RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1344
(286 letters)
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 166 bits (422), Expect = 5e-51
Identities = 25/114 (21%), Positives = 43/114 (37%), Gaps = 25/114 (21%)
Query: 128 GQQSLLFQVDYPEIA----------DDVFPRHRFMSAYEQRIEPPDRKWQYLLFAAEPYE 177
G + QV+Y V P R +S E K ++L+ A EP+E
Sbjct: 114 GSVGMAIQVNYSSEVKENSVDSDDKAKVPPLIRIVSGLELSDTKQKGK-KFLVIAYEPFE 172
Query: 178 TIAFKVPSREVDKGDTKF--------------WTHWNKDTKQFFLQFSFRNESK 217
IA ++P E+ + T W+ +K +++QF F+ +
Sbjct: 173 NIAIELPPNEILFSENNDMDNNNDGVDELNKKCTFWDAISKLYYVQFFFKQAEQ 226
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein,
abnormal nuclear; zinc-finger, beta barrel, VWA domain,
gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP:
a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Length = 926
Score = 49.4 bits (117), Expect = 7e-07
Identities = 13/69 (18%), Positives = 15/69 (21%)
Query: 218 PSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLA 277
P+ PP A + M P P M P M
Sbjct: 26 PAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHL 85
Query: 278 MPPPPPPPN 286
P PN
Sbjct: 86 HNVPLVDPN 94
Score = 49.4 bits (117), Expect = 7e-07
Identities = 11/69 (15%), Positives = 13/69 (18%)
Query: 218 PSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLA 277
PS +PA + P P P MG
Sbjct: 54 PSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQ 113
Query: 278 MPPPPPPPN 286
P P
Sbjct: 114 QPMAAPAYG 122
Score = 49.1 bits (116), Expect = 9e-07
Identities = 8/64 (12%), Positives = 11/64 (17%)
Query: 222 PPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPP 281
+ P P QM PP G P + +
Sbjct: 19 NATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATT 78
Query: 282 PPPP 285
Sbjct: 79 SMND 82
Score = 49.1 bits (116), Expect = 1e-06
Identities = 10/65 (15%), Positives = 14/65 (21%)
Query: 222 PPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPP 281
P+ + + PP P Q P L + M M
Sbjct: 33 QDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVD 92
Query: 282 PPPPN 286
P
Sbjct: 93 PNAYM 97
Score = 47.1 bits (111), Expect = 3e-06
Identities = 8/65 (12%), Positives = 12/65 (18%)
Query: 222 PPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPP 281
PP P++ P N+P P+
Sbjct: 48 PPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGT 107
Query: 282 PPPPN 286
P
Sbjct: 108 PLQQQ 112
Score = 46.7 bits (110), Expect = 5e-06
Identities = 8/69 (11%), Positives = 13/69 (18%)
Query: 218 PSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLA 277
+ P PA +PP MG + +
Sbjct: 25 QPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMH 84
Query: 278 MPPPPPPPN 286
+ P
Sbjct: 85 LHNVPLVDP 93
Score = 46.4 bits (109), Expect = 7e-06
Identities = 8/77 (10%), Positives = 15/77 (19%)
Query: 209 QFSFRNESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPH 268
Q + + P +P P PP + L
Sbjct: 13 QLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQ 72
Query: 269 MGGMAPTLAMPPPPPPP 285
+ ++ P
Sbjct: 73 IDQATTSMNDMHLHNVP 89
Score = 45.6 bits (107), Expect = 1e-05
Identities = 7/69 (10%), Positives = 13/69 (18%)
Query: 218 PSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLA 277
PP + Q+ + + P M P +
Sbjct: 43 GQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVP 102
Query: 278 MPPPPPPPN 286
+ P
Sbjct: 103 VQMGTPLQQ 111
Score = 45.6 bits (107), Expect = 1e-05
Identities = 6/69 (8%), Positives = 9/69 (13%)
Query: 218 PSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLA 277
P + + P L P +
Sbjct: 45 MGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQ 104
Query: 278 MPPPPPPPN 286
M P
Sbjct: 105 MGTPLQQQQ 113
Score = 45.2 bits (106), Expect = 1e-05
Identities = 8/64 (12%), Positives = 9/64 (14%)
Query: 222 PPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPP 281
L P PP P G G+ P
Sbjct: 11 QAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLH 70
Query: 282 PPPP 285
Sbjct: 71 QQID 74
Score = 45.2 bits (106), Expect = 2e-05
Identities = 5/68 (7%), Positives = 9/68 (13%)
Query: 218 PSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLA 277
P P Q+ +M + +
Sbjct: 39 GMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQ 98
Query: 278 MPPPPPPP 285
P
Sbjct: 99 PQVPVQMG 106
Score = 45.2 bits (106), Expect = 2e-05
Identities = 9/69 (13%), Positives = 13/69 (18%), Gaps = 1/69 (1%)
Query: 218 PSFRPPPSPSPAIRNNLPPPPMLPPPP-PPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTL 276
P+ + P M P +M H +
Sbjct: 35 PAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPN 94
Query: 277 AMPPPPPPP 285
A P P
Sbjct: 95 AYMQPQVPV 103
Score = 44.0 bits (103), Expect = 3e-05
Identities = 6/64 (9%), Positives = 8/64 (12%)
Query: 222 PPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPP 281
P +PP P P + P
Sbjct: 12 AQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQ 71
Query: 282 PPPP 285
Sbjct: 72 QIDQ 75
Score = 43.7 bits (102), Expect = 4e-05
Identities = 6/65 (9%), Positives = 12/65 (18%)
Query: 222 PPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPP 281
P P+ + P + P G + P +
Sbjct: 22 PLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMN 81
Query: 282 PPPPN 286
+
Sbjct: 82 DMHLH 86
Score = 43.3 bits (101), Expect = 7e-05
Identities = 8/69 (11%), Positives = 10/69 (14%)
Query: 218 PSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLA 277
+ L P P + P AP
Sbjct: 63 TPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYG 122
Query: 278 MPPPPPPPN 286
P N
Sbjct: 123 QPSAAMGQN 131
Score = 43.3 bits (101), Expect = 7e-05
Identities = 10/72 (13%), Positives = 10/72 (13%), Gaps = 4/72 (5%)
Query: 218 PSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPP----PPPGLFGNMPPPPPHMGGMA 273
P P M P M P P G
Sbjct: 49 PQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTP 108
Query: 274 PTLAMPPPPPPP 285
P P
Sbjct: 109 LQQQQQPMAAPA 120
Score = 41.3 bits (96), Expect = 2e-04
Identities = 9/65 (13%), Positives = 14/65 (21%)
Query: 222 PPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPP 281
+ ++ + L P P P P+ AM
Sbjct: 72 QIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQN 131
Query: 282 PPPPN 286
P N
Sbjct: 132 MRPMN 136
Score = 40.2 bits (93), Expect = 7e-04
Identities = 9/52 (17%), Positives = 12/52 (23%)
Query: 235 PPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPPPPPPN 286
+ P P P P G + MPP P+
Sbjct: 4 HKKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPS 55
Score = 39.8 bits (92), Expect = 9e-04
Identities = 8/52 (15%), Positives = 11/52 (21%)
Query: 235 PPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPPPPPPN 286
P + + P P GM P A+P
Sbjct: 10 PQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQF 61
Score = 39.4 bits (91), Expect = 0.001
Identities = 10/69 (14%), Positives = 13/69 (18%)
Query: 218 PSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLA 277
+ L P P P MG P P M +
Sbjct: 74 DQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMR 133
Query: 278 MPPPPPPPN 286
P +
Sbjct: 134 PMNQLYPID 142
Score = 37.9 bits (87), Expect = 0.003
Identities = 7/68 (10%), Positives = 9/68 (13%)
Query: 218 PSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLA 277
+ N P P + P P
Sbjct: 73 IDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNM 132
Query: 278 MPPPPPPP 285
P P
Sbjct: 133 RPMNQLYP 140
Score = 36.0 bits (82), Expect = 0.014
Identities = 13/67 (19%), Positives = 15/67 (22%)
Query: 218 PSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLA 277
P A P M P Q P M M + P
Sbjct: 84 HLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPMNQLYPIDL 143
Query: 278 MPPPPPP 284
+ PPP
Sbjct: 144 LTELPPP 150
Score = 35.2 bits (80), Expect = 0.026
Identities = 10/68 (14%), Positives = 13/68 (19%)
Query: 218 PSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLA 277
P P P + P Q P G +
Sbjct: 83 MHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPMNQLYPID 142
Query: 278 MPPPPPPP 285
+ PPP
Sbjct: 143 LLTELPPP 150
Score = 33.6 bits (76), Expect = 0.083
Identities = 12/78 (15%), Positives = 15/78 (19%), Gaps = 4/78 (5%)
Query: 209 QFSFRNESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPH 268
Q S P + P + P Q P P P
Sbjct: 72 QIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAP----AYGQPSAA 127
Query: 269 MGGMAPTLAMPPPPPPPN 286
MG + P
Sbjct: 128 MGQNMRPMNQLYPIDLLT 145
Score = 32.1 bits (72), Expect = 0.23
Identities = 13/70 (18%), Positives = 18/70 (25%), Gaps = 1/70 (1%)
Query: 218 PSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPP-PGLFGNMPPPPPHMGGMAPTL 276
P P+ ++ +P P Q M P P P + L
Sbjct: 85 LHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPMNQLYPIDLL 144
Query: 277 AMPPPPPPPN 286
PPP
Sbjct: 145 TELPPPITDL 154
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid
cyclase fold, DDXXXXD motif, NDXXSXXXE MOT
methylisoborneol biosynthesis; HET: GST; 1.80A
{Streptomyces coelicolor} PDB: 3v1x_A*
Length = 433
Score = 42.4 bits (99), Expect = 1e-04
Identities = 11/70 (15%), Positives = 17/70 (24%)
Query: 216 SKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPT 275
S S +++ P + PP + PPPPP P
Sbjct: 3 SSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPP 62
Query: 276 LAMPPPPPPP 285
+
Sbjct: 63 DTVTGDSVLQ 72
Score = 38.6 bits (89), Expect = 0.001
Identities = 13/76 (17%), Positives = 19/76 (25%), Gaps = 6/76 (7%)
Query: 216 SKPSFRPPPSPSPAIRNNLPPP------PMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHM 269
PS + S + PP P PP P + + P
Sbjct: 22 VIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTGDSVLQRILRGPTGP 81
Query: 270 GGMAPTLAMPPPPPPP 285
G + A+ P
Sbjct: 82 GTTSLAPAVRYGRQPG 97
Score = 36.7 bits (84), Expect = 0.006
Identities = 13/72 (18%), Positives = 16/72 (22%), Gaps = 1/72 (1%)
Query: 215 ESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAP 274
P ++ + P P PG PP G P
Sbjct: 55 APAAGNPPDTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPG-PEAPASAPPAAGRAVP 113
Query: 275 TLAMPPPPPPPN 286
L P P P
Sbjct: 114 GLYHHPVPEPDP 125
Score = 35.5 bits (81), Expect = 0.019
Identities = 15/72 (20%), Positives = 19/72 (26%), Gaps = 4/72 (5%)
Query: 218 PSFRPPPSPSPAIRNNLPPPP----MLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMA 273
S P I + + PP + P PPPP PP G
Sbjct: 11 SSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTGDSV 70
Query: 274 PTLAMPPPPPPP 285
