BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13445
(115 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 9/92 (9%)
Query: 22 SSGVWCHHCEQFLPSSVDDLLLHSRKCASAHRPDKSYNYVCCICDYKSYKKSHMRDHIQS 81
SSGV C C + + H + +H +K Y+ C +C + +K M H++S
Sbjct: 5 SSGVACEICGKIFRD-----VYHLNRHKLSHSGEKPYS--CPVCGLRFKRKDRMSYHVRS 57
Query: 82 HLG--DKPFVCEHCFSNFARLRRLKEHILRMH 111
H G KP++C+ C F+R L HI ++H
Sbjct: 58 HDGSVGKPYICQSCGKGFSRPDHLNGHIKQVH 89
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 36 SSVDDLLLHSRKCASAHRPDKSYNYVCCICDYKSYKKSHMRDHIQSHLGDKPFVCEHCFS 95
S DL H R H +K Y C C +++++R H ++H G+KP+ C C
Sbjct: 60 SDKKDLTRHQR----THTGEKPYK--CPECGKSFSQRANLRAHQRTHTGEKPYACPECGK 113
Query: 96 NFARLRRLKEH 106
+F++L L+ H
Sbjct: 114 SFSQLAHLRAH 124
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 60 YVCCICDYKSYKKSHMRDHIQSHLGDKPFVCEHCFSNFARLRRLKEH 106
Y C C + +H+R H ++H G+KP+ C C +F+R L H
Sbjct: 106 YACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTH 152
Score = 34.7 bits (78), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 60 YVCCICDYKSYKKSHMRDHIQSHLGDKPFVCEHCFSNFARLRRLKEH 106
Y C C + H+ +H ++H G+KP+ C C +F+ + L H
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRH 68
Score = 32.3 bits (72), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Query: 36 SSVDDLLLHSRKCASAHRPDKSYNYVCCICDYKSYKKSHMRDHIQSHLGDKPFVCEHCFS 95
S D L H R H +K Y C C K + H ++H G+KP+ C C
Sbjct: 32 SRSDHLAEHQR----THTGEKPYK--CPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGK 85
Query: 96 NFARLRRLKEH 106
+F++ L+ H
Sbjct: 86 SFSQRANLRAH 96
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 60 YVCCICDYKSYKKSHMRDHIQSHLGDKPFVCEHCFSNFARLRRLKEH 106
Y C C ++ ++ H ++H G+KP+ C C +F+R L H
Sbjct: 134 YKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVH 180
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 84 GDKPFVCEHCFSNFARLRRLKEH 106
G+KP+ C C +F+R L EH
Sbjct: 18 GEKPYACPECGKSFSRSDHLAEH 40
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
Length = 87
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Query: 36 SSVDDLLLHSRKCASAHRPDKSYNYVCCICDYKSYKKSHMRDHIQSHLGDKPFVCEHCFS 95
S D+L H R + +P + C IC + H+ HI++H G+KPF C+ C
Sbjct: 16 SRSDELTRHIR-IHTGQKP-----FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 69
Query: 96 NFARLRRLKEHI 107
FAR K H
Sbjct: 70 KFARSDERKRHT 81
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 60 YVCCI--CDYKSYKKSHMRDHIQSHLGDKPFVCEHCFSNFARLRRLKEHI 107
Y C + CD + + + HI+ H G KPF C C NF+R L HI
Sbjct: 4 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI 53
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Query: 36 SSVDDLLLHSRKCASAHRPDKSYNYVCCICDYKSYKKSHMRDHIQSHLGDKPFVCEHCFS 95
S D+L H R + +P + C IC + H+ HI++H G+KPF C+ C
Sbjct: 17 SRSDELTRHIR-IHTGQKP-----FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 70
Query: 96 NFARLRRLKEHI 107
FAR K H
Sbjct: 71 KFARSDERKRHT 82
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 60 YVCCI--CDYKSYKKSHMRDHIQSHLGDKPFVCEHCFSNFARLRRLKEHI 107
Y C + CD + + + HI+ H G KPF C C NF+R L HI
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI 54
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%)
Query: 60 YVCCICDYKSYKKSHMRDHIQSHLGDKPFVCEHCFSNFARLRRLKEHI 107
+ C IC + H+ HI++H G+KPF C+ C FAR K H
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHT 82
