RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13443
(188 letters)
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 45.4 bits (108), Expect = 4e-08
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 104 EKPFRCALCAYSARRKTHLDDHMRR-HTGEKPHAC 137
KP+ C C R HL+ H+++ HT E+PH C
Sbjct: 3 GKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKC 37
Score = 33.8 bits (78), Expect = 7e-04
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 130 TGEKPHACGMCGYECAQGSQLMQHLRKVH 158
+ KP+ C CG ++ L H+++VH
Sbjct: 1 SVGKPYICQSCGKGFSRPDHLNGHIKQVH 29
Score = 29.2 bits (66), Expect = 0.035
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 79 YMCYLCNYHTPTRKYMRTHI-DTHNGEKPFRC 109
Y+C C ++ HI H E+P +C
Sbjct: 6 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKC 37
Score = 24.2 bits (53), Expect = 2.0
Identities = 6/26 (23%), Positives = 13/26 (50%)
Query: 14 FECDFCPYGAKQAADVHNHVQQIHMG 39
+ C C G + ++ H++Q+H
Sbjct: 6 YICQSCGKGFSRPDHLNGHIKQVHTS 31
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 43.4 bits (103), Expect = 2e-07
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 101 HNGEKPFRCALCAYSARRKTHLDDHMRRHTGE 132
H+GEKP+ C C + R + L H R HTGE
Sbjct: 2 HSGEKPYGCVECGKAFSRSSILVQHQRVHTGE 33
Score = 36.4 bits (85), Expect = 7e-05
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 129 HTGEKPHACGMCGYECAQGSQLMQHLR 155
H+GEKP+ C CG ++ S L+QH R
Sbjct: 2 HSGEKPYGCVECGKAFSRSSILVQHQR 28
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 41.6 bits (98), Expect = 1e-06
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 100 THNGEKPFRCALCAYSARRKTHLDDHMRRHTGEK 133
TH GEKP+ C+ C + R+K LD H +R+
Sbjct: 2 THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPN 35
Score = 37.0 bits (86), Expect = 4e-05
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 127 RRHTGEKPHACGMCGYECAQGSQLMQHLRKVH 158
R HTGEKP+AC C Q L H ++ H
Sbjct: 1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYH 32
Score = 23.1 bits (50), Expect = 4.6
Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 6 RTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGVNF 42
RTH ++ + C C +Q + H + + NF
Sbjct: 1 RTHTGEKPYACSHCDKTFRQKQLLDMH-FKRYHDPNF 36
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 41.1 bits (97), Expect = 1e-06
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 100 THNGEKPFRCALCAYSARRKTHLDDHMRRHTGEK 133
TH+GEKP+ C +C + + H+ + E
Sbjct: 2 THSGEKPYECYICHARFTQSGTMKMHILQKHTEN 35
Score = 40.0 bits (94), Expect = 4e-06
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 127 RRHTGEKPHACGMCGYECAQGSQLMQHLRKVH 158
R H+GEKP+ C +C Q + H+ + H
Sbjct: 1 RTHSGEKPYECYICHARFTQSGTMKMHILQKH 32
Score = 25.3 bits (56), Expect = 0.81
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 6 RTHLAKQQFECDFCPYGAKQAADVHNHVQQIH 37
RTH ++ +EC C Q+ + H+ Q H
Sbjct: 1 RTHSGEKPYECYICHARFTQSGTMKMHILQKH 32
>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing
protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}
Length = 38
Score = 40.5 bits (95), Expect = 2e-06
Identities = 10/36 (27%), Positives = 14/36 (38%)
Query: 97 HIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGE 132
+ ++C C S + L H R HTGE
Sbjct: 3 SEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE 38
Score = 37.8 bits (88), Expect = 3e-05
Identities = 7/31 (22%), Positives = 12/31 (38%)
Query: 125 HMRRHTGEKPHACGMCGYECAQGSQLMQHLR 155
+ + + C CG + S L +H R
Sbjct: 3 SEWQQRERRRYKCDECGKSFSHSSDLSKHRR 33
Score = 22.8 bits (49), Expect = 6.6
Identities = 8/37 (21%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 3 RHVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMG 39
R +++++CD C ++D+ H ++ H G
Sbjct: 2 RSEWQQRERRRYKCDECGKSFSHSSDLSKH-RRTHTG 37
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 29
