RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13444
(129 letters)
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 59.4 bits (145), Expect = 3e-13
Identities = 13/50 (26%), Positives = 30/50 (60%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
C C Y+ + + ++ H + H ++P+KC++C ++T + +L +HM+
Sbjct: 10 EKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKK 59
Score = 50.6 bits (122), Expect = 8e-10
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 93 THTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ + P KCS C Y L+ H RI
Sbjct: 3 SGSSGHPEKCSECSYSCSSKAALRIHERI 31
Score = 32.9 bits (76), Expect = 0.004
Identities = 5/32 (15%), Positives = 15/32 (46%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCS 103
+ C C ++ +++ +H++ G+ S
Sbjct: 38 FKCNYCSFDTKQPSNLSKHMKKFHGDMSGPSS 69
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 53.7 bits (130), Expect = 6e-11
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 88 KRHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRIKH 123
+TH+GEKPY+C C +S +K H+ KH
Sbjct: 4 GSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKH 39
Score = 52.1 bits (126), Expect = 2e-10
Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGE--KPYKCSHCGYETLRSHDLKRHMRIKH 123
Y C +C MK H+ E + C HC R DL H+R +H
Sbjct: 16 YECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQH 69
Score = 30.6 bits (70), Expect = 0.029
Identities = 8/30 (26%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQT-HTGEKPY 100
+ C CD + ++D+ HL+ H+ P
Sbjct: 46 FHCPHCDTVIARKSDLGVHLRKQHSYSGPS 75
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 52.9 bits (128), Expect = 1e-10
Identities = 20/50 (40%), Positives = 29/50 (58%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ C +C N + + H++THTGEKP+ C CG + RS + KRH I
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDI 53
Score = 38.2 bits (90), Expect = 5e-05
Identities = 7/49 (14%), Positives = 15/49 (30%), Gaps = 1/49 (2%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCSHCGYETLRSHDLKRHMR 120
+ C +C + KRH P +++ L+ +
Sbjct: 32 FACDICGRKFARSDERKRHRDIQH-ILPILEDKVEELLSKNYHLENEVA 79
Score = 32.1 bits (74), Expect = 0.010
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 98 KPYKCSHCGYETLRSHDLKRHMRI 121
KP++C C RS L H+R
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRT 25
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 52.2 bits (126), Expect = 1e-10
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQT--HTGEKPYKCSHCGYETLRSHDLKRHMRIKHKI 125
Y C +C ++ RH T K Y C C E R ++ H++I HKI
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHKI 66
Score = 44.9 bits (107), Expect = 1e-07
Identities = 9/31 (29%), Positives = 11/31 (35%)
Query: 93 THTGEKPYKCSHCGYETLRSHDLKRHMRIKH 123
T GE Y+C C + RH H
Sbjct: 4 TKEGEHTYRCKVCSRVYTHISNFCRHYVTSH 34
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 51.3 bits (123), Expect = 5e-10
Identities = 9/55 (16%), Positives = 17/55 (30%), Gaps = 3/55 (5%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHT---GEKPYKCSHCGYETLRSHDLKRHMRIKH 123
C +C + + + H + H + C CG + + H H
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSH 62
Score = 42.4 bits (100), Expect = 1e-06
Identities = 7/28 (25%), Positives = 11/28 (39%)
Query: 94 HTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+G +C CG+ + L H R
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRK 29
Score = 25.1 bits (55), Expect = 4.1
Identities = 3/34 (8%), Positives = 5/34 (14%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCSHC 105
+ C C + H
Sbjct: 39 FPCEFCGKRFEKPDSVAAHRSKSHPALLLAPQES 72
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 51.3 bits (124), Expect = 5e-10
Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ C +C N + + H++THTGEKP+ C CG + RS + KRH +I
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKI 84
Score = 31.3 bits (72), Expect = 0.021
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 97 EKPYKC--SHCGYETLRSHDLKRHMRI 121
E+PY C C +S L RH+RI
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRI 28
Score = 25.1 bits (56), Expect = 4.5
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEK 98
+ C +C + KRH + H +K
Sbjct: 63 FACDICGRKFARSDERKRHTKIHLRQK 89
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 50.5 bits (122), Expect = 1e-09
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ C +C + + +K H++ HTG KPYKC C Y S L +H+RI
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRI 58
Score = 50.1 bits (121), Expect = 2e-09
Identities = 18/50 (36%), Positives = 27/50 (54%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
Y C CDY + + +HL+ H+ E+P+KC C Y + S L H+R
Sbjct: 37 YKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRS 86
Score = 45.1 bits (108), Expect = 2e-07
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 93 THTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ P+KC CG R LK HMR
Sbjct: 2 SSGSSGPHKCEVCGKCFSRKDKLKTHMRC 30
Score = 35.5 bits (83), Expect = 8e-04
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKC 102
+ C +C Y + + HL++HTG+
Sbjct: 65 FKCQICPYASRNSSQLTVHLRSHTGDSGPSS 95
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 48.6 bits (117), Expect = 2e-09
Identities = 13/32 (40%), Positives = 15/32 (46%)
Query: 90 HLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ GEKPY C CG LK H+RI
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRI 33
Score = 32.1 bits (74), Expect = 0.005
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPY 100
Y C +C +K HL+ HTG P
Sbjct: 12 YPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 50.6 bits (122), Expect = 2e-09
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 88 KRHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
KRH + HTG KP++C C + RS LK H R
Sbjct: 55 KRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRT 88
Score = 47.1 bits (113), Expect = 4e-08
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCS--HCGYETLRSHDLKRHMRI 121
+ C C + +K H +THTGEKP+ C C + RS +L RH +
Sbjct: 67 FQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNM 118
Score = 46.4 bits (111), Expect = 9e-08
Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 13/57 (22%)
Query: 67 GKSFNYVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCS--HCGYETLRSHDLKRHMRI 121
K + + L + H + HTGEKPY+C C RS LKRH R
Sbjct: 15 NKRYFKLSHL-----------QMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRR 60
Score = 36.3 bits (85), Expect = 5e-04
Identities = 6/29 (20%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 95 TGEKPYKCSH--CGYETLRSHDLKRHMRI 121
+ ++P+ C++ C + L+ H R
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRK 30
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 48.3 bits (116), Expect = 2e-09
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 90 HLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ GEKPYKC CG ++ L+ H+ I
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLI 33
Score = 30.2 bits (69), Expect = 0.022
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPY 100
Y C C ++ H+ HTG P
Sbjct: 12 YKCETCGARFVQVAHLRAHVLIHTGSGPS 40
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 48.8 bits (117), Expect = 4e-09
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 86 DMKRHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
++ RH++ HTG+KP++C C RS L H+R
Sbjct: 36 ELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT 71
Score = 36.5 bits (85), Expect = 2e-04
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 4/36 (11%)
Query: 90 HLQTH--TGEKPYKCSH--CGYETLRSHDLKRHMRI 121
+L + +PY C C RS +L RH+RI
Sbjct: 8 NLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRI 43
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 47.4 bits (112), Expect = 1e-08
Identities = 15/50 (30%), Positives = 28/50 (56%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
Y+C C + +K+H++THT +PY C++C + +L +HM+
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
Score = 28.5 bits (63), Expect = 0.16
Identities = 5/27 (18%), Positives = 15/27 (55%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEK 98
Y C C+++ + ++ +H+++ K
Sbjct: 30 YHCTYCNFSFKTKGNLTKHMKSKAHSK 56
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 46.7 bits (112), Expect = 3e-08
Identities = 20/50 (40%), Positives = 28/50 (56%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
Y C C + + ++ H HTGEKPY+C+ CG + R +LK H RI
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRI 67
Score = 44.0 bits (105), Expect = 2e-07
Identities = 9/33 (27%), Positives = 12/33 (36%)
Query: 89 RHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
H +KPYKC C +L H +
Sbjct: 7 HHSHMTHSDKPYKCDRCQASFRYKGNLASHKTV 39
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 48.4 bits (116), Expect = 3e-08
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 7/57 (12%)
Query: 72 YVCCLCDYNVNGRT-----DMKRHLQTHTGEKPYKCSH--CGYETLRSHDLKRHMRI 121
+VC + R + H++ HTGEKP+KC+ C R +LK H+R
Sbjct: 35 FVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRS 91
Score = 41.4 bits (98), Expect = 1e-05
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 88 KRHLQTHTGEKPYKCSH--CGYETLRSHDLKRHMRIKH 123
K HL++HTGEKPY C H C + D +H H
Sbjct: 86 KTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTH 123
Score = 38.3 bits (90), Expect = 2e-04
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 86 DMKRHLQ-THTGEKPYKCSH--CGYETLRSHDLKRHMRI 121
D +H TH+ EKPY C C L++H++
Sbjct: 114 DRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKT 152
Score = 34.1 bits (79), Expect = 0.005
Identities = 6/27 (22%), Positives = 9/27 (33%)
Query: 97 EKPYKCSHCGYETLRSHDLKRHMRIKH 123
E + C E L H+ +H
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHINSEH 27
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 47.2 bits (113), Expect = 3e-08
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 86 DMKRHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
++ RH + HTG KP++C C RS L HM+
Sbjct: 62 ELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKR 97
Score = 44.9 bits (107), Expect = 2e-07
Identities = 20/36 (55%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Query: 88 KRHLQTHTGEKPYKCSH--CGYETLRSHDLKRHMRI 121
K HL+THTGEKPYKC+ C + RS +L RH R
Sbjct: 34 KAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRK 69
Score = 26.8 bits (60), Expect = 1.3
Identities = 8/40 (20%), Positives = 12/40 (30%), Gaps = 4/40 (10%)
Query: 82 NGRTDMKRHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ H + P C +S LK H+R
Sbjct: 4 GSSGPDLEKRRIHYCDYPG----CTKVYTKSSHLKAHLRT 39
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 46.3 bits (111), Expect = 5e-08
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 11/55 (20%)
