RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1344
(286 letters)
>gnl|CDD|227571 COG5246, PRP11, Splicing factor 3a, subunit 2 [RNA processing and
modification].
Length = 222
Score = 233 bits (594), Expect = 8e-77
Identities = 86/228 (37%), Positives = 125/228 (54%), Gaps = 15/228 (6%)
Query: 1 MDYQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 60
M+Y R G KTGGGG AS + N+ RR R L DL DPY KNH G Y C LC
Sbjct: 1 MNYGGRGGSKTGGGGTASEIKKNKKRRSRQLLLEAYGQDLMDDPYLSKNHTGKYVCLLCK 60
Query: 61 TLHNNEGSYLAHTQGKKHQANLARRAAKEAKDAPQ-QPA----PEKPRVEPKK-FVKIGR 114
T H E SY+ H +GKKH+ N +RR+ +++ + Q ++ +E K+ + G
Sbjct: 61 TKHLTEMSYVKHREGKKHKENSSRRSEEKSSLGRENQTTHDFRQQQKIIEAKQSLKRSGI 120
Query: 115 PGYRVTKQRDPSNGQQSLLFQVDYPEIADDVFPRHRFMSAYEQRIEPPDRKWQYLLFAAE 174
P Y+V +P G++ L QV+Y + + P++R +S+ EQ +E D ++YL+FA E
Sbjct: 121 PSYKVRSLVEPKGGRRGLGIQVNYEDDLAEEMPQYRIVSSLEQNVEEYDESFRYLVFACE 180
Query: 175 PYETIAFKVPSREVDKGDTKFW---THWNKDTKQFFLQFSFRNESKPS 219
PYE IAFK ++E+D F W+ +T + LQF F E+ P
Sbjct: 181 PYENIAFKFENKEID-----FLSIYEDWDAETGTYTLQFFF-LEAGPE 222
>gnl|CDD|214996 smart01050, CactinC_cactus, Cactus-binding C-terminus of cactin
protein. CactinC_cactus is the C-terminal 200 residues
of the cactin protein which are necessary for the
association of cactin with IkappaB-cactus as one of the
intracellular members of the Rel complex. The Rel
(NF-kappaB) pathway is conserved in invertebrates and
vertebrates. In mammals, it controls the activities of
the immune and inflammatory response genes as well as
viral genes, and is critical for cell growth and
survival. In Drosophila, the Rel pathway functions in
the innate cellular and humoral immune response, in
muscle development, and in the establishment of
dorsal-ventral polarity in the early embryo. Most
members of the family also have a Cactin_mid domain
further upstream.
Length = 129
Score = 114 bits (287), Expect = 7e-32
Identities = 37/122 (30%), Positives = 51/122 (41%), Gaps = 10/122 (8%)
Query: 99 PEKPRVEPKKFVKIGRPGYRVTK---QRDPSNGQQSLLFQVDYPEIAD-DVFPRHRFMSA 154
KPR + Y T P Q F + YP++ D PR+R S+
Sbjct: 7 LRKPRYFNRVKTGYDWNKYNQTHYDNDNPPPKIVQGYKFNIFYPDLIDKGKAPRYRIESS 66
Query: 155 YEQRIEPPDRKWQYLLF-AAEPYETIAFKVPSREVDKGDTK-FWTHWNKDTKQFFLQFSF 212
+E E PD L F A PYE IAFK+ +RE D F + ++ LQF+F
Sbjct: 67 FEI--EKPDDDTCLLRFSAGPPYEDIAFKIVNREWDYSHRGGFKSSFDN--GILQLQFNF 122
Query: 213 RN 214
+
Sbjct: 123 KK 124
>gnl|CDD|197732 smart00451, ZnF_U1, U1-like zinc finger. Family of C2H2-type
zinc fingers, present in matrin, U1 small nuclear
ribonucleoprotein C and other RNA-binding proteins.
Length = 35
Score = 52.3 bits (126), Expect = 1e-09
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 52 GSYECKLCLTLHNNEGSYLAHTQGKKHQANLARR 85
G + CKLC +E S AH +GKKH+ N+ +R
Sbjct: 2 GGFYCKLCNVTFTDEISVEAHLKGKKHKKNVKKR 35
>gnl|CDD|205121 pfam12874, zf-met, Zinc-finger of C2H2 type. This is a
zinc-finger domain with the CxxCx(12)Hx(6)H motif,
found in multiple copies in a wide range of proteins
from plants to metazoans. Some member proteins,
particularly those from plants, are annotated as being
RNA-binding.
Length = 25
Score = 44.4 bits (106), Expect = 7e-07
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 54 YECKLCLTLHNNEGSYLAHTQGKKH 78
+ C+LC +E +H +GKKH
Sbjct: 1 FYCELCNVTFTSESQLKSHLRGKKH 25
>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein.
Length = 753
Score = 46.3 bits (110), Expect = 9e-06
Identities = 21/65 (32%), Positives = 23/65 (35%), Gaps = 1/65 (1%)
Query: 221 RPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPP 280
R P A L P P PP G PPPP L P P + + PP
Sbjct: 679 RGDPVRPTAHHAALRAPQAPRPGGPPGGGGGLPPPPDL-PAAAGPAPCGSSLIASPTAPP 737
Query: 281 PPPPP 285
P PP
Sbjct: 738 EPEPP 742
Score = 36.3 bits (84), Expect = 0.019
Identities = 10/64 (15%), Positives = 12/64 (18%), Gaps = 2/64 (3%)
Query: 220 FRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMP 279
+P LPPPP P P + P P
Sbjct: 690 AALRAPQAPRPGGPPGGGGGLPPPPDLPAAAGPAPCGS--SLIASPTAPPEPEPPGAEQA 747
Query: 280 PPPP 283
Sbjct: 748 DGAE 751
Score = 30.9 bits (70), Expect = 0.94
Identities = 15/68 (22%), Positives = 19/68 (27%), Gaps = 5/68 (7%)
Query: 223 PPSPSPAIRNNLPPPPMLP---PPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPT--LA 277
+ P P +P P G P P + P G P
Sbjct: 650 RGGEAGGPGVPGPVPVGMPAHTARPSRVARGDPVRPTAHHAALRAPQAPRPGGPPGGGGG 709
Query: 278 MPPPPPPP 285
+PPPP P
Sbjct: 710 LPPPPDLP 717
Score = 29.8 bits (67), Expect = 1.9
Identities = 18/74 (24%), Positives = 20/74 (27%), Gaps = 22/74 (29%)
Query: 221 RPPPSP----SPAIRNNLPPPPML----PPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGM 272
R P +P P LPPPP L P P + P P P P P
Sbjct: 693 RAPQAPRPGGPPGGGGGLPPPPDLPAAAGPAPCGSSLIASPTAP------PEPEPP---- 742
Query: 273 APTLAMPPPPPPPN 286
N
Sbjct: 743 ----GAEQADGAEN 752
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1. Members
of this family are necessary for accurate chromosome
transmission during cell division.
Length = 804
Score = 44.0 bits (104), Expect = 5e-05
Identities = 16/72 (22%), Positives = 16/72 (22%), Gaps = 3/72 (4%)
Query: 218 PSFRPPPSPS-PAIRNNLPPPPMLPPPPPPQMMGPPPPPP--GLFGNMPPPPPHMGGMAP 274
P P PP PP PP P P P P
Sbjct: 172 LPQPPQQVLPQGMPPRQAAFPQQGPPEQPPGYPQPPQGHPEQVQPQQFLPAPSQAPAQPP 231
Query: 275 TLAMPPPPPPPN 286
P PPP
Sbjct: 232 LPPQLPQQPPPL 243
Score = 42.1 bits (99), Expect = 3e-04
Identities = 26/91 (28%), Positives = 28/91 (30%), Gaps = 8/91 (8%)
Query: 204 KQFFLQFSFRNESKPSFRPPPSPSPAIRNNLPPPP--------MLPPPPPPQMMGPPPPP 255
+ QF P+ P P P L P PPP PPQ PP P
Sbjct: 213 QVQPQQFLPAPSQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQPPQQQQQPPQP 272
Query: 256 PGLFGNMPPPPPHMGGMAPTLAMPPPPPPPN 286
P PH G A PPP P
Sbjct: 273 QAQPPPQNQPTPHPGLPQGQNAPLPPPQQPQ 303
Score = 41.7 bits (98), Expect = 3e-04
Identities = 22/82 (26%), Positives = 26/82 (31%), Gaps = 8/82 (9%)
Query: 208 LQFSFRNESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPP 267
Q +F + P P P P P P PP PP P PP
Sbjct: 187 RQAAFPQQGPPEQPPGYPQPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQL-----PQQPP 241
Query: 268 HMGG---MAPTLAMPPPPPPPN 286
+ + MPPPPP P
Sbjct: 242 PLQQPQFPGLSQQMPPPPPQPP 263
Score = 39.8 bits (93), Expect = 0.001
Identities = 22/77 (28%), Positives = 25/77 (32%)
Query: 209 QFSFRNESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPH 268
+ + P P PA PP+ P P P PGL MPPPPP
Sbjct: 202 GYPQPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQ 261
Query: 269 MGGMAPTLAMPPPPPPP 285
P PPP
Sbjct: 262 PPQQQQQPPQPQAQPPP 278
Score = 34.4 bits (79), Expect = 0.061
Identities = 20/64 (31%), Positives = 21/64 (32%), Gaps = 3/64 (4%)
Query: 222 PPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPP 281
PPP P P + PP P PPP P P P G P PP L P
Sbjct: 256 PPPPPQPPQQQQQPPQPQAQPPP---QNQPTPHPGLPQGQNAPLPPPQQPQLLPLVQQPQ 312
Query: 282 PPPP 285
Sbjct: 313 GQQR 316
Score = 32.8 bits (75), Expect = 0.19
Identities = 19/66 (28%), Positives = 20/66 (30%), Gaps = 14/66 (21%)
Query: 235 PPPPMLPPPPPPQMMGPPPP------PPGLFGNMPPPPPHMGGM--------APTLAMPP 280
P P P PQ M P PP P PP AP+ A
Sbjct: 170 PQLPQPPQQVLPQGMPPRQAAFPQQGPPEQPPGYPQPPQGHPEQVQPQQFLPAPSQAPAQ 229
Query: 281 PPPPPN 286
PP PP
Sbjct: 230 PPLPPQ 235
Score = 29.4 bits (66), Expect = 2.9
Identities = 15/59 (25%), Positives = 16/59 (27%), Gaps = 5/59 (8%)
Query: 222 PPPSPSPAIRNNLPPPPMLPPPPPP-----QMMGPPPPPPGLFGNMPPPPPHMGGMAPT 275
P P PPP P P P PPP P L + P G
Sbjct: 263 PQQQQQPPQPQAQPPPQNQPTPHPGLPQGQNAPLPPPQQPQLLPLVQQPQGQQRGPQFR 321
Score = 28.2 bits (63), Expect = 6.8
Identities = 12/40 (30%), Positives = 14/40 (35%)
Query: 218 PSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPG 257
P +P P P N P PP P P + P G
Sbjct: 278 PQNQPTPHPGLPQGQNAPLPPPQQPQLLPLVQQPQGQQRG 317
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional.
Length = 3151
Score = 44.2 bits (104), Expect = 6e-05
Identities = 23/65 (35%), Positives = 24/65 (36%), Gaps = 7/65 (10%)
Query: 221 RPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPP 280
RP S S + PP P PP P PPP PPPPP P P
Sbjct: 2888 RPAVSRST---ESFALPPDQPERPPQ----PQAPPPPQPQPQPPPPPQPQPPPPPPPRPQ 2940
Query: 281 PPPPP 285
PP P
Sbjct: 2941 PPLAP 2945
Score = 40.3 bits (94), Expect = 0.001
Identities = 19/67 (28%), Positives = 21/67 (31%)
Query: 215 ESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAP 274
+ P +P P PPPP P PPPP P PP P P
Sbjct: 2903 DQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQP 2962
Query: 275 TLAMPPP 281
L P
Sbjct: 2963 WLGALVP 2969
Score = 37.6 bits (87), Expect = 0.007
Identities = 20/71 (28%), Positives = 22/71 (30%), Gaps = 3/71 (4%)
Query: 218 PSFRPPPSP--SPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPP-PHMGGMAP 274
PS P P P + + P P PPPP P P
Sbjct: 2867 PSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPP 2926
Query: 275 TLAMPPPPPPP 285
PPPPPPP
Sbjct: 2927 PQPQPPPPPPP 2937
Score = 36.5 bits (84), Expect = 0.015
Identities = 21/74 (28%), Positives = 27/74 (36%), Gaps = 7/74 (9%)
Query: 215 ESKPSFRPPPS--PSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGM 272
+P P + +P P P P P PP P PPPP P P +
Sbjct: 2586 ARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPS-----PSPAANEPDP 2640
Query: 273 APTLAMPPPPPPPN 286
P +PPP P +
Sbjct: 2641 HPPPTVPPPERPRD 2654
Score = 36.1 bits (83), Expect = 0.023
Identities = 17/68 (25%), Positives = 18/68 (26%), Gaps = 3/68 (4%)
Query: 221 RPPPSPSPAIRNNLPPPP---MLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLA 277
RPP A PP + P PP P P P
Sbjct: 2865 RPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPP 2924
Query: 278 MPPPPPPP 285
PP P PP
Sbjct: 2925 PPPQPQPP 2932
Score = 35.7 bits (82), Expect = 0.026
Identities = 22/66 (33%), Positives = 27/66 (40%), Gaps = 6/66 (9%)
Query: 222 PPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAP--TLAMP 279
+P+ A+ P LPPP Q PPPPP PP P G +AP +
Sbjct: 2810 AVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPP----PPSLPLGGSVAPGGDVRRR 2865
Query: 280 PPPPPP 285
PP P
Sbjct: 2866 PPSRSP 2871
Score = 35.3 bits (81), Expect = 0.036
Identities = 20/76 (26%), Positives = 23/76 (30%), Gaps = 14/76 (18%)
Query: 221 RPPPSPSPAIRNNLPPPPMLP-----------PPPPPQMMGPPPPPPGLFGNMPPPPPHM 269
R + SP R P PPPPP P P +PP P
Sbjct: 2672 RAAQASSPPQR---PRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAA 2728
Query: 270 GGMAPTLAMPPPPPPP 285
+P L P PP
Sbjct: 2729 RQASPALPAAPAPPAV 2744
Score = 34.1 bits (78), Expect = 0.099
Identities = 20/80 (25%), Positives = 27/80 (33%), Gaps = 7/80 (8%)
Query: 207 FLQFSFRNESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPP 266
F + ++ P P+ P P P +P PP P P + P PP
Sbjct: 395 FARGPGGDDQTRPAAPVPASVPT-----PAPTPVPASAPPPPATPLPSAEPGSDDGPAPP 449
Query: 267 PHMGGMAPTLAMPPPPPPPN 286
P P A P P P+
Sbjct: 450 PE--RQPPAPATEPAPDDPD 467
Score = 33.4 bits (76), Expect = 0.16
Identities = 20/73 (27%), Positives = 20/73 (27%), Gaps = 8/73 (10%)
Query: 221 RPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPP--------PHMGGM 272
PPP P P PP P P P P P
Sbjct: 2700 DPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPAR 2759
Query: 273 APTLAMPPPPPPP 285
PT A PP P PP
Sbjct: 2760 PPTTAGPPAPAPP 2772
Score = 33.4 bits (76), Expect = 0.16
Identities = 20/65 (30%), Positives = 24/65 (36%), Gaps = 4/65 (6%)
Query: 221 RPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPP 280
RP + R +LP P PP + PP P PPP + PP
Sbjct: 2785 RPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPP----TSAQPTAPP 2840
Query: 281 PPPPP 285
PPP P
Sbjct: 2841 PPPGP 2845
Score = 33.4 bits (76), Expect = 0.17
Identities = 23/75 (30%), Positives = 23/75 (30%), Gaps = 8/75 (10%)
Query: 216 SKPSFRPPPSPSPAIRNNLPPPPMLP----PPPPPQMMGPPPPPPGLFGNMPPPPPHMGG 271
S SF PP P P P PPPP PPPPPP PP P
Sbjct: 2894 STESFALPPDQPERPPQ--PQAPPPPQPQPQPPPPPQPQPPPPPPPR--PQPPLAPTTDP 2949
Query: 272 MAPTLAMPPPPPPPN 286
P P
Sbjct: 2950 AGAGEPSGAVPQPWL 2964
Score = 32.6 bits (74), Expect = 0.25
Identities = 23/77 (29%), Positives = 26/77 (33%), Gaps = 13/77 (16%)
Query: 222 PPPSPSPAIRNNLPPPPMLP--------PPPPPQMMGPPPPP-----PGLFGNMPPPPPH 268
PPP+P PA + P+ P P P PP P PG PP
Sbjct: 2704 PPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTT 2763
Query: 269 MGGMAPTLAMPPPPPPP 285
G AP P PP
Sbjct: 2764 AGPPAPAPPAAPAAGPP 2780
Score = 32.6 bits (74), Expect = 0.30
Identities = 17/56 (30%), Positives = 17/56 (30%), Gaps = 6/56 (10%)
Query: 219 SFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAP 274
R P PSP PP P PPP P P PPP P
Sbjct: 2607 DPRGPAPPSP------LPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDP 2656
Score = 32.6 bits (74), Expect = 0.30
Identities = 27/86 (31%), Positives = 31/86 (36%), Gaps = 18/86 (20%)
Query: 216 SKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPP-------PPPH 268
P+ PP+ SPA LPPP P PP GPPPP L G++ P PP
Sbjct: 2812 LAPAAALPPAASPA--GPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSR 2869
Query: 269 MGGMAPT---------LAMPPPPPPP 285
P LA P
Sbjct: 2870 SPAAKPAAPARPPVRRLARPAVSRST 2895
Score = 32.6 bits (74), Expect = 0.32
Identities = 20/75 (26%), Positives = 26/75 (34%), Gaps = 2/75 (2%)
Query: 213 RNESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGM 272
R P+ PP+P+P PP L P + P + PP +
Sbjct: 2756 RPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPA 2815
Query: 273 A--PTLAMPPPPPPP 285
A P A P P PP
Sbjct: 2816 AALPPAASPAGPLPP 2830
Score = 32.2 bits (73), Expect = 0.36
Identities = 19/71 (26%), Positives = 20/71 (28%), Gaps = 7/71 (9%)
Query: 222 PPPSPSPAIRNNLPPPPMLPPPPP-------PQMMGPPPPPPGLFGNMPPPPPHMGGMAP 274
P P A R P P P PP P P PP G P PP P
Sbjct: 2720 PLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGP 2779
Query: 275 TLAMPPPPPPP 285
+ P
Sbjct: 2780 PRRLTRPAVAS 2790
Score = 31.8 bits (72), Expect = 0.46
Identities = 20/84 (23%), Positives = 24/84 (28%), Gaps = 18/84 (21%)
Query: 221 RPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMP---PPPPHM-------- 269
RP + P P P PP P P P + + P P P M
Sbjct: 2482 RPAEARFPFAAGAAPDPGGGGPPDPDAPPAPSRLAPAILPDEPVGEPVHPRMLTWIRGLE 2541
Query: 270 -------GGMAPTLAMPPPPPPPN 286
G P L PP P+
Sbjct: 2542 ELASDDAGDPPPPLPPAAPPAAPD 2565
Score = 31.8 bits (72), Expect = 0.46
Identities = 20/81 (24%), Positives = 26/81 (32%), Gaps = 11/81 (13%)
Query: 217 KPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPG-----------LFGNMPPP 265
P +P P P P + PPPP PP P P + G + P
Sbjct: 2916 PPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVP 2975
Query: 266 PPHMGGMAPTLAMPPPPPPPN 286
+ AP+ P PP
Sbjct: 2976 RFRVPQPAPSREAPASSTPPL 2996
Score = 31.1 bits (70), Expect = 0.75
Identities = 23/83 (27%), Positives = 26/83 (31%), Gaps = 19/83 (22%)
Query: 222 PPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPP-------------------GLFGNM 262
PP PSP+ N P P P PPP+ P P
Sbjct: 2625 DPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPR 2684
Query: 263 PPPPPHMGGMAPTLAMPPPPPPP 285
G +LA PPPPPP
Sbjct: 2685 RRAARPTVGSLTSLADPPPPPPT 2707
Score = 31.1 bits (70), Expect = 0.83
Identities = 19/63 (30%), Positives = 20/63 (31%), Gaps = 6/63 (9%)
Query: 218 PSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLA 277
P PPSP P P PPPP P P +PPP AP
Sbjct: 2608 PRGPAPPSPLP------PDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRV 2661
Query: 278 MPP 280
P
Sbjct: 2662 SRP 2664
Score = 30.7 bits (69), Expect = 1.2
Identities = 20/69 (28%), Positives = 22/69 (31%), Gaps = 10/69 (14%)
Query: 222 PPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMA-----PTL 276
P P P + P PP PPP PP + G A L
Sbjct: 255 PAPPPVVGEGADRAPETARGATGPP-----PPPEAAAPNGAAAPPDGVWGAALAGAPLAL 309
Query: 277 AMPPPPPPP 285
PP PPPP
Sbjct: 310 PAPPDPPPP 318
Score = 29.9 bits (67), Expect = 1.9
Identities = 25/83 (30%), Positives = 28/83 (33%), Gaps = 20/83 (24%)
Query: 222 PPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPP-------------------PGLFGNM 262
PPPSPSPA N P P PPP + P P P
Sbjct: 2627 PPPSPSPA-ANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRR 2685
Query: 263 PPPPPHMGGMAPTLAMPPPPPPP 285
P +G + PPPPP P
Sbjct: 2686 RAARPTVGSLTSLADPPPPPPTP 2708
Score = 29.9 bits (67), Expect = 2.2
Identities = 24/83 (28%), Positives = 27/83 (32%), Gaps = 24/83 (28%)
Query: 218 PSFRPPPSPSPAIRNNLPPPPMLPPPP-------------PPQMMGPPPP--PPGLFGNM 262
P PP +P ++ PPP P P PPQ P P G
Sbjct: 2556 PPAAPPAAPDRSV----PPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGP 2611
Query: 263 PPPPPHMGGMAPTLAMPPPPPPP 285
PP P P P PPPP
Sbjct: 2612 APPSP-----LPPDTHAPDPPPP 2629
Score = 29.1 bits (65), Expect = 3.1
Identities = 25/78 (32%), Positives = 27/78 (34%), Gaps = 13/78 (16%)
Query: 216 SKPSFRPPPSPSPAIRNNLPPPPMLPPPP--PPQMMGPPPPPPGLFGNMPPPPPHMGGMA 273
S P+ P P P+ A PPPP P P P GP PPP P
Sbjct: 414 SVPTPAPTPVPASA-----PPPPATPLPSAEPGSDDGPAPPPERQPPAPATEPAPDDPDD 468
Query: 274 PT------LAMPPPPPPP 285
T L PP PP
Sbjct: 469 ATRKALDALRERRPPEPP 486
Score = 29.1 bits (65), Expect = 3.6
Identities = 19/81 (23%), Positives = 23/81 (28%), Gaps = 8/81 (9%)
Query: 213 RNESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPP-PPPHMGG 271
R + PP P PP PPP P + P P G P P +G
Sbjct: 2907 RPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGA 2966
Query: 272 MAP-------TLAMPPPPPPP 285
+ P P P
Sbjct: 2967 LVPGRVAVPRFRVPQPAPSRE 2987
Score = 29.1 bits (65), Expect = 3.9
Identities = 18/74 (24%), Positives = 25/74 (33%), Gaps = 4/74 (5%)
Query: 216 SKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPP----PHMGG 271
+ P+ P+P P P PP GPP P P PP P +
Sbjct: 2731 ASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVAS 2790
Query: 272 MAPTLAMPPPPPPP 285
++ + P P P
Sbjct: 2791 LSESRESLPSPWDP 2804
>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP). This family
contains bacterial fibronectin-attachment proteins
(FAP). Family members are rich in alanine and proline,
are approximately 300 long, and seem to be restricted to
mycobacteria. These proteins contain a
fibronectin-binding motif that allows mycobacteria to
bind to fibronectin in the extracellular matrix.
