BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13444
(129 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 43/88 (48%), Gaps = 7/88 (7%)
Query: 34 DNKLKCYHCKQVLSSSMDDLLFHSRKCAVVWRPGKSFNYVCCLCDYNVNGRTDMKRHLQT 93
+ KC C + S S +L H R +P Y C C + + +D+++H +T
Sbjct: 2 EKPYKCPECGKSFSQS-SNLQKHQR-THTGEKP-----YKCPECGKSFSQSSDLQKHQRT 54
Query: 94 HTGEKPYKCSHCGYETLRSHDLKRHMRI 121
HTGEKPYKC CG RS L RH R
Sbjct: 55 HTGEKPYKCPECGKSFSRSDHLSRHQRT 82
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 45/99 (45%), Gaps = 8/99 (8%)
Query: 24 SKICSAVNRPDNK-LKCYHCKQVLSSSMDDLLFHSRKCAVVWRPGKSFNYVCCLCDYNVN 82
S + A P K C C + S S D L H R +P Y C C + +
Sbjct: 8 SSVAQAALEPGEKPYACPECGKSFSRS-DHLAEHQR-THTGEKP-----YKCPECGKSFS 60
Query: 83 GRTDMKRHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ D+ RH +THTGEKPYKC CG + +L+ H R
Sbjct: 61 DKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRT 99
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 50/120 (41%), Gaps = 12/120 (10%)
Query: 2 KDVFCYHCNLTLPSSTEALILHSKICSAVNRPDNKLKCYHCKQVLSSSMDDLLFHSRKCA 61
K C C + S ++ L H + + + KC C + S DL H R
Sbjct: 20 KPYACPECGKSF-SRSDHLAEHQRTHTG----EKPYKCPECGKSFSD-KKDLTRHQR-TH 72
Query: 62 VVWRPGKSFNYVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+P Y C C + + R +++ H +THTGEKPY C CG + L+ H R
Sbjct: 73 TGEKP-----YKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRT 127
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 26/50 (52%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
Y C C + + ++ H +THTGEKPYKC CG R +L H R
Sbjct: 106 YACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRT 155
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 25/50 (50%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
Y C C + + ++ H +THTGEKPYKC CG R L H R
Sbjct: 134 YKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRT 183
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCSHCGYETLRSHDLKRHM 119
+ C +C R +++ H+ +HTGE PYKCS C + ++ DL+ HM
Sbjct: 67 FTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHM 114
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 87 MKRHLQTHTGEKPYKCSHCGYETLRSHDLKRH 118
+K H + HTGEKP++C CG R +L H
Sbjct: 23 LKVHNRKHTGEKPFECPKCGKCYFRKENLLEH 54
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 45.4 bits (106), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 31/52 (59%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRIKH 123
+ C +C N + + H++THTGEKP+ C CG + RS + KRH I+H
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH 55
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain
Of Zinc Finger Protein 435
Length = 77
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%)
Query: 64 WRPGKSFNYVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
W+ + Y C C + + +D+ +H +THTGEKPYKC CG ++ L H R+
Sbjct: 11 WQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRV 68
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
Length = 90
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ C +C N + + H++THTGEKP+ C CG + RS + KRH +I
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKI 84
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 72 YVCCL--CDYNVNGRTDMKRHLQTHTGEKPYKCSHCGYETLRSHDLKRHMR 120
Y C + CD + +++ RH++ HTG+KP++C C RS L H+R
Sbjct: 5 YACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 55
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ C +C N + + H++THTGEKP+ C CG + RS + KRH +I
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKI 84
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 72 YVCCL--CDYNVNGRTDMKRHLQTHTGEKPYKCSHCGYETLRSHDLKRHMR 120
Y C + CD + ++ RH++ HTG+KP++C C RS L H+R
Sbjct: 5 YACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 55
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
Length = 90
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ C +C N + + H++THTGEKP+ C CG + RS + KRH +I
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKI 84
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 72 YVCCL--CDYNVNGRTDMKRHLQTHTGEKPYKCSHCGYETLRSHDLKRHMR 120
Y C + CD + D+ RH++ HTG+KP++C C RS L H+R
Sbjct: 5 YACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 55
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ C +C N + + H++THTGEKP+ C CG + RS + KRH +I
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKI 84
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 72 YVCCL--CDYNVNGRTDMKRHLQTHTGEKPYKCSHCGYETLRSHDLKRHMR 120
Y C + CD + + RH++ HTG+KP++C C RS L H+R
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 55
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ C +C N + + H++THTGEKP+ C CG + RS + KRH +I
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKI 84