+ P P
Sbjct: 71 LQRILRGPTGPG 82
Score = 34.7 bits (79), Expect = 0.027
Identities = 9/56 (16%), Positives = 12/56 (21%), Gaps = 4/56 (7%)
Query: 235 PPPPMLPPPPPPQMMGP----PPPPPGLFGNMPPPPPHMGGMAPTLAMPPPPPPPN 286
P M+ P + PP P P PP+
Sbjct: 8 HHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPD 63
Score = 28.6 bits (63), Expect = 2.4
Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 3/52 (5%)
Query: 218 PSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHM 269
P+ S +PA+R P P P PP PGL+ + P P +
Sbjct: 78 PTGPGTTSLAPAVRYGRQPGPEAPASAPP---AAGRAVPGLYHHPVPEPDPV 126
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25,
CFIM68, CPSF5, CPSF6, CPSF, 3' END processing,
processing, cleavage factor; 2.90A {Homo sapiens} PDB:
3q2t_C
Length = 229
Score = 41.6 bits (97), Expect = 1e-04
Identities = 11/71 (15%), Positives = 14/71 (19%)
Query: 213 RNESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGM 272
+ E + PP P G P + G P P G
Sbjct: 154 QFEMQSRKTTQSGQMSGEGKAGPPGGSSRAAFPQGGRGRGRFPGAVPGGDRFPGPAGPGG 213
Query: 273 APTLAMPPPPP 283
P
Sbjct: 214 PPPPFPAGQTH 224
Score = 35.5 bits (81), Expect = 0.010
Identities = 16/80 (20%), Positives = 19/80 (23%), Gaps = 2/80 (2%)
Query: 197 THWNKDTKQFFLQFSFRNESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPP-- 254
T NK F S + P ++ P P
Sbjct: 145 TPVNKQFLSQFEMQSRKTTQSGQMSGEGKAGPPGGSSRAAFPQGGRGRGRFPGAVPGGDR 204
Query: 255 PPGLFGNMPPPPPHMGGMAP 274
PG G PPPP G
Sbjct: 205 FPGPAGPGGPPPPFPAGQTH 224
Score = 35.5 bits (81), Expect = 0.011
Identities = 8/64 (12%), Positives = 10/64 (15%)
Query: 223 PPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPPP 282
S + + P F G P P P
Sbjct: 149 KQFLSQFEMQSRKTTQSGQMSGEGKAGPPGGSSRAAFPQGGRGRGRFPGAVPGGDRFPGP 208
Query: 283 PPPN 286
P
Sbjct: 209 AGPG 212
Score = 34.7 bits (79), Expect = 0.024
Identities = 15/71 (21%), Positives = 17/71 (23%), Gaps = 3/71 (4%)
Query: 216 SKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPT 275
F + PP + P G P P G P
Sbjct: 151 FLSQFEMQSRKTTQSGQMSGEGKAGPPGGSSRAAFPQGGRGR--GRFPGAVP-GGDRFPG 207
Query: 276 LAMPPPPPPPN 286
A P PPPP
Sbjct: 208 PAGPGGPPPPF 218
Score = 31.6 bits (71), Expect = 0.21
Identities = 10/48 (20%), Positives = 10/48 (20%)
Query: 221 RPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPH 268
R R P P PPPP G H
Sbjct: 182 RAAFPQGGRGRGRFPGAVPGGDRFPGPAGPGGPPPPFPAGQTHHHHHH 229
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici
SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens}
PDB: 3cw1_A
Length = 231
Score = 41.6 bits (97), Expect = 1e-04
Identities = 18/70 (25%), Positives = 22/70 (31%), Gaps = 1/70 (1%)
Query: 218 PSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMG-GMAPTL 276
+ + + PP PPPP G PPP PP G+ P
Sbjct: 150 VAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGR 209
Query: 277 AMPPPPPPPN 286
P PPP
Sbjct: 210 GTPMGMPPPG 219
Score = 40.8 bits (95), Expect = 2e-04
Identities = 15/65 (23%), Positives = 17/65 (26%)
Query: 221 RPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPP 280
R PS + + P G PPPP G P M P
Sbjct: 132 RGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGP 191
Query: 281 PPPPP 285
PP
Sbjct: 192 PPGMR 196
Score = 40.0 bits (93), Expect = 4e-04
Identities = 16/65 (24%), Positives = 17/65 (26%)
Query: 222 PPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPP 281
A P P G PPPP G P GM P + P
Sbjct: 145 QGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMG 204
Query: 282 PPPPN 286
PP
Sbjct: 205 IPPGR 209
Score = 39.6 bits (92), Expect = 4e-04
Identities = 22/69 (31%), Positives = 23/69 (33%)
Query: 218 PSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLA 277
+ PPPPM PPP MMGPPP G PP G
Sbjct: 158 TASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPP 217
Query: 278 MPPPPPPPN 286
PPPP
Sbjct: 218 PGMRPPPPG 226
Score = 39.6 bits (92), Expect = 5e-04
Identities = 12/68 (17%), Positives = 15/68 (22%)
Query: 218 PSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLA 277
P + M P + G PP GG P +
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMG 180
Query: 278 MPPPPPPP 285
PPP
Sbjct: 181 RGAPPPGM 188
Score = 39.6 bits (92), Expect = 6e-04
Identities = 15/70 (21%), Positives = 18/70 (25%)
Query: 216 SKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPT 275
S+ P + A + P PPPP G PP
Sbjct: 138 SQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRP 197
Query: 276 LAMPPPPPPP 285
PP PP
Sbjct: 198 PMGPPMGIPP 207
Score = 39.2 bits (91), Expect = 6e-04
Identities = 14/64 (21%), Positives = 15/64 (23%)
Query: 222 PPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPP 281
P P P L P P Q+M P G
Sbjct: 115 PAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGG 174
Query: 282 PPPP 285
PPPP
Sbjct: 175 PPPP 178
Score = 38.5 bits (89), Expect = 0.001
Identities = 7/68 (10%), Positives = 8/68 (11%)
Query: 218 PSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLA 277
P + P P M
Sbjct: 125 AGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAP 184
Query: 278 MPPPPPPP 285
P PP
Sbjct: 185 PPGMMGPP 192
Score = 35.4 bits (81), Expect = 0.011
Identities = 9/65 (13%), Positives = 12/65 (18%), Gaps = 1/65 (1%)
Query: 222 PPPSPSPAIRNNLPPPPMLPPPPPPQM-MGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPP 280
P + + P P + PP G
Sbjct: 130 PVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMM 189
Query: 281 PPPPP 285
PPP
Sbjct: 190 GPPPG 194
Score = 35.4 bits (81), Expect = 0.014
Identities = 19/59 (32%), Positives = 20/59 (33%)
Query: 218 PSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTL 276
P R P P P PP P M P PPG M PPP M P +
Sbjct: 169 PPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGM 227
Score = 33.9 bits (77), Expect = 0.043
Identities = 12/68 (17%), Positives = 15/68 (22%)
Query: 218 PSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLA 277
P P P +P P P + P G P G +A A
Sbjct: 96 PLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAA 155
Query: 278 MPPPPPPP 285
Sbjct: 156 AATASIAG 163
Score = 31.2 bits (70), Expect = 0.28
Identities = 11/69 (15%), Positives = 13/69 (18%)
Query: 218 PSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLA 277
P +P P P + GP G A
Sbjct: 104 PGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAG 163
Query: 278 MPPPPPPPN 286
P PP
Sbjct: 164 APTQYPPGR 172
Score = 27.3 bits (60), Expect = 5.1
Identities = 12/53 (22%), Positives = 14/53 (26%)
Query: 218 PSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMG 270
P P + P + PP P G PPPP G
Sbjct: 177 PPMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGMRG 229
Score = 26.9 bits (59), Expect = 6.9
Identities = 7/72 (9%), Positives = 11/72 (15%)
Query: 215 ESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAP 274
P A + P M P G + P +
Sbjct: 87 PKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQG 146
Query: 275 TLAMPPPPPPPN 286
+
Sbjct: 147 RGTVAAAAAAAT 158
>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein,
helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis}
SCOP: g.37.1.4 g.37.1.4
Length = 127
Score = 38.0 bits (87), Expect = 6e-04
Identities = 14/69 (20%), Positives = 23/69 (33%)
Query: 39 DLNKDPYFMKNHLGSYECKLCLTLHNNEGSYLAHTQGKKHQANLARRAAKEAKDAPQQPA 98
+N + +CK+C + +E LAH Q +KH + R A +
Sbjct: 18 AVNSLIRENSHIFSDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAK 77
Query: 99 PEKPRVEPK 107
K
Sbjct: 78 KFKAAPAEI 86
Score = 29.5 bits (65), Expect = 0.58
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 56 CKLCLTLHNNEGSYLAHTQGKKHQANLARR 85
C +C ++ +H GK H NL R
Sbjct: 96 CPVCNMTFSSPVVAESHYIGKTHIKNLRLR 125
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus} PDB: 3lvh_A
Length = 624
Score = 38.8 bits (90), Expect = 0.001
Identities = 14/65 (21%), Positives = 18/65 (27%), Gaps = 7/65 (10%)
Query: 209 QFSFRNESKPSFRPPPSPSPAIRNNLPP-PPMLPPPPPPQMMGPPPPPPGLFGNMPPPPP 267
S R E + + P + L P + PP P G P P P
Sbjct: 565 SESLRKEEEQATETQPIVYGQPQLMLTAGPSVAVPPQAPFGYGYTAPA------YGQPQP 618
Query: 268 HMGGM 272
G
Sbjct: 619 GFGYS 623
Score = 35.7 bits (82), Expect = 0.016
Identities = 8/42 (19%), Positives = 9/42 (21%)
Query: 241 PPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPPP 282
P G +PP P G P P
Sbjct: 577 ETQPIVYGQPQLMLTAGPSVAVPPQAPFGYGYTAPAYGQPQP 618
Score = 35.3 bits (81), Expect = 0.023
Identities = 10/49 (20%), Positives = 15/49 (30%)
Query: 214 NESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNM 262
E++P P ++ PP P P PG +M
Sbjct: 576 TETQPIVYGQPQLMLTAGPSVAVPPQAPFGYGYTAPAYGQPQPGFGYSM 624
Score = 33.4 bits (76), Expect = 0.092
Identities = 8/43 (18%), Positives = 8/43 (18%)
Query: 241 PPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPPPP 283
P P PP G A P P
Sbjct: 576 TETQPIVYGQPQLMLTAGPSVAVPPQAPFGYGYTAPAYGQPQP 618
Score = 31.5 bits (71), Expect = 0.33
Identities = 11/46 (23%), Positives = 14/46 (30%), Gaps = 3/46 (6%)
Query: 241 PPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPPPPPPN 286
PQ+M P + P P G AP P P +
Sbjct: 581 IVYGQPQLMLTAGPSVAV---PPQAPFGYGYTAPAYGQPQPGFGYS 623
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 37.6 bits (87), Expect = 0.004
Identities = 19/72 (26%), Positives = 21/72 (29%), Gaps = 7/72 (9%)
Query: 213 RNESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGM 272
+ + P PP P PPQ P PP G PPP
Sbjct: 374 MMAMMQKMQQQQAAYPPQGYAPPPQGYPPQGYPPQGYPPQGYPPQ--GYPPPPQGA---- 427
Query: 273 APTLAMPPPPPP 284
P PP PP
Sbjct: 428 -PPQGAPPAAPP 438
Score = 33.0 bits (75), Expect = 0.10
Identities = 18/80 (22%), Positives = 23/80 (28%), Gaps = 5/80 (6%)
Query: 211 SFRNESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPP--PPPGLFGNMPPPP-- 266
S + + + + PPQ PPP PP + PP
Sbjct: 355 PAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAYPPQGYAPPPQGYPPQGYPPQGYPPQG 414
Query: 267 -PHMGGMAPTLAMPPPPPPP 285
P G P PP PP
Sbjct: 415 YPPQGYPPPPQGAPPQGAPP 434
Score = 32.2 bits (73), Expect = 0.18
Identities = 19/61 (31%), Positives = 21/61 (34%), Gaps = 7/61 (11%)
Query: 213 RNESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPP---PPPGLFGNMPPPPPHM 269
+ + P P P PP P PPQ PPP PP G PP P
Sbjct: 384 QQAAYPPQGYAPPPQGYPPQGYPPQGYPPQGYPPQGYPPPPQGAPPQG----APPAAPPQ 439
Query: 270 G 270
G
Sbjct: 440 G 440
Score = 31.0 bits (70), Expect = 0.44
Identities = 16/47 (34%), Positives = 17/47 (36%), Gaps = 4/47 (8%)
