BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13443
(188 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 63.9 bits (154), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 64/157 (40%), Gaps = 13/157 (8%)
Query: 1 MLRHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVN-FVCVHC-KQFEVVPTRKT 58
+ H RTH ++ ++C C D+ H Q+ H G + C C K F +
Sbjct: 37 LAEHQRTHTGEKPYKCPECGKSFSDKKDLTRH-QRTHTGEKPYKCPECGKSFSQRANLRA 95
Query: 59 QTLEHCATCVDMVRPDASYTYMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARR 118
H Y C C ++R H TH GEKP++C C S R
Sbjct: 96 HQRTH----------TGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSR 145
Query: 119 KTHLDDHMRRHTGEKPHACGMCGYECAQGSQLMQHLR 155
+ +L H R HTGEKP+ C CG ++ L H R
Sbjct: 146 EDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQR 182
Score = 56.6 bits (135), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 37/77 (48%)
Query: 79 YMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACG 138
Y C C ++ H TH GEKP++C C S K L H R HTGEKP+ C
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCP 81
Query: 139 MCGYECAQGSQLMQHLR 155
CG +Q + L H R
Sbjct: 82 ECGKSFSQRANLRAHQR 98
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 57/135 (42%), Gaps = 13/135 (9%)
Query: 1 MLRHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVN-FVCVHC-KQFEVVPTRKT 58
+ RH RTH ++ ++C C Q A++ H Q+ H G + C C K F + +
Sbjct: 65 LTRHQRTHTGEKPYKCPECGKSFSQRANLRAH-QRTHTGEKPYACPECGKSFSQLAHLRA 123
Query: 59 QTLEHCATCVDMVRPDASYTYMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARR 118
H Y C C + TH TH GEKP++C C S R
Sbjct: 124 HQRTH----------TGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSR 173
Query: 119 KTHLDDHMRRHTGEK 133
+ L+ H R HTG+K
Sbjct: 174 RDALNVHQRTHTGKK 188
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 29/53 (54%)
Query: 103 GEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMCGYECAQGSQLMQHLR 155
GEKP+ C C S R HL +H R HTGEKP+ C CG + L +H R
Sbjct: 18 GEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQR 70
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 47/82 (57%), Gaps = 6/82 (7%)
Query: 82 YLCNYHTPTRKYMRT-----HIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHA 136
Y C + R++ R+ HI H G+KPF+C +C + R HL H+R HTGEKP A
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 137 CGMCGYECAQGSQLMQHLRKVH 158
C +CG + A+ + +H K+H
Sbjct: 65 CDICGRKFARSDERKRHT-KIH 85
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 79 YMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALC----AYSARRKTHLDDHMR 127
+ C +C + ++ THI TH GEKPF C +C A S RK H H+R
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLR 87
Score = 26.6 bits (57), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 1 MLRHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVN-FVCVHC-KQFEVVPTRKT 58
+ RH+R H ++ F+C C ++ + H+ + H G F C C ++F RK
Sbjct: 22 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI-RTHTGEKPFACDICGRKFARSDERKR 80
Query: 59 QTLEH 63
T H
Sbjct: 81 HTKIH 85
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
Length = 90
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 47/82 (57%), Gaps = 6/82 (7%)
Query: 82 YLCNYHTPTRKYMRT-----HIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHA 136
Y C + R++ R+ HI H G+KPF+C +C + R HL H+R HTGEKP A
Sbjct: 5 YACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 137 CGMCGYECAQGSQLMQHLRKVH 158
C +CG + A+ + +H K+H
Sbjct: 65 CDICGRKFARSDERKRHT-KIH 85
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 79 YMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALC----AYSARRKTHLDDHMR 127
+ C +C + ++ THI TH GEKPF C +C A S RK H H+R
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLR 87
Score = 26.6 bits (57), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 1 MLRHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVN-FVCVHC-KQFEVVPTRKT 58
+ RH+R H ++ F+C C ++ + H+ + H G F C C ++F RK
Sbjct: 22 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI-RTHTGEKPFACDICGRKFARSDERKR 80
Query: 59 QTLEH 63
T H
Sbjct: 81 HTKIH 85
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
Length = 87
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 47/82 (57%), Gaps = 6/82 (7%)
Query: 82 YLCNYHTPTRKYMRT-----HIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHA 136
Y C + R++ R+ HI H G+KPF+C +C + R HL H+R HTGEKP A
Sbjct: 4 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 63
Query: 137 CGMCGYECAQGSQLMQHLRKVH 158
C +CG + A+ + +H K+H
Sbjct: 64 CDICGRKFARSDERKRHT-KIH 84
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 79 YMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALC----AYSARRKTHLDDHMR 127
+ C +C + ++ THI TH GEKPF C +C A S RK H H+R
Sbjct: 34 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLR 86
Score = 26.6 bits (57), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 1 MLRHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVN-FVCVHC-KQFEVVPTRKT 58
+ RH+R H ++ F+C C ++ + H+ + H G F C C ++F RK
Sbjct: 21 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI-RTHTGEKPFACDICGRKFARSDERKR 79
Query: 59 QTLEH 63
T H
Sbjct: 80 HTKIH 84
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 47/82 (57%), Gaps = 6/82 (7%)
Query: 82 YLCNYHTPTRKYMRT-----HIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHA 136
Y C + R++ R+ HI H G+KPF+C +C + R HL H+R HTGEKP A
Sbjct: 5 YACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 137 CGMCGYECAQGSQLMQHLRKVH 158
C +CG + A+ + +H K+H
Sbjct: 65 CDICGRKFARSDERKRHT-KIH 85
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 79 YMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALC----AYSARRKTHLDDHMR 127
+ C +C + ++ THI TH GEKPF C +C A S RK H H+R
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLR 87
Score = 26.6 bits (57), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 1 MLRHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVN-FVCVHC-KQFEVVPTRKT 58
+ RH+R H ++ F+C C ++ + H+ + H G F C C ++F RK
Sbjct: 22 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI-RTHTGEKPFACDICGRKFARSDERKR 80
Query: 59 QTLEH 63
T H
Sbjct: 81 HTKIH 85
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 47/82 (57%), Gaps = 6/82 (7%)
Query: 82 YLCNYHTPTRKYMRT-----HIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHA 136
Y C + R++ R+ HI H G+KPF+C +C + R HL H+R HTGEKP A
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 137 CGMCGYECAQGSQLMQHLRKVH 158
C +CG + A+ + +H K+H
Sbjct: 65 CDICGRKFARSDERKRHT-KIH 85
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 79 YMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALC----AYSARRKTHLDDHMR 127
+ C +C + ++ THI TH GEKPF C +C A S RK H H+R
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLR 87
Score = 26.6 bits (57), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 1 MLRHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVHC-KQFEVVPTRKTQ 59
+ RH+R H ++ F+C C ++ + H++ F C C ++F RK
Sbjct: 22 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 81
Query: 60 TLEH 63
T H
Sbjct: 82 TKIH 85
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 6/82 (7%)
Query: 82 YLCNYHTPTRKYMRT-----HIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHA 136
Y C + R++ ++ HI H G+KPF+C +C + R HL H+R HTGEKP A
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 137 CGMCGYECAQGSQLMQHLRKVH 158
C +CG + A+ + +H K+H
Sbjct: 65 CDICGRKFARSDERKRHT-KIH 85
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 79 YMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALC----AYSARRKTHLDDHMR 127
+ C +C + ++ THI TH GEKPF C +C A S RK H H+R
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLR 87
Score = 26.6 bits (57), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 1 MLRHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVN-FVCVHC-KQFEVVPTRKT 58
+ RH+R H ++ F+C C ++ + H+ + H G F C C ++F RK
Sbjct: 22 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI-RTHTGEKPFACDICGRKFARSDERKR 80
Query: 59 QTLEH 63
T H
Sbjct: 81 HTKIH 85
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
Length = 90
Score = 59.7 bits (143), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 97 HIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMCGYECAQGSQLMQHLRK 156