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 72 YVCCL--CDYNVNGRTDMKRHLQTHTGEKPYKCSHCGYETLRSHDLKRHMR 120
Y C + CD + ++ RH++ HTG+KP++C C RS L H+R
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 55
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
Length = 87
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ C +C N + + H++THTGEKP+ C CG + RS + KRH +I
Sbjct: 34 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKI 83
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 72 YVCCL--CDYNVNGRTDMKRHLQTHTGEKPYKCSHCGYETLRSHDLKRHMR 120
Y C + CD + ++ RH++ HTG+KP++C C RS L H+R
Sbjct: 4 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 54
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ C +C N + + H++THTGEKP+ C CG + RS + KRH +I
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKI 84
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 72 YVCCL--CDYNVNGRTDMKRHLQTHTGEKPYKCSHCGYETLRSHDLKRHMR 120
Y C + CD + ++ RH++ HTG+KP++C C RS L H+R
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 55
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 90
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 31/51 (60%), Gaps = 7/51 (13%)
Query: 77 CDYNVNGRT-----DMKRHLQTHTGEKPYKC--SHCGYETLRSHDLKRHMR 120
CDY G+T +K HL+THTGEKPY C CG++ RS +L RH R
Sbjct: 9 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYR 59
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 77 CDYNVNGRTDMKRHLQTHTGEKPYKCSHCGYETLRSHDLKRHMR 120
C + ++ RH + HTG +P++C C RS L HM+
Sbjct: 44 CGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMK 87
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
Length = 90
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ C +C N + T + +H++THTGEKP+ C CG + H RH +I
Sbjct: 35 FQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRKFATLHTRDRHTKI 84
Score = 33.5 bits (75), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 72 YVCCL--CDYNVNGRTDMKRHLQTHTGEKPYKCSHCGYETLRSHDLKRHMR 120
Y C + CD + +T++ H++ HTG+KP++C C + L +H+R
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIR 55
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 89
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 31/51 (60%), Gaps = 7/51 (13%)
Query: 77 CDYNVNGRT-----DMKRHLQTHTGEKPYKC--SHCGYETLRSHDLKRHMR 120
CDY G+T +K HL+THTGEKPY C CG++ RS +L RH R
Sbjct: 8 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYR 58
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 77 CDYNVNGRTDMKRHLQTHTGEKPYKCSHCGYETLRSHDLKRHMR 120
C + ++ RH + HTG +P++C C RS L HM+
Sbjct: 43 CGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMK 86
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 28/49 (57%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCSHCGYETLRSHDLKRHMR 120
Y C C + ++DMK+H HTGEKP+KC CG +S +L H R
Sbjct: 30 YPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSR 78
Score = 32.7 bits (73), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 26/51 (50%)
Query: 71 NYVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
++ C +C + + + HL H+ +PY C +CG + D+K+H I
Sbjct: 1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFI 51
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%)
Query: 67 GKSFNYVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
G S + C +C + + +K H++ HTG KPYKC C Y S L +H+RI
Sbjct: 4 GSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRI 58
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Query: 38 KCYHCKQVLSSSMDDLLFHSRKCAVVWRPGKSFNYVCCLCDYNVNGRTDMKRHLQTHTGE 97
KC C + S D L H R C +P Y C CDY + + +HL+ H+ E
Sbjct: 10 KCEVCGKCFSR-KDKLKTHMR-CHTGVKP-----YKCKTCDYAAADSSSLNKHLRIHSDE 62
Query: 98 KPYKCSHCGYETLRSHDLKRHMR 120
+P+KC C Y + S L H+R
Sbjct: 63 RPFKCQICPYASRNSSQLTVHLR 85
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 28/50 (56%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
Y C C + + ++ H HTGEKPY+C+ CG + R +LK H RI
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRI 67
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKP 99
Y C +C N ++K H + H+GEKP
Sbjct: 46 YRCNICGAQFNRPANLKTHTRIHSGEKP 73
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ C +C N + + + H++THTGEKP+ C CG + H RH +I
Sbjct: 35 FQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRKFATLHTRTRHTKI 84
Score = 34.3 bits (77), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 72 YVCCL--CDYNVNGRTDMKRHLQTHTGEKPYKCSHCGYETLRSHDLKRHMR 120
Y C + CD + +T++ H++ HTG+KP++C C + L H+R
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIR 55
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 25/51 (49%)
Query: 74 CCLCDYNVNGRTDMKRHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRIKHK 124
C C + HL+THTGEKPYKC C Y + L+ H+ HK
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHHK 57