Length = 297
Score = 43.0 bits (101), Expect = 8e-05
Identities = 24/64 (37%), Positives = 25/64 (39%), Gaps = 5/64 (7%)
Query: 222 PPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPP 281
+ PPPP PP P P PPPP N PPPPP A PPP
Sbjct: 50 TAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPPPADPNAPPPPP-----VDPNAPPPP 104
Query: 282 PPPP 285
P P
Sbjct: 105 APEP 108
Score = 41.0 bits (96), Expect = 4e-04
Identities = 25/64 (39%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Query: 222 PPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPP 281
P P P P P P PPPPP PP P P PPPPP P + P
Sbjct: 41 PAPPPPPPSTAAAAPAPA-APPPPPPPAAPPAPQPDDPNAAPPPPPADPNAPPPPPVDPN 99
Query: 282 PPPP 285
PPP
Sbjct: 100 APPP 103
Score = 36.8 bits (85), Expect = 0.007
Identities = 21/60 (35%), Positives = 21/60 (35%), Gaps = 6/60 (10%)
Query: 226 PSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPPPPPP 285
PA N P PP PP P PPP PP P P PPPPP
Sbjct: 32 ALPATANADPAPPPPPPSTAAAAPAPAAPPPPPPPAAPPAPQ------PDDPNAAPPPPP 85
Score = 32.9 bits (75), Expect = 0.15
Identities = 21/50 (42%), Positives = 22/50 (44%)
Query: 222 PPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGG 271
PPP P PA P PPPP PPPP + N PPPP G
Sbjct: 60 PPPPPPPAAPPAPQPDDPNAAPPPPPADPNAPPPPPVDPNAPPPPAPEPG 109
Score = 28.7 bits (64), Expect = 3.0
Identities = 19/46 (41%), Positives = 20/46 (43%), Gaps = 6/46 (13%)
Query: 222 PPPSPSPAIRNNLPPPPML------PPPPPPQMMGPPPPPPGLFGN 261
PP+P P N PPPP PPP P PP P PG N
Sbjct: 68 APPAPQPDDPNAAPPPPPADPNAPPPPPVDPNAPPPPAPEPGRIDN 113
>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 620
Score = 40.7 bits (96), Expect = 6e-04
Identities = 20/70 (28%), Positives = 24/70 (34%)
Query: 216 SKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPT 275
S P + + PPP PP P P PPP PP + P
Sbjct: 513 QSGSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPA 572
Query: 276 LAMPPPPPPP 285
+ PPPP P
Sbjct: 573 DSSPPPPIPE 582
Score = 38.8 bits (91), Expect = 0.002
Identities = 20/75 (26%), Positives = 23/75 (30%), Gaps = 2/75 (2%)
Query: 214 NESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPP--GLFGNMPPPPPHMGG 271
+ S + PPP PP P P PPPPP N P P
Sbjct: 516 SASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSS 575
Query: 272 MAPTLAMPPPPPPPN 286
P + P P P
Sbjct: 576 PPPPIPEEPTPSPTK 590
Score = 36.5 bits (85), Expect = 0.014
Identities = 21/72 (29%), Positives = 25/72 (34%), Gaps = 5/72 (6%)
Query: 215 ESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAP 274
ES+ + +P PPPP PP P PPP P PPPP +
Sbjct: 511 ESQSGSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTP-----PPPPPTATQASSN 565
Query: 275 TLAMPPPPPPPN 286
A P P
Sbjct: 566 APAQIPADSSPP 577
Score = 30.7 bits (70), Expect = 0.96
Identities = 12/72 (16%), Positives = 13/72 (18%), Gaps = 6/72 (8%)
Query: 215 ESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAP 274
P P P P PP P P P
Sbjct: 373 APANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEPTEPS------P 426
Query: 275 TLAMPPPPPPPN 286
T PP+
Sbjct: 427 TPPANAANAPPS 438
Score = 28.8 bits (65), Expect = 3.9
Identities = 16/77 (20%), Positives = 16/77 (20%), Gaps = 14/77 (18%)
Query: 214 NESKPSFRPPPSPSPAIRNNLP----PPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHM 269
P PP P P P PPP P PPP P
Sbjct: 529 KSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSP-----PPPIP-- 581
Query: 270 GGMAPTLAMPPPPPPPN 286
P P
Sbjct: 582 ---EEPTPSPTKDSSPE 595
>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 618
Score = 40.9 bits (96), Expect = 6e-04
Identities = 15/71 (21%), Positives = 17/71 (23%), Gaps = 5/71 (7%)
Query: 215 ESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAP 274
E K RP + A P P P PP PP + A
Sbjct: 377 EKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPP-----AAAPPAPVAAPAA 431
Query: 275 TLAMPPPPPPP 285
P P
Sbjct: 432 AAPAAAPAAAP 442
Score = 38.2 bits (89), Expect = 0.004
Identities = 16/69 (23%), Positives = 20/69 (28%), Gaps = 2/69 (2%)
Query: 218 PSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLA 277
P+ P + A P P P PP P P P A +A
Sbjct: 389 PAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAA--VA 446
Query: 278 MPPPPPPPN 286
+ P PP
Sbjct: 447 LAPAPPAQA 455
Score = 37.4 bits (87), Expect = 0.007
Identities = 13/75 (17%), Positives = 15/75 (20%), Gaps = 8/75 (10%)
Query: 212 FRNESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGG 271
F+ + P R P P P P P
Sbjct: 364 FKPAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAA---ASAPAA---- 416
Query: 272 MAPTLAMPPPPPPPN 286
P A P P P
Sbjct: 417 -PPAAAPPAPVAAPA 430
Score = 32.0 bits (73), Expect = 0.37
Identities = 15/70 (21%), Positives = 20/70 (28%)
Query: 216 SKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPT 275
S P+ P +P + P P P + P PP P P
Sbjct: 412 SAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPA 471
Query: 276 LAMPPPPPPP 285
+A P P
Sbjct: 472 VASAAPAPAA 481
Score = 31.2 bits (71), Expect = 0.68
Identities = 10/67 (14%), Positives = 16/67 (23%)
Query: 216 SKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPT 275
+ P+ P + A + P P P+ + P P A
Sbjct: 427 AAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAA 486
Query: 276 LAMPPPP 282
P
Sbjct: 487 RLTPTEE 493
Score = 30.8 bits (70), Expect = 0.85
Identities = 15/67 (22%), Positives = 18/67 (26%), Gaps = 4/67 (5%)
Query: 222 PPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPP---PPPHMGGMAPTLAM 278
P P +PA P P PP +P P P + AP A
Sbjct: 423 PAPVAAPAAAAP-AAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAA 481
Query: 279 PPPPPPP 285
P
Sbjct: 482 APAAARL 488
Score = 30.1 bits (68), Expect = 1.4
Identities = 14/65 (21%), Positives = 17/65 (26%), Gaps = 1/65 (1%)
Query: 222 PPPSPSPAIRNNLPPPPMLPPPPP-PQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPP 280
P+P P P P + P PP + P A A P
Sbjct: 419 AAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPA 478
Query: 281 PPPPP 285
P P
Sbjct: 479 PAAAP 483
Score = 30.1 bits (68), Expect = 1.6
Identities = 17/71 (23%), Positives = 21/71 (29%), Gaps = 7/71 (9%)
Query: 222 PPPSPSPAIRNNLPPPPMLPPPP---PPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAM 278
P +P+ A PP PP P P P P P T+A+
Sbjct: 403 PAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAI 462
Query: 279 P----PPPPPP 285
P P P
Sbjct: 463 PVRVAPEPAVA 473
Score = 29.7 bits (67), Expect = 2.3
Identities = 13/77 (16%), Positives = 17/77 (22%), Gaps = 9/77 (11%)
Query: 218 PSFRPPPSPSPAIRNNLP--PPPMLPPPPPP-------QMMGPPPPPPGLFGNMPPPPPH 268
+ P+ PA P P P P + PP P
Sbjct: 408 AAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVA 467
Query: 269 MGGMAPTLAMPPPPPPP 285
+ A P P
Sbjct: 468 PEPAVASAAPAPAAAPA 484
>gnl|CDD|218191 pfam04652, DUF605, Vta1 like. Vta1 (VPS20-associated protein 1) is
a positive regulator of Vps4. Vps4 is an ATPase that is
required in the multivesicular body (MVB) sorting
pathway to dissociate the endosomal sorting complex
required for transport (ESCRT). Vta1 promotes correct
assembly of Vps4 and stimulates its ATPase activity
through its conserved Vta1/SBP1/LIP5 region.
Length = 315
Score = 40.1 bits (94), Expect = 8e-04
Identities = 23/71 (32%), Positives = 25/71 (35%), Gaps = 6/71 (8%)
Query: 222 PPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPP------PHMGGMAPT 275
P PSP + P LPP P PPP P N PPP P P
Sbjct: 194 VPSFPSPPEDPSSPSDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPP 253
Query: 276 LAMPPPPPPPN 286
L+ P PP
Sbjct: 254 LSTAKPTPPSA 264
Score = 37.4 bits (87), Expect = 0.006
Identities = 14/65 (21%), Positives = 15/65 (23%)
Query: 222 PPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPP 281
P + P PP P PP PPP P P
Sbjct: 181 SASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGP 240
Query: 282 PPPPN 286
PP
Sbjct: 241 AAPPP 245
Score = 36.2 bits (84), Expect = 0.012
Identities = 18/71 (25%), Positives = 24/71 (33%), Gaps = 6/71 (8%)
Query: 215 ESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAP 274
++ P+ P P + P P P PP P + PPP P
Sbjct: 176 DADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPAPSSFQSDTPPPSP------E 229
Query: 275 TLAMPPPPPPP 285
+ P PPP P
Sbjct: 230 SPTNPSPPPGP 240
Score = 36.2 bits (84), Expect = 0.015
Identities = 22/69 (31%), Positives = 27/69 (39%), Gaps = 2/69 (2%)
Query: 218 PSFRPPPSPSPAIRN-NLPPPPM-LPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPT 275
PSF PP + + +LPP P PP P P G PPPP + + P
Sbjct: 195 PSFPSPPEDPSSPSDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPL 254
Query: 276 LAMPPPPPP 284
P PP
Sbjct: 255 STAKPTPPS 263
Score = 31.2 bits (71), Expect = 0.55
Identities = 18/73 (24%), Positives = 22/73 (30%), Gaps = 7/73 (9%)
Query: 214 NESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMA 273
++S P S + P PPP P PPPPP + P
Sbjct: 208 SDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPA--APPPPPVQQVPPLSTAKP-----T 260
Query: 274 PTLAMPPPPPPPN 286
P A P P
Sbjct: 261 PPSASATPAPIGG 273
Score = 30.4 bits (69), Expect = 1.0
Identities = 12/73 (16%), Positives = 15/73 (20%), Gaps = 7/73 (9%)
Query: 221 RPPPSPSP-------AIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMA 273
P P A P P PP +P P +
Sbjct: 146 EDPNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPS 205
Query: 274 PTLAMPPPPPPPN 286
PP P +
Sbjct: 206 SPSDSSLPPAPSS 218
Score = 29.3 bits (66), Expect = 2.6
Identities = 14/73 (19%), Positives = 18/73 (24%), Gaps = 1/73 (1%)
Query: 214 NESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMA 273
N P A N+ P P PP + P PP
Sbjct: 149 NPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSP- 207
Query: 274 PTLAMPPPPPPPN 286
++PP P
Sbjct: 208 SDSSLPPAPSSFQ 220
Score = 28.9 bits (65), Expect = 3.3
Identities = 19/65 (29%), Positives = 21/65 (32%), Gaps = 5/65 (7%)
Query: 216 SKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPT 275
S PP + N PPP PPPPP PP P PP AP
Sbjct: 217 SSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTA-----KPTPPSASATPAPI 271
Query: 276 LAMPP 280
+
Sbjct: 272 GGITL 276
Score = 28.5 bits (64), Expect = 3.9
Identities = 13/69 (18%), Positives = 19/69 (27%), Gaps = 14/69 (20%)
Query: 218 PSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLA 277
P P+ + P + P PP+ P PP P +
Sbjct: 173 PGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDS------SLPPAPS--------S 218
Query: 278 MPPPPPPPN 286
PPP+
Sbjct: 219 FQSDTPPPS 227
Score = 28.5 bits (64), Expect = 4.4
Identities = 15/68 (22%), Positives = 18/68 (26%), Gaps = 3/68 (4%)
Query: 222 PPPSPSPAIRNNLPPPPMLPP---PPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAM 278
S + P PP P P PP P + PP P
Sbjct: 168 SDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPAPSSFQSDTPPPS 227
Query: 279 PPPPPPPN 286
P P P+
Sbjct: 228 PESPTNPS 235
>gnl|CDD|220603 pfam10152, DUF2360, Predicted coiled-coil domain-containing protein
(DUF2360). This is the conserved 140 amino acid region
of a family of proteins conserved from nematodes to
humans. One C. elegans member is annotated as a
Daf-16-dependent longevity protein 1 but this could not
be confirmed. The function is unknown.
Length = 147
Score = 38.5 bits (90), Expect = 8e-04
Identities = 18/63 (28%), Positives = 20/63 (31%), Gaps = 9/63 (14%)
Query: 215 ESKPSFRPPPSPSPAIRNNLPPPP----MLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMG 270
E PP P+ AI N PPPP PPP PP P P
Sbjct: 51 EDVTVQTTPPPPASAITNGGPPPPPPARAEAASPPPPEAPAEPPAEP-----EPEAPAEN 105
Query: 271 GMA 273
+
Sbjct: 106 TVT 108
Score = 35.1 bits (81), Expect = 0.015
Identities = 17/53 (32%), Positives = 18/53 (33%), Gaps = 2/53 (3%)
Query: 236 PPPMLPPPPPPQMM--GPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPPPPPPN 286
PPPP + G PPPPP PPP P P P N
Sbjct: 53 VTVQTTPPPPASAITNGGPPPPPPARAEAASPPPPEAPAEPPAEPEPEAPAEN 105
>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 585
Score = 40.2 bits (94), Expect = 9e-04
Identities = 22/81 (27%), Positives = 29/81 (35%), Gaps = 13/81 (16%)
Query: 213 RNESKPSFRPPPSPSPAIRNNLPPPPML-----PPPPPPQMMGPPPPPPGLFGNMPPPPP 267
+ +P+ P P A N+PP + PPP PP+ + PP P P
Sbjct: 376 PSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHTP-----ESAPK 430
Query: 268 HMGGMAPTLAMP---PPPPPP 285
P P PP PP
Sbjct: 431 LTRAAIPVDEKPKYTPPAPPK 451
Score = 39.0 bits (91), Expect = 0.002
Identities = 16/72 (22%), Positives = 22/72 (30%), Gaps = 10/72 (13%)
Query: 214 NESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMA 273
+ + P P+PA PP + PPP PP P +A
Sbjct: 369 AKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPP------VPPRP----VA 418
Query: 274 PTLAMPPPPPPP 285
P + P P
Sbjct: 419 PPVPHTPESAPK 430
Score = 37.1 bits (86), Expect = 0.010
Identities = 15/68 (22%), Positives = 20/68 (29%), Gaps = 8/68 (11%)
Query: 218 PSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLA 277
P P + +P+ P P P + P P PP + P
Sbjct: 366 PQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRE-----TATPP---PVPPRPV 417
Query: 278 MPPPPPPP 285
PP P P
Sbjct: 418 APPVPHTP 425
>gnl|CDD|220708 pfam10349, WWbp, WW-domain ligand protein. The WWbp domain is
characterized by several short PY and PT-like motifs of
the PPPPY form. These appear to bind directly to the WW
domains of WWP1 and WWP2 and other such diverse proteins
as dystrophin and YAP (Yes-associated protein). This is
the WW-domain binding protein WWbp via PY and PY_like
motifs. The presence of a phosphotyrosine residue in the
pWBP-1 peptide abolishes WW domain binding which
suggests a potential regulatory role for tyrosine
phosphorylation in modulating WW domain-ligand
interactions. Given the likelihood that WWP1 and WWP2
function as E3 ubiquitin-protein ligases, it is possible
that initial substrate-specific recognition occurs via
WW domain-substrate protein interaction followed by
ubiquitin transfer and subsequent proteolysis. This
domain lies just downstream of the GRAM (pfam02893) in
many members.
Length = 111
Score = 36.6 bits (85), Expect = 0.002
Identities = 19/62 (30%), Positives = 21/62 (33%)
Query: 224 PSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPPPP 283
P P +L P P P GPPPP + P PP PPPP
Sbjct: 46 YYPPPGAYVHLEPLPAYGQYAAPPPYGPPPPYYPAPPGVYPTPPPPNSGYMADPQEPPPP 105
Query: 284 PP 285
P
Sbjct: 106 YP 107
Score = 27.8 bits (62), Expect = 2.8
Identities = 17/53 (32%), Positives = 18/53 (33%)
Query: 222 PPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAP 274
P A PPP P PP PPPP G + PPP G
Sbjct: 59 LPAYGQYAAPPPYGPPPPYYPAPPGVYPTPPPPNSGYMADPQEPPPPYPGPPQ 111
Score = 26.6 bits (59), Expect = 8.2
Identities = 15/40 (37%), Positives = 16/40 (40%)
Query: 218 PSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPG 257
P + PPP PA P PP PPPP PG
Sbjct: 69 PPYGPPPPYYPAPPGVYPTPPPPNSGYMADPQEPPPPYPG 108
>gnl|CDD|227505 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA processing and
modification].