HI H G+KPF+C +C + R HL H+R HTGEKP AC +CG + A+ + +H K
Sbjct: 25 HIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHT-K 83
Query: 157 VH 158
+H
Sbjct: 84 IH 85
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 79 YMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALC----AYSARRKTHLDDHMR 127
+ C +C + ++ THI TH GEKPF C +C A S RK H H+R
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLR 87
Score = 26.6 bits (57), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 1 MLRHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVN-FVCVHC-KQFEVVPTRKT 58
+ RH+R H ++ F+C C ++ + H+ + H G F C C ++F RK
Sbjct: 22 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI-RTHTGEKPFACDICGRKFARSDERKR 80
Query: 59 QTLEH 63
T H
Sbjct: 81 HTKIH 85
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%)
Query: 75 ASYTYMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKP 134
+S + C +C + ++TH+ H G KP++C C Y+A + L+ H+R H+ E+P
Sbjct: 5 SSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERP 64
Query: 135 HACGMCGYECAQGSQLMQHLR 155
C +C Y SQL HLR
Sbjct: 65 FKCQICPYASRNSSQLTVHLR 85
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 33/60 (55%)
Query: 79 YMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACG 138
Y C C+Y + H+ H+ E+PF+C +C Y++R + L H+R HTG+ + G
Sbjct: 37 YKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSHTGDSGPSSG 96
Score = 29.6 bits (65), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 9/35 (25%), Positives = 22/35 (62%)
Query: 1 MLRHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQ 35
+ +H+R H ++ F+C CPY ++ ++ + H++
Sbjct: 52 LNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRS 86
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 56.6 bits (135), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 38/77 (49%)
Query: 79 YMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACG 138
Y C C ++ H TH GEKP++C C S + + L H R HTGEKP+ C
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCP 64
Query: 139 MCGYECAQGSQLMQHLR 155
CG ++ L +H R
Sbjct: 65 ECGKSFSRSDHLSRHQR 81
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 31/52 (59%)
Query: 104 EKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMCGYECAQGSQLMQHLR 155
EKP++C C S + ++L H R HTGEKP+ C CG +Q S L +H R
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQR 53
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 25/55 (45%)
Query: 79 YMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEK 133
Y C C ++ H TH GEKP++C C S R HL H R H +K
Sbjct: 33 YKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 1 MLRHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVN-FVCVHC 47
+ +H RTH ++ ++C C Q++D+ H Q+ H G + C C
Sbjct: 20 LQKHQRTHTGEKPYKCPECGKSFSQSSDLQKH-QRTHTGEKPYKCPEC 66
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
Length = 90
Score = 56.6 bits (135), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 38/62 (61%)
Query: 84 CNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMCGYE 143
C+ + + THI H G+KPF+C +C + + T L+ H+R HTGEKP AC +CG +
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRK 71
Query: 144 CA 145
A
Sbjct: 72 FA 73
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 104 EKPFRCAL--CAYSARRKTHLDDHMRRHTGEKPHACGMCGYECAQGSQLMQHLR 155
E+P+ C + C +KT+LD H+R HTG+KP C +C +Q + L QH+R
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIR 55
Score = 31.6 bits (70), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 79 YMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCA 113
+ C +C + + HI TH GEKPF C +C
Sbjct: 35 FQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICG 69
Score = 26.6 bits (57), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 4 HVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVHC-KQFEVVPTRKTQTLE 62
H+R H ++ F+C C Q ++ H++ F C C ++F + TR T
Sbjct: 25 HIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRKFATLHTRDRHTKI 84
Query: 63 H 63
H
Sbjct: 85 H 85
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 44/78 (56%), Gaps = 7/78 (8%)
Query: 70 MVRPDASYTYMCYL--CNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKTHLDDHMR 127
M RP Y C + C+ + + THI H G+KPF+C +C + ++ L+ H+R
Sbjct: 1 MERP-----YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIR 55
Query: 128 RHTGEKPHACGMCGYECA 145
HTGEKP AC +CG + A
Sbjct: 56 THTGEKPFACDICGRKFA 73
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 4 HVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVN-FVCVHC-KQFEVVPTRKTQTL 61
H+R H ++ F+C C Q A ++ H+ + H G F C C ++F + TR T
Sbjct: 25 HIRIHTGQKPFQCRICMRNFSQQASLNAHI-RTHTGEKPFACDICGRKFATLHTRTRHTK 83
Query: 62 EH 63
H
Sbjct: 84 IH 85
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 40/79 (50%)
Query: 78 TYMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHAC 137
++ C +C + TH+ H+ +P+ C C +K+ + H HTGEKPH C
Sbjct: 1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKC 60
Query: 138 GMCGYECAQGSQLMQHLRK 156
+CG +Q S L+ H RK
Sbjct: 61 QVCGKAFSQSSNLITHSRK 79
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 41/92 (44%), Gaps = 11/92 (11%)
Query: 41 NFVCVHC-KQFEVVPTRKTQTLEHCATCVDMVRPDASYTYMCYLCNYHTPTRKYMRTHID 99
+F C C K F+ T T L H T RP Y C C + M+ H
Sbjct: 1 SFDCKICGKSFKRSSTLSTHLLIHSDT-----RP-----YPCQYCGKRFHQKSDMKKHTF 50
Query: 100 THNGEKPFRCALCAYSARRKTHLDDHMRRHTG 131
H GEKP +C +C + + ++L H R+HTG
Sbjct: 51 IHTGEKPHKCQVCGKAFSQSSNLITHSRKHTG 82
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 93 YMRTHIDTHNGEKPFRCAL--CAYSARRKTHLDDHMRRHTGEKPHACGMCGYECAQGSQL 150
+++ H+ TH GEKP++C C + R L H R+HTG KP CG+C ++ L
Sbjct: 32 HLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHL 91
Query: 151 MQHLRK 156
H+++
Sbjct: 92 ALHMKR 97
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%)
Query: 84 CNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKTHLDDHMRRH 129
C++ + H H G KPF+C +C S R HL HM+RH
Sbjct: 53 CDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRH 98
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 105 KPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMCGYECAQGSQLMQH 153
KPF+C +C + R HL H+R HTGEKP AC +CG + A+ + +H
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 79 YMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALC----AYSARRKTHLD 123
+ C +C + ++ THI TH GEKPF C +C A S RK H D
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRD 52
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 35/75 (46%)
Query: 79 YMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACG 138
++C C H + H TH E+P+ C +C + RR+ HL DH H+ EKP C
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQ 77
Query: 139 MCGYECAQGSQLMQH 153
CG Q L H
Sbjct: 78 ECGKGFCQSRTLAVH 92
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 104 EKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMCGYECAQGSQLMQHLRKVHKVDK 162
+K F C C + +L H R HT E+P+ C +C + L H R +H +K
Sbjct: 15 KKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDH-RYIHSKEK 72
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
Query: 74 DASYTYMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGE- 132
S C +C ++ H +H+GEKP+ C +C +RK + H+R H G
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV 62
Query: 133 -KPHACGMCGYECAQGSQLMQHLRKVHKVDKKG 164
KP+ C CG ++ L H+++VH G
Sbjct: 63 GKPYICQSCGKGFSRPDHLNGHIKQVHSGPSSG 95
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 7/79 (8%)
Query: 82 YLCNYHTPTRKYMRT-----HIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHA 136
Y C++ R++ R+ H H G KPF+C C R HL H R HTGEKP +
Sbjct: 37 YQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFS 96
Query: 137 CGM--CGYECAQGSQLMQH 153
C C + A+ +L++H
Sbjct: 97 CRWPSCQKKFARSDELVRH 115
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 7/81 (8%)
Query: 82 YLCNYHTPTRKY-----MRTHIDTHNGEKPFRCAL--CAYSARRKTHLDDHMRRHTGEKP 134
++C Y ++Y ++ H H GEKP++C C R L H RRHTG KP
Sbjct: 7 FMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKP 66
Query: 135 HACGMCGYECAQGSQLMQHLR 155
C C + ++ L H R
Sbjct: 67 FQCKTCQRKFSRSDHLKTHTR 87
Score = 29.6 bits (65), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 79 YMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKTHLDDHMRRH 129
+ C C +++TH TH GEKPF C S ++K D + RH
Sbjct: 67 FQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRW--PSCQKKFARSDELVRH 115