Query: 67 GKSFNYVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
GK F V L RH +H+GEKPY C CG R + H+R
Sbjct: 14 GKIFRDVYHL-----------NRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRS 57
Score = 41.3 bits (98), Expect = 5e-06
Identities = 7/28 (25%), Positives = 9/28 (32%)
Query: 94 HTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+G C CG + L RH
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLS 29
Score = 39.4 bits (93), Expect = 2e-05
Identities = 16/59 (27%), Positives = 22/59 (37%), Gaps = 13/59 (22%)
Query: 67 GKSFNYVCCLCDYNVNGRTDMKRHLQTHTGE--KPYKCSHCGYETLRSHDLKRHMRIKH 123
G F + M H+++H G KPY C CG R L H++ H
Sbjct: 42 GLRFKR-----------KDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVH 89
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 46.3 bits (111), Expect = 7e-08
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 11/55 (20%)
Query: 67 GKSFNYVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
GKSF + ++ RH+ H G +PY C CG + H L HM+I
Sbjct: 16 GKSFTH-----------KSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKI 59
Score = 39.0 bits (92), Expect = 4e-05
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCSHCG 106
Y C +C + + H++ HTG KPY+C+ C
Sbjct: 38 YGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICA 72
Score = 37.8 bits (89), Expect = 1e-04
Identities = 9/29 (31%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 93 THTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+G+K Y C CG RHM +
Sbjct: 4 GSSGDKLYPC-QCGKSFTHKSQRDRHMSM 31
Score = 36.3 bits (85), Expect = 5e-04
Identities = 3/17 (17%), Positives = 6/17 (35%)
Query: 90 HLQTHTGEKPYKCSHCG 106
H + K Y+ +
Sbjct: 82 HRHVTSCTKSYEAAKAE 98
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 44.9 bits (107), Expect = 7e-08
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 90 HLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ TGEKP++C CG S L +H+R
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRS 34
Score = 36.0 bits (84), Expect = 1e-04
Identities = 9/38 (23%), Positives = 15/38 (39%), Gaps = 11/38 (28%)
Query: 67 GKSFNYVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCSH 104
G +F++ C L +HL++H P S
Sbjct: 19 GMNFSWSCSL-----------FKHLRSHERTDPSGPSS 45
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 45.6 bits (109), Expect = 9e-08
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 89 RHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+THTGEKPY CSHC + L H +
Sbjct: 5 SSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKR 37
Score = 43.3 bits (103), Expect = 7e-07
Identities = 12/54 (22%), Positives = 19/54 (35%), Gaps = 4/54 (7%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGE----KPYKCSHCGYETLRSHDLKRHMRI 121
Y C CD + + H + + + CS CG R + + RH
Sbjct: 16 YACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADN 69
Score = 41.4 bits (98), Expect = 3e-06
Identities = 9/35 (25%), Positives = 12/35 (34%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCSHCG 106
+VC C R M RH G + + G
Sbjct: 48 FVCSKCGKTFTRRNTMARHADNCAGPDGVEGENSG 82
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 44.6 bits (106), Expect = 9e-08
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 90 HLQTHTGEKPYKCSH--CGYETLRSHDLKRHMRI 121
+ TGEKP+ C+ CG+ RS +L RH R
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRS 36
Score = 32.7 bits (75), Expect = 0.003
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 88 KRHLQTHTGEKPYKCS 103
RH ++H+G KP S
Sbjct: 31 SRHRRSHSGVKPSGPS 46
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 45.6 bits (109), Expect = 1e-07
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 88 KRHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
RH + HTG +P++C C RS L HM+
Sbjct: 54 TRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKR 87
Score = 43.3 bits (103), Expect = 6e-07
Identities = 20/36 (55%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Query: 88 KRHLQTHTGEKPYKCSH--CGYETLRSHDLKRHMRI 121
K HL+THTGEKPY C CG++ RS +L RH R
Sbjct: 24 KAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRK 59
Score = 31.7 bits (73), Expect = 0.015
Identities = 8/28 (28%), Positives = 11/28 (39%)
Query: 94 HTGEKPYKCSHCGYETLRSHDLKRHMRI 121
T + CG +S LK H+R
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRT 29
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 45.1 bits (108), Expect = 1e-07
Identities = 21/50 (42%), Positives = 28/50 (56%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
Y C C + ++DMK+H HTGEKP+KC CG +S +L H R
Sbjct: 30 YPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRK 79
Score = 43.6 bits (104), Expect = 4e-07
Identities = 14/50 (28%), Positives = 25/50 (50%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ C +C + + + HL H+ +PY C +CG + D+K+H I
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFI 51
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 44.0 bits (105), Expect = 1e-07
Identities = 15/33 (45%), Positives = 17/33 (51%)
Query: 89 RHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ TGEKPYKC CG R+ L RH I
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLI 34
Score = 32.8 bits (76), Expect = 0.003
Identities = 12/32 (37%), Positives = 14/32 (43%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCS 103
Y C C + + RH HTGEKP S
Sbjct: 13 YKCHECGKVFRRNSHLARHQLIHTGEKPSGPS 44
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 44.0 bits (105), Expect = 1e-07
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 89 RHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ +GEKPY C +CG S +L RH RI
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRI 34
Score = 35.6 bits (83), Expect = 3e-04
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCSH 104
YVC C ++ RH + HTGEKP S
Sbjct: 13 YVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSS 45
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 44.0 bits (105), Expect = 1e-07
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 89 RHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ +GEKP+KC CG ++ L H+RI
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRI 34
Score = 32.9 bits (76), Expect = 0.003
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCS 103
+ C C + HL+ HTGEKP S
Sbjct: 13 FKCKECGKAFRQNIHLASHLRIHTGEKPSGPS 44
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 44.1 bits (105), Expect = 2e-07
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 89 RHLQTHTGEKPYKCSHCGYE-TLRSHDLKRHMRI 121
+ + K ++C CG TL+SH L +H RI
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSH-LNQHQRI 34
Score = 31.0 bits (71), Expect = 0.011
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCS 103
+ C C ++ + +H + HTGEKP S
Sbjct: 13 HQCHECGRGFTLKSHLNQHQRIHTGEKPSGPS 44
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 44.1 bits (105), Expect = 2e-07
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 89 RHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ TGEKPY C CG + L +H R+
Sbjct: 2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRV 34
Score = 32.2 bits (74), Expect = 0.005
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCS 103
Y C C + + + +H + H+GEKP S
Sbjct: 13 YNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 44.4 bits (106), Expect = 2e-07
Identities = 19/52 (36%), Positives = 26/52 (50%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRIKH 123
+VC +C + +KRH ++HT EKPY C C R L RH + H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 31.3 bits (72), Expect = 0.011
Identities = 8/24 (33%), Positives = 10/24 (41%)
Query: 98 KPYKCSHCGYETLRSHDLKRHMRI 121
+ + C C R LKRH R
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRS 24
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 43.6 bits (104), Expect = 2e-07
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 89 RHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ TGEKP++C+ CG S L H RI
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRI 34
Score = 34.8 bits (81), Expect = 5e-04
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCSH 104
+ C C + + + + H + HTGEKP S
Sbjct: 13 FECAECGKSFSISSQLATHQRIHTGEKPSGPSS 45
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 45.6 bits (109), Expect = 2e-07
Identities = 16/49 (32%), Positives = 22/49 (44%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCSHCGYETLRSHDLKRHMR 120
C C + +K H + HTGEKP++C CG R +L H
Sbjct: 8 VECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEA 56
Score = 45.6 bits (109), Expect = 2e-07
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 89 RHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ E+ + CS C R +L+ HM
Sbjct: 56 ARNCMNRSEQVFTCSVCQETFRRRMELRLHMVS 88
Score = 44.8 bits (107), Expect = 4e-07
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRIKH 123
+ C +C R +++ H+ +HTGE PYKCS C + ++ DL+ HM H
Sbjct: 67 FTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLH 118
Score = 42.9 bits (102), Expect = 2e-06
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 94 HTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+G +C C + L + LK H R
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRK 29
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 44.3 bits (105), Expect = 2e-07
Identities = 18/36 (50%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 88 KRHLQTHTGEKPYKCSH--CGYETLRSHDLKRHMRI 121
K H +THTGEKP+ CS C RS +L RH R
Sbjct: 36 KAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRT 71
Score = 33.9 bits (78), Expect = 0.002
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Query: 83 GRTDMKRHLQTHTGEKPYKCSH--CGYETLRSHDLKRHMRI 121
G + + + + CSH CG +S LK H R
Sbjct: 1 GSSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRT 41
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 43.7 bits (104), Expect = 2e-07
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 89 RHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ TGEKPY C CG + L+ H RI
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRI 34
Score = 32.5 bits (75), Expect = 0.004
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCS 103
Y C C + ++ H + HTGEKP S
Sbjct: 13 YNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS 44
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 45.6 bits (109), Expect = 2e-07
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCSH--CGYETLRSHDLKRHMRI 121
+VC C + +KRH HTGEKP++C+ CG +L+ H+RI
Sbjct: 35 HVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRI 86
Score = 43.3 bits (103), Expect = 2e-06
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 13/57 (22%)
Query: 67 GKSFNYVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCSH--CGYETLRSHDLKRHMRI 121
