RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1344
         (286 letters)



>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 67

 Score = 32.4 bits (74), Expect = 0.008
 Identities = 10/56 (17%), Positives = 18/56 (32%), Gaps = 5/56 (8%)

Query: 39 DLNKDPYFMKNHLGSYECKLCLTLHNNEGSYLAHTQGKKHQANLARRAAKEAKDAP 94
          D N +        G + C  C     +  +   H + K H     ++  K+    P
Sbjct: 1  DPNAEFDPDLPGGGLHRCLACARYFIDSTNLKTHFRSKDH-----KKRLKQLSVEP 51


>d1zu1a2 g.37.1.4 (A:74-128) dsRNA-binding protein ZFa (ZNF346,
          JAZ) {African clawed frog (Xenopus laevis) [TaxId:
          8355]}
          Length = 55

 Score = 29.9 bits (67), Expect = 0.041
 Identities = 9/30 (30%), Positives = 13/30 (43%)

Query: 56 CKLCLTLHNNEGSYLAHTQGKKHQANLARR 85
          C +C    ++     +H  GK H  NL  R
Sbjct: 24 CPVCNMTFSSPVVAESHYIGKTHIKNLRLR 53


>d1zu1a1 g.37.1.4 (A:2-73) dsRNA-binding protein ZFa (ZNF346, JAZ)
          {African clawed frog (Xenopus laevis) [TaxId: 8355]}
          Length = 72

 Score = 29.6 bits (66), Expect = 0.083
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 56 CKLCLTLHNNEGSYLAHTQGKKHQANLAR 84
          CK+C  +  +E   LAH Q +KH   + R
Sbjct: 35 CKVCSAVLISESQKLAHYQSRKHANKVRR 63


>d2dk4a1 a.140.6.1 (A:8-70) Pre-mRNA-splicing factor 18 {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 63

 Score = 27.1 bits (60), Expect = 0.45
 Identities = 8/22 (36%), Positives = 16/22 (72%)

Query: 21 ESNRDRRERLRQLALETIDLNK 42
          E++ D  +RLR++ + T ++NK
Sbjct: 41 ETDYDAFQRLRKIEILTPEVNK 62


>d1jvra_ a.61.1.2 (A:) HTLV-II matrix protein {Human T-cell leukemia
           virus type 2 [TaxId: 11909]}
          Length = 137

 Score = 28.3 bits (63), Expect = 0.58
 Identities = 14/45 (31%), Positives = 17/45 (37%), Gaps = 1/45 (2%)

Query: 213 RNESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPG 257
           +N+  PS    P P   I     PPP  PP P   +  P   P  
Sbjct: 90  KNQVSPSAPAAPVP-TPICPTTTPPPPPPPSPEAHVPPPYVEPTT 133



 Score = 27.9 bits (62), Expect = 0.86
 Identities = 13/43 (30%), Positives = 18/43 (41%)

Query: 214 NESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPP 256
            +++ S   P +P P        PP  PPP P   + PP   P
Sbjct: 89  VKNQVSPSAPAAPVPTPICPTTTPPPPPPPSPEAHVPPPYVEP 131



 Score = 27.5 bits (61), Expect = 0.92
 Identities = 13/31 (41%), Positives = 16/31 (51%)

Query: 235 PPPPMLPPPPPPQMMGPPPPPPGLFGNMPPP 265
            P   +P P  P    PPPPPP    ++PPP
Sbjct: 97  APAAPVPTPICPTTTPPPPPPPSPEAHVPPP 127


>d2vrda1 g.37.1.4 (A:1-61) Spliceosomal protein U1C {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 61

 Score = 25.1 bits (55), Expect = 2.0
 Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 4/46 (8%)

Query: 54 YECKLC---LTLHNNEGSYLAHTQGKKHQANLARRAAKEAKDAPQQ 96
          + C  C   LT H++      H  G+KH+ N+     K  ++  Q 
Sbjct: 4  FYCDYCDTYLT-HDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQS 48


>d1g9la_ a.144.1.1 (A:) poly(A) binding protein {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 144

 Score = 26.4 bits (58), Expect = 2.9
 Identities = 14/66 (21%), Positives = 19/66 (28%), Gaps = 5/66 (7%)

Query: 220 FRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMP 279
                + +PA+R             P Q +   P        M  P  H+ G  P  A  
Sbjct: 3   LGSAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVT-----MQQPAVHVQGQEPLTASM 57

Query: 280 PPPPPP 285
               PP
Sbjct: 58  LASAPP 63


>d1uk5a_ a.7.7.1 (A:) BAG-family molecular chaperone regulator-3
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 111

 Score = 25.2 bits (55), Expect = 4.8
 Identities = 4/23 (17%), Positives = 5/23 (21%)

Query: 233 NLPPPPMLPPPPPPQMMGPPPPP 255
           +  P     P        P  P 
Sbjct: 6   SGAPAEPAAPKSGEAETPPKHPG 28


>d3c8ya1 c.96.1.1 (A:210-574) Fe-only hydrogenase, catalytic domain
           {Clostridium pasteurianum [TaxId: 1501]}
          Length = 365

 Score = 26.1 bits (57), Expect = 5.5
 Identities = 8/39 (20%), Positives = 16/39 (41%), Gaps = 2/39 (5%)

Query: 7   PGGKTGGGGVASWSESNRDRRE--RLRQLALETIDLNKD 43
            GG   GGG    +  + ++ +  ++R   L   D +  
Sbjct: 291 HGGCVNGGGQPHVNPKDLEKVDIKKVRASVLYNQDEHLS 329


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.137    0.443 

Gapped
Lambda     K      H
   0.267   0.0557    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,230,525
Number of extensions: 65386
Number of successful extensions: 358
Number of sequences better than 10.0: 1
Number of HSP's gapped: 301
Number of HSP's successfully gapped: 39
Length of query: 286
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 202
Effective length of database: 1,254,276
Effective search space: 253363752
Effective search space used: 253363752
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.2 bits)