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 30/57 (52%)
Query: 103 GEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMCGYECAQGSQLMQHLRKVHK 159
G C+ C R +L+ H+R HTGEKP+ C C Y AQ + L HL + HK
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHHK 57
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%)
Query: 81 CYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKTHLDDHMRRH 129
C C + Y+ H+ TH GEKP++C C Y+A +KT L H+ RH
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 33.9 bits (76), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 4 HVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIH 37
H+RTH ++ ++C+FC Y A Q + H+++ H
Sbjct: 23 HLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH 56
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Zinc Finger Protein 24
Length = 72
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 29/52 (55%)
Query: 104 EKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMCGYECAQGSQLMQHLR 155
EKP+ C C + R + L H R HTGEKP+ C CG +Q S L+ H R
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQR 63
Score = 34.3 bits (77), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 23/52 (44%)
Query: 79 YMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHT 130
Y C C + H H GEKP++C C + + + L +H R HT
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 44/122 (36%), Gaps = 31/122 (25%)
Query: 74 DASYTYMCYLCNYHTPTRKYMRTHIDTHNGEKPFRC------------------------ 109
S C C+ ++ Y++ H H GEKPF C
Sbjct: 3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNR 62
Query: 110 -------ALCAYSARRKTHLDDHMRRHTGEKPHACGMCGYECAQGSQLMQHLRKVHKVDK 162
++C + RR+ L HM HTGE P+ C C + Q L H+ K+H
Sbjct: 63 SEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPS 122
Query: 163 KG 164
G
Sbjct: 123 SG 124
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Query: 56 RKTQTLEHCA-TCVDMVRPDASYTYMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCAY 114
RK LEH A C++ + + C +C R +R H+ +H GE P++C+ C+
Sbjct: 47 RKENLLEHEARNCMN----RSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQ 102
Query: 115 SARRKTHLDDHM-RRHTG 131
+K L HM + H+G
Sbjct: 103 QFMQKKDLQSHMIKLHSG 120
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 107 FRCALCAYSARRKTHLDDHMRRHTGEKPHACGMCGYECAQGSQLMQHLRKVH 158
F C +C + R+ HL H R HT EKP+ CG+C + L++H +K+H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 32.3 bits (72), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 78 TYMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKTHLDDHMRR-HTG 131
+++C +C +++++ H +H EKP+ C LC + R+ L H ++ H+G
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 104 EKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMCGYECAQGSQLMQHLRKVHKVDK 162
+KP++C C S R K +L H HTGEKP+ C +CG + + + L H R +H +K
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTR-IHSGEK 72
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 28/56 (50%)
Query: 79 YMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKP 134
Y C C + + +H H GEKP+RC +C R +L H R H+GEKP
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 89
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 93 YMRTHIDTHNGEKPFRCAL--CAYSARRKTHLDDHMRRHTGEKPHACGMCGYECAQGSQL 150
+++ H+ TH GEKP+ C C + R L H R+HTG +P C C ++ L
Sbjct: 22 HLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHL 81
Query: 151 MQHLRK 156
H+++
Sbjct: 82 ALHMKR 87
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query: 110 ALCAYSARRKTHLDDHMRRHTGEKPHACGM--CGYECAQGSQLMQHLRK 156
A C + + +HL H+R HTGEKP+ C CG++ A+ +L +H RK
Sbjct: 11 AGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRK 59
Score = 32.0 bits (71), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 82 YLCNYHTPTRKYMRT-----HIDTHNGEKPFRCALCAYSARRKTHLDDHMRRH 129
Y C++ K+ R+ H H G +PF+C C + R HL HM+RH
Sbjct: 36 YHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 90
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 93 YMRTHIDTHNGEKPFRCAL--CAYSARRKTHLDDHMRRHTGEKPHACGMCGYECAQGSQL 150
+++ H+ TH GEKP+ C C + R L H R+HTG +P C C ++ L
Sbjct: 23 HLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHL 82
Query: 151 MQHLRK 156
H+++
Sbjct: 83 ALHMKR 88
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query: 110 ALCAYSARRKTHLDDHMRRHTGEKPHACGM--CGYECAQGSQLMQHLRK 156
A C + + +HL H+R HTGEKP+ C CG++ A+ +L +H RK
Sbjct: 12 AGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRK 60
Score = 32.0 bits (71), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 82 YLCNYHTPTRKYMRT-----HIDTHNGEKPFRCALCAYSARRKTHLDDHMRRH 129
Y C++ K+ R+ H H G +PF+C C + R HL HM+RH
Sbjct: 37 YHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 89
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Query: 94 MRTHIDTHNGEKPFRCAL--CAYSARRKTHLDDHMRRHTGEKPHACGM--CGYECAQGSQ 149
+ HI H GEKPF C C R +L H R HTGEKP C C A S
Sbjct: 78 LVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSD 137
Query: 150 LMQHLRKVHKVDKKG 164
+H+ VH DK G
Sbjct: 138 RKKHMH-VHTSDKSG 151
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 109 CALCAYSARRKTHLDDHMRRHTGEKPHACGM--CGYECAQGSQLMQHLR 155
C S + K L +H+R HTGEKP C CG A+ L H R
Sbjct: 65 CPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKR 113
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
Of Human Zinc Finger Protein 297b
Length = 110
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%)
Query: 97 HIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMC 140
H+ H G +P+ C +C + K HL HM+ HTG KP+ C +C
Sbjct: 28 HMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNIC 71
Score = 34.7 bits (78), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 102 NGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMCGYECAQGSQLMQHLR 155
+G+K + C C S K+ D HM H G +P+ CG+CG + L+ H++
Sbjct: 6 SGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMK 58
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 79 YMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCA 113
Y C +C + ++ H+ H G KP+ C +CA
Sbjct: 38 YGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICA 72
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 97 HIDTHNGEKPFRCAL--CAYSARRKTHLDDHMRRHTGEKPHAC--GMCGYECAQGSQLMQ 152
H+ H GEKP +C C S R +L H+R HTGEKP+ C C + S +
Sbjct: 58 HMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAK 117
Query: 153 HLRKVHKVDK 162
H + H +K
Sbjct: 118 HQNRTHSNEK 127
Score = 35.8 bits (81), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 94 MRTHIDTHNGEKPFRC--ALCAYSARRKTHLDDHMRR-HTGEKPHACGM--CGYECAQGS 148
++TH+ +H GEKP+ C C+ + + H R H+ EKP+ C + C S
Sbjct: 85 LKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPS 144
Query: 149 QLMQHLRKVH 158
L +H++ VH
Sbjct: 145 SLRKHVKTVH 154
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 36/91 (39%)
Query: 74 DASYTYMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEK 133
D Y+C +C +R H + H+ EK + C C + H HTGE+
Sbjct: 18 DGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGER 77
Query: 134 PHACGMCGYECAQGSQLMQHLRKVHKVDKKG 164
+ C CG + H++ VH D G
Sbjct: 78 RYQCLACGKSFINYQFMSSHIKSVHSQDPSG 108
>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
369- 401) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 20/33 (60%)
Query: 104 EKPFRCALCAYSARRKTHLDDHMRRHTGEKPHA 136
EKPF+C C S ++ HL H R HTGEKP
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSG 42
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Query: 78 TYMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCAL--CAYSARRKTHLDDHMRRHTGEKPH 135
++C C ++ H H GEKPF+C C +L H+R HTG++P+
Sbjct: 34 VHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPY 93
Query: 136 ACGM--CGYECAQGSQLMQHL 154
C C + AQ + L H+
Sbjct: 94 VCPFDGCNKKFAQSTNLKSHI 114
Score = 33.9 bits (76), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Query: 94 MRTHIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGM--CGYECAQGSQLM 151
MR H+ TH G + CA C + + L H HTGEKP C CG + L
Sbjct: 23 MRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLR 81
Query: 152 QHLRKVHKVDK 162
H+R +H D+
Sbjct: 82 THVR-IHTGDR 91
>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
693- 723) Of Human Zinc Finger Protein 268
Length = 44
Score = 40.0 bits (92), Expect = 7e-04, Method: Composition-based stats.