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 60 YVCCI--CDYKSYKKSHMRDHIQSHLGDKPFVCEHCFSNFARLRRLKEHI 107
Y C + CD + + + HI+ H G KPF C C NF+R L HI
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI 54
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
Length = 90
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%)
Query: 60 YVCCICDYKSYKKSHMRDHIQSHLGDKPFVCEHCFSNFARLRRLKEHI 107
+ C IC + H+ HI++H G+KPF C+ C FAR K H
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHT 82
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 60 YVCCI--CDYKSYKKSHMRDHIQSHLGDKPFVCEHCFSNFARLRRLKEHI 107
Y C + CD + S++ HI+ H G KPF C C NF+R L HI
Sbjct: 5 YACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI 54
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Query: 36 SSVDDLLLHSRKCASAHRPDKSYNYVCCICDYKSYKKSHMRDHIQSHLGDKPFVCEHCFS 95
S D+L H R + +P + C IC + H+ HI++H G+KPF C+ C
Sbjct: 17 SRSDELTRHIR-IHTGQKP-----FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 70
Query: 96 NFARLRRLKEHI 107
FAR K H
Sbjct: 71 KFARSDERKRHT 82
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 60 YVCCI--CDYKSYKKSHMRDHIQSHLGDKPFVCEHCFSNFARLRRLKEHI 107
Y C + CD + + + HI+ H G KPF C C NF+R L HI
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI 54
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 25/47 (53%)
Query: 60 YVCCICDYKSYKKSHMRDHIQSHLGDKPFVCEHCFSNFARLRRLKEH 106
+ C IC + H+ HI++H G+KPF C+ C FAR K H
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 60 YVCCI--CDYKSYKKSHMRDHIQSHLGDKPFVCEHCFSNFARLRRLKEHI 107
Y C + CD + +K+++ HI+ H G KPF C C NF++ L HI
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHI 54
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 60 YVCCICDYKSYKKSHMRDHIQSHLGDKPFVCEHCFSNFARLRRLKEHI 107
+ C IC +++ + HI++H G+KPF C+ C FA L H
Sbjct: 35 FQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRKFATLHTRTRHT 82
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
Length = 90
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%)
Query: 60 YVCCICDYKSYKKSHMRDHIQSHLGDKPFVCEHCFSNFARLRRLKEHI 107
+ C IC + H+ HI++H G+KPF C+ C FAR K H
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHT 82
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 60 YVCCI--CDYKSYKKSHMRDHIQSHLGDKPFVCEHCFSNFARLRRLKEHI 107
Y C + CD + + + + HI+ H G KPF C C NF+R L HI
Sbjct: 5 YACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI 54
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
Length = 90
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 60 YVCCI--CDYKSYKKSHMRDHIQSHLGDKPFVCEHCFSNFARLRRLKEHI 107
Y C + CD + +K+++ HI+ H G KPF C C NF++ L +HI
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHI 54
Score = 34.3 bits (77), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 60 YVCCICDYKSYKKSHMRDHIQSHLGDKPFVCEHCFSNFARLRRLKEHI 107
+ C IC + + + HI++H G+KPF C+ C FA L H
Sbjct: 35 FQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRKFATLHTRDRHT 82
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%)
Query: 60 YVCCICDYKSYKKSHMRDHIQSHLGDKPFVCEHCFSNFARLRRLKEHI 107
+ C IC + H+ HI++H G+KPF C+ C FAR K H
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHT 82
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 60 YVCCI--CDYKSYKKSHMRDHIQSHLGDKPFVCEHCFSNFARLRRLKEHI 107
Y C + CD + + + + HI+ H G KPF C C NF+R L HI
Sbjct: 5 YACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI 54