GK F+ +++ H++ HTG++PY C C + +S +LK H+
Sbjct: 71 GKRFSL-----------DFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILT 116
Score = 30.2 bits (69), Expect = 0.10
Identities = 4/27 (14%), Positives = 10/27 (37%), Gaps = 2/27 (7%)
Query: 97 EKPYKCSH--CGYETLRSHDLKRHMRI 121
+ C H C + +++H+
Sbjct: 3 PRTIACPHKGCTKMFRDNSAMRKHLHT 29
Score = 29.8 bits (68), Expect = 0.11
Identities = 8/35 (22%), Positives = 12/35 (34%), Gaps = 11/35 (31%)
Query: 67 GKSFNYVCCLCDYNVNGRTDMKRHLQTHTGEKPYK 101
K F T++K H+ TH K +
Sbjct: 101 NKKFAQ-----------STNLKSHILTHAKAKNNQ 124
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 43.7 bits (104), Expect = 2e-07
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 89 RHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ TGEKPYKCS CG R L H +
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQS 34
Score = 34.4 bits (80), Expect = 6e-04
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCS 103
Y C C ++ + H Q+HTGE+ S
Sbjct: 13 YKCSDCGKAFTRKSGLHIHQQSHTGERHSGPS 44
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 43.7 bits (104), Expect = 2e-07
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 89 RHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ TGEKPY C+ CG + S L +H+R+
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRV 34
Score = 34.4 bits (80), Expect = 6e-04
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCSH 104
Y C +C + +HL+ HT E S
Sbjct: 13 YSCNVCGKAFVLSAHLNQHLRVHTQETLSGPSS 45
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 43.3 bits (103), Expect = 2e-07
Identities = 15/33 (45%), Positives = 17/33 (51%)
Query: 89 RHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ +GEKPYKCS CG R L H RI
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRI 34
Score = 32.1 bits (74), Expect = 0.004
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCS 103
Y C C + T + H + HTG +P S
Sbjct: 13 YKCSECGKAFHRHTHLNEHRRIHTGYRPSGPS 44
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 43.2 bits (103), Expect = 2e-07
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 89 RHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ TGE+PY C+ CG +L +H +I
Sbjct: 2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKI 34
Score = 37.5 bits (88), Expect = 5e-05
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCSH 104
Y+C +C R+++ +H + HTGEKP S
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSS 45
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 43.3 bits (103), Expect = 3e-07
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 90 HLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ +GE+PY C+ CG R L H++
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKR 34
Score = 34.8 bits (81), Expect = 5e-04
Identities = 9/37 (24%), Positives = 13/37 (35%), Gaps = 11/37 (29%)
Query: 67 GKSFNYVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCS 103
GK+F + + HL+ H EK S
Sbjct: 19 GKNFGR-----------HSHLIEHLKRHFREKSSGPS 44
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 43.3 bits (103), Expect = 3e-07
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 90 HLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ +GEKPYKC CG R DL H R+
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRV 34
Score = 34.8 bits (81), Expect = 5e-04
Identities = 12/32 (37%), Positives = 14/32 (43%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCS 103
Y C C R D+ H + HTGEK S
Sbjct: 13 YKCVECGKGYKRRLDLDFHQRVHTGEKLSGPS 44
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 43.3 bits (103), Expect = 3e-07
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 89 RHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ GE+ ++CS CG L++ + +H RI
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRI 34
Score = 31.4 bits (72), Expect = 0.008
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCS 103
+ C C ++ +H + HTGEKP S
Sbjct: 13 HRCSDCGKFFLQASNFIQHRRIHTGEKPSGPS 44
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 43.3 bits (103), Expect = 3e-07
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 89 RHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ +G+KPY+C C ++ L +H R+
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRV 34
Score = 31.7 bits (73), Expect = 0.006
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 84 RTDMKRHLQTHTGEKPYKCS 103
+ +H + HTGE+ S
Sbjct: 25 IGHLNQHKRVHTGERSSGPS 44
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 43.2 bits (103), Expect = 3e-07
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 89 RHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ TGEKPYKC+ CG ++ L RH I
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGI 34
Score = 35.1 bits (82), Expect = 3e-04
Identities = 12/33 (36%), Positives = 14/33 (42%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCSH 104
Y C C + + RH HTGEKP S
Sbjct: 13 YKCNECGKVFTQNSHLVRHRGIHTGEKPSGPSS 45
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 43.3 bits (103), Expect = 3e-07
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 89 RHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ +GEKPYKC+ CG ++ L H RI
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRI 34
Score = 34.0 bits (79), Expect = 0.001
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCSH 104
Y C C + + H + HTGEKP S
Sbjct: 13 YKCNECGKVFTQNSHLTNHWRIHTGEKPSGPSS 45
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 43.3 bits (103), Expect = 3e-07
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 89 RHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ TGEKPYKC+ CG ++ L RH RI
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRI 34
Score = 34.4 bits (80), Expect = 6e-04
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCSH 104
Y C C + + + RH + HTGEKP S
Sbjct: 13 YKCNECGKAFSQTSKLARHQRIHTGEKPSGPSS 45
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 43.3 bits (103), Expect = 3e-07
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 89 RHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ TGEKPYKC+ CG + L RH RI
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRI 34
Score = 34.0 bits (79), Expect = 9e-04
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCSH 104
Y C C + + RH + HTGEKP S
Sbjct: 13 YKCNECGKVFRHNSYLSRHQRIHTGEKPSGPSS 45
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.9 bits (102), Expect = 3e-07
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 89 RHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ TGEKPY+C C + L +H +
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKT 34
Score = 32.9 bits (76), Expect = 0.002
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCS 103
Y C +C + + +H +THTGEKP S
Sbjct: 13 YECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 42.9 bits (102), Expect = 3e-07
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 89 RHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ TGE+P+KC+ CG ++S L +H RI
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRI 34
Score = 33.6 bits (78), Expect = 0.001
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCSH 104
+ C C + + +H + HTGEKP S
Sbjct: 13 HKCNECGKSFIQSAHLIQHQRIHTGEKPSGPSS 45
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 44.1 bits (105), Expect = 3e-07
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 88 KRHLQTHTGEKPYKCSH--CGYETLRSHDLKRHMRI 121
K H +HT + PY+C H C LKRH ++
Sbjct: 20 KVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKV 55
Score = 39.1 bits (92), Expect = 2e-05
Identities = 9/36 (25%), Positives = 13/36 (36%)
Query: 88 KRHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRIKH 123
KRH + H G K C + +H+ H
Sbjct: 50 KRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 85
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 45
Score = 42.9 bits (102), Expect = 3e-07
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 90 HLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ TG+KP++C+HCG +L H RI
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRI 34
Score = 33.3 bits (77), Expect = 0.002
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCS 103
+ C C + + ++ H + HTGEK S
Sbjct: 13 FECTHCGKSFRAKGNLVTHQRIHTGEKSGPSS 44
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 42.9 bits (102), Expect = 3e-07
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 89 RHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ TGEK YKC+ CG R+ L +H +I
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKI 34
Score = 33.3 bits (77), Expect = 0.002
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCSH 104
Y C C + + + +H + HTGEKP S
Sbjct: 13 YKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSS 45
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 42.9 bits (102), Expect = 3e-07
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 90 HLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ TGEK Y C CG R+ L +H R+
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERL 34
Score = 32.5 bits (75), Expect = 0.004
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCS 103
Y C C + + + +H + H+GEKP S
Sbjct: 13 YNCKECGKSFSRAPCLLKHERLHSGEKPSGPS 44
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 42.9 bits (102), Expect = 4e-07
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 90 HLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ GEK +KC C ++ L+ H +
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNV 34
Score = 35.2 bits (82), Expect = 3e-04
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCS 103
+ C CD + + ++ H H GEKP S
Sbjct: 13 WKCRECDMCFSQASSLRLHQNVHVGEKPSGPS 44
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.9 bits (102), Expect = 4e-07
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 89 RHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ TGE+ Y+CS CG R L H RI
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRI 34
Score = 35.2 bits (82), Expect = 4e-04
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCSH 104
Y C C ++ + H + HTGEKP S
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEKPSGPSS 45
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 42.9 bits (102), Expect = 4e-07
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 89 RHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ TGEKPY+C CG ++ L +H R+
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRV 34
Score = 34.4 bits (80), Expect = 6e-04
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCSH 104
Y C C + T + +H + HTGEKP S
Sbjct: 13 YECKECGKAFSQTTHLIQHQRVHTGEKPSGPSS 45
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.9 bits (102), Expect = 4e-07