Identities = 17/33 (51%), Positives = 23/33 (69%)
Query: 102 NGEKPFRCALCAYSARRKTHLDDHMRRHTGEKP 134
+G KP+ C+ C + R K++L HMR HTGEKP
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 27.3 bits (59), Expect = 4.9, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 79 YMCYLCNYHTPTRKYMRTHIDTHNGEKP 106
Y C C ++ Y+ H+ TH GEKP
Sbjct: 11 YGCSECGKAFRSKSYLIIHMRTHTGEKP 38
>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
584- 616) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 39.3 bits (90), Expect = 0.001, Method: Composition-based stats.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 104 EKPFRCALCAYSARRKTHLDDHMRRHTGEKP 134
EKPF+C C + R+ HL H+R HTGEKP
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEKP 40
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 39.3 bits (90), Expect = 0.001, Method: Composition-based stats.
Identities = 17/32 (53%), Positives = 21/32 (65%)
Query: 103 GEKPFRCALCAYSARRKTHLDDHMRRHTGEKP 134
EKPFRC C S R+++ L+ H HTGEKP
Sbjct: 9 AEKPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
>pdb|2ELQ|A Chain A, Solution Structure Of The 14th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 39.3 bits (90), Expect = 0.001, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 22/29 (75%)
Query: 105 KPFRCALCAYSARRKTHLDDHMRRHTGEK 133
KPF+C+LC Y+ R K++L HM RH+ EK
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHMNRHSTEK 36
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain
Of Zinc Finger Protein 435
Length = 77
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 28/58 (48%)
Query: 79 YMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHA 136
Y C C + H TH GEKP++C C + +++HL H R HTG P +
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSS 76
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 25/49 (51%)
Query: 107 FRCALCAYSARRKTHLDDHMRRHTGEKPHACGMCGYECAQGSQLMQHLR 155
++C C S + L H R HTGEKP+ C CG Q S L+ H R
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHR 67
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
Length = 73
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Query: 82 YLCNYHTPTRKYMRT-----HIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHT 130
Y C + R++ R+ HI H G+KPF+C +C + R HL H+R HT
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 34.3 bits (77), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 105 KPFRCAL--CAYSARRKTHLDDHMRRHTGEKPHACGMCGYECAQGSQLMQHLR 155
+P+ C + C R L H+R HTG+KP C +C ++ L H+R
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 70
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 104 EKPFRCALCAYSARRKTHLDDHMRRHTGEKP 134
EKP+ C +C+ + +K HL H + HTGEKP
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 104 EKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMCGYECAQGSQLMQHLRKVHK 159
E+PF C C + R + L H R H G +P +C CG S++ +HL KVH+
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHL-KVHQ 56
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 104 EKPFRCALCAYSARRKTHLDDHMRRHTGEKPHA 136
EKP+RC C + +K +L H R HTGEKP
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKPSG 42
Score = 30.0 bits (66), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 132 EKPHACGMCGYECAQGSQLMQHLRKVHKVDKKGG 165
EKP+ CG CG AQ + L QH R +H +K G
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQR-IHTGEKPSG 42
>pdb|2ELT|A Chain A, Solution Structure Of The 3rd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 37.0 bits (84), Expect = 0.007, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 23/29 (79%)
Query: 105 KPFRCALCAYSARRKTHLDDHMRRHTGEK 133
KP++C C+Y++ K +L+ H+R+HTGEK
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHTGEK 36
>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
668- 700) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 104 EKPFRCALCAYSARRKTHLDDHMRRHTGEKP 134
EKP+ C C + + THL H R HTGEKP
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 132 EKPHACGMCGYECAQGSQLMQHLRKVHKVDKKGG 165
EKP+ C CG +Q + L+QH R VH +K G
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQR-VHTGEKPSG 42
>pdb|2YTD|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
426- 458) Of Human Zinc Finger Protein 473
Length = 46
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 104 EKPFRCALCAYSARRKTHLDDHMRRHTGEKP 134
EKP++C+ C + R THL++H R HTG +P
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 104 EKPFRCALCAYSARRKTHLDDHMRRHTGEKP 134
EKPF+C C + +HL H R HTGEKP
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
612- 644) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 35.8 bits (81), Expect = 0.014, Method: Composition-based stats.
Identities = 17/31 (54%), Positives = 18/31 (58%)
Query: 104 EKPFRCALCAYSARRKTHLDDHMRRHTGEKP 134
EKPF CA C S + L H R HTGEKP
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGEKP 40
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 35.8 bits (81), Expect = 0.015, Method: Composition-based stats.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 104 EKPFRCALCAYSARRKTHLDDHMRRHTGEKP 134
EKP+ C C S +K+HL+ H R HTGEKP
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
775- 807) Of Human Zinc Finger Protein 268
Length = 46
Score = 35.8 bits (81), Expect = 0.016, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 104 EKPFRCALCAYSARRKTHLDDHMRRHTGEKP 134
EKP+ C+ C + K++L HMR H+GEKP
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 27.3 bits (59), Expect = 5.4, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 79 YMCYLCNYHTPTRKYMRTHIDTHNGEKP 106
Y C C ++ Y+ H+ TH+GEKP
Sbjct: 13 YGCSECGKAFSSKSYLIIHMRTHSGEKP 40
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 35.4 bits (80), Expect = 0.021, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 104 EKPFRCALCAYSARRKTHLDDHMRRHTGEKP 134
EKP++C C + +HL +H R HTGEKP
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 35.0 bits (79), Expect = 0.025, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 104 EKPFRCALCAYSARRKTHLDDHMRRHTGEKP 134
EKPF+C C R++ L+ H + HTGEKP
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLHTGEKP 40
>pdb|2EM8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
423- 455) Of Human Zinc Finger Protein 224
Length = 46
Score = 35.0 bits (79), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 104 EKPFRCALCAYSARRKTHLDDHMRRHTGEK 133
EKP++C C +R+ LD H R HTGEK
Sbjct: 10 EKPYKCVECGKGYKRRLDLDFHQRVHTGEK 39
>pdb|2EQ0|A Chain A, Solution Structure Of The 8th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 35.0 bits (79), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 104 EKPFRCALCAYSARRKTHLDDHMRRHTGEKP 134
EKP++C C RR +HL H HTGEKP
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIHTGEKP 40
>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
528- 560) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 34.7 bits (78), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 104 EKPFRCALCAYSARRKTHLDDHMRRHTGEKPHA 136
EKP++C +C S R + L H R HTGEKP
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSG 42
>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
607- 639) Of Human Zinc Finger Protein 268