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 25/36 (69%), Gaps = 2/36 (5%)
Query: 87 MKRHLQTHTGEKPYKCS--HCGYETLRSHDLKRHMR 120
+K HL+THTGEKPYKC+ C + RS +L RH R
Sbjct: 33 LKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYR 68
Score = 34.3 bits (77), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 77 CDYNVNGRTDMKRHLQTHTGEKPYKCSHCGYETLRSHDLKRHMR 120
CD+ ++ RH + HTG KP++C C RS L HM+
Sbjct: 53 CDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMK 96
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Zinc Finger Protein 24
Length = 72
Score = 38.9 bits (89), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
Y C C + + + +H + HTGEKPYKC CG ++ L H RI
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRI 64
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 97 EKPYKCSHCGYETLRSHDLKRHMRI 121
EKPY C CG RS L +H R+
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRV 36
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double Cys2His2
Zinc Finger From The Human Enhancer Binding Protein
Mbp-1
Length = 57
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 29/51 (56%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRIK 122
Y+C C + +K+H++THT +PY C++C + +L +HM+ K
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%)
Query: 71 NYVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRIKH 123
++VC +C + +KRH ++HT EKPY C C R L RH + H
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCSH--CGYETLRSHDLKRHMRI 121
+VC C + +KRH HTGEKP++C+ CG +L+ H+RI
Sbjct: 35 HVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRI 86
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 85 TDMKRHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ M++HL TH G + + C+ CG + S LKRH +
Sbjct: 21 SAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLV 56
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 86 DMKRHLQTHTGEKPYKCSH--CGYETLRSHDLKRHM 119
+++ H++ HTG++PY C C + +S +LK H+
Sbjct: 79 NLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHI 114
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
Length = 73
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 72 YVCCL--CDYNVNGRTDMKRHLQTHTGEKPYKCSHCGYETLRSHDLKRHMR 120
Y C + CD + ++ RH++ HTG+KP++C C RS L H+R
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 70
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domains
From Human Krueppel-Like Factor 10
Length = 72
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 87 MKRHLQTHTGEKPYKCSHCGYET--LRSHDLKRHMRI 121
+K H +THTGEKP+ CS G E RS +L RH R
Sbjct: 35 LKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRT 71
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 34.3 bits (77), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 26/60 (43%)
Query: 69 SFNYVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRIKHKIVGK 128
S C +C + RH +H+GEKPY C CG R + H+R VGK
Sbjct: 5 SSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGK 64
Score = 29.6 bits (65), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGE--KPYKCSHCGYETLRSHDLKRHMRIKH 123
Y C +C + M H+++H G KPY C CG R L H++ H
Sbjct: 36 YSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVH 89
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
Of Human Zinc Finger Protein 297b
Length = 110
Score = 34.3 bits (77), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 23/47 (48%)
Query: 75 CLCDYNVNGRTDMKRHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
C C + ++ RH+ H G +PY C CG + H L HM+I
Sbjct: 13 CQCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKI 59
Score = 29.6 bits (65), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 23/48 (47%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCSHCGYETLRSHDLKRHM 119
Y C +C + + H++ HTG KPY+C+ C + RH+
Sbjct: 38 YGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHV 85
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 34.3 bits (77), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 24/45 (53%)
Query: 77 CDYNVNGRTDMKRHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
C+ + +KRH + HTG KP++C C + RS LK H R
Sbjct: 44 CERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRT 88
Score = 33.1 bits (74), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 9/79 (11%)
Query: 42 CKQVLSSSMDDLLFHSRKCAVVWRPGKSFNYVCCLCDYNVNGRTDMKRHLQTHTGEKPYK 101
C++ S S D L H R+ V +P + C C + +K H +THTGEKP+
Sbjct: 44 CERRFSRS-DQLKRHQRRHTGV-KP-----FQCKTCQRKFSRSDHLKTHTRTHTGEKPFS 96
Query: 102 C--SHCGYETLRSHDLKRH 118
C C + RS +L RH
Sbjct: 97 CRWPSCQKKFARSDELVRH 115
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 87 MKRHLQTHTGEKPYKCSH--CGYETLRSHDLKRHMR 120
++ H + HTGEKPY+C C RS LKRH R
Sbjct: 24 LQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQR 59