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 89 RHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ TGEKPYKC+ CG ++ L H RI
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRI 34
Score = 32.5 bits (75), Expect = 0.003
Identities = 10/32 (31%), Positives = 13/32 (40%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCS 103
Y C C + + H + HTG KP S
Sbjct: 13 YKCNECGKVFTQNSHLANHQRIHTGVKPSGPS 44
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 42.9 bits (102), Expect = 4e-07
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 90 HLQTHTGEKPYKCSHCGYETLRSHDLKRHMRIKH 123
+ TG+KPY+C CG +++ L RH R H
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYH 36
Score = 30.2 bits (69), Expect = 0.021
Identities = 13/33 (39%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 72 YVCCLCDYNVNGRTDMKRHL-QTHTGEKPYKCS 103
Y C C T + RH HTGEKP S
Sbjct: 13 YECIECGKAFIQNTSLIRHWRYYHTGEKPSGPS 45
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 42.9 bits (102), Expect = 4e-07
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 90 HLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ TGEKPYKC CG + DL H +
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMV 34
Score = 34.4 bits (80), Expect = 6e-04
Identities = 13/32 (40%), Positives = 14/32 (43%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCS 103
Y C C R D+ H HTGEKP S
Sbjct: 13 YKCEECGKGFICRRDLYTHHMVHTGEKPSGPS 44
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.9 bits (102), Expect = 4e-07
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 90 HLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ TGEKP+KC CG L RH +
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMV 34
Score = 35.9 bits (84), Expect = 2e-04
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCS 103
+ C +C + GR+ + RH HT EKP S
Sbjct: 13 FKCDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.9 bits (102), Expect = 4e-07
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 89 RHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ +GEKP+KC CG ++ L H R+
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRV 34
Score = 32.9 bits (76), Expect = 0.002
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCS 103
+ C C + + H + HTGEKP S
Sbjct: 13 FKCEECGKRFTQNSQLHSHQRVHTGEKPSGPS 44
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 42.6 bits (101), Expect = 5e-07
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 90 HLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ T K Y C+ CG R L RH +I
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKI 34
Score = 23.3 bits (51), Expect = 9.4
Identities = 7/31 (22%), Positives = 10/31 (32%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKC 102
Y C C + RH + HT +
Sbjct: 13 YNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 42.5 bits (101), Expect = 5e-07
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 89 RHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ +GE+P+KC+ CG R L H+R+
Sbjct: 2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRL 34
Score = 32.5 bits (75), Expect = 0.003
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCS 103
+ C C R+ + HL+ H+ EK S
Sbjct: 13 FKCNECGKGFGRRSHLAGHLRLHSREKSSGPS 44
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 42.5 bits (101), Expect = 5e-07
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 89 RHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ TGEKPY+C CG + +L +H RI
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRI 34
Score = 35.2 bits (82), Expect = 3e-04
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCSH 104
Y C C + ++ +H + HTGEKP S
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTGEKPSGPSS 45
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 43.2 bits (103), Expect = 5e-07
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 89 RHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
R + YKC CG S DL +H R
Sbjct: 8 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRT 40
Score = 42.8 bits (102), Expect = 7e-07
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 11/55 (20%)
Query: 67 GKSFNYVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
GKSF++ +D+ +H +THTGEKPYKC CG ++ L H R+
Sbjct: 25 GKSFSH-----------SSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRV 68
Score = 28.2 bits (64), Expect = 0.26
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYK 101
Y C C R+ + H + HTG P
Sbjct: 47 YKCDECGKAFIQRSHLIGHHRVHTGSGPSS 76
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.5 bits (101), Expect = 5e-07
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 90 HLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ TGEKPY C+ CG +L +H +I
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKI 34
Score = 37.1 bits (87), Expect = 7e-05
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCSH 104
Y+C C R+++ +H + HT +KP S
Sbjct: 13 YICAECGKAFTIRSNLIKHQKIHTKQKPSGPSS 45
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 42.5 bits (101), Expect = 5e-07
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 89 RHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ TGEKPYKC CG S L +H +
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSV 34
Score = 32.1 bits (74), Expect = 0.005
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCS 103
Y C +C + + +H H+GE+P S
Sbjct: 13 YKCQVCGKAFRVSSHLVQHHSVHSGERPSGPS 44
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.5 bits (101), Expect = 5e-07
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 89 RHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ TGEKPY+CS CG + L H +I
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQI 34
Score = 36.7 bits (86), Expect = 9e-05
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCSH 104
Y C +C + ++ + H Q HTGEKP S
Sbjct: 13 YECSICGKSFTKKSQLHVHQQIHTGEKPSGPSS 45
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.5 bits (101), Expect = 5e-07
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 90 HLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ GEKPY+CS CG S+ L +H
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWIT 34
Score = 34.1 bits (79), Expect = 9e-04
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCS 103
Y C C + +G + +H THT EKP S
Sbjct: 13 YQCSECGKSFSGSYRLTQHWITHTREKPSGPS 44
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.5 bits (101), Expect = 6e-07
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 90 HLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ TGEKPY C+ CG ++ L RH RI
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRI 34
Score = 33.6 bits (78), Expect = 0.001
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCS 103
Y+C C + ++ + RH + HTGEKP S
Sbjct: 13 YICNECGKSFIQKSHLNRHRRIHTGEKPSGPS 44
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.5 bits (101), Expect = 6e-07
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 89 RHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ TGEKP++CS C +L H R
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRT 34
Score = 35.5 bits (83), Expect = 3e-04
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCS 103
+ C C N ++++ H +THTGEKP S
Sbjct: 13 FECSECQKAFNTKSNLIVHQRTHTGEKPSGPS 44
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 44.6 bits (106), Expect = 6e-07
Identities = 5/35 (14%), Positives = 10/35 (28%)
Query: 89 RHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRIKH 123
+ C H+L H+ ++H
Sbjct: 15 SCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEH 49
Score = 44.2 bits (105), Expect = 1e-06
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 82 NGRTDMKRHLQTHTGEKPYKCSH--CGYETLRSHDLKRHMRI 121
+ + H++ HTGEKP+ C CG RS +LK H R
Sbjct: 73 KAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRT 114
Score = 43.4 bits (103), Expect = 2e-06
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 88 KRHLQTHTGEKPYKCSH--CGYETLRSHDLKRHMRI 121
K H +THTGEKP+KC C S D K+HM +
Sbjct: 109 KIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHV 144
Score = 33.4 bits (77), Expect = 0.008
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 86 DMKRHLQTHTGEKPYKCS 103
D K+H+ HT +K S
Sbjct: 137 DRKKHMHVHTSDKSGPSS 154
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 42.5 bits (101), Expect = 6e-07
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 90 HLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ + EKPYKC CG R +L H R+
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRV 34
Score = 33.6 bits (78), Expect = 0.001
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCS 103
Y C C N R ++ H + H GEK S
Sbjct: 13 YKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPS 44
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 42.5 bits (101), Expect = 6e-07
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 89 RHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ TG++PY+C CG L H R
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRS 34
Score = 33.3 bits (77), Expect = 0.002
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCS 103
Y C C ++ + H ++HTGEKP S
Sbjct: 13 YECIECGKAFKTKSSLICHRRSHTGEKPSGPS 44
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 42.5 bits (101), Expect = 6e-07
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 89 RHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ TG KPY C+ CG L H R
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRT 34
Score = 31.3 bits (72), Expect = 0.010
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKC 102
YVC C ++ + H +THTGE
Sbjct: 13 YVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 42.5 bits (101), Expect = 6e-07
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 89 RHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ TGEKP+KC CG + L +H R+
Sbjct: 2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRV 34
Score = 34.4 bits (80), Expect = 6e-04
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCSH 104
+ C C + N R + +H + HTGEKP S
Sbjct: 13 FKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSS 45
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 45.1 bits (108), Expect = 6e-07
Identities = 21/50 (42%), Positives = 25/50 (50%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
Y C C + + + H +THTGEKPYKC CG DL RH R
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRT 71
Score = 44.7 bits (107), Expect = 7e-07
Identities = 21/50 (42%), Positives = 29/50 (58%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
Y C C + + + D+ RH +THTGEKPYKC CG + +L+ H R
Sbjct: 50 YKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRT 99
Score = 44.7 bits (107), Expect = 9e-07
Identities = 19/50 (38%), Positives = 27/50 (54%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