Length = 2365
Score = 38.8 bits (90), Expect = 0.003
Identities = 17/32 (53%), Positives = 17/32 (53%), Gaps = 6/32 (18%)
Query: 236 PPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPP 267
PP PPPPPP PP PP PPPPP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPP------PPPPP 30
Score = 38.8 bits (90), Expect = 0.003
Identities = 21/46 (45%), Positives = 22/46 (47%), Gaps = 19/46 (41%)
Query: 240 LPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPPPPPP 285
LPP PP PPPPPPG PP + PPPPPPP
Sbjct: 4 LPPGNPP----PPPPPPGF------EPP---------SQPPPPPPP 30
Score = 38.4 bits (89), Expect = 0.004
Identities = 18/41 (43%), Positives = 19/41 (46%), Gaps = 14/41 (34%)
Query: 218 PSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGL 258
P PPP PPPP PP P PPPPPPG+
Sbjct: 6 PGNPPPP----------PPPPGFEPPSQP----PPPPPPGV 32
Score = 37.7 bits (87), Expect = 0.006
Identities = 17/36 (47%), Positives = 18/36 (50%), Gaps = 6/36 (16%)
Query: 248 MMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPPPP 283
M PP GN PPPPP G P+ PPPPP
Sbjct: 1 MASLPP------GNPPPPPPPPGFEPPSQPPPPPPP 30
Score = 36.1 bits (83), Expect = 0.022
Identities = 19/35 (54%), Positives = 19/35 (54%), Gaps = 10/35 (28%)
Query: 234 LPP--PPMLPPPPPPQMMGPPPPPPGLFGNMPPPP 266
LPP PP PPPPPP P PPP PPPP
Sbjct: 4 LPPGNPP--PPPPPPGFEPPSQPPP------PPPP 30
>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau;
Validated.
Length = 598
Score = 38.0 bits (89), Expect = 0.005
Identities = 10/68 (14%), Positives = 11/68 (16%), Gaps = 3/68 (4%)
Query: 222 PPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPG---LFGNMPPPPPHMGGMAPTLAM 278
P P P P G +P A
Sbjct: 393 SPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAAPPAPAAA 452
Query: 279 PPPPPPPN 286
P P N
Sbjct: 453 PQPAVRLN 460
Score = 36.4 bits (85), Expect = 0.013
Identities = 17/65 (26%), Positives = 19/65 (29%), Gaps = 3/65 (4%)
Query: 224 PSPSPAIR---NNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPP 280
P+P A+R P P PP P P P GG A LA P
Sbjct: 378 PTPDEALRRLQEGPPSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVP 437
Query: 281 PPPPP 285
Sbjct: 438 DAAAA 442
Score = 30.6 bits (70), Expect = 0.95
Identities = 7/47 (14%), Positives = 13/47 (27%)
Query: 216 SKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNM 262
+ + P+ A+ PP P P F ++
Sbjct: 419 AAAAAPAAGGPAAALAAVPDAAAAAAAPPAPAAAPQPAVRLNSFEDI 465
>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 700
Score = 37.9 bits (88), Expect = 0.006
Identities = 16/73 (21%), Positives = 20/73 (27%), Gaps = 8/73 (10%)
Query: 215 ESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPP---PPGLFGNMPPPPPHMGG 271
P+ P +P+ A P P P P P PP
Sbjct: 447 APAPAPAPAAAPAAA-----ARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEE 501
Query: 272 MAPTLAMPPPPPP 284
+ P A P P P
Sbjct: 502 LPPEFASPAPAQP 514
Score = 31.8 bits (72), Expect = 0.42
Identities = 14/76 (18%), Positives = 17/76 (22%), Gaps = 12/76 (15%)
Query: 221 RPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHM----------- 269
P + +PA P P P P P P +
Sbjct: 385 PAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGP 444
Query: 270 -GGMAPTLAMPPPPPP 284
G AP A P
Sbjct: 445 GGAPAPAPAPAAAPAA 460
Score = 29.8 bits (67), Expect = 1.7
Identities = 16/77 (20%), Positives = 17/77 (22%), Gaps = 17/77 (22%)
Query: 222 PPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLF-------------GNMPPPPPH 268
P P+ PA P P P G P P P
Sbjct: 397 PAPAAPPA---APAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPA 453
Query: 269 MGGMAPTLAMPPPPPPP 285
AP A P P
Sbjct: 454 PAA-APAAAARPAAAGP 469
Score = 29.8 bits (67), Expect = 1.7
Identities = 16/71 (22%), Positives = 16/71 (22%), Gaps = 7/71 (9%)
Query: 222 PPPSPSPAIRNNL-------PPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAP 274
P P A R P P P P P P P A
Sbjct: 428 PAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAA 487
Query: 275 TLAMPPPPPPP 285
A PPP
Sbjct: 488 APAPADDDPPP 498
Score = 29.8 bits (67), Expect = 1.9
Identities = 15/72 (20%), Positives = 18/72 (25%), Gaps = 6/72 (8%)
Query: 215 ESKPSFRPPPSPSPAIRNNLPPPPMLPPPP--PPQMMGPPPPPPGLFGNMPPPPPHMGGM 272
E+ + R + P P P P P GP P P
Sbjct: 431 EALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAA----AAAAPARAAPA 486
Query: 273 APTLAMPPPPPP 284
A PPP
Sbjct: 487 AAPAPADDDPPP 498
Score = 29.1 bits (65), Expect = 3.5
Identities = 13/64 (20%), Positives = 14/64 (21%), Gaps = 10/64 (15%)
Query: 222 PPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPP 281
P P+PA P P P P P AP P P
Sbjct: 381 PVAQPAPAAA---APAAAAPAPAAPPAAPAAAPAA-------AAAARAVAAAPARRSPAP 430
Query: 282 PPPP 285
Sbjct: 431 EALA 434
Score = 28.3 bits (63), Expect = 5.1
Identities = 11/63 (17%), Positives = 13/63 (20%), Gaps = 3/63 (4%)
Query: 222 PPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPP 281
P + + A P P P PP P A P
Sbjct: 373 GPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPA---RRSPA 429
Query: 282 PPP 284
P
Sbjct: 430 PEA 432
Score = 27.9 bits (62), Expect = 8.0
Identities = 16/67 (23%), Positives = 19/67 (28%)
Query: 219 SFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAM 278
+FRP S A P+ P P P P P P A +A
Sbjct: 362 AFRPGQSGGGAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAA 421
Query: 279 PPPPPPP 285
P P
Sbjct: 422 APARRSP 428
>gnl|CDD|215533 PLN02983, PLN02983, biotin carboxyl carrier protein of acetyl-CoA
carboxylase.
Length = 274
Score = 36.7 bits (85), Expect = 0.007
Identities = 21/48 (43%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
Query: 238 PMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPPPPPP 285
P PPP P MM PPPP MPP P AP+ PPP P
Sbjct: 142 PQPPPPAPVVMMQPPPPHA-----MPPASPPAAQPAPSAPASSPPPTP 184
Score = 36.4 bits (84), Expect = 0.012
Identities = 22/64 (34%), Positives = 25/64 (39%), Gaps = 13/64 (20%)
Query: 223 PPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPPP 282
PP P+P + PPP +PP PP P P PP PT A PPP
Sbjct: 144 PPPPAPVVMMQPPPPHAMPPASPPAAQPAPSAPA------SSPP-------PTPASPPPA 190
Query: 283 PPPN 286
P
Sbjct: 191 KAPK 194
>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated.
Length = 484
Score = 36.9 bits (86), Expect = 0.009
Identities = 14/90 (15%), Positives = 20/90 (22%), Gaps = 20/90 (22%)
Query: 216 SKPSFRPPPSPSPAIRNNLPPPPMLPPPPP--------------------PQMMGPPPPP 255
+ + +PPP+ +PA + P P P P P
Sbjct: 58 APAAAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVARAAAPAAPEAQAPA 117
Query: 256 PGLFGNMPPPPPHMGGMAPTLAMPPPPPPP 285
A A P P
Sbjct: 118 APAERAAAENAARRLARAAAAAPRPRVPAD 147
Score = 31.1 bits (71), Expect = 0.66
Identities = 11/76 (14%), Positives = 14/76 (18%), Gaps = 7/76 (9%)
Query: 218 PSFRPPPSPSPAIRNNLPPPPMLPPP-PPPQMMGPPPP------PPGLFGNMPPPPPHMG 270
+ P PA P P P P ++ P P
Sbjct: 56 AAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVARAAAPAAPEAQA 115
Query: 271 GMAPTLAMPPPPPPPN 286
AP
Sbjct: 116 PAAPAERAAAENAARR 131
>gnl|CDD|219404 pfam07415, Herpes_LMP2, Gammaherpesvirus latent membrane protein
(LMP2) protein. This family consists of several
Gammaherpesvirus latent membrane protein (LMP2)
proteins. Epstein-Barr virus is a human Gammaherpesvirus
that infects and establishes latency in B lymphocytes in
vivo. The latent membrane protein 2 (LMP2) gene is
expressed in latently infected B cells and encodes two
protein isoforms, LMP2A and LMP2B, that are identical
except for an additional N-terminal 119 aa cytoplasmic
domain which is present in the LMP2A isoform. LMP2A is
thought to play a key role in either the establishment
or the maintenance of latency and/or the reactivation of
productive infection from the latent state. The
significance of LMP2B and its role in pathogenesis
remain unclear.
Length = 489
Score = 36.8 bits (85), Expect = 0.012
Identities = 21/83 (25%), Positives = 27/83 (32%), Gaps = 21/83 (25%)
Query: 214 NESKPS-FRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGM 272
N PS F + P PP+ P PPP G G+ +G
Sbjct: 28 NPYYPSSFGSSW--------DRPGPPVPEDYDAPS--HRPPPYGGSNGDRHGGYQPLGQQ 77
Query: 273 APTL----------AMPPPPPPP 285
P+L +PPPP P
Sbjct: 78 DPSLYAGLGQNGGGGLPPPPYSP 100
Score = 29.4 bits (66), Expect = 2.5
Identities = 11/48 (22%), Positives = 14/48 (29%), Gaps = 5/48 (10%)
Query: 238 PMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPPPPPP 285
P+ P P G G+ P P G + PP P
Sbjct: 8 PLGAGGP-----RSHGGPDGDEGDSNPYYPSSFGSSWDRPGPPVPEDY 50
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau;
Validated.
Length = 824
Score = 36.1 bits (84), Expect = 0.017
Identities = 16/75 (21%), Positives = 20/75 (26%), Gaps = 4/75 (5%)
Query: 211 SFRNESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMG 270
+ + + P +P PA P P PP P P P P
Sbjct: 414 AAAPAAAAAPAPAAAPQPAPA----PAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPA 469
Query: 271 GMAPTLAMPPPPPPP 285
A P P P
Sbjct: 470 PAAAPEPTAAPAPAP 484
Score = 33.4 bits (77), Expect = 0.14
Identities = 22/70 (31%), Positives = 25/70 (35%)
Query: 216 SKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPT 275
+ + P P A + P P P P PP P PPPPP A
Sbjct: 711 AGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAP 770
Query: 276 LAMPPPPPPP 285
A PPP PP
Sbjct: 771 AAAPPPSPPS 780
Score = 33.0 bits (76), Expect = 0.20
Identities = 16/64 (25%), Positives = 18/64 (28%)
Query: 222 PPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPP 281
P + +PA P P P P PP P G P P P P
Sbjct: 411 APAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAP 470
Query: 282 PPPP 285
P
Sbjct: 471 AAAP 474
Score = 32.7 bits (75), Expect = 0.25
Identities = 17/66 (25%), Positives = 17/66 (25%), Gaps = 1/66 (1%)
Query: 221 RPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPP 280
PP A P PP P P P P PP A A P
Sbjct: 440 APPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAP-AAPA 498
Query: 281 PPPPPN 286
P P
Sbjct: 499 APAAPA 504
Score = 31.9 bits (73), Expect = 0.41
Identities = 21/72 (29%), Positives = 24/72 (33%), Gaps = 3/72 (4%)
Query: 218 PSFRPPPSPSPAIRNNLPPPPMLPPP--PPPQMMGPPPPPPGLFGNMPPPP-PHMGGMAP 274
P+ P P+PA P P PP G P P +P PP P
Sbjct: 693 PAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPA 752
Query: 275 TLAMPPPPPPPN 286
PPPPP
Sbjct: 753 GAPAQPPPPPAP 764
Score = 30.7 bits (70), Expect = 1.0
Identities = 17/64 (26%), Positives = 20/64 (31%), Gaps = 2/64 (3%)
Query: 222 PPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPP 281
P P+P+PA + P P PP P P P P A P P
Sbjct: 433 PAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAP--APAAAPEPTAAPAPAPPAAPAP 490
Query: 282 PPPP 285
P
Sbjct: 491 AAAP 494
Score = 30.3 bits (69), Expect = 1.3
Identities = 17/69 (24%), Positives = 21/69 (30%)
Query: 218 PSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLA 277
P+ P P+ + P P P P P P PP P P AP+
Sbjct: 406 PAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQ 465
Query: 278 MPPPPPPPN 286
P P
Sbjct: 466 PAPAPAAAP 474
Score = 28.8 bits (65), Expect = 4.2
Identities = 20/61 (32%), Positives = 23/61 (37%), Gaps = 7/61 (11%)
Query: 225 SPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPPPPP 284
+PSPA + +P PP P PP G P PP PP P A PP
Sbjct: 730 APSPAADDPVPLPP--EPDDPPDPAGAPAQPPP-----PPAPAPAAAPAAAPPPSPPSEE 782
Query: 285 P 285
Sbjct: 783 E 783
Score = 28.0 bits (63), Expect = 7.5
Identities = 11/58 (18%), Positives = 12/58 (20%), Gaps = 3/58 (5%)
Query: 231 RNNLPPPPMLPPPPPPQMMGPPP---PPPGLFGNMPPPPPHMGGMAPTLAMPPPPPPP 285
R + P P P P P P P P P P
Sbjct: 384 RLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAP 441
Score = 27.6 bits (62), Expect = 8.3
Identities = 14/69 (20%), Positives = 18/69 (26%), Gaps = 8/69 (11%)
Query: 218 PSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLA 277
P+ P + + A P P P P P P P P P+ A
Sbjct: 394 PAAAAPSAAAAA-----PAAAPAPAAAAPAAAAAPAPAA---APQPAPAPAPAPAPPSPA 445
Query: 278 MPPPPPPPN 286
P
Sbjct: 446 GNAPAGGAP 454
Score = 27.6 bits (62), Expect = 9.0
Identities = 18/71 (25%), Positives = 19/71 (26%), Gaps = 10/71 (14%)
Query: 215 ESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAP 274
PSP PA + P P P P P PP P P AP
Sbjct: 445 AGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAA-----PAPAA-----AP 494
Query: 275 TLAMPPPPPPP 285
P P
Sbjct: 495 AAPAAPAAPAG 505
Score = 27.6 bits (62), Expect = 9.3
Identities = 10/64 (15%), Positives = 12/64 (18%), Gaps = 1/64 (1%)
Query: 222 PPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPP 281
P+ + P P P P P P P P
Sbjct: 392 GAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPA-PAPPSPAGNAPA 450
Query: 282 PPPP 285
P
Sbjct: 451 GGAP 454
>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional.
Length = 991
Score = 35.8 bits (82), Expect = 0.024
Identities = 21/71 (29%), Positives = 23/71 (32%), Gaps = 7/71 (9%)
Query: 222 PPPSPSPAIRNNLPPPPMLPP-------PPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAP 274
PP +P+P PP P PP G PP G PP G P
Sbjct: 697 PPRAPTPMRPPAAPPGRAQRPAAATGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARP 756
Query: 275 TLAMPPPPPPP 285
A P PP
Sbjct: 757 PAAAPGRARPP 767
Score = 34.3 bits (78), Expect = 0.075
Identities = 24/96 (25%), Positives = 33/96 (34%), Gaps = 8/96 (8%)
Query: 198 HWNKDTKQFFLQFSFRNESKPSFRPPPS-PSPAIRNNLPPPPMLPPPPPPQMMGPPPPPP 256
H + + ++ ++P P+ + + P M PPP P M PP PP
Sbjct: 652 HQPPQVEITPYKPTWTQIGHIPYQPSPTGANTMLPIQWAPGTMQPPPRAPTPMRPPAAPP 711
Query: 257 G-------LFGNMPPPPPHMGGMAPTLAMPPPPPPP 285
G G PP G P A P PP
Sbjct: 712 GRAQRPAAATGRARPPAAAPGRARPPAAAPGRARPP 747
Score = 32.0 bits (72), Expect = 0.45
Identities = 19/65 (29%), Positives = 20/65 (30%)
Query: 221 RPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPP 280
P +P A P PP P PP PG PPP P
Sbjct: 736 PPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGAPTPQPPPQAPPAPQQRPRGAPT 795
Query: 281 PPPPP 285
P PPP
Sbjct: 796 PQPPP 800
Score = 30.0 bits (67), Expect = 1.7
Identities = 22/76 (28%), Positives = 24/76 (31%), Gaps = 9/76 (11%)
Query: 218 PSFRPPPS--PSPAIRNNLPPPPMLPPPPPPQMMGPP-------PPPPGLFGNMPPPPPH 268
P+ PP+ P A R PP P PP PP G PP
Sbjct: 701 PTPMRPPAAPPGRAQRPAAATGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAA 760
Query: 269 MGGMAPTLAMPPPPPP 284
G P A P P P
Sbjct: 761 PGRARPPAAAPGAPTP 776
>gnl|CDD|223033 PHA03291, PHA03291, envelope glycoprotein I; Provisional.
Length = 401
Score = 35.7 bits (82), Expect = 0.025
Identities = 13/65 (20%), Positives = 16/65 (24%), Gaps = 7/65 (10%)
Query: 218 PSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLA 277
P+ P + A P P P P P + P A
Sbjct: 205 PATPRPTPRTTASPETTPTPSTTTSP-------PSTTIPAPSTTIAAPQAGTTPEAEGTP 257
Query: 278 MPPPP 282
PP P
Sbjct: 258 APPTP 262
Score = 28.0 bits (62), Expect = 5.9
Identities = 15/60 (25%), Positives = 17/60 (28%)
Query: 222 PPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPP 281
P + PP +P P P G PP P G P A P P
Sbjct: 217 SPETTPTPSTTTSPPSTTIPAPSTTIAAPQAGTTPEAEGTPAPPTPGGGEAPPANATPAP 276
>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional.
Length = 1352
Score = 35.5 bits (82), Expect = 0.028
Identities = 19/67 (28%), Positives = 24/67 (35%), Gaps = 4/67 (5%)
Query: 219 SFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAM 278
S SP+P ++ PPP PPP P PP P P L + P A +
Sbjct: 99 SPAREGSPTPPGPSSPDPPPPTPPPASP----PPSPAPDLSEMLRPVGSPGPPPAASPPA 154
Query: 279 PPPPPPP 285
P
Sbjct: 155 AGASPAA 161
Score = 32.5 bits (74), Expect = 0.33
Identities = 16/72 (22%), Positives = 20/72 (27%), Gaps = 4/72 (5%)
Query: 218 PSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLA 277
P PP SP P+ +L P P PP + A L+
Sbjct: 118 PPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLS 177
Query: 278 MPP----PPPPP 285
P P P
Sbjct: 178 SPEETARAPSSP 189
Score = 30.9 bits (70), Expect = 0.83
Identities = 20/85 (23%), Positives = 24/85 (28%), Gaps = 20/85 (23%)
Query: 222 PPPSPSPAIRNNLPPPPMLPPPPPPQMMGPP------------PPPPGLFGNMPP----- 264
PPPSP+P + L P PPP L + P
Sbjct: 126 PPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARA 185
Query: 265 ---PPPHMGGMAPTLAMPPPPPPPN 286
PP P A P PP +
Sbjct: 186 PSSPPAEPPPSTPPAAASPRPPRRS 210
Score = 30.9 bits (70), Expect = 0.95
Identities = 20/64 (31%), Positives = 24/64 (37%), Gaps = 9/64 (14%)
Query: 222 PPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPP 281
+P+ R P PP P PP PP PPP PPP ++ L
Sbjct: 93 STLAPASPAREGSPTPPGPSSPDPP----PPTPPPAS-----PPPSPAPDLSEMLRPVGS 143
Query: 282 PPPP 285
P PP
Sbjct: 144 PGPP 147
Score = 30.1 bits (68), Expect = 1.5
Identities = 15/71 (21%), Positives = 16/71 (22%)
Query: 216 SKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPT 275
SK + P P P P P P P P
Sbjct: 854 SKSKPAAAGGRARGKNGRRRPRPPEPRARPGAAAPPKAAAAAPPAGAPAPRPRPAPRVKL 913
Query: 276 LAMPPPPPPPN 286
MPP P P
Sbjct: 914 GPMPPGGPDPR 924
Score = 29.0 bits (65), Expect = 4.1
Identities = 20/76 (26%), Positives = 23/76 (30%), Gaps = 4/76 (5%)
Query: 213 RNESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPP-PPHMGG 271
+N + P P P PP P P P L G MPP P GG
Sbjct: 868 KNGRRRPRPPEPRARPGAAAPPKAAAAAPPAGAPAPRPRPAPRVKL-GPMPPGGPDPRGG 926
Query: 272 M--APTLAMPPPPPPP 285
P + P P
Sbjct: 927 FRRVPPGDLHTPAPSA 942
>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 576
Score = 35.5 bits (82), Expect = 0.031
Identities = 20/65 (30%), Positives = 20/65 (30%), Gaps = 10/65 (15%)
Query: 221 RPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPP 280
P PS A P P PP PP PP P P AP A P
Sbjct: 380 GAPAPPSAAWGAPTPAAPA----APPPAAAPPVPPA------APARPAAARPAPAPAPPA 429
Query: 281 PPPPP 285
PP
Sbjct: 430 AAAPP 434
Score = 32.4 bits (74), Expect = 0.30
Identities = 12/48 (25%), Positives = 14/48 (29%), Gaps = 4/48 (8%)
Query: 221 RPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPH 268
P +P+ PP P P P P P P PP
Sbjct: 392 PTPAAPAAPPPAAAPPVP--PAAPARPAAARPAPAPA--PPAAAAPPA 435
Score = 31.3 bits (71), Expect = 0.56
Identities = 9/43 (20%), Positives = 10/43 (23%)
Query: 215 ESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPG 257
+ P P PA P P PP P
Sbjct: 403 AAAPPVPPAAPARPAAARPAPAPAPPAAAAPPARSADPAAAAS 445
Score = 28.9 bits (65), Expect = 3.5
Identities = 13/37 (35%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
Query: 250 GPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPPPPPPN 286
G P PP +G P P P A P PP P
Sbjct: 380 GAPAPPSAAWGAPTPAAP--AAPPPAAAPPVPPAAPA 414
>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed.