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 40 DLLLHSRKCASAHRPDKSYNYVCCICDYKSYKKSHMRDHIQSHLGDKPFVCEHCFSNFAR 99
+LL+H R + RP Y C IC ++ H+RDH H +KPF C+ C F +
Sbjct: 32 NLLIHERT-HTDERP-----YTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQ 85
Query: 100 LRRLKEH 106
R L H
Sbjct: 86 SRTLAVH 92
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/48 (25%), Positives = 24/48 (50%)
Query: 59 NYVCCICDYKSYKKSHMRDHIQSHLGDKPFVCEHCFSNFARLRRLKEH 106
++C C K ++ H ++H ++P+ C+ C F R L++H
Sbjct: 17 EFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDH 64
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 29/52 (55%)
Query: 60 YVCCICDYKSYKKSHMRDHIQSHLGDKPFVCEHCFSNFARLRRLKEHILRMH 111
+ C +C ++ +R H+ SH G+ P+ C C F + + L+ H++++H
Sbjct: 67 FTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLH 118
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 24/53 (45%)
Query: 57 SYNYVCCICDYKSYKKSHMRDHIQSHLGDKPFVCEHCFSNFARLRRLKEHILR 109
S C C K K +++ H + H G+KPF C C + R L EH R
Sbjct: 5 SSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEAR 57
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
Length = 73
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 56 KSYNYVCCI--CDYKSYKKSHMRDHIQSHLGDKPFVCEHCFSNFARLRRLKEHI 107
K Y C + CD + + + HI+ H G KPF C C NF+R L HI
Sbjct: 16 KMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI 69
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%)
Query: 59 NYVCCICDYKSYKKSHMRDHIQSHLGDKPFVCEHCFSNFARLRRLKEHILRMH 111
++VC +C ++ H++ H +SH +KP+ C C F R L H ++H
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domains
From Human Krueppel-Like Factor 10
Length = 72
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 65 CDYKSYKKSHMRDHIQSHLGDKPFVC--EHCFSNFARLRRLKEH 106
C +K SH++ H ++H G+KPF C + C FAR L H
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRH 68
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Query: 74 HMRDHIQSHLGDKPFVC--EHCFSNFARLRRLKEHIL 108
++R H++ H GD+P+VC + C FA+ LK HIL
Sbjct: 79 NLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHIL 115
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 60 YVCCICDYKSYKKSHMRDHIQSHLGDKPFVC--EHCFSNFARLRRLKEHILRMH 111
+VC C + S ++ H H G+KPF C E C F+ L+ H+ R+H
Sbjct: 35 HVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHV-RIH 87
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 41 LLLHSRKCASAHRPDKSYNYVCCICDYKSYKKSHMRDHIQSHLGDKPFVCEHCFSNFARL 100
L +HSRK H +K Y C+ + + ++ H + H G KPF C+ C F+R
Sbjct: 24 LQMHSRK----HTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRS 79
Query: 101 RRLKEHI 107
LK H
Sbjct: 80 DHLKTHT 86
Score = 33.9 bits (76), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 8/73 (10%)
Query: 36 SSVDDLLLHSRKCASAHRPDKSYNYVCCICDYKSYKKSHMRDHIQSHLGDKPFVCE--HC 93
S D L H R+ +P + C C K + H++ H ++H G+KPF C C
Sbjct: 49 SRSDQLKRHQRRHTGV-KP-----FQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSC 102
Query: 94 FSNFARLRRLKEH 106
FAR L H
Sbjct: 103 QKKFARSDELVRH 115
Score = 32.7 bits (73), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 65 CDYKSYKKSHMRDHIQSHLGDKPFVCE--HCFSNFARLRRLKEHILR 109
C+ + +K SH++ H + H G+KP+ C+ C F+R +LK H R
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRR 60
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 33.9 bits (76), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 27/59 (45%)