Y C C + + R +++ H +THTGEKPY C CG + L+ H R
Sbjct: 78 YKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRT 127
Score = 44.0 bits (105), Expect = 2e-06
Identities = 20/50 (40%), Positives = 25/50 (50%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
Y C C + + ++ H +THTGEKPYKC CG R L H R
Sbjct: 134 YKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRT 183
Score = 44.0 bits (105), Expect = 2e-06
Identities = 13/33 (39%), Positives = 13/33 (39%)
Query: 89 RHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
GEKPY C CG RS L H R
Sbjct: 11 AQAALEPGEKPYACPECGKSFSRSDHLAEHQRT 43
Score = 24.7 bits (55), Expect = 9.0
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKP 99
Y C C + + R + H +THTG+K
Sbjct: 162 YKCPECGKSFSRRDALNVHQRTHTGKKT 189
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 42.8 bits (102), Expect = 6e-07
Identities = 19/50 (38%), Positives = 26/50 (52%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
Y C C + + + +H + HTGEKPYKC CG ++ L H RI
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRI 64
Score = 42.1 bits (100), Expect = 1e-06
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 89 RHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
H+GEKPY C CG RS L +H R+
Sbjct: 4 GSSGIHSGEKPYGCVECGKAFSRSSILVQHQRV 36
Score = 26.3 bits (59), Expect = 1.2
Identities = 6/29 (20%), Positives = 10/29 (34%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPY 100
Y C C + + + H + HT
Sbjct: 43 YKCLECGKAFSQNSGLINHQRIHTSGPSS 71
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.1 bits (100), Expect = 7e-07
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 89 RHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ TG KPY C+ CG L H I
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVI 34
Score = 33.6 bits (78), Expect = 0.001
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCSH 104
Y+C C + + + H HTGEKP S
Sbjct: 13 YMCNECGKAFSVYSSLTTHQVIHTGEKPSGPSS 45
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.2 bits (100), Expect = 7e-07
Identities = 13/33 (39%), Positives = 14/33 (42%)
Query: 89 RHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ GEKPY CS CG L HMR
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRT 34
Score = 34.1 bits (79), Expect = 0.001
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCS 103
Y C C + ++ + H++TH+GEKP S
Sbjct: 13 YGCSECGKAFSSKSYLIIHMRTHSGEKPSGPS 44
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.1 bits (100), Expect = 8e-07
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 89 RHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ TGEKP++C CG + L H RI
Sbjct: 2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRI 34
Score = 32.9 bits (76), Expect = 0.002
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCSH 104
+ C C + + + + H + HTGE P S
Sbjct: 13 HECRECGKSFSFNSQLIVHQRIHTGENPSGPSS 45
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 43.6 bits (104), Expect = 8e-07
Identities = 9/39 (23%), Positives = 15/39 (38%)
Query: 83 GRTDMKRHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
G + +K + C CG +S++L H R
Sbjct: 1 GSSGSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERT 39
Score = 42.4 bits (101), Expect = 2e-06
Identities = 15/50 (30%), Positives = 23/50 (46%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
Y C +C + ++ H H+ EKP+KC CG +S L H +
Sbjct: 46 YTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTL 95
Score = 32.0 bits (74), Expect = 0.018
Identities = 6/37 (16%), Positives = 7/37 (18%), Gaps = 11/37 (29%)
Query: 67 GKSFNYVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCS 103
GK F L H H +
Sbjct: 80 GKGFCQSRTL-----------AVHKTLHMQTSSPTAA 105
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 42.2 bits (100), Expect = 8e-07
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 90 HLQTHTGEKPYKCSHCGYETLRSHDLKRHMRIKH 123
+ + KPY C CG R L H++ H
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVH 36
Score = 37.6 bits (88), Expect = 4e-05
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQ-THTGEKPYKCSHCG 106
Y+C C + + H++ HT E+P+KC
Sbjct: 13 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWV 48
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.1 bits (100), Expect = 8e-07
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 89 RHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ TGEKPY+CS CG L H RI
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRI 34
Score = 34.4 bits (80), Expect = 6e-04
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCSH 104
Y C +C + R + H + H+G+KP S
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSS 45
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.1 bits (100), Expect = 8e-07
Identities = 12/33 (36%), Positives = 14/33 (42%)
Query: 89 RHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ TGEKPYKC+ CG L H
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQAT 34
Score = 32.9 bits (76), Expect = 0.002
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCS 103
Y C C R+ + H TH+GEKP S
Sbjct: 13 YKCNECGKAFRARSSLAIHQATHSGEKPSGPS 44
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 42
Score = 41.8 bits (99), Expect = 9e-07
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 90 HLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ GEKPY+C CG + L H+R+
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRV 33
Score = 27.5 bits (62), Expect = 0.22
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPY 100
Y C C + + + H++ HTG P
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 42.1 bits (100), Expect = 9e-07
Identities = 10/32 (31%), Positives = 12/32 (37%)
Query: 90 HLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ G PYKCS C L H R+
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRM 34
Score = 35.2 bits (82), Expect = 3e-04
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCS 103
Y C C+ + +G+ + H + HT EKP S
Sbjct: 13 YKCSQCEKSFSGKLRLLVHQRMHTREKPSGPS 44
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.1 bits (100), Expect = 9e-07
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 89 RHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ TGEKPY+C+ CG +L H +I
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKI 34
Score = 37.1 bits (87), Expect = 6e-05
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCSH 104
Y C C R+++ H + HTGEKP S
Sbjct: 13 YRCAECGKAFTDRSNLFTHQKIHTGEKPSGPSS 45
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.1 bits (100), Expect = 9e-07
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 89 RHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ +GEKP++C CG ++ L H R+
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRV 34
Score = 32.5 bits (75), Expect = 0.003
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCS 103
+ C C + + H + HTGEKP S
Sbjct: 13 FQCEECGKRFTQNSHLHSHQRVHTGEKPSGPS 44
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 41.7 bits (99), Expect = 9e-07
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 90 HLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ TGE PY+C CG R L H +
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKT 34
Score = 29.4 bits (67), Expect = 0.048
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKC 102
Y CC C + + + H +TH+G+
Sbjct: 13 YECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 44
Score = 41.7 bits (99), Expect = 1e-06
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 89 RHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ +GEKPY+C+ CG + L H R
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERT 34
Score = 29.0 bits (66), Expect = 0.062
Identities = 7/31 (22%), Positives = 11/31 (35%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKC 102
Y C C ++ + H +TH G
Sbjct: 13 YECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.8 bits (99), Expect = 1e-06
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 90 HLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ TGEKPY+CS CG ++ L H RI
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRI 34
Score = 36.8 bits (86), Expect = 1e-04
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCSH 104
Y C C + ++ + H + HTGE P S
Sbjct: 13 YECSDCGKSFIKKSQLHVHQRIHTGENPSGPSS 45
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.7 bits (99), Expect = 1e-06
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 90 HLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ TGEKPYKC+ CG ++ L RH I
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGI 34
Score = 34.8 bits (81), Expect = 4e-04
Identities = 12/33 (36%), Positives = 14/33 (42%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCSH 104
Y C C + + RH HTGEKP S
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEKPSGPSS 45
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 44.5 bits (106), Expect = 1e-06
Identities = 17/57 (29%), Positives = 21/57 (36%), Gaps = 13/57 (22%)
Query: 67 GKSFNYVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCSH--CGYETLRSHDLKRHMRI 121
G ++N L + HL HTGEKP+ C C H L RH
Sbjct: 21 GAAYNKNWKL-----------QAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLT 66
Score = 41.4 bits (98), Expect = 1e-05
Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 4/58 (6%)
Query: 68 KSFNYVCCL--CDYNVNGRTDMKRHLQTHTGEKPYKCSH--CGYETLRSHDLKRHMRI 121
K YVC C +K H +HT + PY+C H C LKRH ++
Sbjct: 101 KICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKV 158
Score = 41.0 bits (97), Expect = 2e-05
Identities = 16/59 (27%), Positives = 21/59 (35%), Gaps = 13/59 (22%)
Query: 67 GKSFNYVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCSH--CGYETLRSHDLKRHMRIKH 123
K F + L RH THTGEK + C C ++K+H H
Sbjct: 51 EKGFTSLHHL-----------TRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFH 98
Score = 39.1 bits (92), Expect = 9e-05
Identities = 8/34 (23%), Positives = 12/34 (35%), Gaps = 2/34 (5%)
Query: 90 HLQTHTGEKPYKCSH--CGYETLRSHDLKRHMRI 121
K Y CS CG ++ L+ H+
Sbjct: 3 EKALPVVYKRYICSFADCGAAYNKNWKLQAHLCK 36
Score = 35.6 bits (83), Expect = 0.001
Identities = 12/58 (20%), Positives = 18/58 (31%), Gaps = 11/58 (18%)
Query: 67 GKSFNYVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRIKHK 124
K F+ L KRH + H G K C + +H+ H+
Sbjct: 143 DKRFSLPSRL-----------KRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECHQ 189
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.8 bits (99), Expect = 1e-06
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 90 HLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ TGEKPYKCS CG L+ H +
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKC 34
Score = 34.8 bits (81), Expect = 4e-04