Length = 1228
Score = 35.6 bits (83), Expect = 0.033
Identities = 12/67 (17%), Positives = 15/67 (22%), Gaps = 2/67 (2%)
Query: 219 SFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAM 278
+ P + +P P P P P P P A A
Sbjct: 35 DYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPA--PPAAAAPAAPPKPAAAAAA 92
Query: 279 PPPPPPP 285
P P
Sbjct: 93 AAAPAAP 99
Score = 35.3 bits (82), Expect = 0.034
Identities = 18/74 (24%), Positives = 21/74 (28%), Gaps = 4/74 (5%)
Query: 212 FRNESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGG 271
F + S P + + A P P P P PP P PP
Sbjct: 33 FADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAA----AAPAAPPKPAA 88
Query: 272 MAPTLAMPPPPPPP 285
A A P PP
Sbjct: 89 AAAAAAAPAAPPAA 102
Score = 33.7 bits (78), Expect = 0.11
Identities = 15/81 (18%), Positives = 23/81 (28%), Gaps = 7/81 (8%)
Query: 205 QFFLQFSFRNESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPP 264
+FF + + + P+ + + A + P P P P P P
Sbjct: 31 EFFADYGPGSTAAPTAAAAAAAAAA--SAPAAAPAAKAPAAPAPAPPAAAAPA-----AP 83
Query: 265 PPPHMGGMAPTLAMPPPPPPP 285
P P A PP
Sbjct: 84 PKPAAAAAAAAAPAAPPAAAA 104
Score = 30.6 bits (70), Expect = 1.2
Identities = 12/64 (18%), Positives = 12/64 (18%), Gaps = 3/64 (4%)
Query: 222 PPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPP 281
S A P P PP P PP A A P
Sbjct: 53 AAASAPAAAPAAKAPAAPAPAPPAAA---APAAPPKPAAAAAAAAAPAAPPAAAAAAAPA 109
Query: 282 PPPP 285
Sbjct: 110 AAAV 113
Score = 28.7 bits (65), Expect = 4.8
Identities = 14/68 (20%), Positives = 15/68 (22%), Gaps = 6/68 (8%)
Query: 214 NESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMA 273
S P+ P A P PP P P PP A
Sbjct: 54 AASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAP------AAPPAAAAAAA 107
Query: 274 PTLAMPPP 281
P A
Sbjct: 108 PAAAAVED 115
>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106). This
family of proteins are found in large numbers in the
Trichomonas vaginalis proteome. The function of this
protein is unknown.
Length = 422
Score = 35.0 bits (80), Expect = 0.034
Identities = 11/46 (23%), Positives = 15/46 (32%)
Query: 222 PPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPP 267
P P+ P ++N P + P PQ P P P
Sbjct: 201 PKPTQQPTVQNPAQQPTVQNPAQQPQQQPQQQPVQPAQQPTPQNPA 246
Score = 29.6 bits (66), Expect = 2.0
Identities = 13/64 (20%), Positives = 16/64 (25%)
Query: 204 KQFFLQFSFRNESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMP 263
K F R+ P P+ + P P PQ P N
Sbjct: 187 KTFTSSHGHRHRHAPKPTQQPTVQNPAQQPTVQNPAQQPQQQPQQQPVQPAQQPTPQNPA 246
Query: 264 PPPP 267
PP
Sbjct: 247 QQPP 250
Score = 28.9 bits (64), Expect = 3.9
Identities = 10/59 (16%), Positives = 19/59 (32%)
Query: 198 HWNKDTKQFFLQFSFRNESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPP 256
H ++ + Q + +N ++ P+ P + P P P PP
Sbjct: 195 HRHRHAPKPTQQPTVQNPAQQPTVQNPAQQPQQQPQQQPVQPAQQPTPQNPAQQPPQTE 253
Score = 28.1 bits (62), Expect = 6.8
Identities = 7/34 (20%), Positives = 8/34 (23%)
Query: 222 PPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPP 255
P P + P P P P P
Sbjct: 221 PAQQPQQQPQQQPVQPAQQPTPQNPAQQPPQTEQ 254
>gnl|CDD|216412 pfam01285, TEA, TEA/ATTS domain family.
Length = 424
Score = 34.4 bits (79), Expect = 0.054
Identities = 14/62 (22%), Positives = 20/62 (32%), Gaps = 2/62 (3%)
Query: 227 SPAIRNNLPPPPMLPP--PPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPPPPP 284
S A R++ + P P + P N H+ + P PPP
Sbjct: 136 SSAQRSSAQHLFYIIPGGPSWRTSIKPFSSSHYGSHNSSAYSDHLRPLQPYSGELPPPLG 195
Query: 285 PN 286
PN
Sbjct: 196 PN 197
Score = 27.8 bits (62), Expect = 7.4
Identities = 9/47 (19%), Positives = 12/47 (25%), Gaps = 6/47 (12%)
Query: 223 PPSPSPAIRNNLPPP-PMLPPPPPPQMMGPPPPPPGLFGNMPPPPPH 268
PS +I+ + P P G PPP
Sbjct: 153 GPSWRTSIKPFSSSHYGSHNSSAYSDHLRPLQPYSG-----ELPPPL 194
>gnl|CDD|218994 pfam06333, Med13_C, Mediator complex subunit 13 C-terminal.
Mediator is a large complex of up to 33 proteins that is
conserved from plants through fungi to humans - the
number and representation of individual subunits varying
with species. It is arranged into four different
sections, a core, a head, a tail and a kinase-activity
part, and the number of subunits within each of these is
what varies with species. Overall, Mediator regulates
the transcriptional activity of RNA polymerase II but it
would appear that each of the four different sections
has a slightly different function. Med13 is part of the
ancillary kinase module, together with Med12, CDK8 and
CycC, which in yeast is implicated in transcriptional
repression, though most of this activity is likely
attributable to the CDK8 kinase. The large Med12 and
Med13 proteins are required for specific developmental
processes in Drosophila, zebrafish, and Caenorhabditis
elegans but their biochemical functions are not
understood.
Length = 406
Score = 34.2 bits (79), Expect = 0.057
Identities = 16/56 (28%), Positives = 19/56 (33%), Gaps = 2/56 (3%)
Query: 207 FLQFSFRNESKPSFRPPPS--PSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFG 260
F +F+ N S P P PSP N P PP+ PP P
Sbjct: 242 FSRFNTSNSSTPQSTPCTLSFPSPDQFGNAPTPPLGENGNDNAPPVTPPGSPSESD 297
Score = 28.1 bits (63), Expect = 5.9
Identities = 19/71 (26%), Positives = 24/71 (33%), Gaps = 4/71 (5%)
Query: 215 ESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAP 274
++ P P P P + P P + P P FGN P PP +G
Sbjct: 226 DTDPKLVPDPPTQPIPFSRFNTSNSSTPQSTPCTLSFPSPDQ--FGNAPTPP--LGENGN 281
Query: 275 TLAMPPPPPPP 285
A P PP
Sbjct: 282 DNAPPVTPPGS 292
>gnl|CDD|233692 TIGR02031, BchD-ChlD, magnesium chelatase ATPase subunit D. This
model represents one of two ATPase subunits of the
trimeric magnesium chelatase responsible for insertion
of magnesium ion into protoporphyrin IX. This is an
essential step in the biosynthesis of both chlorophyll
and bacteriochlorophyll. This subunit is found in green
plants, photosynthetic algae, cyanobacteria and other
photosynthetic bacteria. Unlike subunit I (TIGR02030),
this subunit is not found in archaea [Biosynthesis of
cofactors, prosthetic groups, and carriers, Chlorophyll
and bacteriochlorphyll].
Length = 589
Score = 33.6 bits (77), Expect = 0.10
Identities = 14/53 (26%), Positives = 14/53 (26%), Gaps = 8/53 (15%)
Query: 234 LPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPPPPPPN 286
P P PPPP PPPP P P P P
Sbjct: 264 TRLPEPEPQPPPP----PPPPEPPEPEEEPDEPDQ----TDPDDGEETDQIPE 308
Score = 29.4 bits (66), Expect = 2.3
Identities = 18/58 (31%), Positives = 20/58 (34%), Gaps = 7/58 (12%)
Query: 229 AIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPPPPPPN 286
A+ L P P P PQ PPPPPP PP P P P +
Sbjct: 254 AVELVLLPRATRLPEPEPQP-PPPPPPP------EPPEPEEEPDEPDQTDPDDGEETD 304
>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 614
Score = 33.6 bits (77), Expect = 0.11
Identities = 19/98 (19%), Positives = 29/98 (29%), Gaps = 11/98 (11%)
Query: 188 VDKGDTKFWTHWNKDTKQFFLQFSFRNESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQ 247
D + K F Q + +PS SPSP+ +++ P P
Sbjct: 364 QKGDDASGGRGPKQHIKPVFTQPA--AAPQPSAAAAASPSPS-QSSAAAQPSAPQSATQP 420
Query: 248 MMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPPPPPP 285
PP ++ PP + P P P
Sbjct: 421 AGTPPT------VSVDPPAAVP--VNPPSTAPQAVRPA 450
Score = 29.0 bits (65), Expect = 3.0
Identities = 10/46 (21%), Positives = 14/46 (30%)
Query: 222 PPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPP 267
P +P A + PP + PP + PP P
Sbjct: 410 QPSAPQSATQPAGTPPTVSVDPPAAVPVNPPSTAPQAVRPAQFKEE 455
>gnl|CDD|114709 pfam06003, SMN, Survival motor neuron protein (SMN). This family
consists of several eukaryotic survival motor neuron
(SMN) proteins. The Survival of Motor Neurons (SMN)
protein, the product of the spinal muscular
atrophy-determining gene, is part of a large
macromolecular complex (SMN complex) that functions in
the assembly of spliceosomal small nuclear
ribonucleoproteins (snRNPs). The SMN complex functions
as a specificity factor essential for the efficient
assembly of Sm proteins on U snRNAs and likely protects
cells from illicit, and potentially deleterious,
non-specific binding of Sm proteins to RNAs.
Length = 264
Score = 33.0 bits (75), Expect = 0.12
Identities = 27/89 (30%), Positives = 32/89 (35%), Gaps = 12/89 (13%)
Query: 189 DKGDTKFWTHWNKDTKQFFL-QFSFRNESKPSFRPPPSPSPAIRNNLPP--PPMLPPPPP 245
D+ D +H + F + S N P PPP P P PP L PP
Sbjct: 143 DESDRSSHSHEVRSKSNFPMGPPSPWNPRFPPGPPPPPPGFGRHGEKPSGWPPFLSGWPP 202
Query: 246 PQMMGPPPPPPGLFGNMPPPPPHMGGMAP 274
P +GPP M PPPP M
Sbjct: 203 PFPLGPP---------MIPPPPPMSPDFG 222
Score = 32.7 bits (74), Expect = 0.19
Identities = 27/83 (32%), Positives = 31/83 (37%), Gaps = 15/83 (18%)
Query: 214 NESKPSFRPPPSPSPAIRNNLPPP------PMLPPPPPPQM----MGPPPPPPGLFGNMP 263
+ES S S + PP P PPPPPP P PP L G P
Sbjct: 143 DESDRSSHSHEVRSKSNFPMGPPSPWNPRFPPGPPPPPPGFGRHGEKPSGWPPFLSGWPP 202
Query: 264 PPPPHMGGMAPTLAMPPPPPPPN 286
P P P + PPPP P+
Sbjct: 203 PFPL-----GPPMIPPPPPMSPD 220
>gnl|CDD|184281 PRK13729, PRK13729, conjugal transfer pilus assembly protein TraB;
Provisional.
Length = 475
Score = 33.3 bits (76), Expect = 0.12
Identities = 17/49 (34%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 222 PPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLF-GNMPPPPPHM 269
P SP P P P PPQ PPP + GN PPP +
Sbjct: 136 PQMPASPPGPEGEPQPGNTPVSFPPQGSVAVPPPTAFYPGNGVTPPPQV 184
>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau;
Validated.
Length = 647
Score = 33.3 bits (77), Expect = 0.15
Identities = 18/68 (26%), Positives = 22/68 (32%), Gaps = 8/68 (11%)
Query: 220 FRP-PPSPSPAIRNNLPPPPMLPPPPPPQMMGPP--PPPPGLFGNMPPPPPHMGGMAPTL 276
F P P P P + PP P Q P P +PPPP AP +
Sbjct: 359 FHPAAPLPEPEV-----PPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAV 413
Query: 277 AMPPPPPP 284
+P
Sbjct: 414 PLPETTSQ 421
Score = 30.2 bits (69), Expect = 1.3
Identities = 12/70 (17%), Positives = 20/70 (28%), Gaps = 1/70 (1%)
Query: 216 SKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPT 275
++ + P + +P +PPPP P P + P L G
Sbjct: 381 AQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVP-LPETTSQLLAARQQLQRAQGATKAK 439
Query: 276 LAMPPPPPPP 285
+ P
Sbjct: 440 KSEPAAASRA 449
Score = 29.4 bits (67), Expect = 2.4
Identities = 9/64 (14%), Positives = 12/64 (18%), Gaps = 3/64 (4%)
Query: 222 PPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPP 281
+ A + PP PPPP P L +
Sbjct: 379 ASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLP---ETTSQLLAARQQLQRAQGA 435
Query: 282 PPPP 285
Sbjct: 436 TKAK 439
Score = 28.3 bits (64), Expect = 5.0
Identities = 13/68 (19%), Positives = 16/68 (23%), Gaps = 3/68 (4%)
Query: 218 PSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLA 277
P P + A P PP + PPP P P + LA
Sbjct: 368 PEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQ---QAPAVPLPETTSQLLA 424
Query: 278 MPPPPPPP 285
Sbjct: 425 ARQQLQRA 432
Score = 27.9 bits (63), Expect = 7.9
Identities = 11/54 (20%), Positives = 12/54 (22%), Gaps = 3/54 (5%)
Query: 236 PPPMLPPPPPPQMMGPPPP---PPGLFGNMPPPPPHMGGMAPTLAMPPPPPPPN 286
P LP P P P PP P + P P
Sbjct: 361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVP 414
Score = 27.9 bits (63), Expect = 8.4
Identities = 11/70 (15%), Positives = 13/70 (18%), Gaps = 2/70 (2%)
Query: 216 SKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPT 275
S P S P P PP P P +P +
Sbjct: 371 PPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAP--AVPLPETTSQLLAARQQ 428
Query: 276 LAMPPPPPPP 285
L
Sbjct: 429 LQRAQGATKA 438
>gnl|CDD|219569 pfam07777, MFMR, G-box binding protein MFMR. This region is found
to the N-terminus of the pfam00170 transcription factor
domain. It is between 150 and 200 amino acids in length.
The N-terminal half is rather rich in proline residues
and has been termed the PRD (proline rich domain),
whereas the C-terminal half is more polar and has been
called the MFMR (multifunctional mosaic region). It has
been suggested that this family is composed of three
sub-families called A, B and C, classified according to
motif composition. It has been suggested that some of
these motifs may be involved in mediating
protein-protein interactions. The MFMR region contains a
nuclear localisation signal in bZIP opaque and GBF-2.
The MFMR also contains a transregulatory activity in
TAF-1. The MFMR in CPRF-2 contains cytoplasmic retention
signals.
Length = 189
Score = 32.5 bits (74), Expect = 0.16
Identities = 20/79 (25%), Positives = 24/79 (30%), Gaps = 12/79 (15%)
Query: 215 ESKPSFRPPPSPSPAIRNNLPP------------PPMLPPPPPPQMMGPPPPPPGLFGNM 262
E KPS P + P PP + P P P ++G
Sbjct: 6 EGKPSKSSPKTSVQEDTPTPTVYPDWSAMQAYYGPRPPPPYFNSSVASSPQPHPYMWGPQ 65
Query: 263 PPPPPHMGGMAPTLAMPPP 281
P P G P AM PP
Sbjct: 66 QPMMPPYGTPPPYAAMYPP 84
>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 620
Score = 33.0 bits (75), Expect = 0.17
Identities = 18/65 (27%), Positives = 22/65 (33%), Gaps = 6/65 (9%)
Query: 222 PPPSPSPAIRNNLPPPPMLPPPPPPQMMGP-PPPPPGLFGNMPPPPPHMGGMAPTLAMPP 280
P P+ SP ++ P P P P + GP P PG P P P P
Sbjct: 382 PSPAGSPDVKKKAPEPD---LPQPDRHPGPAKPEAPGARPAELPSPA--SAPTPEQQPPV 436
Query: 281 PPPPP 285
P
Sbjct: 437 ARSAP 441
Score = 29.9 bits (67), Expect = 1.6
Identities = 13/53 (24%), Positives = 14/53 (26%), Gaps = 3/53 (5%)
Query: 213 RNESKPSFRPPPSPSPA---IRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNM 262
P RP PSPA PP P PP P +
Sbjct: 409 AKPEAPGARPAELPSPASAPTPEQQPPVARSAPLPPSPQASAPRNVASGKPGV 461
>gnl|CDD|152960 pfam12526, DUF3729, Protein of unknown function (DUF3729). This
family of proteins is found in viruses. Proteins in this
family are typically between 145 and 1707 amino acids in
length. The family is found in association with
pfam01443, pfam01661, pfam05417, pfam01660, pfam00978.
There is a single completely conserved residue L that
may be functionally important.
Length = 115
Score = 31.2 bits (71), Expect = 0.18
Identities = 20/70 (28%), Positives = 25/70 (35%)
Query: 216 SKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPT 275
S S P P PP++ PPP + PPP P P P + G A
Sbjct: 27 SCFSPPESAHPDDPPPVGDPRPPVVDTPPPVSAVWVLPPPSEPAAPPPDPEPPVPGPAGP 86
Query: 276 LAMPPPPPPP 285
+ PP P
Sbjct: 87 PSPLAPPAPA 96
>gnl|CDD|130689 TIGR01628, PABP-1234, polyadenylate binding protein, human types 1,
2, 3, 4 family. These eukaryotic proteins recognize the
poly-A of mRNA and consists of four tandem RNA
recognition domains at the N-terminus (rrm: pfam00076)
followed by a PABP-specific domain (pfam00658) at the
C-terminus. The protein is involved in the transport of
mRNA's from the nucleus to the cytoplasm. There are four
paralogs in Homo sapiens which are expressed in testis
(GP:11610605_PABP3 ), platelets (SP:Q13310_PABP4 ),
broadly expressed (SP:P11940_PABP1) and of unknown
tissue range (SP:Q15097_PABP2).
Length = 562
Score = 32.9 bits (75), Expect = 0.19
Identities = 13/65 (20%), Positives = 14/65 (21%), Gaps = 6/65 (9%)
Query: 221 RPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPP 280
R P+P P P P P N PP M P
Sbjct: 418 RMSMMPTPM-GPGGPLRPNGLAPMNAVR-----APSRNAQNAAQKPPMQPVMYPPNYQSL 471
Query: 281 PPPPP 285
P
Sbjct: 472 PLSQD 476
Score = 32.9 bits (75), Expect = 0.21
Identities = 22/103 (21%), Positives = 28/103 (27%), Gaps = 22/103 (21%)
Query: 201 KDTKQFFLQFSFRNESKPSFRPPPSPSPAIRNNLPPP-----------------PMLPPP 243
K+ ++ LQ F + +P R P SP PP P +
Sbjct: 364 KEQRRAHLQDQF-MQLQPRMRQLPMGSPMGGAMGQPPYYGQGPQQQFNGQPLGWPRMSMM 422
Query: 244 PPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPPPPPPN 286
P P G P P GL P PP
Sbjct: 423 PTPMGPGGPLRPNGL----APMNAVRAPSRNAQNAAQKPPMQP 461
>gnl|CDD|237378 PRK13406, bchD, magnesium chelatase subunit D; Provisional.