Length = 46
Score = 34.7 bits (78), Expect = 0.032, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 104 EKPFRCALCAYSARRKTHLDDHMRRHTGEKP 134
EKPF C+ C + K++L H R HTGEKP
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
603- 635) Of Human Zinc Finger Protein 484
Length = 46
Score = 34.7 bits (78), Expect = 0.032, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 104 EKPFRCALCAYSARRKTHLDDHMRRHTGEKP 134
EKP+ C++C S +K+ L H + HTGEKP
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domains
From Human Krueppel-Like Factor 10
Length = 72
Score = 34.7 bits (78), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 10/64 (15%)
Query: 94 MRTHIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMCGYE--CAQGSQLM 151
+R+HI +H G C + + +HL H R HTGEKP +C G E A+ +L
Sbjct: 15 IRSHICSHPG--------CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELS 66
Query: 152 QHLR 155
+H R
Sbjct: 67 RHRR 70
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 93 YMRTHIDTHNGEKPFRCAL--CAYSARRKTHLDDHMRRH 129
+++ H TH GEKPF C+ C R L H R H
Sbjct: 34 HLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 34.7 bits (78), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 104 EKPFRCALCAYSARRKTHLDDHMRRHTGEKPHA 136
EKPF+C C + + L H R HTGEKP
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSG 42
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
631- 663) Of Human Zinc Finger Protein 484
Length = 46
Score = 34.3 bits (77), Expect = 0.038, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 104 EKPFRCALCAYSARRKTHLDDHMRRHTGEKP 134
EKP+RCA C + +++L H + HTGEKP
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double Cys2His2
Zinc Finger From The Human Enhancer Binding Protein
Mbp-1
Length = 57
Score = 34.3 bits (77), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 24/49 (48%)
Query: 79 YMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKTHLDDHMR 127
Y+C C ++ HI TH +P+ C C +S + K +L HM+
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 31.2 bits (69), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 12/49 (24%), Positives = 23/49 (46%)
Query: 107 FRCALCAYSARRKTHLDDHMRRHTGEKPHACGMCGYECAQGSQLMQHLR 155
+ C C ++ + L H+R HT +P+ C C + L +H++
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
>pdb|2EQW|A Chain A, Solution Structure Of The 6th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 484
Length = 42
Score = 34.3 bits (77), Expect = 0.042, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 102 NGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACG 138
+GEKP+ C C + RK+H H R HTGE + G
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIHTGESGPSSG 42
>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
507- 539) Of Human Zinc Finger Protein 224
Length = 46
Score = 34.3 bits (77), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 104 EKPFRCALCAYSARRKTHLDDHMRRHTGEKPHA 136
EKP++C C K +LD H + HTGE+P
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSG 42
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 34.3 bits (77), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 4/71 (5%)
Query: 94 MRTHIDTHNGEKPFRCAL--CAYSARRKTHLDDHMRRHTGEKPHACGM--CGYECAQGSQ 149
++ H+ H GEKPF C C HL H HTGEK C C +
Sbjct: 21 LQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKAN 80
Query: 150 LMQHLRKVHKV 160
+ +H + H +
Sbjct: 81 MKKHFNRFHNI 91
Score = 29.6 bits (65), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 110 ALCAYSARRKTHLDDHMRRHTGEKPHACGMCGYECAQGSQLMQHLRK 156
A C + + L H+ +HTGEKP C G C +G + HL +
Sbjct: 9 ADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEG--CEKGFTSLHHLTR 53
>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
397- 429) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 33.9 bits (76), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 104 EKPFRCALCAYSARRKTHLDDHMRRHTGEKP 134
EKP++C +C + R +HL H H+GE+P
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
508- 540) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.9 bits (76), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 104 EKPFRCALCAYSARRKTHLDDHMRRHTGEKP 134
EKP++C C + +HL +H R HTG KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 45
Score = 33.5 bits (75), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 18/30 (60%)
Query: 104 EKPFRCALCAYSARRKTHLDDHMRRHTGEK 133
+KPF C C S R K +L H R HTGEK
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQRIHTGEK 39
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.5 bits (75), Expect = 0.069, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 104 EKPFRCALCAYSARRKTHLDDHMRRHTGEKP 134
EKP++C C R ++L H R HTGEKP
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 33.1 bits (74), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 104 EKPFRCALCAYSARRKTHLDDHMRRHTGEKPHA 136
EK ++C +C + +HL H R HTGEKP
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSG 42
>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
301- 331) Of Human Zinc Finger Protein 268
Length = 44
Score = 33.1 bits (74), Expect = 0.089, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 102 NGEKPFRCALCAYSARRKTHLDDHMRRHTGEK 133
+GEKP+ C C K++L H R HTGEK
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
Score = 29.3 bits (64), Expect = 1.5, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 130 TGEKPHACGMCGYECAQGSQLMQHLRKVHKVDKKGG 165
+GEKP+ C CG + + S L+ H R +H +K G
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQR-IHTGEKLSG 40
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 33.1 bits (74), Expect = 0.090, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 104 EKPFRCALCAYSARRKTHLDDHMRRHTGEKP 134
EKP+ C C + +K+ L H R HTGEKP
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(699- 729) From Zinc Finger Protein 473
Length = 44
Score = 33.1 bits (74), Expect = 0.11, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 102 NGEKPFRCALCAYSARRKTHLDDHMRRHTGEKP 134
+G+KP C C + R+ + L H R H+GEKP
Sbjct: 6 SGKKPLVCNECGKTFRQSSCLSKHQRIHSGEKP 38
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 36/92 (39%), Gaps = 9/92 (9%)
Query: 78 TYMCYLCNYHTPTRKY-----MRTHIDTHNGEKPFRCAL--CAYSARRKTHLDDHMRRHT 130
Y Y+C++ Y ++ H+ H GEKPF C C HL H HT
Sbjct: 9 VYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHT 68
Query: 131 GEKPHACGM--CGYECAQGSQLMQHLRKVHKV 160
GEK C C + + +H + H +
Sbjct: 69 GEKNFTCDSDGCDLRFTTKANMKKHFNRFHNI 100
>pdb|1XF7|A Chain A, High Resolution Nmr Structure Of The Wilms' Tumor
Suppressor Protein (Wt1) Finger 3
Length = 29
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 16/29 (55%)
Query: 105 KPFRCALCAYSARRKTHLDDHMRRHTGEK 133
KPF+C C R HL H R HTGEK
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTHTRTHTGEK 29
>pdb|2EPQ|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 45
Score = 32.7 bits (73), Expect = 0.11, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 102 NGEKPFRCALCAYSARRKTHLDDHMRRHTG 131
+GEKP+ C +C +RK + H+R H G
Sbjct: 6 SGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 26.6 bits (57), Expect = 8.5, Method: Composition-based stats.