Score = 39.5 bits (93), Expect = 5e-06
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 105 KPFRCALCAYSARRKTHLDDHMRRHTGEK 133
+ F C +C + R+ HL H R HT EK
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 26.8 bits (60), Expect = 0.18
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 133 KPHACGMCGYECAQGSQLMQHLR 155
+ C +C A+ L +H R
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYR 23
Score = 23.0 bits (50), Expect = 4.2
Identities = 6/27 (22%), Positives = 15/27 (55%)
Query: 79 YMCYLCNYHTPTRKYMRTHIDTHNGEK 105
++C +C +++++ H +H EK
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEK 29
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 38.9 bits (91), Expect = 8e-06
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 105 KPFRCALCAYSARRKTHLDDHMRRHTGEK 133
K F C C R HL H++ H +K
Sbjct: 1 KKFACPECPKRFMRSDHLSKHIKTHQNKK 29
Score = 27.7 bits (62), Expect = 0.10
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 133 KPHACGMCGYECAQGSQLMQHLR 155
K AC C + L +H++
Sbjct: 1 KKFACPECPKRFMRSDHLSKHIK 23
Score = 25.4 bits (56), Expect = 0.72
Identities = 7/27 (25%), Positives = 11/27 (40%)
Query: 79 YMCYLCNYHTPTRKYMRTHIDTHNGEK 105
+ C C ++ HI TH +K
Sbjct: 3 FACPECPKRFMRSDHLSKHIKTHQNKK 29
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 37
Score = 38.9 bits (91), Expect = 1e-05
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 125 HMRRHTGEKPHACGMCGYECAQGSQLMQHLRK 156
R TG KP C C ++ L H ++
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKR 33
Score = 37.8 bits (88), Expect = 2e-05
Identities = 13/35 (37%), Positives = 15/35 (42%)
Query: 97 HIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTG 131
G KPF+C C S R HL H +RH
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHML 36
Score = 24.3 bits (53), Expect = 1.9
Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 4 HVRTHLAKQQFECDFCPYGAKQAADVHNHVQQIHMGV 40
R + F+C C ++ + H ++ HM V
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALH-RKRHMLV 37
>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 38.5 bits (89), Expect = 2e-05
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 104 EKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMCGYECAQGSQLMQHLR 155
+K + C C S K+ D HM H G +P+ CG+CG + L+ H++
Sbjct: 1 DKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMK 51
Score = 28.5 bits (63), Expect = 0.074
Identities = 13/46 (28%), Positives = 20/46 (43%)
Query: 84 CNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKTHLDDHMRRH 129
C + H+ H G +P+ C +C + K HL HM+ H
Sbjct: 8 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53
>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 29
Score = 36.9 bits (85), Expect = 4e-05
Identities = 13/29 (44%), Positives = 21/29 (72%)
Query: 104 EKPFRCALCAYSARRKTHLDDHMRRHTGE 132
E+PF+C +C Y++R + L H+R HTG+
Sbjct: 1 ERPFKCQICPYASRNSSQLTVHLRSHTGD 29
Score = 25.4 bits (55), Expect = 0.65
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 132 EKPHACGMCGYECAQGSQLMQHLRK 156
E+P C +C Y SQL HLR
Sbjct: 1 ERPFKCQICPYASRNSSQLTVHLRS 25
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 35
Score = 37.0 bits (86), Expect = 5e-05
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 101 HNGEKPFRCALCAYSARRKTHLDDHMRRHTGE 132
+G++PF C +C + K + H++ HT
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDT 33
Score = 31.6 bits (72), Expect = 0.003
Identities = 6/27 (22%), Positives = 13/27 (48%)
Query: 129 HTGEKPHACGMCGYECAQGSQLMQHLR 155
+G++P C +C + +HL+
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLK 28
>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 36.6 bits (85), Expect = 7e-05
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 109 CALCAYSARRKTHLDDHMRRHTGEKPHAC 137
C S K HL +HM+ H+ + + C
Sbjct: 6 EPACGKSFNFKKHLKEHMKLHSDTRDYIC 34