Length = 584
Score = 32.7 bits (75), Expect = 0.25
Identities = 18/60 (30%), Positives = 20/60 (33%), Gaps = 5/60 (8%)
Query: 221 RPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPP 280
R P P P PPP PPPPP PP + A A+PP
Sbjct: 257 RLPAPPQPP---EEEPPP--PPPPPEDDDDPPEDEEEQDDAEDRALEEIVLEAVRAALPP 311
Score = 32.3 bits (74), Expect = 0.33
Identities = 13/47 (27%), Positives = 13/47 (27%), Gaps = 6/47 (12%)
Query: 239 MLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPPPPPP 285
LP PP P PPPPPP PP
Sbjct: 257 RLPAPPQPPEEEPPPPPP------PPEDDDDPPEDEEEQDDAEDRAL 297
>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional.
Length = 226
Score = 31.9 bits (73), Expect = 0.27
Identities = 18/65 (27%), Positives = 23/65 (35%), Gaps = 3/65 (4%)
Query: 221 RPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPP 280
R + +P++ PP P P P + PP P P P P P P
Sbjct: 76 RAGDAAAPSLDPATVAPPNTPVEPEPAPVEPPKPKP---VEKPKPKPKPQQKVEAPPAPK 132
Query: 281 PPPPP 285
P P P
Sbjct: 133 PEPKP 137
Score = 31.1 bits (71), Expect = 0.44
Identities = 17/68 (25%), Positives = 18/68 (26%), Gaps = 8/68 (11%)
Query: 218 PSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLA 277
PS P P P P+ PP P P P P PP AP
Sbjct: 83 PSLDPATVAPPNTPVEPEPAPVEPPKPKPV---EKPKPKPKPQQKVEAPP-----APKPE 134
Query: 278 MPPPPPPP 285
P
Sbjct: 135 PKPVVEEK 142
>gnl|CDD|222449 pfam13908, Shisa, Wnt and FGF inhibitory regulator. Shisa is a
transcription factor-type molecule that physically
interacts with immature forms of the Wnt receptor
Frizzled and the FGF receptor within the endoplasmic
reticulum to inhibit their post-translational maturation
and trafficking to the cell surface.
Length = 177
Score = 31.3 bits (71), Expect = 0.29
Identities = 14/48 (29%), Positives = 17/48 (35%), Gaps = 3/48 (6%)
Query: 209 QFSFRNESKPSFRPPPSPSPAIRNNLPPPP---MLPPPPPPQMMGPPP 253
Q S P + + +P PP PPP Q GPPP
Sbjct: 129 QPPSTAPSYPGPQYQGYHPMPPQPGMPAPPYSLQYPPPGLLQPQGPPP 176
Score = 28.6 bits (64), Expect = 2.4
Identities = 19/64 (29%), Positives = 20/64 (31%), Gaps = 12/64 (18%)
Query: 221 RPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPP 280
P P P P P P PP P MP PP + P L P
Sbjct: 125 TPLPQPPST-------APSYPGPQYQGYHPMPPQP-----GMPAPPYSLQYPPPGLLQPQ 172
Query: 281 PPPP 284
PPP
Sbjct: 173 GPPP 176
>gnl|CDD|237866 PRK14952, PRK14952, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 584
Score = 32.2 bits (73), Expect = 0.35
Identities = 17/70 (24%), Positives = 22/70 (31%), Gaps = 7/70 (10%)
Query: 201 KDTKQFFLQFSFRNESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFG 260
D + LQ R E++ P + P P P P Q P P P
Sbjct: 366 SDAESALLQRVERIETRLDMSIPANLLHNAPQAAPAPSAAAPEPKHQ---PAPEPRP--- 419
Query: 261 NMPPPPPHMG 270
+ P P G
Sbjct: 420 -VLAPTPASG 428
>gnl|CDD|221404 pfam12067, Sox_C_TAD, Sox C-terminal transactivation domain. This
domain is found at the C-terminus of the Sox family of
transcription factors. It is found associated with
pfam00505. It binds to the Armadillo repeats (pfam00514)
in Catenin beta-1 (CTNNB1), which is involved in
transcriptional regulation. It functions as a
transactivating domain (TAD).
Length = 197
Score = 31.2 bits (71), Expect = 0.45
Identities = 14/66 (21%), Positives = 23/66 (34%)
Query: 218 PSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLA 277
S+ P + +PA+ + +P P + P PP ++ P L
Sbjct: 57 SSYAPQNAHAPALLRQMAVTENIPQGSPAPSIMGCPTPPQMYYGQMYVPECAKHHPVQLG 116
Query: 278 MPPPPP 283
PPP
Sbjct: 117 QLSPPP 122
Score = 27.4 bits (61), Expect = 7.1
Identities = 20/89 (22%), Positives = 26/89 (29%), Gaps = 19/89 (21%)
Query: 215 ESKPSFRPPPSP-----------SPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMP 263
ES+P+F PP S N P +L + + P P + G
Sbjct: 34 ESEPAFFSPPCQEDCQMMPYGYNSSYAPQNAHAPALLRQMAVTENIPQGSPAPSIMGCPT 93
Query: 264 PP--------PPHMGGMAPTLAMPPPPPP 284
PP P P PPP
Sbjct: 94 PPQMYYGQMYVPECAKHHPVQLGQLSPPP 122
>gnl|CDD|166942 PRK00404, tatB, sec-independent translocase; Provisional.
Length = 141
Score = 30.6 bits (69), Expect = 0.49
Identities = 17/46 (36%), Positives = 19/46 (41%)
Query: 222 PPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPP 267
PP + SPA PPP P PP P P + PP PP
Sbjct: 93 PPTAQSPAPAVPTPPPTSTPAVPPAPAAAVPAPAAAPPPSDPPQPP 138
Score = 29.4 bits (66), Expect = 1.1
Identities = 14/46 (30%), Positives = 17/46 (36%)
Query: 240 LPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPPPPPP 285
L PP PP+ + PP PPP + P A P P
Sbjct: 82 LTPPAPPEPVTPPTAQSPAPAVPTPPPTSTPAVPPAPAAAVPAPAA 127
Score = 29.0 bits (65), Expect = 1.7
Identities = 19/50 (38%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 235 PPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPPPPP 284
PP P+ PP P PPP PP P AP A PP PP
Sbjct: 87 PPEPVTPPTAQSPAPAVPTPPPTS-TPAVPPAPAAAVPAPAAAPPPSDPP 135
Score = 27.9 bits (62), Expect = 3.3
Identities = 17/53 (32%), Positives = 18/53 (33%)
Query: 233 NLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPPPPPP 285
PP P P PP P P + P PP P A PPP P
Sbjct: 82 LTPPAPPEPVTPPTAQSPAPAVPTPPPTSTPAVPPAPAAAVPAPAAAPPPSDP 134
Score = 27.9 bits (62), Expect = 3.4
Identities = 19/64 (29%), Positives = 19/64 (29%), Gaps = 9/64 (14%)
Query: 222 PPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPP 281
PP P P P P PPP PP P P P A P
Sbjct: 84 PPAPPEPVTPPTAQSPAPAVPTPPPTSTPAVPPAP----AAAVPAP-----AAAPPPSDP 134
Query: 282 PPPP 285
P PP
Sbjct: 135 PQPP 138
Score = 27.9 bits (62), Expect = 3.7
Identities = 16/52 (30%), Positives = 20/52 (38%), Gaps = 3/52 (5%)
Query: 238 PMLPPPPPPQMMGPPPPPPGLFGNMPPP---PPHMGGMAPTLAMPPPPPPPN 286
P+ PP PP + P P PPP P A + P PPP+
Sbjct: 81 PLTPPAPPEPVTPPTAQSPAPAVPTPPPTSTPAVPPAPAAAVPAPAAAPPPS 132
>gnl|CDD|130706 TIGR01645, half-pint, poly-U binding splicing factor, half-pint
family. The proteins represented by this model contain
three RNA recognition motifs (rrm: pfam00076) and have
been characterized as poly-pyrimidine tract binding
proteins associated with RNA splicing factors. In the
case of PUF60 (GP|6176532), in complex with p54, and in
the presence of U2AF, facilitates association of U2
snRNP with pre-mRNA.
Length = 612
Score = 31.6 bits (71), Expect = 0.51
Identities = 16/79 (20%), Positives = 29/79 (36%), Gaps = 11/79 (13%)
Query: 218 PSFRPPPSPSPAIRNNLPPPPMLPPP-PPPQMMGPPPP------PPGLF-GNMPPPPPHM 269
P + P +PS ++ ++ ++ + + P P PG P PPP +
Sbjct: 326 PRAQSPATPSSSLPTDIGNKAVVSSAKKEAEEVPPLPQAAPAVVKPGPMEIPTPVPPPGL 385
Query: 270 G---GMAPTLAMPPPPPPP 285
+AP + P P
Sbjct: 386 AIPSLVAPPGLVAPTEINP 404
Score = 27.7 bits (61), Expect = 8.1
Identities = 17/60 (28%), Positives = 22/60 (36%), Gaps = 5/60 (8%)
Query: 222 PPPSPSPAIRNNLPPPPM-LPPPPPPQMMGPPP--PPPGLFGNMPPPPPHMGGMAPTLAM 278
P A + P PM +P P PP + P PPGL P + +P M
Sbjct: 357 EVPPLPQAAPAVVKPGPMEIPTPVPPPGLAIPSLVAPPGLVAPTEINPSFLA--SPRKKM 414
>gnl|CDD|204069 pfam08799, PRP4, pre-mRNA processing factor 4 (PRP4) like. This
small domain is found on PRP4 ribonuleoproteins. PRP4
is a U4/U6 small nuclear ribonucleoprotein that is
involved in pre-mRNA processing.
Length = 30
Score = 27.7 bits (63), Expect = 0.52
Identities = 9/13 (69%), Positives = 12/13 (92%)
Query: 21 ESNRDRRERLRQL 33
E++ DRRERLR+L
Sbjct: 17 ETDADRRERLRKL 29
>gnl|CDD|218350 pfam04959, ARS2, Arsenite-resistance protein 2. Arsenite is a
carcinogenic compound which can act as a co-mutagen by
inhibiting DNA repair. Arsenite-resistance protein 2 is
thought to play a role in arsenite resistance.
Length = 211
Score = 30.9 bits (70), Expect = 0.61
Identities = 19/57 (33%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Query: 218 PSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMG---PPPPPPGLFGNMPPPPPHMGG 271
P +P P P P P PP P +M P PP G PP PP+ G
Sbjct: 128 PEIKPLQPPKPDPGGLAPGLPGYPPQTPQALMPYGQPRPPMMGYGRGGPPFPPNQYG 184
>gnl|CDD|222997 PHA03132, PHA03132, thymidine kinase; Provisional.
Length = 580
Score = 31.3 bits (71), Expect = 0.64
Identities = 16/90 (17%), Positives = 23/90 (25%), Gaps = 9/90 (10%)
Query: 199 WNKDTKQFFLQFSFRNESKPSFRPPPSPSPAI---RNNLPPPPMLPPPPPPQMMGPPPPP 255
+ ++ + +F E P S S A ++L PP P
Sbjct: 16 SSDESPEGSRDENFDAERDDFLTPLGSTSEATSEDDDDLYPPRETGSGGGVATSTIYTVP 75
Query: 256 PGLFGNMPPPPPHMGGMAPTLAMPPPPPPP 285
PP P P PP
Sbjct: 76 ------RPPRGPEQTLDKPDSLPASRELPP 99
>gnl|CDD|235743 PRK06208, PRK06208, hypothetical protein; Provisional.
Length = 274
Score = 30.7 bits (70), Expect = 0.67
Identities = 8/33 (24%), Positives = 9/33 (27%)
Query: 236 PPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPH 268
+L P PP P PPP
Sbjct: 1 MSAVLSRAADTAAALSIPQPPREGLWFPRPPPF 33
Score = 27.3 bits (61), Expect = 9.7
Identities = 8/31 (25%), Positives = 10/31 (32%)
Query: 226 PSPAIRNNLPPPPMLPPPPPPQMMGPPPPPP 256
S + L P PP+ P PP
Sbjct: 1 MSAVLSRAADTAAALSIPQPPREGLWFPRPP 31
>gnl|CDD|218549 pfam05308, Mito_fiss_reg, Mitochondrial fission regulator. In
eukaryotes, this family of proteins induces
mitochondrial fission.
Length = 248
Score = 30.5 bits (69), Expect = 0.78
Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 6/47 (12%)
Query: 215 ESKPSFRPPPSPSPAIRNNLP---PPPMLPPPPPPQMMGPPPPPPGL 258
P S + + + P P +PPPPPP PPPPPP L
Sbjct: 155 LLSSDESVPSSSTTSFPISPPTEEPVLEVPPPPPP---PPPPPPPSL 198
Score = 28.6 bits (64), Expect = 3.3
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 216 SKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGL 258
S SF P P+ +PPPP PPPPPP + L
Sbjct: 166 STTSF-PISPPTEEPVLEVPPPPPPPPPPPPPSLQQSTSAIDL 207
Score = 28.6 bits (64), Expect = 3.7
Identities = 18/66 (27%), Positives = 22/66 (33%), Gaps = 9/66 (13%)
Query: 215 ESKPSFRPPPSPSPAIRNNLPPPPMLPPPPP---PQMMGPPPPPPGLFGNMPPPPPHMGG 271
+ + + S P PP P + PPPPPP PPPPP
Sbjct: 145 QEQSNSTTSDLLSSDESVPSSSTTSFPISPPTEEPVLEVPPPPPP------PPPPPPPSL 198
Query: 272 MAPTLA 277
T A
Sbjct: 199 QQSTSA 204
>gnl|CDD|144451 pfam00859, CTF_NFI, CTF/NF-I family transcription modulation
region.
Length = 295
Score = 30.8 bits (69), Expect = 0.83
Identities = 20/55 (36%), Positives = 28/55 (50%)
Query: 201 KDTKQFFLQFSFRNESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPP 255
+D + F+Q S+ + +P S + N+ P PML PPPPP M P P P
Sbjct: 187 QDPLKEFVQLVCDPSSQQAGQPNGSGQGKVPNHFLPTPMLAPPPPPPMARPVPLP 241
>gnl|CDD|223061 PHA03369, PHA03369, capsid maturational protease; Provisional.
Length = 663
Score = 30.7 bits (69), Expect = 0.86
Identities = 14/64 (21%), Positives = 17/64 (26%), Gaps = 2/64 (3%)
Query: 222 PPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPP 281
P+ R P P M PP P F P +P + P
Sbjct: 374 THTGPADRQRPQRPDGIPYSVPARSPMTAYPPVP--QFCGDPGLVSPYNPQSPGTSYGPE 431
Query: 282 PPPP 285
P P
Sbjct: 432 PVGP 435
>gnl|CDD|225482 COG2930, COG2930, Uncharacterized conserved protein [Function
unknown].
Length = 227
Score = 30.2 bits (68), Expect = 0.90
Identities = 23/86 (26%), Positives = 30/86 (34%), Gaps = 12/86 (13%)
Query: 60 LTLHNNEGSYLAHTQGKKHQANLARRAAKEAKDAPQQPAPEK-----------PRVEPKK 108
LT+ N +GS A ++ K + E + P Q P P V
Sbjct: 8 LTIPNAQGSSFA-SETNKAAKTNSSFVLTEQRLGPDQVIPPSLLERAKGIVIIPSVLKAG 66
Query: 109 FVKIGRPGYRVTKQRDPSNGQQSLLF 134
FV GR G V R P N + F
Sbjct: 67 FVIGGRYGQGVLVARLPDNTWSAPSF 92
>gnl|CDD|215145 PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygenase NCED.
Length = 590
Score = 30.8 bits (70), Expect = 0.94
Identities = 16/70 (22%), Positives = 22/70 (31%), Gaps = 11/70 (15%)
Query: 208 LQFSFRNESKPSFRPPPS--------PSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLF 259
+ + S S PPS P+ + L P +LP P P PP L
Sbjct: 11 QSHASSSSSSSSQSSPPSSTSPRPRRRKPSASSLLHTPSILPLPKLSS---PSPPSVTLP 67
Query: 260 GNMPPPPPHM 269
P +
Sbjct: 68 PAATTQTPQL 77
>gnl|CDD|219053 pfam06482, Endostatin, Collagenase NC10 and Endostatin. NC10
stands for Non-helical region 10 and is taken from human
COL15A1. A mutation in this region in human COL18A1 is
associated with an increased risk of prostrate cancer.
This domain is cleaved from the precursor and forms
endostatin. Endostatin is a key tumour suppressor and
has been used highly successfully to treat cancer. It is
a potent angiogenesis inhibitor. Endostatin also binds a
zinc ion near the N-terminus; this is likely to be of
structural rather than functional importance according
to.
Length = 291
Score = 30.5 bits (69), Expect = 0.95
Identities = 16/61 (26%), Positives = 19/61 (31%), Gaps = 9/61 (14%)
Query: 224 PSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPPPP 283
P P PPP +L P P++ PP P P A PP
Sbjct: 52 LVPLPGTTATQPPPVVLTPWSDPRLPDPP---------HLPDPQTHSATAHRNPHPPLNS 102
Query: 284 P 284
P
Sbjct: 103 P 103
Score = 28.2 bits (63), Expect = 4.6
Identities = 13/38 (34%), Positives = 15/38 (39%)
Query: 248 MMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPPPPPP 285
++G P PG PPP P L PP P P
Sbjct: 48 LLGELVPLPGTTATQPPPVVLTPWSDPRLPDPPHLPDP 85
>gnl|CDD|165468 PHA03201, PHA03201, uracil DNA glycosylase; Provisional.
Length = 318
Score = 30.6 bits (69), Expect = 0.96
Identities = 25/86 (29%), Positives = 30/86 (34%), Gaps = 17/86 (19%)
Query: 213 RNESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPP----------------PP 256
R+ S R P P P + P PP PP PPP P
Sbjct: 5 RSRSPSPPRRPSPPRPTPPRSPDASPEETPPSPPGPGAEPPPGRAAGPAAPRRRPRGCPA 64
Query: 257 GL-FGNMPPPPPHMGGMAPTLAMPPP 281
G+ F + PP P +G A PPP
Sbjct: 65 GVTFSSSAPPRPPLGLDDAPAATPPP 90
Score = 29.5 bits (66), Expect = 2.0
Identities = 15/49 (30%), Positives = 15/49 (30%)
Query: 236 PPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPPPPP 284
P P P P PP P PP PP G P P P
Sbjct: 7 RSPSPPRRPSPPRPTPPRSPDASPEETPPSPPGPGAEPPPGRAAGPAAP 55
>gnl|CDD|128776 smart00500, SFM, Splicing Factor Motif, present in Prp18 and
Pr04.
Length = 44
Score = 27.7 bits (62), Expect = 0.96
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 21 ESNRDRRERLRQLALETIDLNKD 43
E +++RR+RLRQL + +L+K
Sbjct: 22 EDDQERRQRLRQLLIVQDELDKG 44
>gnl|CDD|205862 pfam13686, DrsE_2, DsrE/DsrF/DrsH-like family. DsrE is a small
soluble protein involved in intracellular sulfur
reduction. The family also includes YrkE proteins.
Length = 156
Score = 29.5 bits (67), Expect = 0.99
Identities = 8/35 (22%), Positives = 12/35 (34%), Gaps = 2/35 (5%)
Query: 242 PPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTL 276
+M GP P +P +M GM +
Sbjct: 56 KSFLEKMFGPMMPRGS--AKLPLSKMNMAGMGTKM 88
>gnl|CDD|225499 COG2948, VirB10, Type IV secretory pathway, VirB10 components
[Intracellular trafficking and secretion].
Length = 360
Score = 30.5 bits (69), Expect = 1.0
Identities = 18/78 (23%), Positives = 21/78 (26%), Gaps = 9/78 (11%)
Query: 207 FLQFSFRNESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPP 266
F + + E K P + PP P LP PP PPP P G P
Sbjct: 41 FALIALQGEKKRI--NNTQPPSNVERGTPPLPPLPDDPPL-----PPPLPVDLG--APVL 91
Query: 267 PHMGGMAPTLAMPPPPPP 284
P
Sbjct: 92 PDQQVEEAKDQPRRLRAA 109
>gnl|CDD|235899 PRK06975, PRK06975, bifunctional uroporphyrinogen-III
synthetase/uroporphyrin-III C-methyltransferase;
Reviewed.