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCS 103
Y C C + ++ ++ H + HTGE+ S
Sbjct: 13 YKCSDCGKSFTWKSRLRIHQKCHTGERHSGPS 44
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.7 bits (99), Expect = 1e-06
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 90 HLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ TGEKPYKC CG +L H ++
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKV 34
Score = 34.0 bits (79), Expect = 8e-04
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCS 103
Y C C N + ++ H + HTGE+P S
Sbjct: 13 YKCEKCGKGYNSKFNLDMHQKVHTGERPSGPS 44
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.7 bits (99), Expect = 1e-06
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 90 HLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ TGE P+ CS CG +L H +I
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKI 34
Score = 34.0 bits (79), Expect = 0.001
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCS 103
++C C +T++ H + HTGE+P S
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHTGERPSGPS 44
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.7 bits (99), Expect = 1e-06
Identities = 13/32 (40%), Positives = 14/32 (43%)
Query: 90 HLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ TGEKPYKC C L H RI
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRI 34
Score = 32.9 bits (76), Expect = 0.003
Identities = 13/37 (35%), Positives = 14/37 (37%), Gaps = 11/37 (29%)
Query: 67 GKSFNYVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCS 103
KSF Y L H + HTGEKP S
Sbjct: 19 HKSFRYGSSL-----------TVHQRIHTGEKPSGPS 44
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.7 bits (99), Expect = 1e-06
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 90 HLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ TGEKPY+C C L +H R+
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRV 34
Score = 34.4 bits (80), Expect = 7e-04
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCSH 104
Y C +C + + +H + H+GEKP S
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVHSGEKPSGPSS 45
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.7 bits (99), Expect = 1e-06
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 89 RHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ TG K ++C+ CG R L H +I
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKI 34
Score = 34.4 bits (80), Expect = 6e-04
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCSH 104
+ C C ++ + H + HTGEKP S
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKPSGPSS 45
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 41.4 bits (98), Expect = 1e-06
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 89 RHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ TGEKP+KC CG R L H ++
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKL 34
Score = 36.3 bits (85), Expect = 1e-04
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCSH 104
+ C C + R+ + H + HTGEKP S
Sbjct: 13 FKCVECGKGFSRRSALNVHHKLHTGEKPSGPSS 45
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.3 bits (98), Expect = 1e-06
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 90 HLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ TG+KPYKC+ CG ++ L RH I
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGI 34
Score = 34.8 bits (81), Expect = 4e-04
Identities = 12/33 (36%), Positives = 14/33 (42%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCSH 104
Y C C + + RH HTGEKP S
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEKPSGPSS 45
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.4 bits (98), Expect = 1e-06
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 90 HLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ TGEKPYKC CG + +H R+
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRL 34
Score = 34.1 bits (79), Expect = 9e-04
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCSH 104
Y C C + +H + HTG++P S
Sbjct: 13 YKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSS 45
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 42.2 bits (100), Expect = 1e-06
Identities = 13/58 (22%), Positives = 19/58 (32%), Gaps = 14/58 (24%)
Query: 67 GKSFNYVCCLCDYNVNGRTDMKRHL-QTHTGEKPYKCSH--CGYETLRSHDLKRHMRI 121
G+ F+ L H H +K + C CG LK HM++
Sbjct: 16 GRIFSNRQYL-----------NHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKL 62
Score = 41.8 bits (99), Expect = 2e-06
Identities = 7/32 (21%), Positives = 10/32 (31%), Gaps = 2/32 (6%)
Query: 94 HTGEKPYKCSH--CGYETLRSHDLKRHMRIKH 123
+G C CG L H + +H
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQH 33
Score = 40.2 bits (95), Expect = 9e-06
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 11/40 (27%)
Query: 67 GKSFNYVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCSHCG 106
GKSFN+ + +K H++ H+ + Y C G
Sbjct: 47 GKSFNF-----------KKHLKEHMKLHSDTRDYICEFSG 75
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 41.4 bits (98), Expect = 1e-06
Identities = 12/33 (36%), Positives = 14/33 (42%)
Query: 89 RHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ TGEKP KC+ CG L H R
Sbjct: 2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRT 34
Score = 33.7 bits (78), Expect = 0.001
Identities = 7/32 (21%), Positives = 12/32 (37%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCS 103
C C ++ + H +TH +K S
Sbjct: 13 CKCTECGKAFCWKSQLIMHQRTHVDDKHSGPS 44
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 41.4 bits (98), Expect = 1e-06
Identities = 11/33 (33%), Positives = 12/33 (36%)
Query: 89 RHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ TG KPY CS C L H R
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRS 34
Score = 34.0 bits (79), Expect = 0.001
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCS 103
Y C C + ++ + H ++HTG KP S
Sbjct: 13 YGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPS 44
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.3 bits (98), Expect = 1e-06
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 90 HLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ TGEKPYKC+ CG +L H I
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVI 34
Score = 32.5 bits (75), Expect = 0.003
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCS 103
Y C C +++ H HTGEKP S
Sbjct: 13 YKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS 44
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.3 bits (98), Expect = 1e-06
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 89 RHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ TGE PY+C CG R + L H R
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRT 34
Score = 35.2 bits (82), Expect = 4e-04
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCSH 104
Y C C + + + H +TH GEKP S
Sbjct: 13 YECHECGKAFSRKYQLISHQRTHAGEKPSGPSS 45
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.4 bits (98), Expect = 1e-06
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 90 HLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ GEK YKC CG E +S L+ H R+
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRV 34
Score = 32.1 bits (74), Expect = 0.004
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCS 103
Y C +C + + ++ H + HTGEKP S
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPS 44
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.4 bits (98), Expect = 2e-06
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 90 HLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ TGEKPYKC+ CG ++ L RH R+
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRV 34
Score = 34.8 bits (81), Expect = 5e-04
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCSH 104
Y C C + + RH + HTG KP S
Sbjct: 13 YKCNECGKVFTQNSHLARHRRVHTGGKPSGPSS 45
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.4 bits (98), Expect = 2e-06
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 90 HLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ TGE+ Y+CS CG ++ L H RI
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRI 34
Score = 35.6 bits (83), Expect = 2e-04
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCSH 104
Y C C ++ + H + H GEKP S
Sbjct: 13 YECSECGKAFIQKSTLSMHQRIHRGEKPSGPSS 45
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.4 bits (98), Expect = 2e-06
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 90 HLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ TG KPY+C+ CG ++ L RH R+
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRV 34
Score = 34.8 bits (81), Expect = 5e-04
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCSH 104
Y C C + + + RH + HTGEKP S
Sbjct: 13 YQCNECGKAFSQTSKLARHQRVHTGEKPSGPSS 45
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 41.3 bits (98), Expect = 2e-06
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 90 HLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ TGEKP+ C CG L +H RI
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRI 34
Score = 36.0 bits (84), Expect = 2e-04
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCSH 104
+ C C + + +H + HTGEKP S
Sbjct: 13 FDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSS 45
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.0 bits (97), Expect = 2e-06
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 89 RHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ TGEKPY+C+ CG L H I
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAI 34
Score = 34.4 bits (80), Expect = 6e-04
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCSH 104
Y C C + R+ + H HTG+KP S
Sbjct: 13 YECNQCGKAFSVRSSLTTHQAIHTGKKPSGPSS 45
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.0 bits (97), Expect = 2e-06
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 90 HLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ +GEKPY C+ CG + L H R
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRT 34
Score = 33.7 bits (78), Expect = 0.001
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCS 103
Y C C + ++ + H +THTGEKP S
Sbjct: 13 YGCNECGKTFSQKSILSAHQRTHTGEKPSGPS 44
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 40.8 bits (96), Expect = 2e-06
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 90 HLQTHTGEKPYKCSHCGYETLRSHDLKRHMR 120
+ TG KP++C C RS L H +
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRK 32
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 40.9 bits (97), Expect = 2e-06
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 90 HLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ TGEKPY+C+ C +L H R
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRT 34
Score = 32.5 bits (75), Expect = 0.004
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKC 102