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 130 TGEKPHACGMCGYECAQGSQLMQHLR 155
+GEKP++C +CG + ++ H+R
Sbjct: 6 SGEKPYSCPVCGLRFKRKDRMSYHVR 31
>pdb|2EL5|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 42
Score = 32.7 bits (73), Expect = 0.12, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 102 NGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACG 138
+GE P+ C+ C + RK L H R H GE + G
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQRTHAGESGPSSG 42
>pdb|2EP1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
435- 467) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.7 bits (73), Expect = 0.13, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 104 EKPFRCALCAYSARRKTHLDDHMRRHTGEKP 134
EKP+ C+ C S +K+ L H R HTGE P
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHTGENP 40
>pdb|2ELZ|A Chain A, Solution Structure Of The 17th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 104 EKPFRCALCAYSARRKTHLDDHMRRHTGEK 133
EKP++C C R+ +LD H R H GEK
Sbjct: 10 EKPYKCEDCGKGYNRRLNLDMHQRVHMGEK 39
>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
581- 609) Of Human Zinc Finger Protein 268
Length = 42
Score = 32.3 bits (72), Expect = 0.17, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 102 NGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACG 138
+GEKP+ C C + K+ L H R HTGE + G
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTHTGESGPSSG 42
Score = 26.6 bits (57), Expect = 9.7, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 130 TGEKPHACGMCGYECAQGSQLMQHLR 155
+GEKP+ C CG SQL+ H R
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQR 31
>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 104 EKPFRCALCAYSARRKTHLDDHMRRHTGEKP 134
EKP++C C + R ++L H HTGEKP
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 32.0 bits (71), Expect = 0.20, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 102 NGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHA 136
+GEKP++C C S ++ L H R HTG P +
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTGSGPSS 40
>pdb|2EPS|A Chain A, Solution Structure Of The 4th Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 54
Score = 32.0 bits (71), Expect = 0.20, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 105 KPFRCALCAYSARRKTHLDDHMRR-HTGEKPHAC 137
KP+ C C R HL+ H+++ HT E+PH C
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKC 44
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.0 bits (71), Expect = 0.22, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 104 EKPFRCALCAYSARRKTHLDDHMRRHTGEKP 134
EKP++C C + + + L H R HTGEKP
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 26.6 bits (57), Expect = 9.6, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 132 EKPHACGMCGYECAQGSQLMQHLRKVHKVDKKGG 165
EKP+ C CG +Q S+L +H R +H +K G
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQR-IHTGEKPSG 42
>pdb|2EMZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
628- 660) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 31.6 bits (70), Expect = 0.26, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 104 EKPFRCALCAYSARRKTHLDDHMRRHTGEK 133
E+PF+C C R++HL H+R H+ EK
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLHSREK 39
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 31.6 bits (70), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 104 EKPFRCALCAYSARRKTHLDDHMRRHTGEKPHA 136
EKP++C C + +HL H R HTG KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTGGKPSG 42
>pdb|2EMX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
273- 303) Of Human Zinc Finger Protein 268
Length = 44
Score = 31.6 bits (70), Expect = 0.27, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 102 NGEKPFRCALCAYSARRKTHLDDHMRRHTGEKP 134
+GEKPF C+ C + K++L H + H EKP
Sbjct: 6 SGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKP 38
>pdb|2EPZ|A Chain A, Solution Structure Of The 4th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 28 Homolog
Length = 46
Score = 31.6 bits (70), Expect = 0.29, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 104 EKPFRCALCAYSARRKTHLDDHMRRHTGEKP 134
EKPF C C + L+ H R HTGEKP
Sbjct: 10 EKPFDCIDCGKAFSDHIGLNQHRRIHTGEKP 40
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
368- 400) Of Human Zinc Finger Protein 347
Length = 46
Score = 31.6 bits (70), Expect = 0.30, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 104 EKPFRCALCAYSARRKTHLDDHMRRHTGEKP 134
EKP++C C + R ++ L H H+GEKP
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHSGEKP 40
>pdb|2EOQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
283- 315) Of Human Zinc Finger Protein 224
Length = 46
Score = 31.6 bits (70), Expect = 0.31, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 104 EKPFRCALCAYSARRKTHLDDHMRRHTGEKP 134
EKPF+C +C S ++ L+ H HT EKP
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVHTAEKP 40
>pdb|2EM9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
367- 399) Of Human Zinc Finger Protein 224
Length = 46
Score = 31.6 bits (70), Expect = 0.31, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 104 EKPFRCALCAYSARRKTHLDDHMRRHTGEKP 134
EKP+ C C S R + L H R H+GEKP
Sbjct: 10 EKPYNCKECGKSFRWASCLLKHQRVHSGEKP 40
>pdb|2YTO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
659- 691) Of Human Zinc Finger Protein 484
Length = 46
Score = 31.2 bits (69), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 104 EKPFRCALCAYSARRKTHLDDHMRRHTGEK 133
EKP++C+ C + RK+ L H + HTGE+
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSHTGER 39
>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
255- 287) Of Human Zinc Finger Protein 224
Length = 46
Score = 31.2 bits (69), Expect = 0.32, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 104 EKPFRCALCAYSARRKTHLDDHMRRHTGEKP 134
EKP+ C C + + L +H R HTGEKP
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Transcriptional Repressor Ctcf
Length = 86
Score = 31.2 bits (69), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 100 THNGEKPFRCALCAYSARRKTHLDDHMRRH 129
TH GEKP+ C+ C + R+K LD H +R+
Sbjct: 9 THTGEKPYACSHCDKTFRQKQLLDMHFKRY 38
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 127 RRHTGEKPHACGMCGYECAQGSQLMQHLRKVH 158
R HTGEKP+AC C Q L H ++ H
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYH 39
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 31.2 bits (69), Expect = 0.34, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 104 EKPFRCALCAYSARRKTHLDDHMRRHTGEKP 134
E+P+ C +C + +++L H + HTGEKP
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
>pdb|1X5W|A Chain A, Solution Structure Of The C2h2 Type Zinc-Binding Domain Of
Human Zinc Finger Protein 64, Isoforms 1 And 2
Length = 70
Score = 31.2 bits (69), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 24/39 (61%)
Query: 94 MRTHIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGE 132
+R H H ++PF+C C++ ++ ++L HM++ G+
Sbjct: 25 LRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGD 63
Score = 30.4 bits (67), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 21/34 (61%)
Query: 4 HVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIH 37
H R H + F+C++C + KQ +++ H+++ H
Sbjct: 28 HERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFH 61
Score = 30.0 bits (66), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 119 KTHLDDHMRRHTGEKPHACGMCGYECAQGSQLMQHLRKVH 158
K L H R H ++P C C ++ Q S L +H++K H
Sbjct: 22 KAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFH 61
>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
544- 576) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 31.2 bits (69), Expect = 0.37, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 104 EKPFRCALCAYSARRKTHLDDHMRRHTGEKP 134
E+P +C C S + HL H R HTGEKP
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40
Score = 27.3 bits (59), Expect = 5.2, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 132 EKPHACGMCGYECAQGSQLMQHLRKVHKVDKKGG 165
E+PH C CG Q + L+QH R +H +K G
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQR-IHTGEKPSG 42
>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
284- 316) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.8 bits (68), Expect = 0.42, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 104 EKPFRCALCAYSARRKTHLDDHMRRHTGEK 133
EKP++C C + R +++L H HTGEK
Sbjct: 10 EKPYKCYECGKAFRTRSNLTTHQVIHTGEK 39
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
Zinc Finger Protein 32
Length = 42
Score = 30.8 bits (68), Expect = 0.47, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 104 EKPFRCALCAYSARRKTHLDDHMRRHTGEKPHA 136
EKP+RC C + +K L H+R HTG P +
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSS 41
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
564- 596) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.8 bits (68), Expect = 0.52, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 104 EKPFRCALCAYSARRKTHLDDHMRRHTGEKP 134
EKP++C C + +HL H HTGEKP
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