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 33.5 bits (75), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 86 DMKRHLQTHTGEKPYKCSH--CGYETLRSHDLKRHMRI 121
++K H +THTGEKP+KC C S D K+HM +
Sbjct: 107 NLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHV 144
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 90 HLQTHTGEKPYKCSH--CGYETLRSHDLKRHMRI 121
H++ HTGEKP+ C CG RS +LK H R
Sbjct: 81 HIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRT 114
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 32.7 bits (73), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 17/21 (80%)
Query: 86 DMKRHLQTHTGEKPYKCSHCG 106
++K HL++HTGEKPY C H G
Sbjct: 84 NLKTHLRSHTGEKPYMCEHEG 104
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 90 HLQTHTGEKPYKCSH--CGYETLRSHDLKRHMR 120
H++ HTGEKP+KC+ C R +LK H+R
Sbjct: 58 HMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLR 90
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 32.0 bits (71), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 8/53 (15%)
Query: 72 YVCCLCD----YNVNGRTDMKRHLQTHTGEKPYKCSHCGYETLRS--HDLKRH 118
Y+C D YN N + ++ HL HTGEKP+ C G E + H L RH
Sbjct: 4 YICSFADCGAAYNKNWK--LQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRH 54
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Transcriptional Repressor Ctcf
Length = 86
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Query: 92 QTHTGEKPYKCSHCGYETLRSHDL 115
+THTGEKPY CSHC +T R L
Sbjct: 8 RTHTGEKPYACSHCD-KTFRQKQL 30
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKP 99
Y+C +C R+++ +H + HTGEKP
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHTGEKP 40
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 31.2 bits (69), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 97 EKPYKCSHCGYETLRSHDLKRHMRI 121
EKPYKC+ CG ++ L RH RI
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRI 34
Score = 26.2 bits (56), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKP 99
Y C C + + + RH + HTGEKP
Sbjct: 13 YKCNECGKAFSQTSKLARHQRIHTGEKP 40
>pdb|1X5W|A Chain A, Solution Structure Of The C2h2 Type Zinc-Binding Domain Of
Human Zinc Finger Protein 64, Isoforms 1 And 2
Length = 70
Score = 30.4 bits (67), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 11/40 (27%), Positives = 26/40 (65%)
Query: 84 RTDMKRHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRIKH 123
+ ++ H + H ++P+KC++C ++T + +L +HM+ H
Sbjct: 22 KAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFH 61
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 30.4 bits (67), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
Query: 52 DLLFHSRKCAVVWRPGKSFNYVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCSHCGYETLR 111
+LL H R RP Y C +C + ++ H H+ EKP+KC CG +
Sbjct: 32 NLLIHERT-HTDERP-----YTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQ 85
Query: 112 SHDLKRH 118
S L H
Sbjct: 86 SRTLAVH 92
Score = 28.9 bits (63), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 23/51 (45%)
Query: 71 NYVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
++C C + ++ H +THT E+PY C C R L+ H I
Sbjct: 17 EFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYI 67
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 30.4 bits (67), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCSHC 105
Y+C +C + T ++RH H+ EK Y C +C
Sbjct: 23 YICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYC 56
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 30.0 bits (66), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 12/50 (24%), Positives = 22/50 (44%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ C C + + RH + H G +P C CG ++ RH+++
Sbjct: 5 FFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKV 54
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 29.6 bits (65), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 8/53 (15%)
Query: 72 YVCCLCD----YNVNGRTDMKRHLQTHTGEKPYKCSHCGYETLRS--HDLKRH 118
Y+C D YN N + ++ HL HTGEKP+ C G E + H L RH
Sbjct: 13 YICSFADCGAAYNKNWK--LQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRH 63
>pdb|2EPQ|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 45
Score = 29.3 bits (64), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 18/35 (51%)
Query: 95 TGEKPYKCSHCGYETLRSHDLKRHMRIKHKIVGKS 129
+GEKPY C CG R + H+R VGKS
Sbjct: 6 SGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKS 40
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 29.3 bits (64), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 72 YVCCLCDYNVNGRTDMKRH-LQTHTGE-KPYKCSHCGYETLRSHDLKRHMRIKHKIVGKS 129
Y C +C MK H LQ HT + C HC R DL H+R +H G S
Sbjct: 16 YECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSGPS 75
Score = 28.9 bits (63), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 92 QTHTGEKPYKCSHCGYETLRSHDLKRHMRIKH 123