Length = 656
Score = 30.5 bits (69), Expect = 1.1
Identities = 11/52 (21%), Positives = 16/52 (30%)
Query: 223 PPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAP 274
+P+P+ + + P P PPP PP G A
Sbjct: 274 TAAPAPSRMTDTNDSKSVTSQPAAAAAAPAPPPNPPATPPEPPARRGRGSAA 325
Score = 28.9 bits (65), Expect = 3.2
Identities = 11/52 (21%), Positives = 14/52 (26%), Gaps = 9/52 (17%)
Query: 235 PPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPPPPPPN 286
P P + + + P P PP A PP PP
Sbjct: 277 PAPSRMTDTNDSKSVTSQPAAAA----AAPAPPP-----NPPATPPEPPARR 319
Score = 28.9 bits (65), Expect = 3.3
Identities = 11/42 (26%), Positives = 15/42 (35%)
Query: 216 SKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPG 257
PS + S ++ + P PPP PP PP
Sbjct: 277 PAPSRMTDTNDSKSVTSQPAAAAAAPAPPPNPPATPPEPPAR 318
>gnl|CDD|220441 pfam09849, DUF2076, Uncharacterized protein conserved in bacteria
(DUF2076). This domain, found in various hypothetical
prokaryotic proteins, has no known function. The domain,
however, is found in various periplasmic ligand-binding
sensor proteins.
Length = 234
Score = 30.0 bits (68), Expect = 1.1
Identities = 15/71 (21%), Positives = 18/71 (25%), Gaps = 7/71 (9%)
Query: 207 FLQFSFRNESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPP 266
FL F + P+ P P P P PG
Sbjct: 82 FLSGMFGGGAPRPPPAAPAVQPPAPPARPGWGSGGPSQQGAGQQPGYAQPGPGS------ 135
Query: 267 PHMGGMAPTLA 277
+GG A T A
Sbjct: 136 -FLGGAAQTAA 145
Score = 27.7 bits (62), Expect = 6.5
Identities = 12/45 (26%), Positives = 12/45 (26%), Gaps = 5/45 (11%)
Query: 241 PPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPPPPPP 285
P PPP PP PP P G P P
Sbjct: 92 PRPPPAAPAVQPPAPPA-----RPGWGSGGPSQQGAGQQPGYAQP 131
>gnl|CDD|217310 pfam02993, MCPVI, Minor capsid protein VI. This minor capsid
protein may act as a link between the external capsid
and the internal DNA-protein core. The C-terminal 11
residues may function as a protease cofactor leading to
enzyme activation.
Length = 238
Score = 30.2 bits (68), Expect = 1.1
Identities = 14/64 (21%), Positives = 15/64 (23%), Gaps = 4/64 (6%)
Query: 222 PPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPP 281
P P P +P P P P P P P PP
Sbjct: 131 PRPRPDVE-EVLVPAAPEPPSYEETI---KPGPAPVEEPVDSMAIAVPAIDTPVTLELPP 186
Query: 282 PPPP 285
P P
Sbjct: 187 APQP 190
>gnl|CDD|216325 pfam01140, Gag_MA, Matrix protein (MA), p15. The matrix protein,
p15, is encoded by the gag gene. MA is involved in
pathogenicity.
Length = 129
Score = 29.4 bits (66), Expect = 1.1
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 7/45 (15%)
Query: 225 SPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHM 269
P P ++ + PP +L P P+ + P P PP P +
Sbjct: 91 EPPPWVKPFVDPPKVLLPSSTPKPVSPSPSA-------PPRPSSL 128
>gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional.
Length = 475
Score = 30.3 bits (68), Expect = 1.2
Identities = 12/63 (19%), Positives = 14/63 (22%), Gaps = 9/63 (14%)
Query: 223 PPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPPP 282
P+P+P P PP PP P P
Sbjct: 16 QPAPAPPSPAAAPAPP---PPAKTAAPATKAAAP------AAAAPRAEKPKKDKPRRERK 66
Query: 283 PPP 285
P P
Sbjct: 67 PKP 69
Score = 29.9 bits (67), Expect = 1.5
Identities = 9/43 (20%), Positives = 13/43 (30%)
Query: 213 RNESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPP 255
+ E++ PPSP+ A P P P
Sbjct: 11 KGEAEQPAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRA 53
Score = 29.1 bits (65), Expect = 3.1
Identities = 10/37 (27%), Positives = 13/37 (35%)
Query: 221 RPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPG 257
+P P+P PPPP P + P P
Sbjct: 16 QPAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPR 52
>gnl|CDD|221818 pfam12868, DUF3824, Domain of unknwon function (DUF3824). This is
a repeating domain found in fungal proteins. It is
proline-rich, and the function is not known.
Length = 135
Score = 29.1 bits (65), Expect = 1.2
Identities = 21/62 (33%), Positives = 23/62 (37%)
Query: 223 PPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPPP 282
PPSP + P PPPP + PP P PG PPPP PP P
Sbjct: 60 PPSPPVSDPRYYPNSNYFPPPPGSTPVPPPGPQPGYNPADYPPPPGAVPPPQNYPYPPGP 119
Query: 283 PP 284
Sbjct: 120 GQ 121
Score = 26.8 bits (59), Expect = 7.6
Identities = 15/43 (34%), Positives = 16/43 (37%)
Query: 221 RPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMP 263
PPP P P PPP PPP PP P + P
Sbjct: 86 VPPPGPQPGYNPADYPPPPGAVPPPQNYPYPPGPGQDPYAPRP 128
>gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component,
dihydrolipoamide succinyltransferase. This model
represents an Actinobacterial clade of E2 enzyme, a
component of the 2-oxoglutarate dehydrogenase complex
involved in the TCA cycle. These proteins have multiple
domains including the catalytic domain (pfam00198), one
or two biotin domains (pfam00364) and an E3-component
binding domain (pfam02817).
Length = 579
Score = 30.4 bits (68), Expect = 1.3
Identities = 9/46 (19%), Positives = 10/46 (21%), Gaps = 6/46 (13%)
Query: 222 PPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPP 267
P + P P P PP P P P
Sbjct: 209 EPAEEEAPAPSEAGSEPAPDPAARAPHAAPDPPAP------APAPA 248
Score = 29.6 bits (66), Expect = 2.2
Identities = 10/42 (23%), Positives = 12/42 (28%)
Query: 215 ESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPP 256
+ P+P PA R P P P P P
Sbjct: 216 PAPSEAGSEPAPDPAARAPHAAPDPPAPAPAPAKTAAPAAAA 257
Score = 28.1 bits (62), Expect = 5.9
Identities = 8/41 (19%), Positives = 11/41 (26%)
Query: 213 RNESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPP 253
+E+ P P+ PP P P P
Sbjct: 218 PSEAGSEPAPDPAARAPHAAPDPPAPAPAPAKTAAPAAAAP 258
>gnl|CDD|233154 TIGR00859, ENaC, sodium channel transporter. The Epithelial Na+
Channel (ENaC) Family (TC 1.A.06)The ENaC family
consists of sodium channels from animals and has no
recognizable homologues in other eukaryotes or bacteria.
The vertebrate ENaC proteins from epithelial cells
cluster tightly together on the phylogenetic tree:
voltage-insensitive ENaC homologues are also found in
the brain. Eleven sequenced C. elegans proteins,
including the degenerins, are distantly related to the
vertebrate proteins as well as to each other. At least
some ofthese proteins form part of a mechano-transducing
complex for touch sensitivity. Other members of the ENaC
family, the acid-sensing ion channels, ASIC1-3,are homo-
or hetero-oligomeric neuronal H+-gated channels that
mediate pain sensation in response to tissue acidosis.
The homologous Helix aspersa(FMRF-amide)-activated Na+
channel is the first peptide neurotransmitter-gated
ionotropic receptor to be sequenced.Mammalian ENaC is
important for the maintenance of Na+ balance and the
regulation of blood pressure. Three homologous ENaC
subunits, a, b and g, havebeen shown to assemble to form
the highly Na+-selective channel.This model is designed
from the vertebrate members of the ENaC family
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 595
Score = 30.1 bits (68), Expect = 1.4
Identities = 16/65 (24%), Positives = 20/65 (30%), Gaps = 6/65 (9%)
Query: 208 LQFSFRNESKPSFRP----PPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMP 263
L + FR + P PP P A PP P + P L P
Sbjct: 531 LLWRFRKWWQRRRGPPYAEPPEPVSADTPPSLQLDD-PPTFPSALPLPHASGLSL-PGTP 588
Query: 264 PPPPH 268
PP +
Sbjct: 589 PPNYN 593
Score = 28.5 bits (64), Expect = 4.6
Identities = 16/52 (30%), Positives = 20/52 (38%), Gaps = 5/52 (9%)
Query: 235 PPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGM--APTLAMPPPPPP 284
P PP P PP L + PP P + A L++P PPP
Sbjct: 542 RRGPPYAEPPEPV---SADTPPSLQLDDPPTFPSALPLPHASGLSLPGTPPP 590
>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit.
Transcription initiation factor IIA (TFIIA) is a
heterotrimer, the three subunits being known as alpha,
beta, and gamma, in order of molecular weight. The N and
C-terminal domains of the gamma subunit are represented
in pfam02268 and pfam02751, respectively. This family
represents the precursor that yields both the alpha and
beta subunits. The TFIIA heterotrimer is an essential
general transcription initiation factor for the
expression of genes transcribed by RNA polymerase II.
Together with TFIID, TFIIA binds to the promoter region;
this is the first step in the formation of a
pre-initiation complex (PIC). Binding of the rest of the
transcription machinery follows this step. After
initiation, the PIC does not completely dissociate from
the promoter. Some components, including TFIIA, remain
attached and re-initiate a subsequent round of
transcription.
Length = 332
Score = 30.1 bits (68), Expect = 1.5
Identities = 14/68 (20%), Positives = 16/68 (23%), Gaps = 6/68 (8%)
Query: 219 SFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAM 278
+ P P P + LP P PPP P P P
Sbjct: 48 PWDPSPQAPPPV-AQLPQPLPQPPPTQALQALPAGDQQQHNTPTGSPA-----ANPPATF 101
Query: 279 PPPPPPPN 286
P P
Sbjct: 102 ALPAGPAG 109
Score = 28.2 bits (63), Expect = 5.3
Identities = 12/82 (14%), Positives = 18/82 (21%), Gaps = 4/82 (4%)
Query: 209 QFSFRNESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMM----GPPPPPPGLFGNMPP 264
+F + + P P + P Q G P P +P
Sbjct: 46 EFPWDPSPQAPPPVAQLPQPLPQPPPTQALQALPAGDQQQHNTPTGSPAANPPATFALPA 105
Query: 265 PPPHMGGMAPTLAMPPPPPPPN 286
P + P P
Sbjct: 106 GPAGPTIQTEPGQLYPVQVPVM 127
>gnl|CDD|237802 PRK14723, flhF, flagellar biosynthesis regulator FlhF; Provisional.
Length = 767
Score = 30.2 bits (68), Expect = 1.5
Identities = 11/44 (25%), Positives = 14/44 (31%), Gaps = 5/44 (11%)
Query: 242 PPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPPPPPP 285
Q PP P P +P A ++A P P P
Sbjct: 51 VAASAQAYAPPAPAP-----LPAALVAPAPAAASIAAPAAVPAP 89
Score = 27.8 bits (62), Expect = 7.6
Identities = 9/45 (20%), Positives = 11/45 (24%), Gaps = 4/45 (8%)
Query: 222 PPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPP----PPGLFGNM 262
S P P P P P PG G++
Sbjct: 51 VAASAQAYAPPAPAPLPAALVAPAPAAASIAAPAAVPAPGAIGDL 95
>gnl|CDD|237541 PRK13881, PRK13881, conjugal transfer protein TrbI; Provisional.
Length = 472
Score = 29.7 bits (67), Expect = 1.6
Identities = 12/53 (22%), Positives = 13/53 (24%)
Query: 214 NESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPP 266
+ P SP P P P PP PP GN
Sbjct: 79 GDQTGGLIEPASPLKVPEMPTGPASAPLPIARPDNPDAPPTPPANPGNPGQVN 131
>gnl|CDD|191511 pfam06409, NPIP, Nuclear pore complex interacting protein (NPIP).
This family consists of a series of primate specific
nuclear pore complex interacting protein (NPIP)
sequences. The function of this family is unknown but is
well conserved from African apes to humans.
Length = 350
Score = 29.8 bits (66), Expect = 1.6
Identities = 22/74 (29%), Positives = 29/74 (39%), Gaps = 9/74 (12%)
Query: 222 PPPSPSPAIRNN-----LPPPPMLPPPPPPQMMGP----PPPPPGLFGNMPPPPPHMGGM 272
PPP+ +I +N PP +L P PP + P L +PP
Sbjct: 248 PPPTQQHSIIDNSLSLKTPPECLLTPLPPSALPSADDNLKTPAECLLRPLPPSADDNIKE 307
Query: 273 APTLAMPPPPPPPN 286
P PPPP PP+
Sbjct: 308 CPLALKPPPPLPPS 321
>gnl|CDD|219897 pfam08549, SWI-SNF_Ssr4, Fungal domain of unknown function
(DUF1750). This is a fungal domain of unknown function.
Length = 669
Score = 30.0 bits (67), Expect = 1.6
Identities = 17/56 (30%), Positives = 19/56 (33%), Gaps = 2/56 (3%)
Query: 231 RNNLPPPPMLPPPPPPQMMGPP-PPPPGLFGNMP-PPPPHMGGMAPTLAMPPPPPP 284
RNN P P+ P M PP P P + G P P P P P
Sbjct: 196 RNNWPTIPLPPQMAGQSMYQPPGPYPNAMVGRQPFYPQPGAVAGPPKRRGGHKAPR 251
>gnl|CDD|222579 pfam14179, YppG, YppG-like protein. The YppG-like protein family
includes the B. subtilis YppG protein, which is
functionally uncharacterized. This family of proteins is
found in bacteria. Proteins in this family are typically
between 115 and 181 amino acids in length. There are two
completely conserved residues (F and G) that may be
functionally important.
Length = 110
Score = 28.5 bits (64), Expect = 1.7
Identities = 13/63 (20%), Positives = 16/63 (25%)
Query: 223 PPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPPP 282
+ + N P P QM PP PP PP + PP
Sbjct: 4 QQNTNQYPPQNQQQQPYQQQPYHQQMPPPPYSPPQQQQGHFMPPQPQPYPKQSPQQQQPP 63
Query: 283 PPP 285
Sbjct: 64 QFS 66
Score = 28.1 bits (63), Expect = 1.9
Identities = 9/52 (17%), Positives = 10/52 (19%), Gaps = 1/52 (1%)
Query: 235 PPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPPPPPPN 286
P Q P P PP P P P +
Sbjct: 6 NTNQYPPQNQQQQPYQQQPYHQQ-MPPPPYSPPQQQQGHFMPPQPQPYPKQS 56
Score = 26.6 bits (59), Expect = 6.6
Identities = 12/48 (25%), Positives = 15/48 (31%)
Query: 220 FRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPP 267
+ P +PPPP PP PP P P + P
Sbjct: 15 QQQQPYQQQPYHQQMPPPPYSPPQQQQGHFMPPQPQPYPKQSPQQQQP 62
>gnl|CDD|215397 PLN02744, PLN02744, dihydrolipoyllysine-residue acetyltransferase
component of pyruvate dehydrogenase complex.
Length = 539
Score = 29.8 bits (67), Expect = 1.7
Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 4/52 (7%)
Query: 220 FRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGG 271
++P S +PA P PPPP + + P P + P PP G
Sbjct: 200 YKPSSSAAPAA----PKAKPSPPPPKEEEVEKPASSPEPKASKPSAPPSSGD 247
>gnl|CDD|152474 pfam12039, DUF3525, Protein of unknown function (DUF3525). This
family of proteins is functionally uncharacterized. This
protein is found in viruses. Proteins in this family are
about 360 amino acids in length.
Length = 404
Score = 29.7 bits (66), Expect = 1.7
Identities = 12/53 (22%), Positives = 15/53 (28%)
Query: 234 LPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPPPPPPN 286
+ PP P++ PPPP M P P A N
Sbjct: 169 VSPPIEDEISRQPKVNIPPPPNDEEVAMMTPLPAETMEKVFHDAGRSELIGDN 221
>gnl|CDD|227665 COG5373, COG5373, Predicted membrane protein [Function unknown].
Length = 931
Score = 29.8 bits (67), Expect = 1.8
Identities = 14/62 (22%), Positives = 17/62 (27%), Gaps = 3/62 (4%)
Query: 222 PPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPP 281
P + S A PP P P P P P + P+LA P
Sbjct: 66 PAAAESIASPEVPPPVPPAPAQEGEAPAAEQPSAVPAPSAAPAP---AEPVEPSLAANPF 122
Query: 282 PP 283
Sbjct: 123 AA 124
>gnl|CDD|114912 pfam06220, zf-U1, U1 zinc finger. This family consists of
several U1 small nuclear ribonucleoprotein C (U1-C)
proteins. The U1 small nuclear ribonucleoprotein (U1
snRNP) binds to the pre-mRNA 5' splice site (ss) at
early stages of spliceosome assembly. Recruitment of U1
to a class of weak 5' ss is promoted by binding of the
protein TIA-1 to uridine-rich sequences immediately
downstream from the 5' ss. Binding of TIA-1 in the
vicinity of a 5' ss helps to stabilise U1 snRNP
recruitment, at least in part, via a direct interaction
with U1-C, thus providing one molecular mechanism for
the function of this splicing regulator. This domain is
probably a zinc-binding. It is found in multiple copies
in some members of the family.
Length = 38
Score = 26.6 bits (59), Expect = 1.9
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 53 SYECKLCLT--LHNNEGSYLAHTQGKKHQANLARR 85
Y C C H++ +H G+KH+ N+
Sbjct: 3 KYYCDYCDCYLTHDSPSVRKSHNGGRKHKDNVKDY 37
>gnl|CDD|171499 PRK12438, PRK12438, hypothetical protein; Provisional.
Length = 991
Score = 29.8 bits (67), Expect = 1.9
Identities = 16/44 (36%), Positives = 17/44 (38%), Gaps = 6/44 (13%)
Query: 235 PPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAM 278
PPP PP PP PPP PP P G P A+
Sbjct: 913 APPPGAGPPAPP----QAVPPPR--TTQPPAAPPRGPDVPPAAV 950
Score = 29.8 bits (67), Expect = 2.0
Identities = 14/39 (35%), Positives = 16/39 (41%), Gaps = 8/39 (20%)
Query: 218 PSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPP 256
+ PPP P P PP PPP+ PP PP
Sbjct: 910 AASAPPPGAGP------PAPP--QAVPPPRTTQPPAAPP 940
Score = 28.7 bits (64), Expect = 5.1
Identities = 14/51 (27%), Positives = 15/51 (29%), Gaps = 11/51 (21%)
Query: 236 PPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPPPPPPN 286
P PP GPP PP PP P PP P+
Sbjct: 905 APGGDAASAPPPGAGPPAPPQ-------AVPPPRTTQPPA----APPRGPD 944
>gnl|CDD|220260 pfam09483, HpaP, Type III secretion protein (HpaP). This entry
represents proteins encoded by genes which are always
found in type III secretion operons, although their
function in the processes of secretion and virulence is
unclear. Hpa stands for Hrp-associated gene, where Hrp
stands for hypersensitivity response and virulence. see
also PMID:18584024.
Length = 185
Score = 29.0 bits (65), Expect = 2.0
Identities = 11/32 (34%), Positives = 12/32 (37%)
Query: 236 PPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPP 267
PP PP P + P P PP PP
Sbjct: 28 PPGTPAPPGPAEDAHPEFPERPRDAPAPPAPP 59
Score = 28.6 bits (64), Expect = 2.9
Identities = 14/46 (30%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
Query: 222 PPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPP 267
PP +P+P P P P PP PP G+ P P
Sbjct: 28 PPGTPAPP-GPAEDAHPEFPERPRDAPA-PPAPPRATDGDRDPQPL 71
>gnl|CDD|184927 PRK14963, PRK14963, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 504
Score = 29.4 bits (66), Expect = 2.2
Identities = 14/66 (21%), Positives = 17/66 (25%), Gaps = 2/66 (3%)
Query: 222 PPPSPSPAIR--NNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMP 279
P P+P+ + N L P P F P PP A P
Sbjct: 356 PAPAPADLTQRLNRLEKEVRSLRSAPTAAATAAGAPLPDFDPRPRGPPAPEPARSAEAPP 415
Query: 280 PPPPPP 285
P
Sbjct: 416 LVAPAA 421
>gnl|CDD|197891 smart00818, Amelogenin, Amelogenins, cell adhesion proteins, play a
role in the biomineralisation of teeth. They seem to
regulate formation of crystallites during the secretory
stage of tooth enamel development and are thought to
play a major role in the structural organisation and
mineralisation of developing enamel. The extracellular
matrix of the developing enamel comprises two major
classes of protein: the hydrophobic amelogenins and the
acidic enamelins. Circular dichroism studies of porcine
amelogenin have shown that the protein consists of 3
discrete folding units: the N-terminal region appears to
contain beta-strand structures, while the C-terminal
region displays characteristics of a random coil
conformation. Subsequent studies on the bovine protein
have indicated the amelogenin structure to contain a
repetitive beta-turn segment and a "beta-spiral" between
Gln112 and Leu138, which sequester a (Pro, Leu, Gln)
rich region. The beta-spiral offers a probable site for
interactions with Ca2+ ions. Muatations in the human
amelogenin gene (AMGX) cause X-linked hypoplastic
amelogenesis imperfecta, a disease characterised by
defective enamel. A 9bp deletion in exon 2 of AMGX
results in the loss of codons for Ile5, Leu6, Phe7 and
Ala8, and replacement by a new threonine codon,
disrupting the 16-residue (Met1-Ala16) amelogenin signal
peptide.