Query: 216 SKPSFRPPPSPSPAIR--NNLPPPPMLPPPP--PPQMMGPPPPPPGL 258
P PP P PP PPP PPQ P PP G+
Sbjct: 395 PPPQGYPPQGYPPQGYPPQGYPPQGYPPPPQGAPPQGAPPAAPPQGV 441
Score = 27.6 bits (61), Expect = 5.1
Identities = 17/79 (21%), Positives = 22/79 (27%), Gaps = 8/79 (10%)
Query: 214 NESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPP-----PPPGLFGNMPPPPPH 268
P+ + A + + Q PP PP G PP +
Sbjct: 351 ETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAYPPQGYAPPPQGYPPQGYPPQGY 410
Query: 269 MGGMAPTLAMPPPP---PP 284
P PPPP PP
Sbjct: 411 PPQGYPPQGYPPPPQGAPP 429
>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr
kinase, pseudokinase, FHA domain, REG phosphorylation;
HET: TPO; 2.71A {Mycobacterium tuberculosis}
Length = 157
Score = 34.5 bits (79), Expect = 0.016
Identities = 10/72 (13%), Positives = 16/72 (22%)
Query: 211 SFRNESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMG 270
S ++ S P S + P Q P P G G
Sbjct: 3 SSQHHHHHSSGLVPRGSHMPQGGGYAEPAGRDYDYGQSGAPDYGQPAPGGYSGYGQGGYG 62
Query: 271 GMAPTLAMPPPP 282
++ +
Sbjct: 63 SAGTSVTLQLDD 74
Score = 32.9 bits (75), Expect = 0.048
Identities = 9/61 (14%), Positives = 12/61 (19%), Gaps = 2/61 (3%)
Query: 225 SPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPPPPP 284
S ++ P P P +G P G AP
Sbjct: 3 SSQHHHHHSSGLVPRGSHMPQGGGYAEPAGRDYDYG--QSGAPDYGQPAPGGYSGYGQGG 60
Query: 285 P 285
Sbjct: 61 Y 61
Score = 29.5 bits (66), Expect = 0.71
Identities = 7/51 (13%), Positives = 9/51 (17%)
Query: 235 PPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPPPPPP 285
P +P G G P GG +
Sbjct: 16 PRGSHMPQGGGYAEPAGRDYDYGQSGAPDYGQPAPGGYSGYGQGGYGSAGT 66
Score = 27.9 bits (62), Expect = 2.3
Identities = 7/67 (10%), Positives = 9/67 (13%), Gaps = 2/67 (2%)
Query: 219 SFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAM 278
S + S + P P G P G
Sbjct: 3 SSQHHHHHSSGLVPRGSHMPQGGGYAEP--AGRDYDYGQSGAPDYGQPAPGGYSGYGQGG 60
Query: 279 PPPPPPP 285
Sbjct: 61 YGSAGTS 67
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition,
kinase-INH complex, rubredoxin fold, TPR domain,
transferase; HET: AXX; 2.40A {Mycobacterium
tuberculosis}
Length = 681
Score = 35.6 bits (82), Expect = 0.017
Identities = 6/57 (10%), Positives = 15/57 (26%)
Query: 229 AIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPPPPPP 285
+R + +P P + P G+ + ++ G +
Sbjct: 326 VLREVVAQDTGVPRPGLSTIFSPSRSTFGVDLLVAHTDVYLDGQVHAEKLTANEIVT 382
Score = 29.4 bits (66), Expect = 1.5
Identities = 8/63 (12%), Positives = 14/63 (22%), Gaps = 4/63 (6%)
Query: 221 RPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPP 280
+ P P + P L G + + L++P
Sbjct: 333 QDTGVPRPGLSTIFSPSRSTFGVDLL----VAHTDVYLDGQVHAEKLTANEIVTALSVPL 388
Query: 281 PPP 283
P
Sbjct: 389 VDP 391
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus
interaction, metal-binding, nucleus, receptor,
transcription, transcription regulation, zinc-FIN
activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB:
3dzu_A* 3e00_A*
Length = 467
Score = 35.5 bits (81), Expect = 0.017
Identities = 18/72 (25%), Positives = 22/72 (30%), Gaps = 5/72 (6%)
Query: 218 PSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPP----PPGLFGNMPPPPPHMGGMA 273
PS P P L P+ P MGPP P G P P +G
Sbjct: 36 PSLHPSLGPGIGSPGQL-HSPISTLSSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFST 94
Query: 274 PTLAMPPPPPPP 285
+ + P P
Sbjct: 95 GSPQLSSPMNPV 106
Score = 33.9 bits (77), Expect = 0.055
Identities = 15/66 (22%), Positives = 22/66 (33%), Gaps = 1/66 (1%)
Query: 222 PPPSPSPAIRNNLPPPPMLPPPPPPQMMG-PPPPPPGLFGNMPPPPPHMGGMAPTLAMPP 280
P + S I PP ++ P P M P P G P M ++ + + P
Sbjct: 55 PISTLSSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKP 114
Query: 281 PPPPPN 286
P
Sbjct: 115 PLGLNG 120
Score = 32.0 bits (72), Expect = 0.23
Identities = 13/70 (18%), Positives = 15/70 (21%), Gaps = 1/70 (1%)
Query: 218 PSFRPPPSP-SPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTL 276
S P S A + P P + G PP M P
Sbjct: 22 SSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPINGMGPPFSVISSPMGPHS 81
Query: 277 AMPPPPPPPN 286
P P
Sbjct: 82 MSVPTTPTLG 91
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 35.6 bits (81), Expect = 0.021
Identities = 39/332 (11%), Positives = 80/332 (24%), Gaps = 103/332 (31%)
Query: 22 SNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCLTL-HNNEGSYLAHTQGKKHQA 80
+D ++ D K+ L E + G+ Q
Sbjct: 17 QYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE 76
Query: 81 NLARRAAKEA------------KDAPQQPAPEK----------------------PRVEP 106
+ ++ +E K +QP+ R++P
Sbjct: 77 EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQP 136
Query: 107 KKFVKIG----RPGYRVTKQRDPSNGQQSLLFQV--DYP---EIADDVF---------PR 148
++ RP V +G+ + V Y ++ +F P
Sbjct: 137 YLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPE 196
Query: 149 ----------HRFMSAYEQRIEPPD---------RKWQYLLFAAEPY------------- 176
++ + R + + L ++PY
Sbjct: 197 TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA 256
Query: 177 ETI-AFKVPSREV----DKGDTKFWTHWNKDTKQFFLQFSFRNESKPSFRPPPSPSPAIR 231
+ AF + + + K T F + T L + + P S +
Sbjct: 257 KAWNAFNLSCKILLTTRFKQVTDFLS--AATTTHISL-----DHHSMTLTPDEVKS-LLL 308
Query: 232 NNLP-PPPMLPPPPPPQMMGPPPPPPGLFGNM 262
L P L P +++ P +
Sbjct: 309 KYLDCRPQDL----PREVLTTNPRRLSIIAES 336
Score = 32.1 bits (72), Expect = 0.24
Identities = 32/260 (12%), Positives = 62/260 (23%), Gaps = 84/260 (32%)
Query: 19 WSESNRDRRERLRQLALETID--LNKDPY-----FMKN-------------HLGSYEC-- 56
W N D+ + + +L ++ + + F + + +
Sbjct: 347 WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMV 406
Query: 57 -------KLCLTLHNNEGSYLAHTQGKKHQANLARRAAKEAKDAPQQPAPEKPRVEPKKF 109
+ E + ++ + + + +
Sbjct: 407 VVNKLHKYSLVEKQPKESTISIP--------SIYLEL--------KVKLENEYALH-RSI 449
Query: 110 VKIGRPGYRVTKQRDPSNGQQSLLFQVDYPEIA-----------DDVFPR----HRFMSA 154
V Y + K D + L Q Y I +F RF+
Sbjct: 450 VD----HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFL-- 503
Query: 155 YEQRIEPPDRKWQY------LLFAAEPYET-IAFKVPSREVDKGD-TKFW------THWN 200
EQ+I W L + Y+ I P E F +
Sbjct: 504 -EQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICS 562
Query: 201 KDTKQFFLQFSFRNESKPSF 220
K T L+ + E + F
Sbjct: 563 KYTD--LLRIALMAEDEAIF 580
Score = 29.1 bits (64), Expect = 2.2
Identities = 32/285 (11%), Positives = 62/285 (21%), Gaps = 110/285 (38%)
Query: 14 GGVASWSESNRDRRERLRQL--ALETIDLNKDPYF----MKNHLGSYEC-KLCLTL---- 62
+++ N R + +L AL +L + G K + L
Sbjct: 121 NDNQVFAKYNVSRLQPYLKLRQALL--ELRPAKNVLIDGVL---G---SGKTWVALDVCL 172
Query: 63 -------HNNEGSYLAHTQGKKH--------QANLARRAAKEAKDAPQQPAPEKPRVEPK 107
+ + +L + L + + K R+
Sbjct: 173 SYKVQCKMDFKIFWL--NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH-- 228
Query: 108 KFVKIGRPGYRVTKQRDPSNGQQSLLFQVDYPE---IADDV--------F---------- 146
+ + LL Y + +V F
Sbjct: 229 -----------SIQAEL-----RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTT 272
Query: 147 -------------PRHRFMSAYEQRIEPPDRKWQYLLFAAEPYETIAFKVPSREVDKGD- 192
H + + + P + K L + + +P REV +
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL----DCRPQDLP-REVLTTNP 327
Query: 193 ----------------TKFWTHWNKDTKQFFLQFSFRNESKPSFR 221
W H N D ++ S +R
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR 372
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring
E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A
{Saccharomyces cerevisiae}
Length = 371
Score = 34.9 bits (79), Expect = 0.021
Identities = 7/62 (11%), Positives = 11/62 (17%)
Query: 224 PSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPPPP 283
+P AI P P ++ P P +
Sbjct: 2 LTPLSAITVRSMEGPPTVQQQSPSVIRQSPTQRRKTSTTSSTSRAPPPTNPDASSSSSSF 61
Query: 284 PP 285
Sbjct: 62 AV 63
Score = 32.6 bits (73), Expect = 0.15
Identities = 9/66 (13%), Positives = 17/66 (25%), Gaps = 1/66 (1%)
Query: 222 PPPSPSPAIRN-NLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPP 280
P + +R+ PP P + + PP A + +
Sbjct: 2 LTPLSAITVRSMEGPPTVQQQSPSVIRQSPTQRRKTSTTSSTSRAPPPTNPDASSSSSSF 61
Query: 281 PPPPPN 286
P +
Sbjct: 62 AVPTIH 67
Score = 31.8 bits (71), Expect = 0.24
Identities = 8/53 (15%), Positives = 11/53 (20%)
Query: 216 SKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPH 268
S SP++ P PPP P +
Sbjct: 12 SMEGPPTVQQQSPSVIRQSPTQRRKTSTTSSTSRAPPPTNPDASSSSSSFAVP 64
Score = 31.4 bits (70), Expect = 0.35
Identities = 9/60 (15%), Positives = 12/60 (20%), Gaps = 1/60 (1%)
Query: 227 SPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPPPPPPN 286
S + + M PP Q P AP P +
Sbjct: 1 SLTPLSAITVRSMEGPPTVQQQS-PSVIRQSPTQRRKTSTTSSTSRAPPPTNPDASSSSS 59
Score = 30.7 bits (68), Expect = 0.56
Identities = 7/52 (13%), Positives = 11/52 (21%)
Query: 216 SKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPP 267
+ S PP+ + + P PPP
Sbjct: 9 TVRSMEGPPTVQQQSPSVIRQSPTQRRKTSTTSSTSRAPPPTNPDASSSSSS 60
Score = 26.8 bits (58), Expect = 8.4
Identities = 5/65 (7%), Positives = 9/65 (13%), Gaps = 4/65 (6%)
Query: 205 QFFLQFSFRNESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPP 264
S + P + P P +
Sbjct: 6 SAITVRSMEGPPTVQQQSPSVIRQSPTQRRKTSTTSSTSRAPPPTNPDASSS----SSSF 61
Query: 265 PPPHM 269
P +
Sbjct: 62 AVPTI 66
>3a58_A Exocyst complex component SEC3; protein complex, PH domain, GTPase,
membrane traffic, coiled coil, exocytosis,
phosphoprotein; HET: GNP; 2.60A {Saccharomyces
cerevisiae}
Length = 320
Score = 34.5 bits (78), Expect = 0.027
Identities = 10/67 (14%), Positives = 13/67 (19%)
Query: 218 PSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLA 277
S P SP+ N P P + P +L
Sbjct: 253 GSVSPIKSPTSNFTTNTTQSVGSVPFSAPTERTRRSETESVNPVSTPASVEYHAGMKSLN 312
Query: 278 MPPPPPP 284
P
Sbjct: 313 KAPYSSN 319
Score = 31.1 bits (69), Expect = 0.43
Identities = 7/75 (9%), Positives = 19/75 (25%)
Query: 212 FRNESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGG 271
F + + R + P + + P Q +G P +
Sbjct: 236 FYLDERSYQRAVITNRPGSVSPIKSPTSNFTTNTTQSVGSVPFSAPTERTRRSETESVNP 295
Query: 272 MAPTLAMPPPPPPPN 286
++ ++ +
Sbjct: 296 VSTPASVEYHAGMKS 310
Score = 30.7 bits (68), Expect = 0.48
Identities = 7/51 (13%), Positives = 11/51 (21%)
Query: 216 SKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPP 266
+ S P +P R + P P + L
Sbjct: 269 TTQSVGSVPFSAPTERTRRSETESVNPVSTPASVEYHAGMKSLNKAPYSSN 319
>2vg3_A Undecaprenyl pyrophosphate synthetase; transferase, cell WALL
biogenesis/degradation, cell cycle, P transferase; HET:
GPP; 1.8A {Mycobacterium tuberculosis} PDB: 2vg2_A*
2vg4_A
Length = 284
Score = 34.5 bits (80), Expect = 0.027
Identities = 13/50 (26%), Positives = 15/50 (30%)
Query: 218 PSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPP 267
P P P P + P + P P GP PP P P
Sbjct: 2 PQLPPAPDDYPTFPDTSTWPVVFPELPAAPYGGPCRPPQHTSKAAAPRIP 51
Score = 29.5 bits (67), Expect = 1.1
Identities = 12/42 (28%), Positives = 14/42 (33%)
Query: 222 PPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMP 263
P S P + LP P P PPQ P +P
Sbjct: 15 PDTSTWPVVFPELPAAPYGGPCRPPQHTSKAAAPRIPADRLP 56
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane
protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP:
c.30.1.5 d.142.1.3 PDB: 1px2_A*
Length = 422
Score = 34.8 bits (79), Expect = 0.029
Identities = 12/64 (18%), Positives = 16/64 (25%)
Query: 214 NESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMA 273
+P PP + SP + P P PG G +
Sbjct: 27 QRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSGGGGFFSSLSNAVK 86
Query: 274 PTLA 277
T A
Sbjct: 87 QTTA 90
Score = 34.8 bits (79), Expect = 0.029
Identities = 7/76 (9%), Positives = 14/76 (18%), Gaps = 5/76 (6%)
Query: 216 SKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNM-----PPPPPHMG 270
+ P +P A + P P G F ++
Sbjct: 35 PPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSGGGGFFSSLSNAVKQTTAAAAA 94
Query: 271 GMAPTLAMPPPPPPPN 286
+ +
Sbjct: 95 TFSEQVGGGSGGAGRG 110
Score = 34.4 bits (78), Expect = 0.033
Identities = 10/52 (19%), Positives = 12/52 (23%)
Query: 235 PPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPPPPPPN 286
PPPPPP P P + +P P
Sbjct: 25 DLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSGGGG 76
Score = 34.4 bits (78), Expect = 0.037
Identities = 10/61 (16%), Positives = 16/61 (26%)
Query: 207 FLQFSFRNESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPP 266
+L+ + + + P + R PPPP P P
Sbjct: 4 YLRRRLSDSNFMANLPNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVAS 63
Query: 267 P 267
P
Sbjct: 64 P 64
Score = 34.1 bits (77), Expect = 0.044
Identities = 12/53 (22%), Positives = 13/53 (24%), Gaps = 5/53 (9%)
Query: 233 NLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPPPPPP 285
N + P PPP P P A T A P P
Sbjct: 20 NGYMTDLQRPQPPPPPPSAASPGAT-----PGSAAASAERASTAAPVASPAAP 67
Score = 31.4 bits (70), Expect = 0.39
Identities = 13/52 (25%), Positives = 15/52 (28%), Gaps = 4/52 (7%)
Query: 234 LPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPPPPPP 285
+ PPPPP P PG A +A P P P
Sbjct: 23 MTDLQRPQPPPPPPSAASPGATPGS----AAASAERASTAAPVASPAAPSPG 70
Score = 30.6 bits (68), Expect = 0.65
Identities = 6/49 (12%), Positives = 7/49 (14%)
Query: 218 PSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPP 266
P+ P P P P P
Sbjct: 19 PNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAP 67
Score = 29.4 bits (65), Expect = 1.4
Identities = 9/72 (12%), Positives = 13/72 (18%)
Query: 210 FSFRNESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHM 269
S N + + PPP P P + P
Sbjct: 9 LSDSNFMANLPNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPS 68
Query: 270 GGMAPTLAMPPP 281
G +
Sbjct: 69 PGSSGGGGFFSS 80
Score = 28.7 bits (63), Expect = 2.8
Identities = 11/46 (23%), Positives = 12/46 (26%), Gaps = 1/46 (2%)
Query: 240 LPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPPPPPP 285
LP + P PPPP P P A P
Sbjct: 18 LPNGYMTDLQRPQPPPPPPSAASPGATPG-SAAASAERASTAAPVA 62
>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin,
armadillo repeat, nuclear receptor LIGA binding domain,
protein binding; HET: P6L; 2.76A {Homo sapiens}
Length = 352
Score = 34.2 bits (78), Expect = 0.037
Identities = 14/87 (16%), Positives = 25/87 (28%), Gaps = 8/87 (9%)
Query: 208 LQFSFRNESKPSFRPPPSPSPAIRNNLPPP---PMLPPPPPPQMM-----GPPPPPPGLF 259
L+ ++ + + S AI+N P+ PP P +
Sbjct: 2 LKLEAMSQVIQAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMP 61
Query: 260 GNMPPPPPHMGGMAPTLAMPPPPPPPN 286
+ G P+ A+ P P
Sbjct: 62 PHGSLQGYQTYGHFPSRAIKSEYPDPY 88
Score = 33.0 bits (75), Expect = 0.090
Identities = 11/71 (15%), Positives = 16/71 (22%), Gaps = 2/71 (2%)
Query: 216 SKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPT 275
+ PP + P +PP Q P P P+ +P
Sbjct: 36 LNHAALPPTDYDRSPFVTSPISMTMPPHGSLQGYQTYGHFPSRAIKSEYPDPYT--SSPE 93
Query: 276 LAMPPPPPPPN 286
M
Sbjct: 94 SIMGYSYMDSY 104
Score = 31.9 bits (72), Expect = 0.22
Identities = 11/74 (14%), Positives = 15/74 (20%), Gaps = 5/74 (6%)
Query: 213 RNESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGM 272
+ P P S + +L P + P P P MG
Sbjct: 45 DYDRSPFVTSPISMTMPPHGSLQGYQTYGHFPSRAIKSEYPDPY-----TSSPESIMGYS 99
Query: 273 APTLAMPPPPPPPN 286
P
Sbjct: 100 YMDSYQTSSPASIP 113
Score = 30.0 bits (67), Expect = 0.94
Identities = 10/68 (14%), Positives = 16/68 (23%), Gaps = 4/68 (5%)
Query: 218 PSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLA 277
P P+ R+ P+ PP +G+ P P +
Sbjct: 35 PLNHAALPPTDYDRSPFVTSPISMTMPPH----GSLQGYQTYGHFPSRAIKSEYPDPYTS 90
Query: 278 MPPPPPPP 285
P
Sbjct: 91 SPESIMGY 98
>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl
reductase, ketoacyl synthase, ketoacyl reductase; 3.1A
{Thermomyces lanuginosus} PDB: 2uvb_A*
Length = 1878
Score = 33.0 bits (75), Expect = 0.12
Identities = 15/89 (16%), Positives = 25/89 (28%), Gaps = 4/89 (4%)
Query: 178 TIAFKVPSREVDKGDTKFWTHWNKDTKQFFLQFSFRNESKPSFRPPPSPSPAIRNNLPPP 237
T+ K + + + + KD K+ + + S + A P
Sbjct: 60 TLQSKYEAYDAATSVQRQILCYCKDAKEIYYDVEPIEDEPEPTPAAASSADAAPAAAPAA 119
Query: 238 PMLPPPPPPQMMGPPPPPPGLFGNMPPPP 266
P P P P P G + P
Sbjct: 120 PAAPAAAPA----PAPASAGPAAPVQDAP 144
Score = 28.0 bits (62), Expect = 4.6
Identities = 11/61 (18%), Positives = 12/61 (19%), Gaps = 7/61 (11%)
Query: 223 PPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPPP 282
P P P P P P P P G A + P
Sbjct: 94 PIEDEPEPTPAAASSADAAPAAAPAAPAAPAAAP-------APAPASAGPAAPVQDAPVT 146
Query: 283 P 283
Sbjct: 147 A 147
>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis,
malonyl/palmitoyl transferase, phosphopantetheine,
transferase; HET: GVL FMN; 3.10A {Saccharomyces
cerevisiae} PDB: 2vkz_A* 3hmj_A*
Length = 1887
Score = 33.0 bits (75), Expect = 0.13
Identities = 11/90 (12%), Positives = 19/90 (21%), Gaps = 5/90 (5%)
Query: 178 TIAFKVPSREVDKGDTKFWTHWNKDTKQFFLQFSFRNESKPSFRPPPSPSPAIRNNLPPP 237
T+ K S + + ++KD K+ + + P
Sbjct: 60 TLKNKYESYDAALSLHREILCYSKDAKEIYYTPDPSELAAKEEPAKEEAPAP-----TPA 114
Query: 238 PMLPPPPPPQMMGPPPPPPGLFGNMPPPPP 267
P P P P
Sbjct: 115 ASAPAPAAAAPAPVAAAAPAAAAAEIADEP 144
>4dgw_A PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 402
Score = 32.5 bits (73), Expect = 0.13
Identities = 9/60 (15%), Positives = 20/60 (33%)
Query: 28 ERLRQLALETIDLNKDPYFMKNHLGSYECKLCLTLHNNEGSYLAHTQGKKHQANLARRAA 87
+ L + + +++ C C + +H GK H+ N ++R
Sbjct: 267 AAVENLIKSDFEHSYCRGSLRSEAKGIYCPFCSRWFKTSSVFESHLVGKIHKKNESKRRN 326
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase,
transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7
Length = 535
Score = 32.5 bits (74), Expect = 0.14
Identities = 14/79 (17%), Positives = 18/79 (22%), Gaps = 6/79 (7%)
Query: 214 NESKPSFRP------PPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPP 267
N+SKP P+ + P P P G P P
Sbjct: 3 NKSKPKDASQRRRSLEPAENVHGAGGGAFPASQTPSKPASADGHRGPSAAFAPAAAEPKL 62
Query: 268 HMGGMAPTLAMPPPPPPPN 286
G + P P
Sbjct: 63 FGGFNSSDTVTSPQRAGPL 81
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription,
mRNA, multiprotein complex; HET: UTP; 2.30A
{Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A
1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A*
1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A*
1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Length = 1733
Score = 32.8 bits (74), Expect = 0.15
Identities = 12/69 (17%), Positives = 15/69 (21%)
Query: 216 SKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPT 275
S + + P P G PG P P +PT
Sbjct: 1500 SNDAMAGGFTAYGGADYGEATSPFGAYGEAPTSPGFGVSSPGFSPTSPTYSPTSPAYSPT 1559
Query: 276 LAMPPPPPP 284
P P
Sbjct: 1560 SPSYSPTSP 1568
Score = 30.8 bits (69), Expect = 0.67
Identities = 11/64 (17%), Positives = 13/64 (20%)
Query: 222 PPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPP 281
P G P PG + P P +PT P
Sbjct: 1499 GSNDAMAGGFTAYGGADYGEATSPFGAYGEAPTSPGFGVSSPGFSPTSPTYSPTSPAYSP 1558
Query: 282 PPPP 285
P
Sbjct: 1559 TSPS 1562
>1q1q_A SULT2B1A, sulfotransferase family, cytosolic, 2B, member 1 isoform
A; pregnenolone, PAP; HET: A3P NHE; 2.91A {Homo sapiens}
SCOP: c.37.1.5
Length = 350
Score = 32.2 bits (73), Expect = 0.19
Identities = 15/67 (22%), Positives = 17/67 (25%), Gaps = 4/67 (5%)
Query: 201 KDTKQFFLQFSFRNESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFG 260
+ F + P P P P P P P P P PG
Sbjct: 287 RGMPTFPWDEDPEEDGSPDPEPSPEPEPKPSLEPNTSLEREPRPNSS----PSPSPGQAS 342
Query: 261 NMPPPPP 267
P P P
Sbjct: 343 ETPHPRP 349
>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex,
inter-protein beta sheet, protein-protein, metal
transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A
{Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A
Length = 229
Score = 31.6 bits (71), Expect = 0.24
Identities = 17/64 (26%), Positives = 21/64 (32%)
Query: 222 PPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPP 281
P+P+ I + P L PP Q P P P PP + P P
Sbjct: 27 ELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKP 86
Query: 282 PPPP 285
P P
Sbjct: 87 KPKP 90
Score = 30.8 bits (69), Expect = 0.34
Identities = 12/71 (16%), Positives = 12/71 (16%)
Query: 215 ESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAP 274
E P P P P P P P P P P
Sbjct: 56 EPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPF 115
Query: 275 TLAMPPPPPPP 285
P
Sbjct: 116 ENTAPARLTSS 126
Score = 30.8 bits (69), Expect = 0.35
Identities = 12/65 (18%), Positives = 13/65 (20%)
Query: 222 PPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPP 281
P P A P P P P P P + P AP
Sbjct: 68 IPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSST 127
Query: 282 PPPPN 286
Sbjct: 128 ATAAT 132
Score = 30.5 bits (68), Expect = 0.49
Identities = 11/65 (16%), Positives = 17/65 (26%)
Query: 222 PPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPP 281
PP +P + P P P P ++ P + P P A +
Sbjct: 70 EPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTAT 129
Query: 282 PPPPN 286