+TH+GEKPY+C C +S +K H+ KH
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKH 39
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 28.9 bits (63), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 97 EKPYKCSHCGYETLRSHDLKRHMRI 121
EKPY+C CG + +L +H RI
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRI 34
>pdb|2M0F|A Chain A, Solution Structure Of Miz-1 Zinc Finger 7
Length = 29
Score = 28.9 bits (63), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 99 PYKCSHCGYETLRSHDLKRHMRI 121
P KC CG + S +LKRH+RI
Sbjct: 2 PLKCRECGKQFTTSGNLKRHLRI 24
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
603- 635) Of Human Zinc Finger Protein 484
Length = 46
Score = 28.9 bits (63), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKP 99
Y C +C + ++ + H Q HTGEKP
Sbjct: 13 YECSICGKSFTKKSQLHVHQQIHTGEKP 40
>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
859- 889) Of Human Zinc Finger Protein 268
Length = 44
Score = 28.9 bits (63), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 93 THTGEKPYKCSHCGYETLRSHDLKRHMRIKHKIVGKS 129
+ T EKPY+CS CG +R+ L H R G S
Sbjct: 6 SGTREKPYECSECGKAFIRNSQLIVHQRTHSGESGPS 42
>pdb|2EQW|A Chain A, Solution Structure Of The 6th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 484
Length = 42
Score = 28.5 bits (62), Expect = 1.0, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 95 TGEKPYKCSHCGYETLRSHDLKRHMRI 121
+GEKPY C+ CG +R H RI
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERI 32
>pdb|3E7P|A Chain A, Crystal Structure Of Of Putative Methyltransferase From
Bacteroides Vulgatus Atcc 8482
Length = 270
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/59 (22%), Positives = 22/59 (37%)
Query: 13 LPSSTEALILHSKICSAVNRPDNKLKCYHCKQVLSSSMDDLLFHSRKCAVVWRPGKSFN 71
+P + N+ KL + + + SMDDL F ++W G +N
Sbjct: 69 VPGKITGIDFFPGFIERFNKNAEKLNLQNRVKGIVGSMDDLSFEKDSLDLIWSEGAIYN 127
>pdb|3T7R|A Chain A, Crystal Structure Of Apo Bvu_3255, A Methyltransferase
From Bacteroides Vulgatus Atcc 8482
pdb|3T7R|B Chain B, Crystal Structure Of Apo Bvu_3255, A Methyltransferase
From Bacteroides Vulgatus Atcc 8482
pdb|3T7S|A Chain A, Crystal Structure Of Complex Of Sam And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7S|B Chain B, Crystal Structure Of Complex Of Sam And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7S|C Chain C, Crystal Structure Of Complex Of Sam And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7S|D Chain D, Crystal Structure Of Complex Of Sam And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7T|A Chain A, Crystal Structure Of Complex Of Sah And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7T|B Chain B, Crystal Structure Of Complex Of Sah And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7T|C Chain C, Crystal Structure Of Complex Of Sah And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7T|D Chain D, Crystal Structure Of Complex Of Sah And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
Length = 268
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/59 (22%), Positives = 22/59 (37%)
Query: 13 LPSSTEALILHSKICSAVNRPDNKLKCYHCKQVLSSSMDDLLFHSRKCAVVWRPGKSFN 71
+P + N+ KL + + + SMDDL F ++W G +N
Sbjct: 74 VPGKITGIDFFPGFIERFNKNAEKLNLQNRVKGIVGSMDDLSFEKDSLDLIWSEGAIYN 132
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 97 EKPYKCSHCGYETLRSHDLKRHMRI 121
EKPYKC+ CG ++ L RH R+
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRV 34
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKP 99
Y C +C + + +H +THTGEKP
Sbjct: 13 YECKVCSKAFTQKAHLAQHQKTHTGEKP 40
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 97 EKPYKCSHCGYETLRSHDLKRHMRI 121
EKPY C +CG S +L RH RI
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRI 34
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKP 99
YVC C ++ RH + HTGEKP
Sbjct: 13 YVCDYCGKAFGLSAELVRHQRIHTGEKP 40
>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
607- 639) Of Human Zinc Finger Protein 268
Length = 46
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKP 99
+ C C N ++++ H +THTGEKP
Sbjct: 13 FECSECQKAFNTKSNLIVHQRTHTGEKP 40
>pdb|2EP1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
435- 467) Of Human Zinc Finger Protein 484
Length = 46
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 97 EKPYKCSHCGYETLRSHDLKRHMRI 121
EKPY+CS CG ++ L H RI
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRI 34
>pdb|3MK4|A Chain A, X-Ray Structure Of Human Pex3 In Complex With A Pex19
Derived Peptide
Length = 334
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 30/47 (63%), Gaps = 8/47 (17%)
Query: 9 CNLT----LPSSTEALI--LHSKICSAV--NRPDNKLKCYHCKQVLS 47
CN+T LP+ EAL+ L+S+ +A+ NRP NKL+ + +++S
Sbjct: 26 CNMTVLSMLPTLREALMQQLNSESLTALLKNRPSNKLEIWEDLKIIS 72