Length = 165
Score = 28.6 bits (64), Expect = 2.2
Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Query: 218 PSFRPPPSPSPAIRNNLPPPPMLPPPP--PPQMMGPPPPPPGLFGNMPPPP 266
P P ++ P PM P PP P + P PP P +F P PP
Sbjct: 93 PQPAQQPFQPQPLQPPQPQQPMQPQPPVHPIPPLPPQPPLPPMFPMQPLPP 143
Score = 27.4 bits (61), Expect = 5.4
Identities = 19/66 (28%), Positives = 24/66 (36%)
Query: 218 PSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLA 277
P+ P+ + P P+ PP P M PP P PP P M M P
Sbjct: 84 PTQHHQPNLPQPAQQPFQPQPLQPPQPQQPMQPQPPVHPIPPLPPQPPLPPMFPMQPLPP 143
Query: 278 MPPPPP 283
+ P P
Sbjct: 144 LLPDLP 149
>gnl|CDD|177328 PHA01929, PHA01929, putative scaffolding protein.
Length = 306
Score = 29.3 bits (65), Expect = 2.3
Identities = 18/67 (26%), Positives = 22/67 (32%)
Query: 218 PSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLA 277
P+ P P P+P I+ P P P P + P P M P P A
Sbjct: 21 PAAAPTPQPNPVIQPQAPVQPGQPGAPQQLAIPTQQPQPVPTSAMTPHVVQQAPAQPAPA 80
Query: 278 MPPPPPP 284
PP
Sbjct: 81 APPAAGA 87
>gnl|CDD|221641 pfam12569, NARP1, NMDA receptor-regulated protein 1. This domain
family is found in eukaryotes, and is approximately 40
amino acids in length. The family is found in
association with pfam07719, pfam00515. There is a single
completely conserved residue L that may be functionally
important. NARP1 is the mammalian homologue of a yeast
N-terminal acetyltransferase that regulates entry into
the G(0) phase of the cell cycle.
Length = 516
Score = 29.5 bits (67), Expect = 2.3
Identities = 27/110 (24%), Positives = 43/110 (39%), Gaps = 15/110 (13%)
Query: 40 LNKDPYFMKNHLGSYECKLCL---------TLHNNEGSYLAHTQGKKHQANLARRAAKEA 90
L P++ K LG+ E L L E L+ + KK R+A K+A
Sbjct: 367 LRSHPFYFKAALGAIEIYLKLHDKPLLAEGEEEEGENGNLSPAERKKL-RKKQRKAEKKA 425
Query: 91 KDAPQQPAPEKPRVEPKKFVKIGRPGYRVTKQRDPS-NGQQSLLFQVDYP 139
+ + A K + E K + TK+ DP G++ L + + P
Sbjct: 426 EKEEAEKAAAKKKAEAAA--KKAKGPDGETKKVDPDPLGEK--LARTEDP 471
>gnl|CDD|237011 PRK11892, PRK11892, pyruvate dehydrogenase subunit beta;
Provisional.
Length = 464
Score = 29.5 bits (67), Expect = 2.3
Identities = 7/44 (15%), Positives = 9/44 (20%)
Query: 242 PPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPPPPPP 285
P + P P AP + P P
Sbjct: 91 PAAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAPAAEVAADPDIP 134
>gnl|CDD|216368 pfam01213, CAP_N, Adenylate cyclase associated (CAP) N terminal.
Length = 313
Score = 29.4 bits (66), Expect = 2.3
Identities = 13/40 (32%), Positives = 13/40 (32%), Gaps = 2/40 (5%)
Query: 238 PMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLA 277
P PPPPPP PP P GG A
Sbjct: 230 PSAPPPPPP--PPPPSVPTISNSVESASSDSKGGRGAVFA 267
>gnl|CDD|219358 pfam07271, Cytadhesin_P30, Cytadhesin P30/P32. This family
consists of several Mycoplasma species specific
Cytadhesin P32 and P30 proteins. P30 has been found to
be membrane associated and localised on the tip
organelle. It is thought that it is important in
cytadherence and virulence.
Length = 279
Score = 29.3 bits (65), Expect = 2.3
Identities = 18/64 (28%), Positives = 23/64 (35%), Gaps = 1/64 (1%)
Query: 223 PPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPPP 282
+P P ++ P P P + P P G+ PPHM GM P P
Sbjct: 150 ANNPQPQVQPQFGPNPQ-QRINPQRFGFPMQPNMGMRPGFNQMPPHMPGMPPNQMRPGFN 208
Query: 283 PPPN 286
P P
Sbjct: 209 PMPG 212
>gnl|CDD|177464 PHA02682, PHA02682, ORF080 virion core protein; Provisional.
Length = 280
Score = 29.1 bits (64), Expect = 2.4
Identities = 26/78 (33%), Positives = 30/78 (38%), Gaps = 9/78 (11%)
Query: 217 KPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPP----PPGLFGNMPPPPPHMGGM 272
+PS + P +PSPA P P P P + P P PP PPP
Sbjct: 75 RPSGQSPLAPSPACAAPAPACPACAPAAPAPAVTCPAPAPACPPATAPTCPPPAVCPAPA 134
Query: 273 APTLAMPP-----PPPPP 285
P A PP PP PP
Sbjct: 135 RPAPACPPSTRQCPPAPP 152
Score = 28.7 bits (63), Expect = 3.1
Identities = 23/68 (33%), Positives = 27/68 (39%), Gaps = 5/68 (7%)
Query: 222 PPPSPSPAIRNNLP--PPPMLPPPPPPQMMGPPPPP---PGLFGNMPPPPPHMGGMAPTL 276
PPP+ PA P PP PP P + P P P P N PPP + PT+
Sbjct: 125 PPPAVCPAPARPAPACPPSTRQCPPAPPLPTPKPAPAAKPIFLHNQLPPPDYPAASCPTI 184
Query: 277 AMPPPPPP 284
P P
Sbjct: 185 ETAPAASP 192
>gnl|CDD|177614 PHA03377, PHA03377, EBNA-3C; Provisional.
Length = 1000
Score = 29.6 bits (66), Expect = 2.4
Identities = 20/63 (31%), Positives = 23/63 (36%), Gaps = 3/63 (4%)
Query: 222 PPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPP 281
P SPS PP M PP P++M P P +M PP A PP
Sbjct: 553 PKVSPSDRGPPKASPPVMAPPSTGPRVMATPSTGP---RDMAPPSTGPRQQAKCKDGPPA 609
Query: 282 PPP 284
P
Sbjct: 610 SGP 612
Score = 28.1 bits (62), Expect = 7.3
Identities = 21/73 (28%), Positives = 24/73 (32%), Gaps = 4/73 (5%)
Query: 217 KPSFRPPPSPSP--AIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGG--M 272
PS R PP SP + P M P P+ M PP P PP G
Sbjct: 556 SPSDRGPPKASPPVMAPPSTGPRVMATPSTGPRDMAPPSTGPRQQAKCKDGPPASGPHEK 615
Query: 273 APTLAMPPPPPPP 285
P + P P
Sbjct: 616 QPPSSAPRDMAPS 628
>gnl|CDD|237182 PRK12727, PRK12727, flagellar biosynthesis regulator FlhF;
Provisional.
Length = 559
Score = 29.6 bits (66), Expect = 2.4
Identities = 12/76 (15%), Positives = 19/76 (25%), Gaps = 13/76 (17%)
Query: 223 PPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPP------------PPHMG 270
P + L P+ P ++ P P P + +
Sbjct: 160 SAVPEQLFADFLTTAPVPRAPVQAPVVAAPAPVPAIAAALAAHAAYAQDDDEQLDDDGFD 219
Query: 271 -GMAPTLAMPPPPPPP 285
A +PP PP
Sbjct: 220 LDDALPQILPPAALPP 235
Score = 27.6 bits (61), Expect = 8.8
Identities = 12/80 (15%), Positives = 20/80 (25%), Gaps = 13/80 (16%)
Query: 220 FRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPP-------------PPGLFGNMPPPP 266
F + +P R + P + P P P + G + P
Sbjct: 167 FADFLTTAPVPRAPVQAPVVAAPAPVPAIAAALAAHAAYAQDDDEQLDDDGFDLDDALPQ 226
Query: 267 PHMGGMAPTLAMPPPPPPPN 286
P + + P P
Sbjct: 227 ILPPAALPPIVVAPAAPAAL 246
>gnl|CDD|233508 TIGR01649, hnRNP-L_PTB, hnRNP-L/PTB/hephaestus splicing factor
family. Included in this family of heterogeneous
ribonucleoproteins are PTB (polypyrimidine tract binding
protein ) and hnRNP-L. These proteins contain four RNA
recognition motifs (rrm: pfam00067).
Length = 481
Score = 29.4 bits (66), Expect = 2.7
Identities = 13/58 (22%), Positives = 16/58 (27%), Gaps = 5/58 (8%)
Query: 219 SFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTL 276
S P A + + PP P P P P + P GG L
Sbjct: 226 SSHGGPLAPLAGGDRMGPPHGPPSRYRPAYEAAPLAPA-----ISSYGPAGGGPGSVL 278
Score = 28.2 bits (63), Expect = 6.1
Identities = 14/67 (20%), Positives = 14/67 (20%), Gaps = 2/67 (2%)
Query: 221 RPPPSPSPAIRNNLPPPPMLPPP--PPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAM 278
R P R P P P L G PPH A
Sbjct: 196 RRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSRYRPAY 255
Query: 279 PPPPPPP 285
P P
Sbjct: 256 EAAPLAP 262
>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional.
Length = 333
Score = 29.2 bits (66), Expect = 2.7
Identities = 19/70 (27%), Positives = 22/70 (31%), Gaps = 5/70 (7%)
Query: 222 PPPSPSPAIRNNLP--PPPMLPPPPPPQMMGPPP---PPPGLFGNMPPPPPHMGGMAPTL 276
P +P PA P P P P P P P P + P P A +
Sbjct: 115 PQHAPRPAQPAPQPVQQPAYQPQPEQPLQQPVSPQVAPAPQPVHSAPQPAQQAFQPAEPV 174
Query: 277 AMPPPPPPPN 286
A P P P
Sbjct: 175 AAPQPEPVAE 184
>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family. Atrophin-1 is the
protein product of the dentatorubral-pallidoluysian
atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive
neurodegenerative disorder. It is caused by the
expansion of a CAG repeat in the DRPLA gene on
chromosome 12p. This results in an extended
polyglutamine region in atrophin-1, that is thought to
confer toxicity to the protein, possibly through
altering its interactions with other proteins. The
expansion of a CAG repeat is also the underlying defect
in six other neurodegenerative disorders, including
Huntington's disease. One interaction of expanded
polyglutamine repeats that is thought to be pathogenic
is that with the short glutamine repeat in the
transcriptional coactivator CREB binding protein, CBP.
This interaction draws CBP away from its usual nuclear
location to the expanded polyglutamine repeat protein
aggregates that are characteristic of the polyglutamine
neurodegenerative disorders. This interferes with
CBP-mediated transcription and causes cytotoxicity.
Length = 979
Score = 29.3 bits (65), Expect = 2.8
Identities = 22/79 (27%), Positives = 30/79 (37%), Gaps = 6/79 (7%)
Query: 209 QFSFRNESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMP----- 263
Q ++ P PSP P + +NLPPPP L P PP P MP
Sbjct: 356 QLPNQSHKHPPHLQGPSPFPQMPSNLPPPPALKPLSSLPTHHPPSAHPPPLQLMPQSQPL 415
Query: 264 -PPPPHMGGMAPTLAMPPP 281
P + + ++PP
Sbjct: 416 QSVPAQPPVLTQSQSLPPK 434
Score = 28.9 bits (64), Expect = 4.0
Identities = 26/73 (35%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Query: 215 ESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPP--PPPGLFGNMPPPPPHMGGM 272
+++P PPS S P LPP P + PPP P P L PPH+ G
Sbjct: 312 QAQPHSHTPPSQSALQPQQPPREQPLPPAPSMPHIKPPPTTPIPQLPNQSHKHPPHLQGP 371
Query: 273 APTLAMPPPPPPP 285
+P MP PPP
Sbjct: 372 SPFPQMPSNLPPP 384
Score = 27.7 bits (61), Expect = 8.2
Identities = 19/68 (27%), Positives = 21/68 (30%)
Query: 216 SKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPT 275
S PP SP P + PPP P PP G+ PP
Sbjct: 441 SGLHSGPPQSPFAQHPFTSGGLPAIGPPPSLPTSTPAAPPRASSGSQPPGSALPSSGGCA 500
Query: 276 LAMPPPPP 283
PP PP
Sbjct: 501 GPGPPLPP 508
>gnl|CDD|151322 pfam10873, DUF2668, Protein of unknown function (DUF2668). Members
in this family of proteins are annotated as Cysteine and
tyrosine-rich protein 1, however currently no function
is known.
Length = 154
Score = 28.3 bits (63), Expect = 2.9
Identities = 11/22 (50%), Positives = 11/22 (50%)
Query: 236 PPPMLPPPPPPQMMGPPPPPPG 257
PPP P P PPPP PG
Sbjct: 129 PPPYSPAPQASAQRSPPPPYPG 150
>gnl|CDD|220950 pfam11029, DAZAP2, DAZ associated protein 2 (DAZAP2). DAZ
associated protein 2 has a highly conserved sequence
throughout evolution including a conserved polyproline
region and several SH2/SH3 binding sites. It occurs as a
single copy gene with a four-exon organisation and is
located on chromosome 12. It encodes a ubiquitously
expressed protein and binds to DAZ and DAZL1 through DAZ
repeats.
Length = 136
Score = 27.9 bits (62), Expect = 3.2
Identities = 17/69 (24%), Positives = 23/69 (33%), Gaps = 8/69 (11%)
Query: 224 PSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAM----- 278
P PA P ++PP P P P ++ M +G + M
Sbjct: 2 PDAPPAYSELYQPSYVVPPQAQMPQASAPYPGPSMYLPMAQVMA-VGPQSSHPPMAYYPI 60
Query: 279 --PPPPPPP 285
PPP PP
Sbjct: 61 GAPPPVYPP 69
>gnl|CDD|185156 PRK15244, PRK15244, virulence protein SpvB; Provisional.
Length = 591
Score = 28.9 bits (64), Expect = 3.3
Identities = 11/16 (68%), Positives = 12/16 (75%)
Query: 235 PPPPMLPPPPPPQMMG 250
P M+PPPPPP MMG
Sbjct: 361 PVNNMMPPPPPPPMMG 376
Score = 28.9 bits (64), Expect = 3.7
Identities = 12/22 (54%), Positives = 13/22 (59%)
Query: 244 PPPQMMGPPPPPPGLFGNMPPP 265
P MM PPPPPP + GN P
Sbjct: 361 PVNNMMPPPPPPPMMGGNSSRP 382
>gnl|CDD|234012 TIGR02784, addA_alphas, double-strand break repair helicase AddA,
alphaproteobacterial type. AddAB, also called RexAB,
substitutes for RecBCD in several bacterial lineages.
These DNA recombination proteins act before synapse and
are particularly important for DNA repair of
double-stranded breaks by homologous recombination. The
term AddAB is used broadly, with AddA homologous between
the alphaproteobacteria (as modeled here) and the
Firmicutes, while the partner AddB proteins show no
strong homology across the two groups of species [DNA
metabolism, DNA replication, recombination, and repair].
Length = 1135
Score = 29.3 bits (66), Expect = 3.3
Identities = 7/32 (21%), Positives = 8/32 (25%)
Query: 235 PPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPP 266
P+ P Q P L P P
Sbjct: 912 DWDPVGLPVEAAQTDTLEALPDWLRAPAPAEP 943
>gnl|CDD|216066 pfam00695, vMSA, Major surface antigen from hepadnavirus.
Length = 364
Score = 28.8 bits (64), Expect = 3.5
Identities = 14/57 (24%), Positives = 19/57 (33%), Gaps = 6/57 (10%)
Query: 232 NNLPPPPMLPPPPPPQMMGPPPPPPGLF----GNMPPPPP--HMGGMAPTLAMPPPP 282
N +P P P ++ P G+ G PP +G PT PP
Sbjct: 27 NMIPVGAFGKRPTIPHILDHSPQVEGIRTTQSGIPPPAGTSNRLGLRQPTPITPPLR 83
>gnl|CDD|240108 cd04791, LanC_SerThrkinase, Lanthionine synthetase C-like domain
associated with serine threonine kinases. Some members
of this subgroup lack the zinc binding site and the
active site residues, and therefore are most likely
inactive. The function of this domain is unknown.
Length = 321
Score = 28.5 bits (64), Expect = 3.6
Identities = 9/43 (20%), Positives = 14/43 (32%), Gaps = 2/43 (4%)
Query: 7 PGGKTGGGGVAS--WSESNRDRRERLRQLALETIDLNKDPYFM 47
PG G G+A + R + L L+ N +
Sbjct: 40 PGLYDGRAGIAWVLIELGHPARAKALFDTLLDEPSANLNIDLA 82
>gnl|CDD|217469 pfam03276, Gag_spuma, Spumavirus gag protein.
Length = 582
Score = 28.7 bits (64), Expect = 3.6
Identities = 24/67 (35%), Positives = 28/67 (41%), Gaps = 10/67 (14%)
Query: 219 SFRPPPSPSPAIR-NNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLA 277
S P S +P R + P LP P P Q PP P PP PP + +A
Sbjct: 203 SLAPSASSTPGNRLPRVSFNPFLPGPSPAQPSAPPASIPA-----PPIPP----VIQYVA 253
Query: 278 MPPPPPP 284
PP PPP
Sbjct: 254 PPPVPPP 260
>gnl|CDD|236692 PRK10431, PRK10431, N-acetylmuramoyl-l-alanine amidase II;
Provisional.
Length = 445
Score = 28.7 bits (64), Expect = 4.2
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 222 PPPSPSPAIRNNLPPPPMLPPPP 244
PPP P P + + P ++ P
Sbjct: 131 PPPPPPPVVAKRVETPAVVAPRV 153
>gnl|CDD|165527 PHA03269, PHA03269, envelope glycoprotein C; Provisional.
Length = 566
Score = 28.5 bits (63), Expect = 4.2
Identities = 18/69 (26%), Positives = 23/69 (33%), Gaps = 4/69 (5%)
Query: 216 SKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPT 275
S P P+ +P + P P P P P P + P P +AP
Sbjct: 48 QAASRAPDPAVAPTSAASRKPDLAQAPTPAASEKFDPAPAPHQAASRAPDP----AVAPQ 103
Query: 276 LAMPPPPPP 284
LA P P
Sbjct: 104 LAAAPKPDA 112
>gnl|CDD|148139 pfam06346, Drf_FH1, Formin Homology Region 1. This region is found
in some of the Diaphanous related formins (Drfs). It
consists of low complexity repeats of around 12
residues.
Length = 160
Score = 28.0 bits (62), Expect = 4.4
Identities = 26/63 (41%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 222 PPPSPSPAIRNNLPPPPM-----LPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTL 276
PPP P P PPPP+ +PPPPPP P PPP PPPPP G+
Sbjct: 98 PPPPPLPGGAAVPPPPPLPGGPGVPPPPPPFPGAPGIPPPPPGMGSPPPPPFGFGVPAAP 157
Query: 277 AMP 279
+P
Sbjct: 158 VLP 160
Score = 26.8 bits (59), Expect = 10.0
Identities = 33/72 (45%), Positives = 35/72 (48%), Gaps = 8/72 (11%)
Query: 222 PPPSPSPAIRNNLPPPPML------PPPPPPQMMGPPPPPPGLFGN--MPPPPPHMGGMA 273
PPP P P PPPP+ PPPP P G PPPPP L G +PPPPP GG
Sbjct: 61 PPPPPLPGATAIPPPPPLPGAAGIPPPPPLPGGAGIPPPPPPLPGGAAVPPPPPLPGGPG 120
Query: 274 PTLAMPPPPPPP 285
PP P P
Sbjct: 121 VPPPPPPFPGAP 132
>gnl|CDD|212073 cd11504, SLC5sbd_SMVT, Na(+)/multivitamin cotransporter SMVT and
related proteins; solute-binding domain. This
multivitamin transporter SMVT (product of the SLC5A6
gene) transports biotin, pantothenic acid and lipoate,
and is essential for mediating biotin uptake into
mammalian cells. SMVT is expressed in the placenta,
intestine, heart, brain, lung, liver, kidney and
pancreas. Biotin may regulate its own cellular uptake
through participation in holocarboxylase
synthetase-dependent chromatin remodeling events at SMVT
promoter loci. The cis regulatory elements, Kruppel-like
factor 4 and activator protein-2, regulate the activity
of the human SMVT promoter in the intestine.