Sbjct: 130 AATSK 134
Score = 30.5 bits (68), Expect = 0.52
Identities = 13/72 (18%), Positives = 18/72 (25%)
Query: 215 ESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAP 274
E +P P P + P P P P P + + P P P
Sbjct: 62 EPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPA 121
Query: 275 TLAMPPPPPPPN 286
L +
Sbjct: 122 RLTSSTATAATS 133
Score = 30.1 bits (67), Expect = 0.69
Identities = 13/71 (18%), Positives = 20/71 (28%)
Query: 215 ESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAP 274
+ +P P P P + P P+ PP ++ P P P
Sbjct: 44 DLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRD 103
Query: 275 TLAMPPPPPPP 285
+ P P
Sbjct: 104 VKPVESRPASP 114
Score = 29.3 bits (65), Expect = 1.2
Identities = 10/71 (14%), Positives = 12/71 (16%)
Query: 215 ESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAP 274
+P P P P P + P P P P
Sbjct: 58 VVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFEN 117
Query: 275 TLAMPPPPPPP 285
T
Sbjct: 118 TAPARLTSSTA 128
Score = 29.3 bits (65), Expect = 1.4
Identities = 9/64 (14%), Positives = 12/64 (18%)
Query: 222 PPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPP 281
P +P + P P P Q P P +
Sbjct: 72 PKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAA 131
Query: 282 PPPP 285
P
Sbjct: 132 TSKP 135
Score = 28.9 bits (64), Expect = 1.8
Identities = 8/69 (11%), Positives = 11/69 (15%)
Query: 217 KPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTL 276
+P P P P + P P +
Sbjct: 70 EPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTAT 129
Query: 277 AMPPPPPPP 285
A P
Sbjct: 130 AATSKPVTS 138
Score = 28.5 bits (63), Expect = 2.0
Identities = 8/71 (11%), Positives = 13/71 (18%)
Query: 215 ESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAP 274
+ KP +P P P ++ P P
Sbjct: 81 KPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSVA 140
Query: 275 TLAMPPPPPPP 285
+ P
Sbjct: 141 SGPRALSRNQP 151
Score = 27.8 bits (61), Expect = 3.8
Identities = 10/73 (13%), Positives = 18/73 (24%)
Query: 213 RNESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGM 272
+ + KP +P + ++ P P P P +
Sbjct: 83 KPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSVASG 142
Query: 273 APTLAMPPPPPPP 285
L+ P P
Sbjct: 143 PRALSRNQPQYPA 155
Score = 27.4 bits (60), Expect = 5.7
Identities = 10/65 (15%), Positives = 14/65 (21%)
Query: 222 PPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPP 281
P P + P P+ P+ P P + T A P
Sbjct: 76 PVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATSKP 135
Query: 282 PPPPN 286
Sbjct: 136 VTSVA 140
Score = 27.0 bits (59), Expect = 7.5
Identities = 9/71 (12%), Positives = 15/71 (21%)
Query: 215 ESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAP 274
+ P P P P + P + + P P A
Sbjct: 73 KEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAAT 132
Query: 275 TLAMPPPPPPP 285
+ + P
Sbjct: 133 SKPVTSVASGP 143
Score = 26.6 bits (58), Expect = 9.1
Identities = 10/70 (14%), Positives = 15/70 (21%)
Query: 217 KPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTL 276
K + P P + P + P + P F N P
Sbjct: 73 KEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAAT 132
Query: 277 AMPPPPPPPN 286
+ P
Sbjct: 133 SKPVTSVASG 142
>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics; 5.00A
{Barmah forest virus}
Length = 253
Score = 31.5 bits (71), Expect = 0.25
Identities = 13/68 (19%), Positives = 15/68 (22%)
Query: 218 PSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLA 277
+ P+P R P P PP L P
Sbjct: 8 TFYGRRWRPAPVQRYIPQPQPPAPPRRRRGPSQLQQLVAALGALALQPKQKQKRAQKKPK 67
Query: 278 MPPPPPPP 285
PPP P
Sbjct: 68 KTPPPKPK 75
Score = 30.8 bits (69), Expect = 0.37
Identities = 7/61 (11%), Positives = 12/61 (19%)
Query: 226 PSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPPPPPP 285
P+ P + P PP + +G +A
Sbjct: 5 PTQTFYGRRWRPAPVQRYIPQPQPPAPPRRRRGPSQLQQLVAALGALALQPKQKQKRAQK 64
Query: 286 N 286
Sbjct: 65 K 65
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae}
SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB:
1pd0_A 1pd1_A
Length = 810
Score = 31.9 bits (71), Expect = 0.26
Identities = 14/49 (28%), Positives = 17/49 (34%), Gaps = 2/49 (4%)
Query: 235 PPPPMLPPPPPPQMMGPP--PPPPGLFGNMPPPPPHMGGMAPTLAMPPP 281
P P Q M P P L +PPP + P L +PP
Sbjct: 2 APAYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPE 50
Score = 28.4 bits (62), Expect = 2.9
Identities = 8/43 (18%), Positives = 11/43 (25%)
Query: 243 PPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPPPPPP 285
P N P + + P + PPPP
Sbjct: 2 APAYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPP 44
Score = 28.4 bits (62), Expect = 2.9
Identities = 15/65 (23%), Positives = 22/65 (33%), Gaps = 4/65 (6%)
Query: 222 PPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPP 281
PS A+ N+ P L P + PPP +PPPP + +
Sbjct: 4 AYGQPSAAMGQNMRPMNQLYPIDLLTEL----PPPITDLTLPPPPLVIPPERMLVPSELS 59
Query: 282 PPPPN 286
P+
Sbjct: 60 NASPD 64
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP,
translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Length = 504
Score = 31.4 bits (72), Expect = 0.32
Identities = 10/74 (13%), Positives = 16/74 (21%), Gaps = 2/74 (2%)
Query: 201 KDTKQFFLQFSFRNESKPSFRPPPSPSPAIRNNLPP--PPMLPPPPPPQMMGPPPPPPGL 258
Q + + S + L M+ P M G +
Sbjct: 425 TKFAQMVKKMGGIKGLFKGGDMSKNVSQSQMAKLNQQMAKMMDPRVLHHMGGMAGLQSMM 484
Query: 259 FGNMPPPPPHMGGM 272
+M GM
Sbjct: 485 RQFQQGAAGNMKGM 498
Score = 27.2 bits (61), Expect = 7.1
Identities = 9/44 (20%), Positives = 11/44 (25%), Gaps = 1/44 (2%)
Query: 237 PPMLPPPPPPQMMGPPPPPPGLFGNMPPP-PPHMGGMAPTLAMP 279
+ M P HMGGMA +M
Sbjct: 441 FKGGDMSKNVSQSQMAKLNQQMAKMMDPRVLHHMGGMAGLQSMM 484
>2rkv_A Trichothecene 3-O-acetyltransferase; BAHD superfamily, deoxyniv
T-2, acetyl COA, fusarium; HET: COA MPO ZBA; 1.60A
{Gibberella zeae} PDB: 3b2s_A* 3b30_A* 2rkt_A* 2zba_A*
Length = 451
Score = 31.4 bits (71), Expect = 0.36
Identities = 6/63 (9%), Positives = 10/63 (15%)
Query: 205 QFFLQFSFRNESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPP 264
S + P + R + P P +
Sbjct: 166 AVIRLLSKACRNDPFTEEEMTAMNLDRKTIVPYLENYTIGPEVDHQIVKADVAGGDAVLT 225
Query: 265 PPP 267
P
Sbjct: 226 PVS 228
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation,
ATP-binding, cytoplasm, mitochondrion,
nucleotide-binding, nucleus; 2.95A {Saccharomyces
cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Length = 409
Score = 31.1 bits (71), Expect = 0.41
Identities = 12/83 (14%), Positives = 28/83 (33%), Gaps = 6/83 (7%)
Query: 16 VASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCLTLHNN------EGSY 69
+ + ++ER + E + + + Y C +C E +
Sbjct: 323 SNDFISNRPIKQERAPKALEELLSKGETTMKKLDDWTHYTCNVCRNADGKNVVAIGEKYW 382
Query: 70 LAHTQGKKHQANLARRAAKEAKD 92
H ++H++NL R + +
Sbjct: 383 KIHLGSRRHKSNLKRNTRQADFE 405
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos
taurus} SCOP: i.9.1.1
Length = 390
Score = 31.0 bits (69), Expect = 0.41
Identities = 10/52 (19%), Positives = 12/52 (23%)
Query: 235 PPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPPPPPPN 286
P P P P P PG G P + P +
Sbjct: 332 TWNPGRPEPGSAGTWNPGRPEPGSAGTWNTGSSGSSSFRPDSSGHGNIRPSS 383
Score = 31.0 bits (69), Expect = 0.45
Identities = 14/70 (20%), Positives = 15/70 (21%)
Query: 216 SKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPT 275
P P + P P P P PG G P P G
Sbjct: 261 QGTGLAPGSPRKPGTSSIGNVNPGSYGPGSSGTWNPGRPEPGSAGTWNPGRPEPGSAGTW 320
Query: 276 LAMPPPPPPP 285
P P
Sbjct: 321 NPGRPEPGSA 330
Score = 30.2 bits (67), Expect = 0.80
Identities = 10/74 (13%), Positives = 15/74 (20%), Gaps = 2/74 (2%)
Query: 215 ESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPP--PHMGGM 272
+S+ P + GL P P +G +
Sbjct: 222 KSQLQEAPLEWKALLEMQQTKMVLETFGGDGHARGDSVSQGTGLAPGSPRKPGTSSIGNV 281
Query: 273 APTLAMPPPPPPPN 286
P P N
Sbjct: 282 NPGSYGPGSSGTWN 295
Score = 30.2 bits (67), Expect = 0.87
Identities = 14/70 (20%), Positives = 15/70 (21%), Gaps = 2/70 (2%)
Query: 217 KPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTL 276
P P P + P P P P P PG G P P G
Sbjct: 303 SAGTWNPGRPEPG--SAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWN 360
Query: 277 AMPPPPPPPN 286
Sbjct: 361 TGSSGSSSFR 370
Score = 30.2 bits (67), Expect = 0.88
Identities = 10/65 (15%), Positives = 14/65 (21%)
Query: 222 PPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPP 281
+ + P P PG +G + G P A
Sbjct: 249 GGDGHARGDSVSQGTGLAPGSPRKPGTSSIGNVNPGSYGPGSSGTWNPGRPEPGSAGTWN 308
Query: 282 PPPPN 286
P P
Sbjct: 309 PGRPE 313
Score = 29.8 bits (66), Expect = 0.92
Identities = 8/73 (10%), Positives = 12/73 (16%)
Query: 214 NESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMA 273
S + M+ G P P G +
Sbjct: 218 PREFKSQLQEAPLEWKALLEMQQTKMVLETFGGDGHARGDSVSQGTGLAPGSPRKPGTSS 277
Query: 274 PTLAMPPPPPPPN 286
P P +
Sbjct: 278 IGNVNPGSYGPGS 290
Score = 29.8 bits (66), Expect = 0.93
Identities = 10/65 (15%), Positives = 15/65 (23%)
Query: 221 RPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPP 280
+ ++ P P P +G P G+ P P
Sbjct: 250 GDGHARGDSVSQGTGLAPGSPRKPGTSSIGNVNPGSYGPGSSGTWNPGRPEPGSAGTWNP 309
Query: 281 PPPPP 285
P P
Sbjct: 310 GRPEP 314
Score = 29.4 bits (65), Expect = 1.2
Identities = 11/73 (15%), Positives = 14/73 (19%)
Query: 214 NESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMA 273
+ S + P P P G + P P G
Sbjct: 249 GGDGHARGDSVSQGTGLAPGSPRKPGTSSIGNVNPGSYGPGSSGTWNPGRPEPGSAGTWN 308
Query: 274 PTLAMPPPPPPPN 286
P P N
Sbjct: 309 PGRPEPGSAGTWN 321
Score = 28.3 bits (62), Expect = 3.4
Identities = 10/71 (14%), Positives = 15/71 (21%), Gaps = 2/71 (2%)
Query: 216 SKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPT 275
+P + +P P P P+ PG + G P
Sbjct: 297 GRPEPGSAGTWNPGRPE--PGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPG 354
Query: 276 LAMPPPPPPPN 286
A
Sbjct: 355 SAGTWNTGSSG 365
Score = 27.9 bits (61), Expect = 4.1
Identities = 13/70 (18%), Positives = 16/70 (22%)
Query: 216 SKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPT 275
KP + +P P P P G P G+ P
Sbjct: 271 RKPGTSSIGNVNPGSYGPGSSGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSA 330
Query: 276 LAMPPPPPPP 285
P P P
Sbjct: 331 GTWNPGRPEP 340
Score = 27.9 bits (61), Expect = 4.2
Identities = 13/68 (19%), Positives = 17/68 (25%)
Query: 218 PSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLA 277
