNKKN-QLGILFELSFPNIKENTKPKFRFMSSFEQKIEAPDKKYQYLLFAAEPYETIA 178
Query: 181 FKVPSREVDKGDTKFWTHWNKDTKQFFLQFSFRN 214
FK+P+ ++D+ + F+ W K F +Q F+N
Sbjct: 179 FKIPNIDIDENEG-FYYKWFDKKKIFVMQIHFQN 211
>CGD|CAL0004398 [details] [associations]
symbol:orf19.4724 species:5476 "Candida albicans" [GO:0071004
"U2-type prespliceosome" evidence=IEA] [GO:0000245 "spliceosomal
complex assembly" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR015880 SMART:SM00355 CGD:CAL0004398
GO:GO:0008270 GO:GO:0005622 EMBL:AACQ01000001 EMBL:AACQ01000002
eggNOG:COG5246 KO:K12826 RefSeq:XP_723221.1 RefSeq:XP_723411.1
STRING:Q5APP1 GeneID:3634931 GeneID:3634956 KEGG:cal:CaO19.12187
KEGG:cal:CaO19.4724 Uniprot:Q5APP1
Length = 256
Score = 302 (111.4 bits), Expect = 1.2e-39, Sum P(2) = 1.2e-39
Identities = 64/164 (39%), Positives = 92/164 (56%)
Query: 1 MDYQNRPGGKTGGGGVASWSESNRDRRERLRQL-ALETIDLNKDPYFMKNHLGSYECKLC 59
MDY R K G GG+AS + N ++R+++L + +D++ DPY +NHLG ECKLC
Sbjct: 1 MDYSGRVNSKKGAGGIASNEDINIQTKQRVQELLSTHVLDIDNDPYVFRNHLGMLECKLC 60
Query: 60 LTLHNNEGSYLAHTQGKKHQANLARRAA---KEAKDAPQQPAPEK----PRVEPKKFVKI 112
LT H NE SY++H G+KH NL RR K+ K Q + + +E + + KI
Sbjct: 61 LTTHINESSYISHLGGRKHHLNLERRRILDEKQNKSREHQLSSQNILSINNIEKRSWKKI 120
Query: 113 GRPGYRVTKQRDPSNGQQSLLFQVDYPEIADDVFPRHRFMSAYE 156
G+P Y++TK RDP + +L + P+I P R MS YE
Sbjct: 121 GKPIYKITKVRDPETLRTGILVNIKLPKITVKE-PMFRIMSYYE 163
Score = 137 (53.3 bits), Expect = 1.2e-39, Sum P(2) = 1.2e-39
Identities = 26/58 (44%), Positives = 41/58 (70%)
Query: 163 DRKWQYLLFAAEPYETIAFKVPSR-EVDKG--DTK----FWTHWNKDTKQFFLQFSFR 213
D K+QYL+ +AEPY+ IA +P++ E+DK + K +W +W+ DTK+FFLQF ++
Sbjct: 198 DNKYQYLVVSAEPYDNIAIVIPNKHEIDKPLEENKMSDSYWWYWDNDTKEFFLQFLYK 255
>SGD|S000002201 [details] [associations]
symbol:PRP11 "Subunit of the SF3a splicing factor complex"
species:4932 "Saccharomyces cerevisiae" [GO:0005686 "U2 snRNP"
evidence=TAS] [GO:0000245 "spliceosomal complex assembly"
evidence=IDA] [GO:0071004 "U2-type prespliceosome" evidence=IDA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IDA] InterPro:IPR003604 InterPro:IPR015880
PROSITE:PS50171 SMART:SM00355 SMART:SM00451 SGD:S000002201
GO:GO:0046872 GO:GO:0008270 EMBL:BK006938 GO:GO:0003723 EMBL:Z71781
GO:GO:0000245 GO:GO:0005686 GO:GO:0071004 EMBL:Z74091 PIR:S67576
RefSeq:NP_010241.1 PDB:4DGW PDBsum:4DGW ProteinModelPortal:Q07350
SMR:Q07350 DIP:DIP-1001N IntAct:Q07350 MINT:MINT-383970
STRING:Q07350 PaxDb:Q07350 PeptideAtlas:Q07350 EnsemblFungi:YDL043C
GeneID:851518 KEGG:sce:YDL043C CYGD:YDL043c eggNOG:COG5246
GeneTree:ENSGT00670000097795 HOGENOM:HOG000191688 KO:K12826
OMA:SNPYIYK OrthoDB:EOG441TMX NextBio:968893 Genevestigator:Q07350
GermOnline:YDL043C Uniprot:Q07350
Length = 266
Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
Identities = 51/159 (32%), Positives = 72/159 (45%)
Query: 1 MDYQNRPGGKTGGGGVASWSESNRDRRERLRQLALE------TIDLNKD------PYFMK 48
M+Y G K GGGG+AS S+ N RR+ + L + T KD PY K
Sbjct: 1 MNYLEGVGSKKGGGGIASESQFNLQRRKEVESLLSKGENVPYTFQDEKDDQVRSNPYIYK 60
Query: 49 NHLGSYECKLCLTLHNNEGSYLAHTQGKKHQANLARRAAKEAKDAPQQPAP-------EK 101
NH G CKLC T+H + S H GKKH N+ RR K + + ++
Sbjct: 61 NHSGKLVCKLCNTMHMSWSSVERHLGGKKHGLNVLRRGISIEKSSLGREGQTTHDFRQQQ 120
Query: 102 PRVEPKKFVKIGR--PGYRVTKQRDPSNGQQSLLFQVDY 138
+E K+ +K P ++ ++P NG L QV+Y
Sbjct: 121 KIIEAKQSLKNNGTIPVCKIATVKNPKNGSVGLAIQVNY 159
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.134 0.412 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 286 225 0.00077 113 3 11 22 0.42 33
32 0.41 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 24
No. of states in DFA: 599 (64 KB)
Total size of DFA: 204 KB (2114 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 24.42u 0.12s 24.54t Elapsed: 00:00:02
Total cpu time: 24.42u 0.12s 24.54t Elapsed: 00:00:02
Start: Thu Aug 15 16:52:55 2013 End: Thu Aug 15 16:52:57 2013