Glycosylation of the hSMVT is important for its
transport function. This subgroup belongs to the solute
carrier 5 (SLC5) transporter family.
Length = 527
Score = 28.7 bits (64), Expect = 4.5
Identities = 10/39 (25%), Positives = 13/39 (33%), Gaps = 2/39 (5%)
Query: 249 MGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPP--PPPP 285
M P P + + P + PT P P PP
Sbjct: 456 MYSPTKSPPINDTIFPNVTNATAATPTTLFATPTDPRPP 494
>gnl|CDD|188122 TIGR01264, tyr_amTase_E, tyrosine aminotransferase, eukaryotic.
This model describes tyrosine aminotransferase as found
in animals and Trypanosoma cruzi. It is the first enzyme
of a pathway of tyrosine degradation via homogentisate.
Several plant enzyme designated as probable tyrosine
aminotransferases are very closely related to an
experimentally demonstrated nicotianamine
aminotransferase, an enzyme in a siderophore (iron
uptake chelator) biosynthesis pathway. These plant
sequences are excluded from the model seed and score
between the trusted an noise cutoffs [Energy metabolism,
Amino acids and amines].
Length = 401
Score = 28.6 bits (64), Expect = 4.6
Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 4/47 (8%)
Query: 226 PSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGM 272
P AI +N+ P P +G P +FGN+P P M M
Sbjct: 15 PIRAIVDNMKVKPNPEKPVIKLSIGDPT----VFGNLPTDPEVMQAM 57
>gnl|CDD|235322 PRK04950, PRK04950, ProP expression regulator; Provisional.
Length = 213
Score = 28.0 bits (63), Expect = 4.6
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 76 KKHQANLARRAAKEAKDAPQQPAPEKPRVEPKK 108
+ Q R AA E + AP++ KP+ KK
Sbjct: 114 RAEQQAKKREAAGEKEKAPRRERKPKPKAPRKK 146
>gnl|CDD|218422 pfam05088, Bac_GDH, Bacterial NAD-glutamate dehydrogenase. This
family consists of several bacterial proteins which are
closely related to NAD-glutamate dehydrogenase found in
Streptomyces clavuligerus. Glutamate dehydrogenases
(GDHs) are a broadly distributed group of enzymes that
catalyze the reversible oxidative deamination of
glutamate to ketoglutarate and ammonia.
Length = 1526
Score = 28.6 bits (65), Expect = 4.8
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 6 RPGGKTGGGGVASWSESNRDRRERLRQL 33
G+ VA+W E+N R ER R++
Sbjct: 1474 SGPGEDAEAAVAAWLEANASRLERWRRM 1501
>gnl|CDD|179538 PRK03100, PRK03100, sec-independent translocase; Provisional.
Length = 136
Score = 27.3 bits (61), Expect = 4.8
Identities = 7/34 (20%), Positives = 9/34 (26%)
Query: 220 FRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPP 253
F + P + P P P PP
Sbjct: 97 FDQTGNGRPTPSSPDAAGPAPPDATPLAPGERPP 130
>gnl|CDD|178748 PLN03209, PLN03209, translocon at the inner envelope of chloroplast
subunit 62; Provisional.
Length = 576
Score = 28.4 bits (63), Expect = 4.9
Identities = 16/67 (23%), Positives = 22/67 (32%), Gaps = 2/67 (2%)
Query: 218 PSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLA 277
+PP SPSP + P P + P PPP +M ++P
Sbjct: 445 EDLKPPTSPSPTAPTGVSPSVSSTSSVP--AVPDTAPATAATDAAAPPPANMRPLSPYAV 502
Query: 278 MPPPPPP 284
PP
Sbjct: 503 YDDLKPP 509
>gnl|CDD|115307 pfam06637, PV-1, PV-1 protein (PLVAP). This family consists of
several PV-1 (PLVAP) proteins which seem to be specific
to mammals. PV-1 is a novel protein component of the
endothelial fenestral and stomatal diaphragms. The
function of this family is unknown.
Length = 442
Score = 28.5 bits (63), Expect = 5.2
Identities = 11/17 (64%), Positives = 12/17 (70%)
Query: 240 LPPPPPPQMMGPPPPPP 256
LP PP + MGPPP PP
Sbjct: 395 LPAMPPSRPMGPPPNPP 411
>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein;
Provisional.
Length = 617
Score = 28.3 bits (63), Expect = 5.3
Identities = 15/78 (19%), Positives = 16/78 (20%), Gaps = 5/78 (6%)
Query: 213 RNESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLF-----GNMPPPPP 267
R RP P P Q+ P P G P
Sbjct: 104 RTSEPELPRPGRRPYEGYGGPRADDRPPGLPRQDQLPTARPAYPAYQQRPEPGAWPRAAD 163
Query: 268 HMGGMAPTLAMPPPPPPP 285
G L PP P
Sbjct: 164 DYGWQQQRLGFPPRAPYA 181
>gnl|CDD|139164 PRK12700, flgH, flagellar basal body L-ring protein; Reviewed.
Length = 230
Score = 28.1 bits (62), Expect = 5.4
Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
Query: 262 MPPPPPHMGGMAPTLAMPPPPPPP 285
M PP P + G P A PPPPP P
Sbjct: 24 MIPPEPVVTG--PLTAPPPPPPQP 45
>gnl|CDD|218146 pfam04554, Extensin_2, Extensin-like region.
Length = 57
Score = 25.9 bits (57), Expect = 5.5
Identities = 19/50 (38%), Positives = 20/50 (40%)
Query: 235 PPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPPPPP 284
PP PPPP PPPP PPPP + P PPPP
Sbjct: 8 PPVKQYSPPPPYYYKSPPPPVKSPVYKSPPPPVYKSPPPPKYVYKSPPPP 57
>gnl|CDD|185485 PTZ00156, PTZ00156, 60S ribosomal protein L11; Provisional.
Length = 172
Score = 27.7 bits (62), Expect = 5.6
Identities = 7/15 (46%), Positives = 13/15 (86%)
Query: 109 FVKIGRPGYRVTKQR 123
+V +GRPG+RV +++
Sbjct: 127 YVVLGRPGFRVARRK 141
>gnl|CDD|235309 PRK04596, minC, septum formation inhibitor; Reviewed.
Length = 248
Score = 28.0 bits (62), Expect = 5.7
Identities = 14/33 (42%), Positives = 14/33 (42%), Gaps = 4/33 (12%)
Query: 243 PPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPT 275
PPPP PPPPP P P G M T
Sbjct: 119 PPPP----PPPPPARAEPAPPVARPAPGRMQRT 147
Score = 28.0 bits (62), Expect = 6.0
Identities = 13/28 (46%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 235 PPPPMLPPPPPPQMMGPPPPPPGLFGNM 262
PPPP PPPPP + PP G M
Sbjct: 119 PPPP--PPPPPARAEPAPPVARPAPGRM 144
Score = 27.2 bits (60), Expect = 8.9
Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 231 RNNLPPPPMLPPPPPPQMMGPPPPPP 256
R + PPP PPPPPP P PP
Sbjct: 114 RAAVSPPP--PPPPPPARAEPAPPVA 137
>gnl|CDD|204405 pfam10146, zf-C4H2, Zinc finger-containing protein. This is a
family of proteins which appears to have a highly
conserved zinc finger domain at the C terminal end,
described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is
predicted to contain a coiled coil. Members are
annotated as being tumour-associated antigen HCA127 in
humans but this could not confirmed.
Length = 215
Score = 27.9 bits (62), Expect = 6.0
Identities = 11/50 (22%), Positives = 13/50 (26%), Gaps = 10/50 (20%)
Query: 235 PPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPPPPP 284
P +PP P P PP P P + A P
Sbjct: 123 PATSPVPPVPLP----DPPAFPS------TLPANAAAAAAAQQQRDVPQN 162
>gnl|CDD|216648 pfam01690, PLRV_ORF5, Potato leaf roll virus readthrough protein.
This family consists mainly of the potato leaf roll
virus readthrough protein. This is generated via a
readthrough of open reading frame 3 a coat protein
allowing transcription of open reading frame 5 to give
an extended coat protein with a large c-terminal
addition or read through domain. The readthrough protein
is thought to play a role in the circulative aphid
transmission of potato leaf roll virus. Also in the
family is open reading frame 6 from beet western yellows
virus and potato leaf roll virus both luteovirus and an
unknown protein from cucurbit aphid-borne yellows virus
a closterovirus.
Length = 460
Score = 28.1 bits (63), Expect = 6.2
Identities = 14/39 (35%), Positives = 15/39 (38%), Gaps = 10/39 (25%)
Query: 221 RPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLF 259
P P P P P PP PP P P+ P P F
Sbjct: 4 EPGPKPGPT-----PTPP--PPAPTPE---PTPAKHERF 32
>gnl|CDD|216263 pfam01044, Vinculin, Vinculin family.
Length = 850
Score = 28.2 bits (63), Expect = 6.3
Identities = 11/45 (24%), Positives = 15/45 (33%)
Query: 223 PPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPP 267
P + + + P P P PPP + PP PP
Sbjct: 607 PIRQAVLMNRSPPELPTDSEFEREDEPADPRPPPPVETEPPPRPP 651
Score = 27.8 bits (62), Expect = 9.6
Identities = 16/54 (29%), Positives = 16/54 (29%), Gaps = 15/54 (27%)
Query: 241 PPPPPPQMMGPPPPPPGL---------FGNMPPPPPHMGGMAPTLAMPPPPPPP 285
P M PP P PPPP T P PPPPP
Sbjct: 607 PIRQAVLMNRSPPELPTDSEFEREDEPADPRPPPPVE------TEPPPRPPPPP 654
>gnl|CDD|218397 pfam05044, Prox1, Homeobox prospero-like protein (PROX1). The
homeobox gene Prox1 is expressed in a subpopulation of
endothelial cells that, after budding from veins, gives
rise to the mammalian lymphatic system. Prox1 has been
found to be an early specific marker for the developing
liver and pancreas in the mammalian foregut endoderm.
This family contains an atypical homeobox domain.
Length = 908
Score = 28.1 bits (62), Expect = 6.5
Identities = 19/62 (30%), Positives = 24/62 (38%), Gaps = 4/62 (6%)
Query: 223 PPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPP--PPGLFGNMPPPPPHMGGMAPTLAMPP 280
PS A PPP P P P + P P +F P PH+G AP+ + P
Sbjct: 620 HPSSLSASMGFHPPPFRHPFPLPLTVAIPNPSLHQSEVFMGYPFQSPHLG--APSGSPPG 677
Query: 281 PP 282
Sbjct: 678 KD 679
>gnl|CDD|233366 TIGR01348, PDHac_trf_long, pyruvate dehydrogenase complex
dihydrolipoamide acetyltransferase, long form. This
model describes a subset of pyruvate dehydrogenase
complex dihydrolipoamide acetyltransferase specifically
close by both phylogenetic and per cent identity (UPGMA)
trees. Members of this set include two or three copies
of the lipoyl-binding domain. E. coli AceF is a member
of this model, while mitochondrial and some other
bacterial forms belong to a separate model [Energy
metabolism, Pyruvate dehydrogenase].
Length = 546
Score = 27.9 bits (62), Expect = 6.6
Identities = 15/63 (23%), Positives = 17/63 (26%), Gaps = 6/63 (9%)
Query: 215 ESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAP 274
P+ P + SPA P P P Q P P P H
Sbjct: 199 APAPASAQPAAQSPA--ATQPEPAAAPAAAKAQ----APAPQQAGTQNPAKVDHAAPAVR 252
Query: 275 TLA 277
LA
Sbjct: 253 RLA 255
Score = 27.9 bits (62), Expect = 7.2
Identities = 16/56 (28%), Positives = 20/56 (35%), Gaps = 2/56 (3%)
Query: 89 EAKDAPQQPAPEKPRVEPKKFVKIGRPGYRVTKQRDPSNGQQSLLFQVDYPEIADD 144
E Q A K P G P Q P+ GQ S + +V P+I D
Sbjct: 74 EVGAGAQAQAEAKKEAAPAPTA--GAPAPAAQAQAAPAAGQSSGVQEVTVPDIGDI 127
>gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex
non-fungal. The approx. 70 residue Med15 domain of the
ARC-Mediator co-activator is a three-helix bundle with
marked similarity to the KIX domain. The sterol
regulatory element binding protein (SREBP) family of
transcription activators use the ARC105 subunit to
activate target genes in the regulation of cholesterol
and fatty acid homeostasis. In addition, Med15 is a
critical transducer of gene activation signals that
control early metazoan development.
Length = 768
Score = 28.0 bits (62), Expect = 6.9
Identities = 13/49 (26%), Positives = 15/49 (30%)
Query: 237 PPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPPPPPP 285
+P P P G+ N P G P M PPP P
Sbjct: 270 QMQVPMQQQPPQQQPQQSQLGMLPNQMQQMPGGGQGGPGQPMGPPPQRP 318
Score = 28.0 bits (62), Expect = 7.1
Identities = 23/84 (27%), Positives = 31/84 (36%), Gaps = 12/84 (14%)
Query: 204 KQFFLQFSFRNESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMP 263
Q L + + +P PSP P ++ +P PP P + P P
Sbjct: 394 NQGGLGANPMQQGQPGMMSSPSPVPQVQ----TNQSMPQPPQPSVPSPGGP------GSQ 443
Query: 264 PPPPHMGGMAPTLA--MPPPPPPP 285
PP GGM P+ MP P P
Sbjct: 444 PPQSVSGGMIPSPPALMPSPSPQM 467
>gnl|CDD|223079 PHA03419, PHA03419, E4 protein; Provisional.
Length = 200
Score = 27.2 bits (60), Expect = 7.4
Identities = 18/54 (33%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Query: 229 AIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPPP 282
A+R L PP P PPP P G+ PP LA+ PPP
Sbjct: 40 ALRRQLETGYPFCPPTTPHPSSQPPPCPPSPGH---PPQTNDTHEKDLALQPPP 90
>gnl|CDD|99960 cd03784, GT1_Gtf_like, This family includes the Gtfs, a group of
homologous glycosyltransferases involved in the final
stages of the biosynthesis of antibiotics vancomycin and
related chloroeremomycin. Gtfs transfer sugar moieties
from an activated NDP-sugar donor to the oxidatively
cross-linked heptapeptide core of vancomycin group
antibiotics. The core structure is important for the
bioactivity of the antibiotics.
Length = 401
Score = 27.7 bits (62), Expect = 7.5
Identities = 16/64 (25%), Positives = 21/64 (32%), Gaps = 8/64 (12%)
Query: 218 PSFRPPPSPSPAIRNN-----LPPPPMLPPPPPPQMMGPPPPPPGL--FGNMPPP-PPHM 269
P+ PPP P P PPPP + PP FG+M P +
Sbjct: 198 PAVLPPPPDWPRFDLVTGYGFRDVPYNGPPPPELWLFLAAGRPPVYVGFGSMVVRDPEAL 257
Query: 270 GGMA 273
+
Sbjct: 258 ARLD 261
>gnl|CDD|184923 PRK14959, PRK14959, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 624
Score = 27.7 bits (61), Expect = 7.8
Identities = 16/45 (35%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 235 PPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMP 279
P P P P P PP PP G P P P M +P P
Sbjct: 424 PAPSAAPSPRVPWDDAPPAPPRS--GIPPRPAPRMPEASPVPGAP 466
>gnl|CDD|220815 pfam10577, UPF0560, Uncharacterized protein family UPF0560. This
family of proteins has no known function.
Length = 805
Score = 27.9 bits (62), Expect = 8.0
Identities = 20/73 (27%), Positives = 25/73 (34%), Gaps = 5/73 (6%)
Query: 215 ESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPP--GLFGNMPPPPPHMGGM 272
ES S A +N+ PP + PP GP PP P + + PP M
Sbjct: 419 ESSSLENHRDSFGLANQNHYSAPPTVSIQPP---SGPVPPKPEKEVLSDSRPPDYLMSRS 475
Query: 273 APTLAMPPPPPPP 285
L P P
Sbjct: 476 VDHLERPTSLSQP 488
>gnl|CDD|236658 PRK10153, PRK10153, DNA-binding transcriptional activator CadC;
Provisional.
Length = 517
Score = 27.7 bits (62), Expect = 8.2
Identities = 11/49 (22%), Positives = 12/49 (24%), Gaps = 7/49 (14%)
Query: 215 ESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMP 263
E + PPP P P P P PP P
Sbjct: 113 EEILASSPPPIPEAV-------PATAEPSESANAQFPAPPLTRAVCQSP 154
>gnl|CDD|236507 PRK09424, pntA, NAD(P) transhydrogenase subunit alpha; Provisional.
Length = 509
Score = 27.5 bits (62), Expect = 8.4
Identities = 6/15 (40%), Positives = 7/15 (46%)
Query: 242 PPPPPQMMGPPPPPP 256
PPPP Q+ P
Sbjct: 369 PPPPIQVSAAPAAAA 383
>gnl|CDD|172376 PRK13855, PRK13855, type IV secretion system protein VirB10;
Provisional.
Length = 376
Score = 27.6 bits (61), Expect = 8.4
Identities = 13/46 (28%), Positives = 14/46 (30%), Gaps = 3/46 (6%)
Query: 223 PPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPH 268
P PS I N P P PP PP + PP
Sbjct: 59 PAPPSTMIATNTKPFHPAPIDVPPD---PPAAQEAVQPTAPPSAQS 101
>gnl|CDD|225950 COG3416, COG3416, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 233
Score = 27.2 bits (60), Expect = 8.8
Identities = 11/33 (33%), Positives = 11/33 (33%), Gaps = 2/33 (6%)
Query: 235 PPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPP 267
PP PPP P PP G P P
Sbjct: 98 APPANAPPPKEPAA--PPSWRSSPAGPTTQPSP 128
>gnl|CDD|215608 PLN03159, PLN03159, cation/H(+) antiporter 15; Provisional.
Length = 832
Score = 27.5 bits (61), Expect = 8.9
Identities = 8/36 (22%), Positives = 9/36 (25%), Gaps = 3/36 (8%)
Query: 235 PPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMG 270
P P L P P P + PP
Sbjct: 800 PQPDDLGTPESP---AHSPEQYYSYNLNNRRPPSQR 832
>gnl|CDD|237684 PRK14346, PRK14346, lipoate-protein ligase B; Provisional.
Length = 230
Score = 27.0 bits (60), Expect = 9.3
Identities = 11/32 (34%), Positives = 13/32 (40%), Gaps = 3/32 (9%)
Query: 227 SPAIRNNLPPP---PMLPPPPPPQMMGPPPPP 255
+P I L P LP P + G P PP
Sbjct: 123 APGIYVRLDDPFSHAALPQRPQKRGGGAPQPP 154
>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase;
Provisional.
Length = 418
Score = 27.3 bits (61), Expect = 9.3
Identities = 16/54 (29%), Positives = 19/54 (35%), Gaps = 10/54 (18%)
Query: 215 ESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPH 268
K + P + +P P PP P PP PP P P PPP
Sbjct: 137 AEKTTPEKPKAAAPT-----PEPPAASKPTPPAAAKPPEPAP-----AAKPPPT 180
>gnl|CDD|223029 PHA03264, PHA03264, envelope glycoprotein D; Provisional.
Length = 416
Score = 27.3 bits (60), Expect = 9.5
Identities = 20/71 (28%), Positives = 24/71 (33%), Gaps = 4/71 (5%)
Query: 215 ESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAP 274
ESK + PPP+PS + PP P P+ PG P G
Sbjct: 260 ESKG-YEPPPAPSGG---SPAPPGDDRPEAKPEPGPVEDGAPGRETGGEGEGPEPAGRDG 315
Query: 275 TLAMPPPPPPP 285
P P PP
Sbjct: 316 AAGGEPKPGPP 326
>gnl|CDD|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457). This is
a family of uncharacterized proteins.
Length = 449
Score = 27.3 bits (60), Expect = 10.0
Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Query: 213 RNESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGM 272
+ + S + SP P P ++ PPPP + PPP + P PH+G +
Sbjct: 268 KRSPRTSPKRFRSPPPRKARGRSPRRLIRSPPPPGRLRSPPPLHA--SDSPVASPHVGEL 325
Query: 273 A 273
Sbjct: 326 G 326
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.137 0.443
Gapped
Lambda K H
0.267 0.0708 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,959,454
Number of extensions: 1564378
Number of successful extensions: 9046
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5302
Number of HSP's successfully gapped: 837
Length of query: 286
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 190
Effective length of database: 6,679,618
Effective search space: 1269127420
Effective search space used: 1269127420
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.2 bits)