Query: 51 AHRPDKSYNYVCCICDYKSYKKSHMRDHIQSHLGDKPFVCEHCFSNFARLRRLKEHILR 109
H +K Y CD++ + + H + H G KPF C C +F+R L H+ R
Sbjct: 39 THTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKR 97
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 33.5 bits (75), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 27/47 (57%)
Query: 60 YVCCICDYKSYKKSHMRDHIQSHLGDKPFVCEHCFSNFARLRRLKEH 106
Y C C + S+++ H ++H G+KP+ C C +F++ L++H
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKH 51
Score = 33.1 bits (74), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 60 YVCCICDYKSYKKSHMRDHIQSHLGDKPFVCEHCFSNFARLRRLKEH 106
Y C C + S ++ H ++H G+KP+ C C +F+R L H
Sbjct: 33 YKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPECGKSFSRSDHLSRH 79
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 90
Score = 33.5 bits (75), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 7/50 (14%)
Query: 64 ICDY----KSYKKS-HMRDHIQSHLGDKPFVC--EHCFSNFARLRRLKEH 106
CDY K+Y KS H++ H+++H G+KP+ C + C FAR L H
Sbjct: 8 TCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRH 57
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 27/59 (45%)
Query: 51 AHRPDKSYNYVCCICDYKSYKKSHMRDHIQSHLGDKPFVCEHCFSNFARLRRLKEHILR 109
H +K Y+ C +K + + H + H G +PF C+ C F+R L H+ R
Sbjct: 30 THTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKR 88
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 89
Score = 33.1 bits (74), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 7/50 (14%)
Query: 64 ICDY----KSYKKS-HMRDHIQSHLGDKPFVC--EHCFSNFARLRRLKEH 106
CDY K+Y KS H++ H+++H G+KP+ C + C FAR L H
Sbjct: 7 TCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRH 56
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 27/59 (45%)
Query: 51 AHRPDKSYNYVCCICDYKSYKKSHMRDHIQSHLGDKPFVCEHCFSNFARLRRLKEHILR 109
H +K Y+ C +K + + H + H G +PF C+ C F+R L H+ R
Sbjct: 29 THTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKR 87
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 32.3 bits (72), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 68 KSYKK-SHMRDHIQSHLGDKPFVCEH--CFSNFARLRRLKEHILRMH 111
KSY + +++ H++SH G+KP++CEH C F+ +H R H
Sbjct: 77 KSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTH 123
>pdb|1O6J|A Chain A, Tryparedoxin Ii From C.Fasciculata Solved By Sulphur
Phasing
pdb|1O6J|B Chain B, Tryparedoxin Ii From C.Fasciculata Solved By Sulphur
Phasing
Length = 150
Score = 32.3 bits (72), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 15 SKIVFFYSSGVWCHHCEQFLPSSVDDLLLHSRK 47
K VFFY S WC C F P +D H+ K
Sbjct: 29 GKTVFFYFSASWCPPCRAFTPQLIDFYKAHAEK 61
>pdb|1O81|A Chain A, Tryparedoxin Ii From C.fasciculata Solved By Sulphur
Phasing
pdb|1O81|B Chain B, Tryparedoxin Ii From C.fasciculata Solved By Sulphur
Phasing
pdb|1OC9|B Chain B, Tryparedoxin Ii From C.Fasciculata Solved By Mr
pdb|1OC8|A Chain A, Tryparedoxin Ii From C.Fasciculata Solved By Mr
pdb|1OC8|B Chain B, Tryparedoxin Ii From C.Fasciculata Solved By Mr
Length = 152
Score = 32.3 bits (72), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 15 SKIVFFYSSGVWCHHCEQFLPSSVDDLLLHSRK 47
K VFFY S WC C F P +D H+ K
Sbjct: 31 GKTVFFYFSASWCPPCRAFTPQLIDFYKAHAEK 63
>pdb|1FG4|A Chain A, Structure Of Tryparedoxin Ii
pdb|1FG4|B Chain B, Structure Of Tryparedoxin Ii
Length = 149
Score = 32.3 bits (72), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 15 SKIVFFYSSGVWCHHCEQFLPSSVDDLLLHSRK 47