>pdb|2EM8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
423- 455) Of Human Zinc Finger Protein 224
Length = 46
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 97 EKPYKCSHCGYETLRSHDLKRHMRI 121
EKPYKC CG R DL H R+
Sbjct: 10 EKPYKCVECGKGYKRRLDLDFHQRV 34
>pdb|2EL5|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 42
Score = 28.1 bits (61), Expect = 1.4, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 95 TGEKPYKCSHCGYETLRSHDLKRHMR 120
+GE PY+CS CG R L H R
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQR 31
>pdb|3AJB|A Chain A, Crystal Structure Of Human Pex3p In Complex With
N-Terminal Pex19p Peptide
Length = 330
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 30/47 (63%), Gaps = 8/47 (17%)
Query: 9 CNLT----LPSSTEALI--LHSKICSAV--NRPDNKLKCYHCKQVLS 47
CN+T LP+ EAL+ L+S+ +A+ NRP NKL+ + +++S
Sbjct: 22 CNMTVLSMLPTLREALMQQLNSESLTALLKNRPSNKLEIWEDLKIIS 68
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKP 99
Y+C C + ++ + RH + HTGEKP
Sbjct: 13 YICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 97 EKPYKCSHCGYETLRSHDLKRHMRI 121
EKPY C+ CG ++ L RH RI
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRI 34
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
508- 540) Of Human Zinc Finger Protein 347
Length = 46
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 97 EKPYKCSHCGYETLRSHDLKRHMRI 121
EKPYKC+ CG ++ L H RI
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRI 34
>pdb|2YTD|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
426- 458) Of Human Zinc Finger Protein 473
Length = 46
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 14/25 (56%)
Query: 97 EKPYKCSHCGYETLRSHDLKRHMRI 121
EKPYKCS CG R L H RI
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRI 34
>pdb|5ZNF|A Chain A, Alternating Zinc Fingers In The Human Male Associated
Protein Zfy: 2d Nmr Structure Of An Even Finger And
Implications For "jumping-Linker" Dna Recognition
Length = 30
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 98 KPYKCSHCGYETLRSHDLKRHMRIKH 123
K Y+C +C Y + S +LK H++ KH
Sbjct: 1 KTYQCQYCEYRSADSSNLKTHIKTKH 26
>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
255- 287) Of Human Zinc Finger Protein 224
Length = 46
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 97 EKPYKCSHCGYETLRSHDLKRHMRI 121
EKPY C CG + L+ H RI
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRI 34
>pdb|2ELQ|A Chain A, Solution Structure Of The 14th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 67 GKSFNYVCCLCDYNVNGRTDMKRHLQTHTGEK 98
GK F C LC+Y ++++K H+ H+ EK
Sbjct: 7 GKPFK--CSLCEYATRSKSNLKAHMNRHSTEK 36
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 98 KPYKCSHCGYETLRSHDLKRHM 119
KP+KCS C Y T +LK HM
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHM 29
>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
809- 841) Of Human Zinc Finger Protein 473
Length = 46
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 97 EKPYKCSHCGYETLRSHDLKRHMRI 121
EKPY C+ CG + S L +H+R+
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRV 34
>pdb|2EOQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
283- 315) Of Human Zinc Finger Protein 224
Length = 46
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKP 99
+ C +C + GR+ + RH HT EKP
Sbjct: 13 FKCDICGKSFCGRSRLNRHSMVHTAEKP 40
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 98 KPYKCSHCGYETLRSHDLKRHMRI 121
KPY+C+ CG ++ L RH R+
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRV 34
Score = 26.6 bits (57), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKP 99
Y C C + + + RH + HTGEKP
Sbjct: 13 YQCNECGKAFSQTSKLARHQRVHTGEKP 40
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 97 EKPYKCSHCGYETLRSHDLKRHMRI 121
EKPYKC+ CG ++ L H RI
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRI 34
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 97 EKPYKCSHCGYETLRSHDLKRHMRI 121
EKPYKC+ CG + L RH RI
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRI 34
>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
369- 401) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKP 99
+ C C + N R + +H + HTGEKP
Sbjct: 13 FKCGECGKSYNQRVHLTQHQRVHTGEKP 40
>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
544- 576) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 97 EKPYKCSHCGYETLRSHDLKRHMRI 121
E+P+KC+ CG ++S L +H RI
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRI 34
>pdb|1W36|D Chain D, Recbcd:dna Complex
pdb|1W36|G Chain G, Recbcd:dna Complex
pdb|3K70|D Chain D, Crystal Structure Of The Complete Initiation Complex Of
Recbcd
pdb|3K70|G Chain G, Crystal Structure Of The Complete Initiation Complex Of
Recbcd
Length = 608
Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats.