Y C C N ++++ H +THTGE
Sbjct: 13 YECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 41.0 bits (97), Expect = 2e-06
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 90 HLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ +GEKP+KC CG + H R
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRS 34
Score = 33.7 bits (78), Expect = 0.001
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCSHCG 106
+ C C + H ++H+GEKP S G
Sbjct: 13 FKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS-SG 46
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.6 bits (96), Expect = 3e-06
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 90 HLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ G+K +KC+ C +S L H RI
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRI 34
Score = 31.7 bits (73), Expect = 0.007
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCS 103
+ C C + + H + HTGEKP S
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIHTGEKPSGPS 44
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 40.2 bits (95), Expect = 3e-06
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 92 QTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+GE PY+CS CG R L H R
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISHQRT 32
Score = 32.1 bits (74), Expect = 0.005
Identities = 9/31 (29%), Positives = 12/31 (38%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKC 102
Y C C N + + H +TH GE
Sbjct: 11 YECSECGKAFNRKDQLISHQRTHAGESGPSS 41
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 40.4 bits (95), Expect = 4e-06
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 93 THTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+GEKPY C+ C ++ L +H ++
Sbjct: 4 GSSGEKPYSCAECKETFSDNNRLVQHQKM 32
Score = 23.4 bits (51), Expect = 6.6
Identities = 6/31 (19%), Positives = 11/31 (35%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKC 102
Y C C + + +H + HT +
Sbjct: 11 YSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 40.3 bits (95), Expect = 4e-06
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 90 HLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ +GEK + C CG L+ H R+
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRV 34
Score = 29.1 bits (66), Expect = 0.062
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 11/37 (29%)
Query: 67 GKSFNYVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCS 103
GK+F Y + ++ H + H GEK S
Sbjct: 19 GKNFCY-----------ISALRIHQRVHMGEKCSGPS 44
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 40.7 bits (95), Expect = 7e-06
Identities = 15/81 (18%), Positives = 27/81 (33%), Gaps = 4/81 (4%)
Query: 26 ICSAVNRPDNKLKCYHCKQVLSSSMDDLLFHSRKCAVVWRPGKSFN---YVCCLCDYNVN 82
C ++ C + S+ M +L+ H V + C +
Sbjct: 15 SCKWIDEAQLSRPKKSCDRTFST-MHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFK 73
Query: 83 GRTDMKRHLQTHTGEKPYKCS 103
+ + H++ HTGEK S
Sbjct: 74 AKYKLVNHIRVHTGEKSGPSS 94
Score = 29.6 bits (66), Expect = 0.13
Identities = 11/67 (16%), Positives = 19/67 (28%), Gaps = 9/67 (13%)
Query: 64 WRPGKSFNYVCCLCDYNVNGRTDMKRHLQ-THTGEKPYK--------CSHCGYETLRSHD 114
W + CD + ++ H+ H G C G +
Sbjct: 18 WIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYK 77
Query: 115 LKRHMRI 121
L H+R+
Sbjct: 78 LVNHIRV 84
Score = 28.4 bits (63), Expect = 0.28
Identities = 5/31 (16%), Positives = 10/31 (32%)
Query: 93 THTGEKPYKCSHCGYETLRSHDLKRHMRIKH 123
+ C H+L H+ ++H
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEH 49
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 39.1 bits (92), Expect = 9e-06
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 92 QTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+G++ Y+C CG + L H RI
Sbjct: 3 SGSSGQRVYECQECGKSFRQKGSLTLHERI 32
Score = 26.8 bits (60), Expect = 0.37
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPY 100
Y C C + + + H + HTG P
Sbjct: 11 YECQECGKSFRQKGSLTLHERIHTGSGPS 39
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Length = 42
Score = 38.8 bits (91), Expect = 1e-05
Identities = 10/32 (31%), Positives = 12/32 (37%)
Query: 90 HLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ GE PY C CG + L H R
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRS 33
Score = 28.4 bits (64), Expect = 0.13
Identities = 6/30 (20%), Positives = 12/30 (40%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYK 101
Y+C C + R + H ++ + P
Sbjct: 12 YLCGQCGKSFTQRGSLAVHQRSCSQSGPSS 41
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 37.9 bits (88), Expect = 3e-05
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 89 RHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ GE P+KCS C + + L +H R
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERT 34
Score = 23.3 bits (50), Expect = 9.8
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKP 99
+ C CD R + +H +TH +
Sbjct: 13 FKCSKCDRVFTQRNYLVQHERTHARKSG 40
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 37.5 bits (88), Expect = 4e-05
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 93 THTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+GEKP+ CS C L H +
Sbjct: 4 GSSGEKPFGCSCCEKAFSSKSYLLVHQQT 32
Score = 34.4 bits (80), Expect = 5e-04
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCS 103
+ C C+ + ++ + H QTH EKP S
Sbjct: 11 FGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPS 42
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 39.0 bits (90), Expect = 5e-05
Identities = 8/40 (20%), Positives = 13/40 (32%)
Query: 84 RTDMKRHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRIKH 123
+ K + TG ++C C +L HM
Sbjct: 4 GSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETG 43
Score = 39.0 bits (90), Expect = 5e-05
Identities = 15/98 (15%), Positives = 31/98 (31%), Gaps = 2/98 (2%)
Query: 23 HSKICSAVNRPDNKLKCYHCKQVLSSSMDDLLFHSRKCAVVWRPGKSFNYVCCLCDYNVN 82
K+ ++ +K +C C + + +L H + ++
Sbjct: 6 SGKLYGSIFTGASKFRCKDCSAAYDT-LVELTVHMNETGHYRDDNHE-TDNNNPKRWSKP 63
Query: 83 GRTDMKRHLQTHTGEKPYKCSHCGYETLRSHDLKRHMR 120
+ + +K KC +CG+ DL HM
Sbjct: 64 RKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMI 101
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 36.1 bits (83), Expect = 2e-04
Identities = 10/35 (28%), Positives = 14/35 (40%)
Query: 71 NYVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCSHC 105
C +C + RH +H+GEKPY
Sbjct: 12 QVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 28.4 bits (63), Expect = 0.16
Identities = 7/29 (24%), Positives = 9/29 (31%)
Query: 93 THTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+ K C CG + L RH
Sbjct: 6 SGRTRKQVACEICGKIFRDVYHLNRHKLS 34
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 36.1 bits (82), Expect = 9e-04
Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRIKHKI 125
+VC LC + +K+H++ E C C E + H+ KH I
Sbjct: 75 FVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSALDHVCKKHNI 126
Score = 29.5 bits (65), Expect = 0.20
Identities = 8/35 (22%), Positives = 11/35 (31%)
Query: 90 HLQTHTGEKPYKCSHCGYETLRSHDLKRHMRIKHK 124
L + C C S LK+H+R
Sbjct: 65 RLLASKAISQFVCPLCLMPFSSSVSLKQHIRYTEH 99
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 35.0 bits (80), Expect = 9e-04
Identities = 11/45 (24%), Positives = 17/45 (37%)
Query: 85 TDMKRHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRIKHKIVGKS 129
+ + H G++ KCS CG +R L R + K
Sbjct: 4 GSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRRKTPMCEKCRKD 48
Score = 27.3 bits (60), Expect = 0.57
Identities = 5/34 (14%), Positives = 11/34 (32%)
Query: 89 RHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRIK 122
T + K C C ++ + L + +
Sbjct: 29 IRRSTLSRRKTPMCEKCRKDSCQEAALNKDEGNE 62
Score = 25.4 bits (55), Expect = 2.5
Identities = 4/30 (13%), Positives = 10/30 (33%)
Query: 71 NYVCCLCDYNVNGRTDMKRHLQTHTGEKPY 100
+C C + + + +G+K
Sbjct: 39 TPMCEKCRKDSCQEAALNKDEGNESGKKTS 68
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 32.4 bits (73), Expect = 0.011
Identities = 13/56 (23%), Positives = 17/56 (30%), Gaps = 4/56 (7%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQT-HTG---EKPYKCSHCGYETLRSHDLKRHMRIKH 123
Y C C + H+ + H Y C C + T R L H H
Sbjct: 19 YECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYH 74
Score = 32.1 bits (72), Expect = 0.015
Identities = 8/35 (22%), Positives = 16/35 (45%)
Query: 89 RHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRIKH 123
+ Q E Y+C +C ++T + H+ +H
Sbjct: 8 HNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEH 42
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 31.0 bits (69), Expect = 0.016
Identities = 15/36 (41%), Positives = 18/36 (50%)
Query: 94 HTGEKPYKCSHCGYETLRSHDLKRHMRIKHKIVGKS 129
+GEKPY C CG R + H+R VGKS
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKS 40
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 30.2 bits (67), Expect = 0.023
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 95 TGEKPYKCSHCGYETLRSHDLKRHMR 120
+ KPYKC C Y + +L H+R
Sbjct: 5 SSGKPYKCPQCSYASAIKANLNVHLR 30
Score = 27.1 bits (59), Expect = 0.32
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEK 98
Y C C Y + ++ HL+ HTGEK
Sbjct: 10 YKCPQCSYASAIKANLNVHLRKHTGEK 36
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 28.3 bits (64), Expect = 0.098
Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 98 KPYKCSH--CGYETLRSHDLKRHMRI 121
+P+ C+ CG RS +L+RH R
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRT 26
Score = 24.1 bits (53), Expect = 3.3
Identities = 8/13 (61%), Positives = 12/13 (92%)
Query: 86 DMKRHLQTHTGEK 98
+++RH +THTGEK
Sbjct: 19 ELQRHKRTHTGEK 31
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 30.6 bits (68), Expect = 0.11
Identities = 8/41 (19%), Positives = 12/41 (29%)
Query: 88 KRHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRIKHKIVGK 128
H GEK + DL+ + + GK
Sbjct: 197 TIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLSVLRQGK 237
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 30.6 bits (68), Expect = 0.15
Identities = 9/40 (22%), Positives = 13/40 (32%), Gaps = 1/40 (2%)
Query: 90 HLQTHTGEKPYKCSHCGYETLRSHDLKRHMRIKHKIVGKS 129
T + Y+C C DL H+ H + G
Sbjct: 171 LPPTASSGHGYQCHVCSAVLFSPLDLDAHVAS-HGLHGNM 209
Score = 27.9 bits (61), Expect = 0.99
Identities = 6/30 (20%), Positives = 11/30 (36%)
Query: 65 RPGKSFNYVCCLCDYNVNGRTDMKRHLQTH 94
Y C +C + D+ H+ +H
Sbjct: 174 TASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 27.7 bits (62), Expect = 0.17
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 98 KPYKCSHCGYETLRSHDLKRHMR 120
+ + C C R LKRH R
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYR 23
Score = 25.4 bits (56), Expect = 1.3
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEK 98