>pdb|2EL4|A Chain A, Solution Structure Of The 15th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 30.4 bits (67), Expect = 0.55, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 105 KPFRCALCAYSARRKTHLDDHMRRHTGEKP 134
KP+ C+ CA + K+ L H R HTG KP
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 30.4 bits (67), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 105 KPFRCALCAYSARRKTHLDDHMRRHTGEKPHA 136
KP++C C + + + L H R HTGEKP
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKPSG 42
>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
809- 841) Of Human Zinc Finger Protein 473
Length = 46
Score = 30.4 bits (67), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 104 EKPFRCALCAYSARRKTHLDDHMRRHTGE 132
EKP+ C +C + HL+ H+R HT E
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHTQE 38
Score = 26.9 bits (58), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 132 EKPHACGMCGYECAQGSQLMQHLRKVHKVDKKGG 165
EKP++C +CG + L QHLR VH + G
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLR-VHTQETLSG 42
>pdb|2EMY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
551- 583) Of Human Zinc Finger Protein 268
Length = 46
Score = 30.4 bits (67), Expect = 0.62, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 104 EKPFRCALCAYSARRKTHLDDHMRRHTGEKP 134
E P+ C C + RK L H R H GEKP
Sbjct: 10 ENPYECHECGKAFSRKYQLISHQRTHAGEKP 40
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.4 bits (67), Expect = 0.64, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 104 EKPFRCALCAYSARRKTHLDDHMRRHTGEKP 134
EKP+ C++C + + L H R H+G+KP
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
>pdb|2EM4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
724- 756) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.4 bits (67), Expect = 0.64, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 104 EKPFRCALCAYSARRKTHLDDHMRRHTGEKP 134
++P+ C C + + K+ L H R HTGEKP
Sbjct: 10 QRPYECIECGKAFKTKSSLICHRRSHTGEKP 40
>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
340- 372) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.4 bits (67), Expect = 0.68, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 104 EKPFRCALCAYSARRKTHLDDHMRRHTGEKP 134
EKP++C C + +HL H HTGEKP
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40
>pdb|2LVT|A Chain A, Solution Structure Of Miz-1 Zinc Finger 9
Length = 29
Score = 30.0 bits (66), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 105 KPFRCALCAYSARRKTHLDDHMRRHTGEK 133
KP +C +C + + + L H+R+HTGEK
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
463- 495) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.0 bits (66), Expect = 0.71, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 104 EKPFRCALCAYSARRKTHLDDHMRRHTGEKP 134
E PF C+ C KT+L H + HTGE+P
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQKIHTGERP 40
>pdb|2EOF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
411- 441) Of Human Zinc Finger Protein 268
Length = 44
Score = 30.0 bits (66), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 104 EKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACG 138
EKP+ C C + K++L H R HTGE + G
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTHTGESGPSSG 44
>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
859- 889) Of Human Zinc Finger Protein 268
Length = 44
Score = 30.0 bits (66), Expect = 0.80, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 104 EKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACG 138
EKP+ C+ C + R + L H R H+GE + G
Sbjct: 10 EKPYECSECGKAFIRNSQLIVHQRTHSGESGPSSG 44
Score = 26.6 bits (57), Expect = 8.5, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 130 TGEKPHACGMCGYECAQGSQLMQHLR 155
T EKP+ C CG + SQL+ H R
Sbjct: 8 TREKPYECSECGKAFIRNSQLIVHQR 33
>pdb|2EM5|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
768- 800) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 30.0 bits (66), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 105 KPFRCALCAYSARRKTHLDDHMRRHTGEKP 134
K +C C K+HL+ H R HTGEKP
Sbjct: 11 KSHQCHECGRGFTLKSHLNQHQRIHTGEKP 40
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
637- 667) Of Human Zinc Finger Protein 268
Length = 44
Score = 30.0 bits (66), Expect = 0.89, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 102 NGEKPFRCALCAYSARRKTHLDDHMRRHTGEKP 134
+GEKP+ C C + K+ L H HTG KP
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 27.7 bits (60), Expect = 3.5, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 130 TGEKPHACGMCGYECAQGSQLMQHLRKVHKVDKKGG 165
+GEKP++C CG SQL+ H + VH K G
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVH-KGVHTGVKPSG 40
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
556- 588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 29.6 bits (65), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 104 EKPFRCALCAYSARRKTHLDDHMRRHTGEKP 134
EKP+ C +C + L H R H+GEKP
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
732- 764) Of Human Zinc Finger Protein 347
Length = 46
Score = 29.6 bits (65), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 104 EKPFRCALCAYSARRKTHLDDHMRRHTGEKPHA 136
+KP++C C + +HL H HTGEKP
Sbjct: 10 KKPYKCNECGKVFTQNSHLARHRGIHTGEKPSG 42
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 29.6 bits (65), Expect = 1.0, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 104 EKPFRCALCAYSARRKTHLDDHMRRHTGEKP 134
EKP+ C C + L H R HTGEKP
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
>pdb|2ENT|A Chain A, Solution Structure Of The Second C2h2-Type Zinc Finger
Domain From Human Krueppel-Like Factor 15
Length = 48
Score = 29.6 bits (65), Expect = 1.1, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 104 EKPFRCAL--CAYSARRKTHLDDHMRRHTGEKP 134
EKPF C C + R L H R H+G KP
Sbjct: 10 EKPFACTWPGCGWRFSRSDELSRHRRSHSGVKP 42
>pdb|2EOS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
626- 654) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 29.6 bits (65), Expect = 1.2, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 104 EKPFRCALCAYSARRKTHLDDHMRRHTGEKPHA 136
EKP+ C +C R L H+R HTG P +
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSS 41
>pdb|2DRP|A Chain A, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
pdb|2DRP|D Chain D, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
Length = 66
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 8/66 (12%)
Query: 100 THNGEKPFRCALCAYSARRKTHLDDHMRRHTGE-----KPHACGMCGYECAQGSQLMQHL 154
T GE +RC +C+ R TH+ + R + K + C C E + + H+
Sbjct: 4 TKEGEHTYRCKVCS---RVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHV 60
Query: 155 RKVHKV 160
+ +HK+
Sbjct: 61 KIIHKI 66
>pdb|2ENC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
395- 427) Of Human Zinc Finger Protein 224
Length = 46
Score = 29.3 bits (64), Expect = 1.2, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 104 EKPFRCALCAYSARRKTHLDDHMRRHTGEKP 134
EKPF+C C + H R H+GEKP
Sbjct: 10 EKPFKCEECGKGFYTNSQCYSHQRSHSGEKP 40
>pdb|2EN7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
495- 525) Of Human Zinc Finger Protein 268
Length = 44
Score = 29.3 bits (64), Expect = 1.2, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 105 KPFRCALCAYSARRKTHLDDHMRRHTGEKPHACG 138
KP+ C C + R K++L H R HTGE + G
Sbjct: 11 KPYVCNECGKAFRSKSYLIIHTRTHTGESGPSSG 44
>pdb|2EPR|A Chain A, Solution Structure Of The Secound Zinc Finger Domain Of
Zinc Finger Protein 278
Length = 48
Score = 29.3 bits (64), Expect = 1.2, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 105 KPFRCALCAYSARRKTHLDDHMRRHTGEKPHACG 138
K C +C R HL+ H H+GEKP++ G
Sbjct: 11 KQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSG 44
>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
312- 344) Of Human Zinc Finger Protein 347
Length = 46
Score = 29.3 bits (64), Expect = 1.3, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 104 EKPFRCALCAYSARRKTHLDDHMRRHTGEKP 134
EK ++C C R + L H + HTGEKP
Sbjct: 10 EKRYKCNECGKVFSRNSQLSQHQKIHTGEKP 40
>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
687- 719) Of Human Zinc Finger Protein 484
Length = 46
Score = 28.9 bits (63), Expect = 1.6, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 104 EKPFRCALCAYSARRKTHLDDHMRRHTGEKP 134
E+ + C+ C + RK+ L H R HTGEKP
Sbjct: 10 ERHYECSECGKAFARKSTLIMHQRIHTGEKP 40
>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
Zinc Finger Protein 473
Length = 42
Score = 28.9 bits (63), Expect = 1.6, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 102 NGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACG 138
+GEKP+ C C + + + L H R HTGE + G
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHTGESGPSSG 42
>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
385- 413) Of Human Zinc Finger Protein 268
Length = 42
Score = 28.9 bits (63), Expect = 1.6, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 102 NGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACG 138
+G+KP+ C C + K+ L H R HTGE + G
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIHTGESGPSSG 42
Score = 26.6 bits (57), Expect = 8.9, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 130 TGEKPHACGMCGYECAQGSQLMQHLR 155
+G+KP+ C CG SQL+ H R
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHER 31