K VFFY S WC C F P +D H+ K
Sbjct: 28 GKTVFFYFSASWCPPCRAFTPQLIDFYKAHAEK 60
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 32.0 bits (71), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 60 YVCCICDYKSYKKSHMRDHIQSHLGDKPFVCEHCFSNFARLRRLKEHILRMH 111
Y C C K ++ H H G+KP+ C C + F R LK H R+H
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHT-RIH 68
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 7/55 (12%)
Query: 59 NYVC----CICDYKSYK-KSHMRDHIQSHLGDKPFVC--EHCFSNFARLRRLKEH 106
N+VC C + KS+K K + +HI+ H G+KPF C C FAR LK H
Sbjct: 57 NHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIH 111
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 71 KKSHMRDHIQSHLGDKPFVC--EHCFSNFARLRRLKEHI 107
+ +++ H ++H G+KPF C E C FA K+H+
Sbjct: 104 RSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHM 142
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 80 QSHLGDKPFVCEHCFSNFARLRRLKEHILRMHPELI 115
++H G+KP+ C C + F + +K HIL+ H E +
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENV 43
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 60 YVCCICDYKSYKKSHMRDHIQSHLGDKPFVCEHCFSNFARLRRLKEH 106
Y C C + ++KS M+ H H G+KP C+ C F++ L H
Sbjct: 30 YPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITH 76
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/50 (24%), Positives = 24/50 (48%)
Query: 59 NYVCCICDYKSYKKSHMRDHIQSHLGDKPFVCEHCFSNFARLRRLKEHIL 108
++ C IC + S + H+ H +P+ C++C F + +K+H
Sbjct: 1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTF 50
>pdb|1OC9|A Chain A, Tryparedoxin Ii From C.Fasciculata Solved By Mr
Length = 152
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 13/25 (52%)
Query: 15 SKIVFFYSSGVWCHHCEQFLPSSVD 39
K VFFY S WC C F P +D
Sbjct: 31 GKTVFFYFSASWCPPCRAFTPQLID 55
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 78 HIQSHLGDKPFVCEHCFSNFARLRRLKEHILRMH 111
H+++H G+KP+ CE C A+ L+ H+ R H
Sbjct: 23 HLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH 56
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Transcriptional Repressor Ctcf
Length = 86
Score = 30.4 bits (67), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 80 QSHLGDKPFVCEHCFSNFARLRRLKEHILRMH-PELI 115
++H G+KP+ C HC F + + L H R H P +
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFV 44
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double Cys2His2
Zinc Finger From The Human Enhancer Binding Protein
Mbp-1
Length = 57
Score = 30.4 bits (67), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 26/48 (54%)
Query: 60 YVCCICDYKSYKKSHMRDHIQSHLGDKPFVCEHCFSNFARLRRLKEHI 107
Y+C C + K S ++ HI++H +P+ C +C +F L +H+
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHM 49
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 60 YVCCICD-YKSYKKS-HMRDHIQSHLGDKPFVC--EHCFSNFARLRRLKEHIL 108
Y+C D +Y K+ ++ H+ H G+KPF C E C F L L H L
Sbjct: 4 YICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSL 56
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2
Domains Of Human Zinc Finger Protein 297b
Length = 110
Score = 30.4 bits (67), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 60 YVCCICDYKSYKKSHMRDHIQSHLGDKPFVCEHCFSNF 97
Y C +C K K H+ H++ H G KP+ C C F
Sbjct: 38 YGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRF 75
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 30.0 bits (66), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