+VC +C + +KRH ++HT EK
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEK 29
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 32
Score = 27.3 bits (60), Expect = 0.23
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 97 EKPYKCSH--CGYETLRSHDLKRHMRI 121
++PY C H C +R+HDL RH +
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKS 27
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 26.6 bits (58), Expect = 0.43
Identities = 6/28 (21%), Positives = 14/28 (50%)
Query: 94 HTGEKPYKCSHCGYETLRSHDLKRHMRI 121
+G++P+ C C + RH+++
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKV 29
Score = 23.9 bits (51), Expect = 5.1
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHT 95
+VC +C + + RHL+ HT
Sbjct: 8 FVCRICLSAFTTKANCARHLKVHT 31
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic}
SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Length = 30
Score = 26.3 bits (57), Expect = 0.52
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 98 KPYKCSHCGYETLRSHDLKRHMRIKH 123
K Y+C +C + + S +LK H++ KH
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIKTKH 26
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 28.0 bits (61), Expect = 0.53
Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 87 MKRHLQT-HTGEKPYKCSHCGYETLRSHDLKRHMRIKH 123
+K+H++ + KC HC + L H +H
Sbjct: 41 LKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEH 78
Score = 25.7 bits (55), Expect = 2.7
Identities = 11/64 (17%), Positives = 17/64 (26%), Gaps = 5/64 (7%)
Query: 36 KLKCYHCKQVLSSSMDDLLFHSRKCAVVWRPGKSFNYVCCLCDYNVNGRTDMKRHLQTHT 95
+ C C V ++ L H C + C C + + H
Sbjct: 24 EAVCPTCNVVTRKTLVGLKKHMEVCQKLQDA-----LKCQHCRKQFKSKAGLNYHTMAEH 78
Query: 96 GEKP 99
KP
Sbjct: 79 SAKP 82
Score = 25.7 bits (55), Expect = 3.4
Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 2 KDVFCYHCNLTLPSSTEALILHSKICSAVNRPDNKLKCYHCKQVLSSS 49
+ C CN+ + L H ++C + + LKC HC++ S
Sbjct: 23 GEAVCPTCNVVTRKTLVGLKKHMEVCQ---KLQDALKCQHCRKQFKSK 67
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.9 bits (64), Expect = 0.55
Identities = 14/68 (20%), Positives = 22/68 (32%), Gaps = 16/68 (23%)
Query: 1 MKDVFCYHCNLTLPSSTEALI----------LHSKICSAVNRPDNKLKCYHCKQVLSSSM 50
+++ F N LP TE L K V+ K QVL+ +
Sbjct: 33 LQEQF----NKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCL 88
Query: 51 DDLLFHSR 58
+ F +
Sbjct: 89 TE--FENC 94
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 26.0 bits (56), Expect = 0.85
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEK 98
+ C LC+Y ++++K H+ H+ EK
Sbjct: 10 FKCSLCEYATRSKSNLKAHMNRHSTEK 36
Score = 24.8 bits (53), Expect = 2.2
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 98 KPYKCSHCGYETLRSHDLKRHM 119
KP+KCS C Y T +LK HM
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHM 29
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 25.9 bits (56), Expect = 0.97
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 93 THTGEKPYKCSHCGYETLRSHDLKRHMRIKHK 124
+ EK +KC+ C S L +H RI +
Sbjct: 6 SGQKEKCFKCNKCEKTFSCSKYLTQHERIHTR 37
>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein,
helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis}
SCOP: g.37.1.4 g.37.1.4
Length = 127
Score = 26.8 bits (58), Expect = 1.7
Identities = 14/92 (15%), Positives = 29/92 (31%), Gaps = 7/92 (7%)
Query: 1 MKDVFCYHCNLTLPSSTEALILHSKICSAVNRPDNKLKCYHCKQVLSSSMDDLLFHSRKC 60
D C C+ L S + H + + NK++ Y S+ F +
Sbjct: 30 FSDTQCKVCSAVL-ISESQKLAHYQ----SRKHANKVRRYMAINQGEDSVPAKKFKAAPA 84
Query: 61 AVVWRPGKSFNYVCCLCDYNVNGRTDMKRHLQ 92
+ + + C +C+ + + H
Sbjct: 85 EISDGEDR--SKCCPVCNMTFSSPVVAESHYI 114
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
classical zinc finger, transcription; NMR {Homo sapiens}
Length = 30
Score = 24.7 bits (53), Expect = 2.0
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 98 KPYKCSHCGYETLRSHDLKRHMRI 121
KPY C HC + L+RH+RI
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRI 25
Score = 23.9 bits (51), Expect = 4.4
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEK 98
YVC C ++RH++ HTGEK
Sbjct: 4 YVCIHCQRQFADPGALQRHVRIHTGEK 30
>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin
remodeling, DNA binding protein/DNA complex; HET: DNA;
NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB:
1yuj_A*
Length = 54
Score = 25.3 bits (54), Expect = 2.5
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 97 EKPYKCSHCGYETLRSHDLKRHMRIKH 123
E+P C C +S +L+RH+ ++H
Sbjct: 22 EQPATCPICYAVIRQSRNLRRHLELRH 48
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 26.0 bits (56), Expect = 2.5
Identities = 13/64 (20%), Positives = 22/64 (34%), Gaps = 7/64 (10%)
Query: 36 KLKCYHCKQVLSSSMDDLLFHSRKCAVVWRPGKSFNYVCCLCDYNVNGRTDMKRHLQTHT 95
+ C C+ V +++ L H C K + C C + MK H+ +
Sbjct: 34 SVSCPTCQAVGRKTIEGLKKHMENC-------KQEMFTCHHCGKQLRSLAGMKYHVMANH 86
Query: 96 GEKP 99
P
Sbjct: 87 NSLP 90
Score = 25.6 bits (55), Expect = 2.7
Identities = 9/39 (23%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 85 TDMKRHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRIKH 123
+K+H++ ++ + C HCG + +K H+ H
Sbjct: 49 EGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVMANH 86
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family;
enzyme-substrate complex, protein binding,
transcription; HET: ALY MES; 2.00A {Archaeoglobus
fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Length = 253
Score = 26.0 bits (58), Expect = 3.6
Identities = 8/46 (17%), Positives = 16/46 (34%), Gaps = 5/46 (10%)
Query: 69 SFNYVCCL-CDYNVNGRTDMKRHLQTHTGEKPYKCSHCGYETLRSH 113
S + + CL C D ++ + +C CG ++
Sbjct: 120 SMDKLDCLDCHE----TYDWSEFVEDFNKGEIPRCRKCGSYYVKPR 161
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.1 bits (56), Expect = 3.6
Identities = 5/19 (26%), Positives = 9/19 (47%), Gaps = 2/19 (10%)
Query: 10 NLTL--PSSTEALILHSKI 26
+L L S AL + + +
Sbjct: 28 SLKLYADDSAPALAIKATM 46
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron
transfer, DIIR center, oxidoreductase; 1.40A
{Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1
PDB: 1yv1_A 1yux_A
Length = 202
Score = 25.9 bits (56), Expect = 3.7
Identities = 9/36 (25%), Positives = 12/36 (33%), Gaps = 13/36 (36%)
Query: 72 YVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCSHCGY 107
++C +C Y H GE KC C
Sbjct: 172 HLCPICGY-------------IHKGEDFEKCPICFR 194
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.4 bits (57), Expect = 3.9
Identities = 10/64 (15%), Positives = 18/64 (28%), Gaps = 13/64 (20%)
Query: 68 KSFNYVCCLCDYNVNGRTDMKRHLQTHTGE---KPYKCSH----CG-----YETLRSHDL 115
+ +N YNV+ R L+ E G + S+ +
Sbjct: 118 RLYNDNQVFAKYNVS-RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKV 176
Query: 116 KRHM 119
+ M
Sbjct: 177 QCKM 180
>1nh2_C Transcription initiation factor IIA large chain;
transcription/DNA; HET: 5IU; 1.90A {Saccharomyces
cerevisiae} SCOP: b.56.1.1 PDB: 1ytf_C*
Length = 79
Score = 24.6 bits (53), Expect = 6.0
Identities = 8/35 (22%), Positives = 14/35 (40%)
Query: 30 VNRPDNKLKCYHCKQVLSSSMDDLLFHSRKCAVVW 64
V R + KC V++ + +D F + W
Sbjct: 44 VTRTKARWKCSLKDGVVTINRNDYTFQKAQVEAEW 78
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP,
deubiquitinating enzyme, substrate recognition; 3.20A
{Homo sapiens}
Length = 522
Score = 25.7 bits (56), Expect = 6.2
Identities = 10/77 (12%), Positives = 24/77 (31%), Gaps = 25/77 (32%)
Query: 67 GKSFNYVCCL-CDY-------------NVNGRTDMKRHLQTHT------GEKPYKCSHCG 106
GK +Y+ C DY ++ G+ ++ + G+ Y G
Sbjct: 288 GKMVSYIQCKEVDYRSDRREDYYDIQLSIKGKKNIFESFVDYVAVEQLDGDNKYDAGEHG 347
Query: 107 YETLRSHDLKRHMRIKH 123
+ ++ ++
Sbjct: 348 L-----QEAEKGVKFLT 359
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 23.7 bits (51), Expect = 6.5
Identities = 7/37 (18%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 64 WRPGKSFNYVCCL--CDYNVNGRTDMKRHLQTHTGEK 98
+ + C C R +++ H+QTH ++
Sbjct: 11 VKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces
cerevisiae} SCOP: c.31.1.5
Length = 361
Score = 25.3 bits (55), Expect = 6.8
Identities = 11/39 (28%), Positives = 14/39 (35%), Gaps = 2/39 (5%)
Query: 69 SFNYVCCL-CDYNVNGRTDMKRHLQTHTGEKPYKCSHCG 106
SF + C+ C K L H + KC CG
Sbjct: 141 SFAHCHCIGCGKVYPP-QVFKSKLAEHPIKDFVKCDVCG 178
>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain
associated with ring and TRAF domains protein 1,
malignant 62; NMR {Homo sapiens}
Length = 76
Score = 24.1 bits (52), Expect = 7.2
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 84 RTDMKRHLQTHTGEKPYKCSHCGYETLRSHDLKRHMRI 121
R D+ HLQ ++ KC CG + + H +
Sbjct: 29 RRDLPAHLQHDCPKRRLKCEFCGCDFSGE-AYESHEGM 65
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 28
Score = 23.2 bits (49), Expect = 7.3
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 98 KPYKCSHCGYETLRSHDLKRHMRI 121
+PY CS CG H ++ H R+
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRV 25
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP
ribose,, gene regulation; HET: ALY OAD; 1.50A
{Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A*
1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Length = 289
Score = 25.1 bits (55), Expect = 7.4
Identities = 11/39 (28%), Positives = 14/39 (35%), Gaps = 2/39 (5%)
Query: 69 SFNYVCCL-CDYNVNGRTDMKRHLQTHTGEKPYKCSHCG 106
SF + C+ C K L H + KC CG
Sbjct: 133 SFAHCHCIGCGKVYPP-QVFKSKLAEHPIKDFVKCDVCG 170
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 24.5 bits (52), Expect = 8.2
Identities = 19/86 (22%), Positives = 26/86 (30%), Gaps = 10/86 (11%)
Query: 38 KCYHCKQVLSSSMDDLLFHSRKCAVVWRPGKSFNYVCCLCDYNVNGRTDMKRHLQTHTGE 97
+C C LSS ++ H R C VC C + H ++
Sbjct: 18 QCRLCNAKLSSLLE-QGSHERLCRN--------AAVCPYCSLRFFSPELKQEH-ESKCEY 67
Query: 98 KPYKCSHCGYETLRSHDLKRHMRIKH 123
K C C S + RH H
Sbjct: 68 KKLTCLECMRTFKSSFSIWRHQVEVH 93
>2d3a_A Glutamine synthetase; ligase; HET: P3S ADP; 2.63A {Zea mays} PDB:
2d3b_A* 2d3c_A*
Length = 356
Score = 25.1 bits (55), Expect = 8.4
Identities = 9/51 (17%), Positives = 14/51 (27%), Gaps = 8/51 (15%)
Query: 65 RPGKSFNYVCCLCDYNVNGRTDMKRHLQTHTGEKPYKCSHCGYETLRSHDL 115
PG Y C + GR + H + C + G +
Sbjct: 150 FPGPQGPYYCGIGAEKSFGRDIVDAHYKA--------CLYAGINISGINGE 192
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.136 0.456
Gapped
Lambda K H
0.267 0.0543 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,918,245
Number of extensions: 98731
Number of successful extensions: 931
Number of sequences better than 10.0: 1
Number of HSP's gapped: 836
Number of HSP's successfully gapped: 409
Length of query: 129
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 46
Effective length of database: 4,384,350
Effective search space: 201680100
Effective search space used: 201680100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.2 bits)