S+ P S + P P P+ PG + G P A
Sbjct: 284 GSYGPGSSGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSA 343
Query: 278 MPPPPPPP 285
P P
Sbjct: 344 GTWNPGRP 351
Score = 27.9 bits (61), Expect = 4.4
Identities = 10/69 (14%), Positives = 12/69 (17%)
Query: 217 KPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTL 276
K S P P P Q G G+ G
Sbjct: 209 KMSTITGPVPREFKSQLQEAPLEWKALLEMQQTKMVLETFGGDGHARGDSVSQGTGLAPG 268
Query: 277 AMPPPPPPP 285
+ P
Sbjct: 269 SPRKPGTSS 277
Score = 27.5 bits (60), Expect = 4.8
Identities = 14/64 (21%), Positives = 15/64 (23%)
Query: 222 PPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPP 281
P + P P P P P PG G P P G P
Sbjct: 293 TWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPE 352
Query: 282 PPPP 285
P
Sbjct: 353 PGSA 356
>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase,
wild type, viral protein; 2.38A {Sindbis virus} SCOP:
b.47.1.3 PDB: 1ld4_A 3j0f_A
Length = 264
Score = 30.5 bits (68), Expect = 0.48
Identities = 12/59 (20%), Positives = 18/59 (30%)
Query: 227 SPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPPPPPP 285
+ R P P + P + P P GL + + + A P P P
Sbjct: 7 NMLGRRPFPAPTAMWRPRRRRQAAPMPARNGLASQIQQLTTAVSALVIGQATRPQNPRP 65
>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural
genomics, seattle S genomics center for infectious
disease, ssgcid; 1.90A {Entamoeba histolytica} PDB:
3sia_A 3sib_A
Length = 220
Score = 30.1 bits (68), Expect = 0.61
Identities = 8/36 (22%), Positives = 9/36 (25%)
Query: 249 MGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPPPPP 284
M PP L+ P MG P
Sbjct: 1 MQPPVANFCLWNLQPIQGSWMGAACIYQMPPSVRNT 36
>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural
genomics, infectious D center for structural genomics of
infectious diseases; HET: NAD; 2.05A {Bacillus anthracis
str} PDB: 3i3o_A*
Length = 291
Score = 30.2 bits (69), Expect = 0.62
Identities = 7/28 (25%), Positives = 8/28 (28%), Gaps = 3/28 (10%)
Query: 241 PPPPPPQMMGPPPPPPGLFGNMPPPPPH 268
P Q PG+ M P P
Sbjct: 10 FVTMPAQ---HQNKQPGIESLMNPLPQF 34
>3d5k_A OPRM, outer membrane protein OPRM; channel, beta-alpha-barrel,
antibiotic RES lipoprotein, palmitate, transmemb
transport; 2.40A {Pseudomonas aeruginosa} PDB: 1wp1_A
Length = 474
Score = 30.4 bits (69), Expect = 0.68
Identities = 6/24 (25%), Positives = 6/24 (25%)
Query: 235 PPPPMLPPPPPPQMMGPPPPPPGL 258
P LP P GL
Sbjct: 241 GIPANLPQGLGLDQTLLTEVPAGL 264
>2kpy_A Major pollen allergen ART V 1; defensin-like, poly-proline; NMR
{Artemisia vulgaris}
Length = 108
Score = 28.6 bits (63), Expect = 0.79
Identities = 18/47 (38%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Query: 222 PPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPH 268
PP + P P PP PPP G PP G G+ PPP H
Sbjct: 64 PPGAAPPPAAGGSPSPPADGGSPPPPADGGSPPVDG--GSPPPPSTH 108
Score = 28.2 bits (62), Expect = 1.3
Identities = 18/51 (35%), Positives = 20/51 (39%), Gaps = 5/51 (9%)
Query: 236 PPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPPPPPPN 286
P P PPP P PP G PPP G +P + PPPP
Sbjct: 62 PAPPGAAPPPAAGGSPSPPADG-----GSPPPPADGGSPPVDGGSPPPPST 107
Score = 27.8 bits (61), Expect = 1.6
Identities = 21/55 (38%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
Query: 218 PSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPP-----PGLFGNMPPPPP 267
+ PP +PA PPP P PP G PPPP P + G PPPP
Sbjct: 52 DCSKSPPGATPAPPGAAPPPAAGGSPSPPADGGSPPPPADGGSPPVDGGSPPPPS 106
Score = 27.1 bits (59), Expect = 3.3
Identities = 13/44 (29%), Positives = 13/44 (29%)
Query: 241 PPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPPPPP 284
PP P PP G P PP G P PP
Sbjct: 55 KSPPGATPAPPGAAPPPAAGGSPSPPADGGSPPPPADGGSPPVD 98
>1x9d_A Endoplasmic reticulum mannosyl-oligosaccharide 1,
2-alpha-mannosidase; substrate analogue, glycosyl
hydrolase; HET: SMD; 1.41A {Homo sapiens} SCOP:
a.102.2.1 PDB: 1fo3_A* 1fo2_A* 1fmi_A
Length = 538
Score = 30.4 bits (68), Expect = 0.81
Identities = 13/64 (20%), Positives = 16/64 (25%), Gaps = 1/64 (1%)
Query: 222 PPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPP 281
PPS P P+ G P + P G P+ P
Sbjct: 10 DPPSQDLKDGTQEEATKRQEAPVDPRPEGDPQRTVISWRGAVIEPEQ-GTELPSRRAEVP 68
Query: 282 PPPP 285
PP
Sbjct: 69 TKPP 72
>3dbg_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP170A1,
molecular mechanism, heme, iron, metal-binding,
monooxygenase; HET: HEM; 2.60A {Streptomyces coelicolor
A3} PDB: 3el3_A*
Length = 467
Score = 30.3 bits (69), Expect = 0.82
Identities = 8/31 (25%), Positives = 11/31 (35%), Gaps = 2/31 (6%)
Query: 235 PPPPMLPPPPPPQMMGPPPPPPG--LFGNMP 263
P P P++ PP G L G+
Sbjct: 8 PETRAPAAPGAPELREPPVAGGGVPLLGHGW 38
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase,
herbicide, sulfonylurea, thiamin diphosphate, FAD,
inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A
{Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5
c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Length = 677
Score = 29.9 bits (68), Expect = 0.93
Identities = 10/74 (13%), Positives = 15/74 (20%)
Query: 203 TKQFFLQFSFRNESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNM 262
+ + + F SP + + M P P P
Sbjct: 9 SGLVPRGSGMKETAAAKFERQHMDSPDLGTDDDDKAMGSAPSFNVDPLEQPAEPSKLAKK 68
Query: 263 PPPPPHMGGMAPTL 276
P M L
Sbjct: 69 LRAEPDMDTSFVGL 82
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal
transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB:
2jc2_A
Length = 198
Score = 29.3 bits (66), Expect = 1.1
Identities = 6/24 (25%), Positives = 6/24 (25%)
Query: 235 PPPPMLPPPPPPQMMGPPPPPPGL 258
P P P G P P
Sbjct: 4 PGHPGAGGGYYPGGYGGAPGGPAF 27
Score = 27.0 bits (60), Expect = 5.2
Identities = 8/29 (27%), Positives = 8/29 (27%)
Query: 239 MLPPPPPPQMMGPPPPPPGLFGNMPPPPP 267
M P P G P G P P
Sbjct: 1 MAYPGHPGAGGGYYPGGYGGAPGGPAFPG 29
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition,
ATP-binding, DNA- cell division, DNA translocation,
KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas
aeruginosa} PDB: 2iuu_A*
Length = 574
Score = 29.6 bits (67), Expect = 1.2
Identities = 13/74 (17%), Positives = 21/74 (28%)
Query: 213 RNESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGM 272
+ + + R PPP + PPP P+ P + G
Sbjct: 10 KAKERLLEREEALAKHMSEREKRPPPKIDPPPSPKAPEPSKRVLKEKQAPLFVDTAVEGT 69
Query: 273 APTLAMPPPPPPPN 286
P L++ P
Sbjct: 70 LPPLSLLDPAEVKQ 83
Score = 28.9 bits (65), Expect = 1.9
Identities = 14/78 (17%), Positives = 19/78 (24%), Gaps = 4/78 (5%)
Query: 213 RNESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGM 272
R E + A+ ++ PPP P P P P
Sbjct: 5 RREQSKAKERLLEREEALAKHMSEREKRPPPKIDPPPSPKAPEPSKRVLKEKQAPLFVDT 64
Query: 273 APTLAMPP----PPPPPN 286
A +PP P
Sbjct: 65 AVEGTLPPLSLLDPAEVK 82
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici
SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens}
PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Length = 282
Score = 29.5 bits (65), Expect = 1.3
Identities = 15/89 (16%), Positives = 25/89 (28%)
Query: 198 HWNKDTKQFFLQFSFRNESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPG 257
+ + ++ + E+ + + P+ PP Q PG
Sbjct: 100 TFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPG 159
Query: 258 LFGNMPPPPPHMGGMAPTLAMPPPPPPPN 286
MPPP +PP PP
Sbjct: 160 QPPYMPPPGMIPPPGLAPGQIPPGAMPPQ 188
>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane
fusion, viral P glycoprotein B, HSV-1, membrane; HET:
NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A*
3nwd_A*
Length = 703
Score = 29.5 bits (66), Expect = 1.6
Identities = 14/64 (21%), Positives = 17/64 (26%), Gaps = 5/64 (7%)
Query: 223 PPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPPP 282
P +P+ + P P PP G P P P PP P
Sbjct: 2 PAAPTSPGTPGVAAATQAANGGPAT---PAPPALGAAPTGDPKPKKNK--KPKNPTPPRP 56
Query: 283 PPPN 286
N
Sbjct: 57 AGDN 60
Score = 29.2 bits (65), Expect = 1.7
Identities = 14/71 (19%), Positives = 20/71 (28%)
Query: 216 SKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPT 275
+ P+ P + A + P PP P P P PP G T
Sbjct: 3 AAPTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNAT 62
Query: 276 LAMPPPPPPPN 286
+A +
Sbjct: 63 VAAGHATLREH 73
Score = 27.2 bits (60), Expect = 8.3
Identities = 9/64 (14%), Positives = 14/64 (21%)
Query: 222 PPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPP 281
P +P+P P P PP P G + + +
Sbjct: 23 GPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNATVAAGHATLREHLRDIKAENT 82
Query: 282 PPPP 285
Sbjct: 83 DANF 86
>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI,
protein structure initiative, center for eukaryotic
structural genomics, CESG; NMR {Homo sapiens} SCOP:
g.37.1.4
Length = 124
Score = 28.1 bits (62), Expect = 1.6
Identities = 8/44 (18%), Positives = 15/44 (34%), Gaps = 5/44 (11%)
Query: 51 LGSYECKLCLTLHNNEGSYLAHTQGKKHQANLARRAAKEAKDAP 94
G + C C + + H + K H ++ K+ P
Sbjct: 48 GGLHRCLACARYFIDSTNLKTHFRSKDH-----KKRLKQLSVEP 86
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate
dehydrogenase...; oxidoreductase, multienzyme complex;
HET: TPW; 2.35A {Bacillus stearothermophilus} PDB:
3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Length = 428
Score = 29.1 bits (66), Expect = 1.7
Identities = 6/57 (10%), Positives = 8/57 (14%), Gaps = 5/57 (8%)
Query: 223 PPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMP 279
+ P P G +AMP
Sbjct: 82 ENMTFKGQEQEEAKKEEKTETVSKEEKVDAVAPNA-----PAAEAEAGPNRRVIAMP 133
>2j89_A Methionine sulfoxide reductase A; MSRA, poplar, oxidoreductase;
1.7A {Populus trichocarpa}
Length = 261
Score = 28.9 bits (65), Expect = 1.7
Identities = 15/69 (21%), Positives = 17/69 (24%)
Query: 216 SKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPT 275
SKP P + P L P + FG P P M P
Sbjct: 24 SKPFLSPSAKSQLSHSKPFNFPRTLKPISYYKPPMANILSKLGFGTRSPDPSTMDPTIPQ 83
Query: 276 LAMPPPPPP 284
P P
Sbjct: 84 GPDDDLPAP 92
>1g9l_A Polyadenylate-binding protein 1; all-helical domain, RNA binding
protein; NMR {Homo sapiens} SCOP: a.144.1.1 PDB: 1jgn_A
1jh4_A
Length = 144
Score = 27.9 bits (61), Expect = 2.2
Identities = 5/51 (9%), Positives = 9/51 (17%)
Query: 235 PPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPPPPPP 285
P P + + G+ A+ P
Sbjct: 2 PLGSAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEP 52
Score = 27.1 bits (59), Expect = 4.5
Identities = 6/49 (12%), Positives = 9/49 (18%)