Identities = 12/43 (27%), Positives = 23/43 (53%)
Query: 8 HCNLTLPSSTEALILHSKICSAVNRPDNKLKCYHCKQVLSSSM 50
H L LPS ++ + +AV R +L Y +++LS+++
Sbjct: 548 HAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAI 590
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKP 99
+ C CD + R+ + H HTGEKP
Sbjct: 13 FRCDTCDKSFRQRSALNSHRMIHTGEKP 40
>pdb|2DLC|X Chain X, Crystal Structure Of The Ternary Complex Of Yeast
Tyrosyl-Trna Synthetase
Length = 394
Score = 26.9 bits (58), Expect = 3.3, Method: Composition-based stats.
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 88 KRHLQTHTGEKPYKCSHCGY 107
KRHL+ + G P HCGY
Sbjct: 37 KRHLKLYWGTAPTGRPHCGY 56
>pdb|1KLR|A Chain A, Nmr Structure Of The Zfy-6t[y10f] Zinc Finger
Length = 30
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 98 KPYKCSHCGYETLRSHDLKRHMRIKH 123
K Y+C +C + + S +LK H++ KH
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIKTKH 26
>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
612- 644) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 97 EKPYKCSHCGYETLRSHDLKRHMRI 121
EKP++C+ CG S L H RI
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRI 34
>pdb|2ELZ|A Chain A, Solution Structure Of The 17th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 97 EKPYKCSHCGYETLRSHDLKRHMRI 121
EKPYKC CG R +L H R+
Sbjct: 10 EKPYKCEDCGKGYNRRLNLDMHQRV 34
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 26.6 bits (57), Expect = 3.8, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 95 TGEKPYKCSHCGYETLRSHDLKRHMRI 121
+GEKPY+C CG + L H R+
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERL 32
>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
693- 723) Of Human Zinc Finger Protein 268
Length = 44
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKP 99
Y C C ++ + H++THTGEKP
Sbjct: 11 YGCSECGKAFRSKSYLIIHMRTHTGEKP 38
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
368- 400) Of Human Zinc Finger Protein 347
Length = 46
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKP 99
Y C C R+ + H TH+GEKP
Sbjct: 13 YKCNECGKAFRARSSLAIHQATHSGEKP 40
>pdb|2EOK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
441- 469) Of Human Zinc Finger Protein 268
Length = 42
Score = 26.6 bits (57), Expect = 3.8, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 16/35 (45%)
Query: 95 TGEKPYKCSHCGYETLRSHDLKRHMRIKHKIVGKS 129
+GEKPY CS CG L H I + G S
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIHTGVSGPS 40
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
631- 663) Of Human Zinc Finger Protein 484
Length = 46
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKP 99
Y C C R+++ H + HTGEKP
Sbjct: 13 YRCAECGKAFTDRSNLFTHQKIHTGEKP 40
>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
Zinc Finger Protein 473
Length = 42
Score = 26.6 bits (57), Expect = 4.3, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 95 TGEKPYKCSHCGYETLRSHDLKRHMRI 121
+GEKPY C CG +S L H R+
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRV 32
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 26.6 bits (57), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKP 99
Y C C + ++ + H +THTGEKP
Sbjct: 13 YGCNECGKTFSQKSILSAHQRTHTGEKP 40
>pdb|2ENT|A Chain A, Solution Structure Of The Second C2h2-Type Zinc Finger
Domain From Human Krueppel-Like Factor 15
Length = 48
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 97 EKPYKCS--HCGYETLRSHDLKRHMR 120
EKP+ C+ CG+ RS +L RH R
Sbjct: 10 EKPFACTWPGCGWRFSRSDELSRHRR 35
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
564- 596) Of Human Zinc Finger Protein 347
Length = 46
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 97 EKPYKCSHCGYETLRSHDLKRHMRI 121
EKPYKC+ CG ++ L RH I
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGI 34
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 97 EKPYKCSHCGYETLRSHDLKRHMRI 121
EKP+KC CG ++ L H R+
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRV 34
>pdb|2EQ0|A Chain A, Solution Structure Of The 8th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 97 EKPYKCSHCGYETLRSHDLKRHMRI 121
EKPYKC CG R+ L RH I
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLI 34
>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 45
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 97 EKPYKCSHCGYETLRSHDLKRHMRI 121
+KP++C+HCG +L H RI
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQRI 34
>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
775- 807) Of Human Zinc Finger Protein 268
Length = 46
Score = 26.2 bits (56), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKP 99