Score = 28.5 bits (64), Expect = 0.058
Identities = 6/34 (17%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 78 TYMC--YLCNYHTPTRKYMRTHIDTHNGEKPFRC 109
++ C C +K+++ H+ H+ + + C
Sbjct: 1 SFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYIC 34
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 36.0 bits (84), Expect = 8e-05
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 104 EKPFRCALCAYSARRKTHLDDHMRRHTG 131
+KPF+C +C + R HL H+R HTG
Sbjct: 1 QKPFQCRICMRNFSRSDHLTTHIRTHTG 28
Score = 28.0 bits (63), Expect = 0.065
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 132 EKPHACGMCGYECAQGSQLMQHLR 155
+KP C +C ++ L H+R
Sbjct: 1 QKPFQCRICMRNFSRSDHLTTHIR 24
>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 31
Score = 35.0 bits (81), Expect = 2e-04
Identities = 13/31 (41%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 105 KPFRCAL--CAYSARRKTHLDDHMRRHTGEK 133
+PF C C R L H R HTGEK
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 22.7 bits (49), Expect = 5.6
Identities = 7/25 (28%), Positives = 11/25 (44%), Gaps = 2/25 (8%)
Query: 133 KPHACGM--CGYECAQGSQLMQHLR 155
+P C CG + +L +H R
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKR 25
>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 30
Score = 32.3 bits (74), Expect = 0.002
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 105 KPFRC--ALCAYSARRKTHLDDHMRRHTGE 132
KP +C C S R +L H+R HTGE
Sbjct: 1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE 30
Score = 21.9 bits (47), Expect = 9.4
Identities = 9/25 (36%), Positives = 11/25 (44%), Gaps = 2/25 (8%)
Query: 133 KPHAC--GMCGYECAQGSQLMQHLR 155
KPH C C ++ L HLR
Sbjct: 1 KPHKCTFEGCRKSYSRLENLKTHLR 25
>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 47
Score = 32.2 bits (73), Expect = 0.003
Identities = 7/45 (15%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 91 RKYMRTHIDTHNGEKPFRCALCAYSAR--RKTHLDDHMRRHTGEK 133
R + ++ +K F C + R+ ++ H++ H ++
Sbjct: 4 RGSIDKYV-KEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
Score = 30.3 bits (68), Expect = 0.014
Identities = 5/40 (12%), Positives = 15/40 (37%), Gaps = 3/40 (7%)
Query: 118 RKTHLDDHMRRHTGEKPHACG--MCGYECAQGSQLMQHLR 155
+ +D +++ +K C C + + H++
Sbjct: 3 PRGSIDKYVK-EMPDKTFECLFPGCTKTFKRRYNIRSHIQ 41
>d1ofcx3 a.187.1.1 (X:697-798) HAND domain of the nucleosome
remodeling ATPase ISWI {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 102
Score = 31.3 bits (71), Expect = 0.020
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 155 RKVHKVDKKGGEEEEEEEEEEEEEDNIE 182
KV K + G + + + EE+ + D E
Sbjct: 56 YKVPKNTELGSDATKVQREEQRKIDEAE 83
>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 29.6 bits (67), Expect = 0.020
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 105 KPFRC--ALCAYSARRKTHLDDHMRRHTGE 132
KPF+C C +L H+R HTG+
Sbjct: 1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD 30
>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 32
Score = 29.2 bits (66), Expect = 0.025
Identities = 7/31 (22%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
Query: 104 EKPFRC--ALCAYSARRKTHLDDHMRRHTGE 132
++P+ C C + R L H + H +
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEK 31
Score = 23.4 bits (51), Expect = 3.7
Identities = 5/26 (19%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 132 EKPHAC--GMCGYECAQGSQLMQHLR 155
++P++C C + L++H +
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKK 26
>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 29
Score = 29.2 bits (66), Expect = 0.030
Identities = 10/29 (34%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 105 KPFRC--ALCAYSARRKTHLDDHMRRHTG 131
+P+ C C R L H+R HTG
Sbjct: 1 RPYACPVESCDRRFSRSADLTRHIRIHTG 29
>d1kf6b1 a.1.2.1 (B:106-243) Fumarate reductase {Escherichia coli