Query: 238 PMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPPPPPPN 286
P+ + P G P T+ P
Sbjct: 2 PLGSAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQ 50
Score = 27.1 bits (59), Expect = 4.7
Identities = 3/52 (5%), Positives = 6/52 (11%)
Query: 235 PPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPPPPPPN 286
P ++ P P +
Sbjct: 5 SAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEPLTAS 56
Score = 26.3 bits (57), Expect = 9.1
Identities = 11/62 (17%), Positives = 16/62 (25%), Gaps = 2/62 (3%)
Query: 226 PSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPP--HMGGMAPTLAMPPPPP 283
P + P +P + P + P H+ G P A
Sbjct: 2 PLGSAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEPLTASMLASA 61
Query: 284 PP 285
PP
Sbjct: 62 PP 63
>1eys_C Photosynthetic reaction center; membrane protein complex, electron
transport; HET: BGL BCL BPH MQ8 HEM CRT LDA PEF; 2.20A
{Thermochromatium tepidum} SCOP: a.138.1.2
Length = 382
Score = 28.7 bits (63), Expect = 2.3
Identities = 10/67 (14%), Positives = 14/67 (20%), Gaps = 3/67 (4%)
Query: 222 PPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPG---LFGNMPPPPPHMGGMAPTLAM 278
P + + LP P P P P G ++
Sbjct: 306 PGLYKTAVTQEALPGSAPASEAAPAAATEAAPEAPAQEVPAAEAVPAAAEPGAAEAAGSV 365
Query: 279 PPPPPPP 285
P P
Sbjct: 366 EPAPVEE 372
Score = 27.2 bits (59), Expect = 6.7
Identities = 7/64 (10%), Positives = 12/64 (18%)
Query: 222 PPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPP 281
+ + + P P P + P G +
Sbjct: 314 TQEALPGSAPASEAAPAAATEAAPEAPAQEVPAAEAVPAAAEPGAAEAAGSVEPAPVEEV 373
Query: 282 PPPP 285
P P
Sbjct: 374 APAP 377
>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural
genomics O infectious diseases, 3-layer(ABA) sandwich,
rossmann fold; HET: NAD; 1.25A {Salmonella enterica
subsp}
Length = 294
Score = 28.7 bits (65), Expect = 2.4
Identities = 8/28 (28%), Positives = 9/28 (32%), Gaps = 4/28 (14%)
Query: 241 PPPPPPQMMGPPPPPPGLFGNMPPPPPH 268
P Q P PG+ M P P
Sbjct: 13 TGEYPKQ----KQPAPGVQAKMTPVPDC 36
>4f6o_A Metacaspase-1; rossmann fold, hydrolase; HET: DFH; 1.68A
{Saccharomyces cerevisiae}
Length = 350
Score = 28.4 bits (62), Expect = 2.5
Identities = 9/52 (17%), Positives = 13/52 (25%), Gaps = 6/52 (11%)
Query: 217 KPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPH 268
+ + + P PPQ M PPP P +
Sbjct: 2 QAKAQLSNGYNN------PNVNASNMYGPPQNMSLPPPQTQTIQGTDQPYQY 47
Score = 27.6 bits (60), Expect = 5.7
Identities = 8/41 (19%), Positives = 12/41 (29%)
Query: 224 PSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPP 264
+P+ N PP + PPP P +
Sbjct: 12 NNPNVNASNMYGPPQNMSLPPPQTQTIQGTDQPYQYSQCTG 52
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.9 bits (64), Expect = 2.6
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 10/57 (17%)
Query: 191 GDTKFWTHWNKDTKQFFLQFSF----R-NESKPSFRPPPSP-SPAIRNNLPPP-PML 240
D+ W + ++ + F R E+ P+ PPS ++ NN P PML
Sbjct: 286 TDS--WESFFVSVRKA-ITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPML 339
>3gdb_A Endo-D, putative uncharacterized protein SPR0440;
alpha-beta-barrels, cell WALL, peptidoglycan-anchor,
secreted, hydrolase; HET: PGE; 1.87A {Streptococcus
pneumoniae} PDB: 2xqx_A
Length = 937
Score = 28.8 bits (63), Expect = 2.7
Identities = 6/71 (8%), Positives = 9/71 (12%)
Query: 215 ESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAP 274
E+ + S N + P
Sbjct: 28 ENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATASETASPASNEAATTET 87
Query: 275 TLAMPPPPPPP 285
A P
Sbjct: 88 AEAASAAKPEE 98
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface
adhesin WALL, peptidoglycan-anchor, cell adhesion; HET:
PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Length = 497
Score = 28.7 bits (62), Expect = 2.7
Identities = 14/93 (15%), Positives = 21/93 (22%), Gaps = 4/93 (4%)
Query: 193 TKFWTHWNKDTKQFFLQFSFRNESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPP 252
T+ + + + K N+P P PP + P
Sbjct: 402 ATSATNVMPVSDMPVVPGKDNTDGKKPNIWYSLNGKIRAVNVPKVTKEKPTPPVKPTAPT 461
Query: 253 PPPPGLFGNMPPPPPHMGGMAPTLAMPPPPPPP 285
P + P P P PP
Sbjct: 462 KPTYETEKPLKPAPVA----PNYEKEPTPPTRL 490
>3pnx_A Putative sulfurtransferase DSRE; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-biology; HET: MSE GOL; 1.92A {Syntrophomonas wolfei}
Length = 160
Score = 28.0 bits (62), Expect = 2.7
Identities = 5/41 (12%), Positives = 10/41 (24%), Gaps = 2/41 (4%)
Query: 236 PPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTL 276
Q P +P ++GG+ +
Sbjct: 53 KASQEDKSLYEQAF--SSLTPREAEELPLSKMNLGGIGKKM 91
>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein,
hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1
Length = 138
Score = 27.7 bits (61), Expect = 2.8
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 215 ESKPSFRPPPSPSPAIRNNLPPPPMLPPPPP 245
+ + P PS + +++ PPP++PPP P
Sbjct: 107 VAANATVSMPPPSSSPPSSVMPPPVMPPPSP 137
>3aqq_A Calcium-regulated heat stable protein 1; compact beta-barrel, cold
shock domain, ssDNA binding, DNA B protein; 2.80A {Homo
sapiens}
Length = 147
Score = 27.7 bits (61), Expect = 3.2
Identities = 13/48 (27%), Positives = 14/48 (29%), Gaps = 7/48 (14%)
Query: 219 SFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPP 266
S PPP P P P P L GN+ P P
Sbjct: 2 SSEPPPPPQP-------PTHQASVGLLDTPRSRERSPSPLRGNVVPSP 42
Score = 26.5 bits (58), Expect = 7.4
Identities = 9/34 (26%), Positives = 10/34 (29%)
Query: 241 PPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAP 274
PPP PP P P G + P
Sbjct: 7 PPPQPPTHQASVGLLDTPRSRERSPSPLRGNVVP 40
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle
transport, transport signal sequence, cytoplasm,
endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B
2nup_B 3egd_B 3egx_B
Length = 751
Score = 28.4 bits (62), Expect = 3.2
Identities = 10/42 (23%), Positives = 11/42 (26%), Gaps = 3/42 (7%)
Query: 223 PPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPP 264
P S P NL + P P P N P
Sbjct: 2 PESLRPV---NLTQERNILPMTPVWAPVPNLNADLKKLNCSP 40
>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB:
1dx1_A 1qlx_A 1qlz_A
Length = 219
Score = 27.9 bits (61), Expect = 3.3
Identities = 7/65 (10%), Positives = 8/65 (12%)
Query: 222 PPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPP 281
P P P G +G P M
Sbjct: 42 HGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGGWGQGGTHGQWNKPSKPKTNMKHV 101
Query: 282 PPPPN 286
Sbjct: 102 AGAAA 106
Score = 27.1 bits (59), Expect = 5.5
Identities = 10/69 (14%), Positives = 11/69 (15%)
Query: 218 PSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLA 277
P P G P G +G G
Sbjct: 29 RYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGGWGQGGTHGQW 88
Query: 278 MPPPPPPPN 286
P P N
Sbjct: 89 NKPSKPKTN 97
Score = 26.7 bits (58), Expect = 8.7
Identities = 11/65 (16%), Positives = 13/65 (20%), Gaps = 5/65 (7%)
Query: 226 PSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFG-----NMPPPPPHMGGMAPTLAMPP 280
+ R P PP G P G +G P G
Sbjct: 13 NTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQ 72
Query: 281 PPPPP 285
P
Sbjct: 73 PHGGG 77
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation,
staurosporine, transfe; HET: STU; 2.70A {Homo sapiens}
SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Length = 400
Score = 28.2 bits (63), Expect = 3.4
Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 213 RNESKPSFRPPPSPSPAIRN-NLPPPPMLPPPPPPQMMGPPPPPPGL 258
+ +S P P P+P P LP PP PPPPPPQ GL
Sbjct: 6 QGQSPPVPFPAPAPPPQPPTPALPHPPAQPPPPPPQQFPQFHVKSGL 52
Score = 27.8 bits (62), Expect = 5.0
Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 6/44 (13%)
Query: 214 NESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPG 257
+ S+ P P P+PA PPP P P P PPPPP
Sbjct: 3 SNSQGQSPPVPFPAPA------PPPQPPTPALPHPPAQPPPPPP 40
>1jvr_A HTLV-II MA, MA, human T-cell leukemia virus type II matrix protein;
HTLV-II matrix protein, retroviral matrix protein; NMR
{Human t-lymphotropic virus 2} SCOP: a.61.1.2
Length = 137
Score = 27.2 bits (59), Expect = 4.1
Identities = 13/40 (32%), Positives = 15/40 (37%)
Query: 235 PPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAP 274
P P P P P PPPPP PPP++
Sbjct: 95 PSAPAAPVPTPICPTTTPPPPPPPSPEAHVPPPYVEPTTT 134
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein,
lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A
{Dictyostelium discoideum} PDB: 2uuv_A*
Length = 584
Score = 27.8 bits (62), Expect = 4.4
Identities = 14/88 (15%), Positives = 22/88 (25%)
Query: 180 AFKVPSREVDKGDTKFWTHWNKDTKQFFLQFSFRNESKPSFRPPPSPSPAIRNNLPPPPM 239
A P +D W W K + + P P++R +
Sbjct: 2 AMGSPKEHIDLYQQIKWNGWGDTRKFLHQLKPSGTIAMTTPEVSSVPLPSLRGFIKKELT 61
Query: 240 LPPPPPPQMMGPPPPPPGLFGNMPPPPP 267
LP + P + PP
Sbjct: 62 LPGEEDKPFVLDETPALQIENIHVDPPK 89
>3pik_A Cation efflux system protein CUSC; beta-barrel, lipoprotein, outer
membrane; HET: UNL; 2.30A {Escherichia coli}
Length = 446
Score = 27.6 bits (62), Expect = 4.5
Identities = 3/24 (12%), Positives = 4/24 (16%)
Query: 235 PPPPMLPPPPPPQMMGPPPPPPGL 258
+ P GL
Sbjct: 232 YGKLPQAQTVNSDSLQSVKLPAGL 255
>2e1v_A Acyl transferase; BAHD superfamily, seleno-methionine derivative,
dendranthema morifolium, DMAT; 1.80A {Chrysanthemum x
morifolium} PDB: 2e1u_A 2e1t_A
Length = 454
Score = 28.0 bits (62), Expect = 4.7
Identities = 5/56 (8%), Positives = 12/56 (21%), Gaps = 1/56 (1%)
Query: 213 RNESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPH 268
R+ + P + P L + + ++ P
Sbjct: 190 RSGNNDESFLANGTRPLYDRIIKYPM-LDEAYLKRAKVESFNEDYVTQSLAGPSDK 244
Score = 27.2 bits (60), Expect = 6.2
Identities = 5/56 (8%), Positives = 8/56 (14%), Gaps = 2/56 (3%)
Query: 231 RNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPPPPPPN 286
R+ L P P + P +
Sbjct: 190 RSGNNDESFLANGTRPLYDRIIKYPM--LDEAYLKRAKVESFNEDYVTQSLAGPSD 243
>1fiw_A Beta-acrosin heavy chain; anti-parallel beta-barrel, hydrolase;
HET: NAG FUL BMA MAN PBZ; 2.10A {Ovis aries} SCOP:
b.47.1.2 PDB: 1fiz_A*
Length = 290
Score = 27.3 bits (61), Expect = 4.9
Identities = 10/46 (21%), Positives = 12/46 (26%), Gaps = 8/46 (17%)
Query: 214 NESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLF 259
+ P+ SPA P Q P PP F
Sbjct: 249 GSTAVHMIQLPTASPA-----STPGAQASSGSVQ---PSVRPPWFF 286
>2wsc_E PSAE, PSI-E A, photosystem I reaction center subunit IV A,
chloroplastic; photosynthesis, electron transfer,