Y C C + ++ + H++TH+GEKP
Sbjct: 13 YGCSECGKAFSSKSYLIIHMRTHSGEKP 40
>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
301- 331) Of Human Zinc Finger Protein 268
Length = 44
Score = 25.8 bits (55), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 95 TGEKPYKCSHCGYETLRSHDLKRHMRI 121
+GEKPY C+ CG + L H RI
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRI 32
>pdb|2EPX|A Chain A, Solution Structure Of The Third C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 28 Homolog
Length = 47
Score = 25.8 bits (55), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 97 EKPYKCSHCGYETLRSHDLKRHMRIKH 123
+KPY+C CG +++ L RH R H
Sbjct: 10 KKPYECIECGKAFIQNTSLIRHWRYYH 36
>pdb|2EOS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
626- 654) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 25.8 bits (55), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 13/25 (52%)
Query: 97 EKPYKCSHCGYETLRSHDLKRHMRI 121
EKPY C CG LK H+RI
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLRI 33
>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
584- 616) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 25.8 bits (55), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 97 EKPYKCSHCGYETLRSHDLKRHMRI 121
EKP+KC CG ++ L H+RI
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRI 34
>pdb|2ELT|A Chain A, Solution Structure Of The 3rd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 25.8 bits (55), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEK 98
Y C C Y + ++ HL+ HTGEK
Sbjct: 10 YKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 25.8 bits (55), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 98 KPYKCSHCGYETLRSHDLKRHMR 120
KPYKC C Y + +L H+R
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLR 30
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
Zinc Finger Protein 32
Length = 42
Score = 25.8 bits (55), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 97 EKPYKCSHCGYETLRSHDLKRHMRI 121
EKPY+C CG + L H+R+
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRV 33
>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
340- 372) Of Human Zinc Finger Protein 347
Length = 46
Score = 25.4 bits (54), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 97 EKPYKCSHCGYETLRSHDLKRHMRI 121
EKPYKC+ CG ++ L RH I
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGI 34
>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
581- 609) Of Human Zinc Finger Protein 268
Length = 42
Score = 25.4 bits (54), Expect = 8.1, Method: Composition-based stats.
Identities = 8/12 (66%), Positives = 11/12 (91%)
Query: 95 TGEKPYKCSHCG 106
+GEKPY+C+ CG
Sbjct: 6 SGEKPYECTDCG 17
>pdb|2EN2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
598- 626) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 25.4 bits (54), Expect = 8.5, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 97 EKPYKCSHCGYETLRSHDLKRHMRI 121
EKPYKC CG ++ L+ H+ I
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHVLI 33
>pdb|2EMZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
628- 660) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 25.4 bits (54), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 97 EKPYKCSHCGYETLRSHDLKRHMRI 121
E+P+KC+ CG R L H+R+
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRL 34
>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
507- 539) Of Human Zinc Finger Protein 224
Length = 46
Score = 25.4 bits (54), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKP 99
Y C C N + ++ H + HTGE+P
Sbjct: 13 YKCEKCGKGYNSKFNLDMHQKVHTGERP 40
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 25.4 bits (54), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 13/25 (52%)
Query: 97 EKPYKCSHCGYETLRSHDLKRHMRI 121
EKPY+CS CG L H RI
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRI 34
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.136 0.456
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,982,372
Number of Sequences: 62578
Number of extensions: 144746
Number of successful extensions: 689
Number of sequences better than 100.0: 176
Number of HSP's better than 100.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 367
Number of HSP's gapped (non-prelim): 332
length of query: 129
length of database: 14,973,337
effective HSP length: 88
effective length of query: 41
effective length of database: 9,466,473
effective search space: 388125393
effective search space used: 388125393
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)