>pdb|1U85|A Chain A, Arg326-Trp Mutant Of The Third Zinc Finger Of Bklf
Length = 33
Score = 28.9 bits (63), Expect = 1.8, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 103 GEKPFRCALCAYSARRKTHLDDHMRRH 129
G KPF+C C +S R HL H +RH
Sbjct: 4 GIKPFQCPDCDWSFSRSDHLALHRKRH 30
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 33/65 (50%), Gaps = 10/65 (15%)
Query: 100 THNGEKPFRCALC----AYSARRKTHLDDHMRRHTGE--KPHACGMCGYECAQGSQLMQH 153
TH+GEKP+ C +C S K H+ +++HT K H C C A+ S L H
Sbjct: 9 THSGEKPYECYICHARFTQSGTMKMHI---LQKHTENVAKFH-CPHCDTVIARKSDLGVH 64
Query: 154 LRKVH 158
LRK H
Sbjct: 65 LRKQH 69
Score = 26.6 bits (57), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 6 RTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNFVCVHCKQFEVVPTRKT 58
RTH ++ +EC C Q+ + H+ Q H N HC + V RK+
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHT-ENVAKFHCPHCDTVIARKS 59
>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
379- 411) Of Human Zinc Finger Protein 484
Length = 46
Score = 28.9 bits (63), Expect = 1.9, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 105 KPFRCALCAYSARRKTHLDDHMRRHTGEKP 134
K F C C + RK+ L H + HTGEKP
Sbjct: 11 KHFECTECGKAFTRKSTLSMHQKIHTGEKP 40
>pdb|2EN2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
598- 626) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 104 EKPFRCALCAYSARRKTHLDDHMRRHTGEKPHA 136
EKP++C C + HL H+ HTG P +
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHVLIHTGSGPSS 41
>pdb|2EMC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
641- 673) Of Human Zinc Finger Protein 473
Length = 46
Score = 28.5 bits (62), Expect = 2.2, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 104 EKPFRCALCAYSARRKTHLDDHMRRHTGEKP 134
E PF+C C + HL H H GE P
Sbjct: 10 EHPFKCNECGKTFSHSAHLSKHQLIHAGENP 40
>pdb|2EPT|A Chain A, Solution Structure Of The First C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 41
Score = 28.5 bits (62), Expect = 2.3, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 102 NGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHA 136
+G++ + C C S R+K L H R HTG P +
Sbjct: 6 SGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSS 40
>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 28.1 bits (61), Expect = 2.9, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 104 EKPFRCALCAYSARRKTHLDDHMRRHTGEKP 134
EKP+ C C + ++ L H HTG+KP
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
>pdb|2YTM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
696- 728) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 104 EKPFRCALCAYSARRKTHLDDHMRRHTGEKPHA 136
EKP++C C + + H R HTG++P
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSG 42
>pdb|2EOO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
425- 457) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 28.1 bits (61), Expect = 3.4, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 104 EKPFRCALCAYSARRKTHLDDHMRRHTGEK 133
E+P+ C C + R +HL +H++RH EK
Sbjct: 10 ERPYGCNECGKNFGRHSHLIEHLKRHFREK 39
>pdb|2GHF|A Chain A, Solution Structure Of The Complete Zinc-Finger Region Of
Human Zinc-Fingers And Homeoboxes 1 (Zhx1)
Length = 102
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 5/66 (7%)
Query: 79 YMCYLCNYHTPTRKYMRTHIDTHNG----EKPFRCALCAYSARRKTHLDDH-MRRHTGEK 133
Y C C + TP H+D+ + + C C + +R L +H ++ H GE+
Sbjct: 19 YECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEE 78
Query: 134 PHACGM 139
M
Sbjct: 79 NFKLTM 84
>pdb|2EOV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
519- 551) Of Human Zinc Finger Protein 484
Length = 46
Score = 27.7 bits (60), Expect = 3.6, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 104 EKPFRCALCAYSARRKTHLDDHMRRHTGEK 133
EKP++C+ C S K+ L H + HTGE+
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQKCHTGER 39
>pdb|2KVH|A Chain A, Structure Of The Three-Cys2his2 Domain Of Mouse Testis
Zinc Finger Protein
Length = 27
Score = 27.7 bits (60), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 104 EKPFRCALCAYSARRKTHLDDHMRRH 129
EKPF C+LC +R + + H+R H
Sbjct: 1 EKPFSCSLCPQRSRDFSAMTKHLRTH 26
>pdb|2YTJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
771- 803) Of Human Zinc Finger Protein 484
Length = 46
Score = 27.7 bits (60), Expect = 4.4, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 104 EKPFRCALCAYSARRKTHLDDHMRRHTGEKP 134
EKP+ CA C + +++L H + HT +KP
Sbjct: 10 EKPYICAECGKAFTIRSNLIKHQKIHTKQKP 40
>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
415- 447) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 27.7 bits (60), Expect = 4.4, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 104 EKPFRCALCAYSARRKTHLDDHMRRHTGEKP 134
+K F+C C + + + L H R HTGEKP
Sbjct: 10 KKLFKCNECKKTFTQSSSLTVHQRIHTGEKP 40
>pdb|2EOP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
719- 751) Of Human Zinc Finger Protein 268
Length = 46
Score = 27.3 bits (59), Expect = 4.7, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 15/31 (48%)
Query: 104 EKPFRCALCAYSARRKTHLDDHMRRHTGEKP 134
EKP C C S + L H R HTGE P
Sbjct: 10 EKPHECRECGKSFSFNSQLIVHQRIHTGENP 40
>pdb|2EOH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
780- 812) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 27.3 bits (59), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 104 EKPFRCALCAYSARRKTHLDDHMRRHTGEK 133
+KP+ C C + + HL+ H R HTGE+
Sbjct: 10 KKPYECKECRKTFIQIGHLNQHKRVHTGER 39
>pdb|2D9H|A Chain A, Solution Structure Of The Forth And Fifth Zf-C2h2 Domains
Of Zinc Finger Protein 692
Length = 78
Score = 26.9 bits (58), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 102 NGEKPFRCALCAYSARRKTHLDDHMRRHT 130
+G +C +C ++ R+K L+ H R+H
Sbjct: 3 SGSSGLQCEICGFTCRQKASLNWHQRKHA 31
>pdb|1P7A|A Chain A, Solution Stucture Of The Third Zinc Finger From Bklf
Length = 37
Score = 26.9 bits (58), Expect = 6.2, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 103 GEKPFRCALCAYSARRKTHLDDHMRRH 129
G KPF+C C S R HL H +RH
Sbjct: 8 GIKPFQCPDCDRSFSRSDHLALHRKRH 34
>pdb|2EL6|A Chain A, Solution Structure Of The 21th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 26.9 bits (58), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 106 PFRCALCAYSARRKTHLDDHMRRHTGEKPHA 136
P++C+ C S K L H R HT EKP
Sbjct: 12 PYKCSQCEKSFSGKLRLLVHQRMHTREKPSG 42
>pdb|2LVU|A Chain A, Solution Structure Of Miz-1 Zinc Finger 10
Length = 26
Score = 26.9 bits (58), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 133 KPHACGMCGYECAQGSQLMQHLR 155
KP+ C CG Q SQL H+R
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIR 23
>pdb|2EQ4|A Chain A, Solution Structure Of The 11th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 224
Length = 46
Score = 26.9 bits (58), Expect = 6.4, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 104 EKPFRCALCAYSARRKTHLDDHMRRHTGEKP 134
EK + C C S R L H R H+GEKP
Sbjct: 10 EKLYNCKECGKSFSRAPCLLKHERLHSGEKP 40
>pdb|1ARD|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 26.6 bits (57), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 106 PFRCALCAYSARRKTHLDDHMRRHTGEK 133
F C +C + R+ HL H R HT EK
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNEK 29
>pdb|2YTE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
484- 512) Of Human Zinc Finger Protein 473
Length = 42
Score = 26.6 bits (57), Expect = 9.1, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 130 TGEKPHACGMCGYECAQGSQLMQHLRKVHKV 160
+GEKP++C C + ++L+QH +K+H V
Sbjct: 6 SGEKPYSCAECKETFSDNNRLVQH-QKMHTV 35
>pdb|2EPX|A Chain A, Solution Structure Of The Third C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 28 Homolog
Length = 47
Score = 26.6 bits (57), Expect = 9.2, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 132 EKPHACGMCGYECAQGSQLMQHLRKVHKVDKKGG 165
+KP+ C CG Q + L++H R H +K G
Sbjct: 10 KKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSG 43
Score = 26.6 bits (57), Expect = 9.8, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 104 EKPFRCALCAYSARRKTHLDDHMR-RHTGEKP 134
+KP+ C C + + T L H R HTGEKP
Sbjct: 10 KKPYECIECGKAFIQNTSLIRHWRYYHTGEKP 41
>pdb|2EOK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
441- 469) Of Human Zinc Finger Protein 268
Length = 42
Score = 26.6 bits (57), Expect = 9.3, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 102 NGEKPFRCALCAYSARRKTHLDDHMRRHTG 131
+GEKP+ C+ C + K+ L H HTG
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIHTG 35
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.136 0.458
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,557,915
Number of Sequences: 62578
Number of extensions: 206285
Number of successful extensions: 910
Number of sequences better than 100.0: 172
Number of HSP's better than 100.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 400
Number of HSP's gapped (non-prelim): 470
length of query: 188
length of database: 14,973,337
effective HSP length: 93
effective length of query: 95
effective length of database: 9,153,583
effective search space: 869590385
effective search space used: 869590385
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 48 (23.1 bits)