membrane proteins, large complexes; HET: CL1 PQN BCR LMU
LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_E*
2wsf_E* 2o01_E* 3lw5_E*
Length = 143
Score = 26.9 bits (58), Expect = 5.1
Identities = 12/44 (27%), Positives = 16/44 (36%)
Query: 214 NESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPG 257
S+ R P+PA ++ P P P PPP G
Sbjct: 37 AGSRLVVRAAEDPAPASSSSKDSPAAAAAPDGATATKPKPPPIG 80
Score = 26.5 bits (57), Expect = 6.8
Identities = 7/40 (17%), Positives = 10/40 (25%)
Query: 209 QFSFRNESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQM 248
+ R P+ S P P PP +
Sbjct: 40 RLVVRAAEDPAPASSSSKDSPAAAAAPDGATATKPKPPPI 79
>1bt3_A Protein (catechol oxidase); dicopper enzyme, oxidoreductase; 2.50A
{Ipomoea batatas} SCOP: a.86.1.2 PDB: 1bt2_A 1bt1_A
1bug_A*
Length = 345
Score = 27.6 bits (60), Expect = 5.1
Identities = 11/44 (25%), Positives = 15/44 (34%)
Query: 224 PSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPP 267
P +P I + PP LPP PP + +P
Sbjct: 2 PIQAPEISKCVVPPADLPPGAVVDNCCPPVASNIVDYKLPAVTT 45
>2xr7_A Malonyltransferase; xenobiotics, naphthols; HET: MLC; 3.10A
{Nicotiana tabacum}
Length = 453
Score = 27.6 bits (61), Expect = 5.8
Identities = 5/45 (11%), Positives = 9/45 (20%)
Query: 222 PPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPP 266
P ++ P M + + PP
Sbjct: 193 LANEFIPFYDRSVIKDPNGVGMSIWNEMKKYKHMMKMSDVVTPPD 237
>2b0r_A Possible adenyl cyclase-associated protein; structural genomics
consortium, SGC, unknown function; 2.60A
{Cryptosporidium parvum}
Length = 202
Score = 26.9 bits (59), Expect = 6.5
Identities = 6/44 (13%), Positives = 9/44 (20%), Gaps = 5/44 (11%)
Query: 218 PSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGN 261
P S S Q++ P L +
Sbjct: 12 SGLVPRGSKSQI-----YLKKEKKMKAARQVVTNGSPKVELQKD 50
>3vr8_D Succinate dehydrogenase [ubiquinone] cytochrome B subunit,
mitochondrial; membrane protein, reductase, mitochondria
MEMB oxidoreductase; HET: FAD HEM RQX EPH; 2.81A
{Ascaris suum} PDB: 3vrb_D*
Length = 156
Score = 26.7 bits (58), Expect = 6.7
Identities = 5/47 (10%), Positives = 10/47 (21%)
Query: 208 LQFSFRNESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPP 254
+ S + + + PP P + P
Sbjct: 8 AIPLSARILRTSLIQRCAGATSAAVTGAAPPQFDPIAAEKGFKPLHS 54
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC;
1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Length = 391
Score = 27.1 bits (60), Expect = 6.9
Identities = 10/50 (20%), Positives = 13/50 (26%), Gaps = 2/50 (4%)
Query: 236 PPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPPPPPP 285
P P L P P + P G + P + G P
Sbjct: 173 PTPELILDPCPPSLQASDAPQGA--PVQYVPYNGSGAFPAWGAARTSARR 220
>3di5_A DINB-like protein; structural genomics, joint center for structural
genomics, J protein structure initiative, PSI-2; HET:
MSE; 2.01A {Bacillus cereus atcc 10987}
Length = 168
Score = 26.5 bits (58), Expect = 7.0
Identities = 5/22 (22%), Positives = 6/22 (27%)
Query: 244 PPPQMMGPPPPPPGLFGNMPPP 265
P + GP G P
Sbjct: 146 TVPGVYGPAKEEWATAGMEAPK 167
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati
enzyme discovery for natural product biosynthesis,
natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Length = 398
Score = 27.0 bits (60), Expect = 7.4
Identities = 10/49 (20%), Positives = 14/49 (28%)
Query: 223 PPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGG 271
P P + ++ PP M P P P G +P
Sbjct: 178 TDFPDPLLSIDVCPPSMEAQPKPGTTKMRYVPYNGRNDQVPSWVFEERK 226
>2wsd_A Spore coat protein A; oxidoreductase, multi-copper oxidase,
sporulation, COTA- LAC copper centre; 1.60A {Bacillus
subtilis} PDB: 1gsk_A 1hkp_A 1hkz_A 1hl0_A 1hl1_A
1of0_A* 1ogr_A 1uvw_A* 1w6l_A 1w6w_A 1w8e_A 2bhf_A
2x87_A 2x88_A* 4a67_A 4akq_A 4a68_A* 4akp_A* 4a66_A
4ako_A
Length = 513
Score = 27.4 bits (60), Expect = 7.4
Identities = 10/61 (16%), Positives = 13/61 (21%), Gaps = 5/61 (8%)
Query: 230 IRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNM-----PPPPPHMGGMAPTLAMPPPPPP 284
NNLP LP P + + P G +
Sbjct: 72 WMNNLPSTHFLPIDHTIHHSDSQHEEPEVKTVVHLHGGVTPDDSDGYPEAWFSKDFEQTG 131
Query: 285 P 285
P
Sbjct: 132 P 132
>2gj7_F Glycoprotein E; FC receptor, low resolution, immune
system-virus-viral prote complex; HET: NAG BMA MAN GAL
FUC; 5.00A {Human herpesvirus 1} SCOP: b.1.1.1
Length = 401
Score = 26.9 bits (58), Expect = 7.7
Identities = 11/73 (15%), Positives = 15/73 (20%)
Query: 199 WNKDTKQFFLQFSFRNESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGL 258
+ L P P P + PPP PP
Sbjct: 130 PARQVASVVLVVQPAPVPTPPPTPADYDEDDNDEGEDESLAGTPASGTPRLPPPPAPPRS 189
Query: 259 FGNMPPPPPHMGG 271
+ + P G
Sbjct: 190 WPSAPEVSHVRGV 202
>3cw1_L U1 small nuclear ribonucleoprotein C; PRE-mRNA splicing,
spliceosome, RNA-binding domain, SM fold, finger, RNA
recognition motif, 5' splice site; 5.49A {Homo sapiens}
PDB: 1uw2_A 2vrd_A
Length = 77
Score = 25.3 bits (55), Expect = 7.8
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 231 RNNLPPPPMLPPPPPPQMM 249
+ +PP P PPP M+
Sbjct: 59 QGKIPPTPFSAPPPAGAMI 77
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA
complex, RNA binding protein/RNA complex; NMR {Homo
sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Length = 229
Score = 26.9 bits (59), Expect = 7.9
Identities = 9/38 (23%), Positives = 11/38 (28%), Gaps = 4/38 (10%)
Query: 249 MGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPPPPPPN 286
MG + P HMG +A P N
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMGRIAI----PGLAGAGN 34
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis
orientalis} SCOP: c.87.1.5
Length = 415
Score = 27.1 bits (60), Expect = 8.1
Identities = 12/51 (23%), Positives = 13/51 (25%), Gaps = 5/51 (9%)
Query: 240 LPPPPPPQMMGPPPPP-----PGLFGNMPPPPPHMGGMAPTLAMPPPPPPP 285
LPP G P P L P + A L P P
Sbjct: 179 LPPVEDIFTFGYTDHPWVAADPVLAPLQPTDLDAVQTGAWILPDERPLSPE 229
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide
repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A
{Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3
b.26.1.2 PDB: 2fez_A*
Length = 388
Score = 27.0 bits (60), Expect = 8.2
Identities = 4/56 (7%), Positives = 10/56 (17%)
Query: 218 PSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMA 273
P + + A + G + +G +
Sbjct: 259 PLDAKKSAKTTAAGTVTVLDQRTMASGQQAVAYLHDIASGRGYPLQAAATRIGRLH 314
Score = 26.6 bits (59), Expect = 9.4
Identities = 5/62 (8%), Positives = 8/62 (12%), Gaps = 10/62 (16%)
Query: 226 PSPAIRN----------NLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPT 275
P P +R + + G
Sbjct: 243 PGPTLRALNERILRQQPLDAKKSAKTTAAGTVTVLDQRTMASGQQAVAYLHDIASGRGYP 302
Query: 276 LA 277
L
Sbjct: 303 LQ 304
>2cev_A Protein (arginase); enzyme, hydrolase, arginine hydrolysis,
nitrogen metabolism, manganese metalloenzyme; 2.15A
{Bacillus caldovelox} SCOP: c.42.1.1 PDB: 1cev_A 3cev_A*
4cev_A 5cev_A*
Length = 299
Score = 26.8 bits (60), Expect = 8.3
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 84 RRAAKEAKDAPQQPAPEKPRVEPKKFVKIG 113
+ A Q P+++P+ V IG
Sbjct: 144 AASLGFGHPALTQIGGYSPKIKPEHVVLIG 173
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 27.1 bits (60), Expect = 8.3
Identities = 4/39 (10%), Positives = 8/39 (20%)
Query: 235 PPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMA 273
+ P + P P + G+
Sbjct: 776 AAYAQVEIQPRANIQLDFPELKPYKQVKQIAPAELEGLL 814
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 26.7 bits (58), Expect = 8.6
Identities = 13/85 (15%), Positives = 25/85 (29%), Gaps = 38/85 (44%)
Query: 16 VASWSESNRDR-----------RERLRQLALETIDLNKDPYFMKNHLGSYECKLCLTLHN 64
+ W E R R + R+ A + ++ + +
Sbjct: 87 IRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEE-----WNQRQ-------------- 127
Query: 65 NEGSYLAHTQGKKHQANLARRAAKE 89
+E Q +K++ N R A K
Sbjct: 128 SE-------QVEKNKIN-NRIADKA 144
>3qt2_A Interleukin-5 receptor subunit alpha; cytokine type I receptor
fold, fibronectin type III modules, helical bundle,
cytokine, ligand-receptor complex; HET: BGC; 2.55A {Homo
sapiens}
Length = 317
Score = 26.8 bits (58), Expect = 8.9
Identities = 12/107 (11%), Positives = 26/107 (24%), Gaps = 4/107 (3%)
Query: 165 KWQYLLFAAEPYETIAFKVPSREVDKGDTKFWTHWNKDTKQFFLQ--FSFRNESKPSFRP 222
+W+ + + ++V + D + T + L FS +
Sbjct: 31 QWKPNPDQEQRNVNLEYQVKINAPKEDDYE--TRITESKAVTILHMGFSASVRTILQNDH 88
Query: 223 PPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHM 269
S L PP P + + + +
Sbjct: 89 SLLASSWASAELHAPPGSPGTSIVNLTCTTNTTEDNYSRLRSYQVSL 135
>3oii_A Essential for mitotic growth 1; EMG1, scnep1, spout, ribosome
biogenesis, methyltransferase, processing, ribosomal
protein; HET: SAH; 1.85A {Saccharomyces cerevisiae} PDB:
3oij_A* 3oin_A* 2v3j_A 2v3k_A*
Length = 253
Score = 26.5 bits (58), Expect = 8.9
Identities = 4/22 (18%), Positives = 5/22 (22%)
Query: 235 PPPPMLPPPPPPQMMGPPPPPP 256
P + P PP
Sbjct: 10 DALKGGDQKALPASLVPQAPPV 31
>1cja_A Protein (actin-fragmin kinase); transferase; HET: AMP; 2.90A
{Physarum polycephalum} SCOP: d.144.1.3
Length = 342
Score = 26.8 bits (58), Expect = 9.5
Identities = 13/51 (25%), Positives = 16/51 (31%)
Query: 216 SKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPP 266
K F P+PS AI ++L P P P PP
Sbjct: 8 EKELFTKLPAPSSAINSHLQPAKPKVPQKKPSKWDPPAEFKVDLSTAVSYN 58
>3m1c_B GL, envelope glycoprotein L; glycoprotein H, GH/GL, envelope
protein, HER simplex virus, disulfide bond, HOST cell
MEMB HOST endosome; HET: NAG XYL; 3.00A {Human
herpesvirus 2}
Length = 204
Score = 26.5 bits (57), Expect = 9.7
Identities = 12/65 (18%), Positives = 18/65 (27%)
Query: 203 TKQFFLQFSFRNESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNM 262
T++ + R + S PP S ++ P PP PP G
Sbjct: 137 TRRCVGRRDLRPANTTSTWEPPVSSDDEASSQSKPLATQPPVLALSNAPPRRVSPTRGRR 196
Query: 263 PPPPP 267
Sbjct: 197 RHTRL 201
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.137 0.443
Gapped
Lambda K H
0.267 0.0689 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,967,668
Number of extensions: 316867
Number of successful extensions: 4561
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3060
Number of HSP's successfully gapped: 461
Length of query: 286
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 193
Effective length of database: 4,105,140
Effective search space: 792292020
Effective search space used: 792292020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (25.8 bits)