[TaxId: 562]}
Length = 138
Score = 31.4 bits (70), Expect = 0.032
Identities = 11/88 (12%), Positives = 20/88 (22%)
Query: 70 MVRPDASYTYMCYLCNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKTHLDDHMRRH 129
S C LC P I R + +K + ++
Sbjct: 35 AKYHQFSGCINCGLCYAACPQFGLNPEFIGPAAITLAHRYNEDSRDHGKKERMAQLNSQN 94
Query: 130 TGEKPHACGMCGYECAQGSQLMQHLRKV 157
G C C + +++
Sbjct: 95 GVWSCTFVGYCSEVCPKHVDPAAAIQQG 122
>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 26
Score = 26.8 bits (60), Expect = 0.17
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 105 KPFRCALCAYSARRKTHLDDHMRRHT 130
KP++C C + + + L +H R HT
Sbjct: 1 KPYKCLECGKAFSQNSGLINHQRIHT 26
Score = 24.1 bits (53), Expect = 1.7
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 133 KPHACGMCGYECAQGSQLMQHLR 155
KP+ C CG +Q S L+ H R
Sbjct: 1 KPYKCLECGKAFSQNSGLINHQR 23
>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 26.3 bits (57), Expect = 0.35
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 133 KPHACGMCGYECAQGSQLMQHLR 155
KP+ C C Y A S L +HLR
Sbjct: 2 KPYKCKTCDYAAADSSSLNKHLR 24
Score = 25.5 bits (55), Expect = 0.61
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 105 KPFRCALCAYSARRKTHLDDHMRRHT 130
KP++C C Y+A + L+ H+R H+
Sbjct: 2 KPYKCKTCDYAAADSSSLNKHLRIHS 27
>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 32
Score = 26.2 bits (57), Expect = 0.35
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 104 EKPFRCALCAYSARRKTHLDDHMRRHTG 131
EKP+ C +C +RK + H+R H G
Sbjct: 1 EKPYSCPVCGLRFKRKDRMSYHVRSHDG 28
>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 30
Score = 26.2 bits (57), Expect = 0.36
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 104 EKPFRCALCAYSARRKTHLDDHMRRHTGE 132
E+ F C++C + RR+ L HM HTGE
Sbjct: 2 EQVFTCSVCQETFRRRMELRLHMVSHTGE 30
>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 29
Score = 25.7 bits (56), Expect = 0.42
Identities = 7/24 (29%), Positives = 17/24 (70%)
Query: 14 FECDFCPYGAKQAADVHNHVQQIH 37
F+C++C + KQ +++ H+++ H
Sbjct: 3 FKCNYCSFDTKQPSNLSKHMKKFH 26
Score = 25.0 bits (54), Expect = 1.0
Identities = 8/28 (28%), Positives = 19/28 (67%)
Query: 105 KPFRCALCAYSARRKTHLDDHMRRHTGE 132
+PF+C C++ ++ ++L HM++ G+
Sbjct: 1 RPFKCNYCSFDTKQPSNLSKHMKKFHGD 28
Score = 24.6 bits (53), Expect = 1.4
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 133 KPHACGMCGYECAQGSQLMQHLRKVH 158
+P C C ++ Q S L +H++K H
Sbjct: 1 RPFKCNYCSFDTKQPSNLSKHMKKFH 26
>d1b74a1 c.78.2.1 (A:1-105) Glutamate racemase {Aquifex pyrophilus
[TaxId: 2714]}
Length = 105
Score = 27.0 bits (60), Expect = 0.61
Identities = 10/55 (18%), Positives = 19/55 (34%), Gaps = 9/55 (16%)
Query: 2 LRHVRTHLAKQQF----ECDFCPYGAKQAADVHNHVQQIH-----MGVNFVCVHC 47
L+ +R K + PYG + + + + GV+ + V C
Sbjct: 16 LKAIRNRYRKVDIVYLGDTARVPYGIRSKDTIIRYSLECAGFLKDKGVDIIVVAC 70
>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 24.7 bits (53), Expect = 0.98
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 133 KPHACGMCGYECAQGSQLMQHLRKVHKVDK 162
K + C C + A S L H++ H +K
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIKTKHSKEK 30
>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 35
Score = 25.0 bits (54), Expect = 0.99
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 109 CALCAYSARRKTHLDDHMRRHTGEKPHA 136
C +C R HL+ H H+GEKP++
Sbjct: 8 CEICGKIFRDVYHLNRHKLSHSGEKPYS 35
>d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA,
nucleotide-binding domains {Bacillus subtilis [TaxId:
1423]}
Length = 273
Score = 27.2 bits (60), Expect = 1.2
Identities = 12/133 (9%), Positives = 24/133 (18%), Gaps = 21/133 (15%)
Query: 24 KQAADVHNHVQQIHMGVNFVCVHCKQFEVVPTRKTQTLEHCATCVDMVRPDASYTYMCYL 83
++ A + + + V + + + ++ T L
Sbjct: 53 EKGATTDDLLVEAFAVVREASRRVTGMFPFKVQLMGGVALHDGNIAEMKTGEGKTLTSTL 112
Query: 84 CNYHTPTRKYMRTHIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMCGYE 143
Y AL T + R + G
Sbjct: 113 PVY---------------------LNALTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLT 151
Query: 144 CAQGSQLMQHLRK 156
M K
Sbjct: 152 VGLNLNSMSKDEK 164
>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 26
Score = 23.9 bits (51), Expect = 2.5
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 106 PFRCALCAYSARRKTHLDDHMRRHTG 131
P +C +C RK L HMR HTG
Sbjct: 1 PHKCEVCGKCFSRKDKLKTHMRCHTG 26
>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 23.5 bits (51), Expect = 2.6
Identities = 7/28 (25%), Positives = 12/28 (42%), Gaps = 2/28 (7%)
Query: 105 KPFRC--ALCAYSARRKTHLDDHMRRHT 130
+P+ C C + T+L H+ H
Sbjct: 1 RPYVCPFDGCNKKFAQSTNLKSHILTHA 28
>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 27
Score = 23.5 bits (50), Expect = 3.2
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 108 RCALCAYSARRKTHLDDHMRRHTGEK 133
C C K +L H R+HTGEK
Sbjct: 2 ECPTCHKKFLSKYYLKVHNRKHTGEK 27
>d1gsma2 b.1.1.4 (A:91-206) Mucosal addressin cell adhesion
molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId:
9606]}
Length = 116
Score = 24.5 bits (53), Expect = 4.8
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 150 LMQHLRKVHKVDKKGGEEEEEEEEEEEEEDNIEQ 183
L+ +++ G E +EEEEE + +ED + +
Sbjct: 39 LLVGGQELEGAQALGPEVQEEEEEPQGDEDVLFR 72
>d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 293
Score = 25.1 bits (54), Expect = 6.2
Identities = 12/143 (8%), Positives = 27/143 (18%), Gaps = 12/143 (8%)
Query: 30 HNHVQQIHMGVNFVCVHCKQFEVVPTRKTQTLEHCATCVDMVRPDASYTYMCYLCNYHTP 89
+ + +V + E + + Y L + +
Sbjct: 113 FTQLDFEVERAKMEDIMRLIERLVYGLFRKAEEWTGREFPKTKRFEVFEYSEVLEEFGSD 172
Query: 90 TRKYMRTHIDTHNGEKPFRCALCAYSARRKTHLDDHMRRHTGEKPHACGMCGYECAQGSQ 149
+ P + + E A G +
Sbjct: 173 EKASQEMEEPFWIINIPREFYDREVDGFWRNYDLILP------------YGYGEVASGGE 220
Query: 150 LMQHLRKVHKVDKKGGEEEEEEE 172
K+ +K G E+
Sbjct: 221 REWEYEKIVAKIRKAGLNEDSFR 243
>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 99
Score = 24.0 bits (52), Expect = 6.6
Identities = 8/36 (22%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
Query: 154 LRKV-HKVDKKGGEEEEEEEEEEEEEDNIEQEFLFE 188
L K ++ E+++E E I E E
Sbjct: 54 LEKAVEYLNYNLKYSGVSEDDDEIPEFEIPTEMSLE 89
>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId:
7227]}
Length = 54
Score = 23.2 bits (49), Expect = 8.0
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 128 RHTGEKPHACGMCGYECAQGSQLMQHLRKVH 158
R E+P C +C Q L +HL H
Sbjct: 18 RSQSEQPATCPICYAVIRQSRNLRRHLELRH 48
>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 22.1 bits (47), Expect = 8.7
Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 4/28 (14%)
Query: 104 EKPFRCALC----AYSARRKTHLDDHMR 127
EKPF C +C A S RK H H+R
Sbjct: 1 EKPFACDICGRKFARSDERKRHTKIHLR 28
>d1izma_ a.199.1.1 (A:) Hypothetical protein HI0817 {Haemophilus
influenzae [TaxId: 727]}
Length = 170
Score = 24.0 bits (52), Expect = 9.4
Identities = 8/43 (18%), Positives = 20/43 (46%), Gaps = 6/43 (13%)
Query: 145 AQGSQLMQHLRKVHKVDKKGGEEEEEEEEEEEEEDNIE-QEFL 186
+ + + L+ + ++ +E++ EEE E E E++
Sbjct: 121 GEIGEAVDDLQDICQLG-----YDEDDNEEELAEALEEIIEYV 158
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.134 0.434
Gapped
Lambda K H
0.267 0.0463 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 739,247
Number of extensions: 34573
Number of successful extensions: 360
Number of sequences better than 10.0: 1
Number of HSP's gapped: 333
Number of HSP's successfully gapped: 143
Length of query: 188
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 108
Effective length of database: 1,309,196
Effective search space: 141393168
Effective search space used: 141393168
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.7 bits)