Query: 36 SSVDDLLLHSRKCASAHRPDKSYNYVCCICDYKSYKKSHMRDHIQSHLGDKPFVCEHC 93
S D L H R C + +P Y C CDY + S + H++ H ++PF C+ C
Sbjct: 19 SRKDKLKTHMR-CHTGVKP-----YKCKTCDYAAADSSSLNKHLRIHSDERPFKCQIC 70
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 57 SYNYVCCICDYKSYKKSHMRDHIQSHLGDKPFVCEHCFSNFARLRRLKEHILRMHPE 113
S + C +C +K ++ H++ H G KP+ C+ C A L +H LR+H +
Sbjct: 6 SGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKH-LRIHSD 61
Score = 25.4 bits (54), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 60 YVCCICDYKSYKKSHMRDHIQSHLGD 85
+ C IC Y S S + H++SH GD
Sbjct: 65 FKCQICPYASRNSSQLTVHLRSHTGD 90
>pdb|3S9F|A Chain A, The Structure Of Tryparedoxin I From Leishmania Major
Length = 165
Score = 29.6 bits (65), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 13/25 (52%)
Query: 15 SKIVFFYSSGVWCHHCEQFLPSSVD 39
K VFFY S WC C F P V+
Sbjct: 48 GKTVFFYFSASWCPPCRGFTPQLVE 72
>pdb|1OKD|A Chain A, Nmr-Structure Of Tryparedoxin 1
Length = 154
Score = 29.3 bits (64), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 15 SKIVFFYSSGVWCHHCEQFLPSSVD 39
K+VFFY S WC C F P ++
Sbjct: 28 GKLVFFYFSASWCPPCRGFTPQLIE 52
>pdb|1QK8|A Chain A, Tryparedoxin-I From Crithidia Fasciculata
pdb|1O7U|A Chain A, Radiation Induced Tryparedoxin-I
pdb|1O85|A Chain A, Radiation-Reduced Tryparedoxin-I
pdb|1O8W|A Chain A, Radiation-Reduced Tryparedoxin-I
Length = 146
Score = 29.3 bits (64), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 15 SKIVFFYSSGVWCHHCEQFLPSSVD 39
K+VFFY S WC C F P ++
Sbjct: 28 GKLVFFYFSASWCPPCRGFTPQLIE 52
>pdb|1EZK|A Chain A, Crystal Structure Of Recombinant Tryparedoxin I
Length = 153
Score = 29.3 bits (64), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 15 SKIVFFYSSGVWCHHCEQFLPSSVD 39
K+VFFY S WC C F P ++
Sbjct: 27 GKLVFFYFSASWCPPCRGFTPQLIE 51
>pdb|1EWX|A Chain A, Crystal Structure Of Native Tryparedoxin I From
Crithidia Fasciculata
Length = 146
Score = 29.3 bits (64), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 15 SKIVFFYSSGVWCHHCEQFLPSSVD 39
K+VFFY S WC C F P ++
Sbjct: 28 GKLVFFYFSASWCPPCRGFTPQLIE 52
>pdb|1I5G|A Chain A, Tryparedoxin Ii Complexed With Glutathionylspermidine
Length = 144
Score = 29.3 bits (64), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 15/33 (45%)
Query: 15 SKIVFFYSSGVWCHHCEQFLPSSVDDLLLHSRK 47
K VFFY S WC F P +D H+ K
Sbjct: 28 GKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEK 60
>pdb|2EPS|A Chain A, Solution Structure Of The 4th Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 54
Score = 28.9 bits (63), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 85 DKPFVCEHCFSNFARLRRLKEHILRMH 111
KP++C+ C F+R L HI ++H
Sbjct: 10 GKPYICQSCGKGFSRPDHLNGHIKQVH 36
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 28.1 bits (61), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 60 YVCCICD-YKSYKKS-HMRDHIQSHLGDKPFVC--EHCFSNFARLRRLKEHIL 108
Y+C D +Y K+ ++ H+ H G+KPF C E C F L L H L
Sbjct: 13 YICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSL 65
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 60 YVCCICDYKSYKKSHMRDHIQSHLGDKP 87
Y C +C +K+H+ H ++H G+KP
Sbjct: 13 YECKVCSKAFTQKAHLAQHQKTHTGEKP 40
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
603- 635) Of Human Zinc Finger Protein 484
Length = 46
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 60 YVCCICDYKSYKKSHMRDHIQSHLGDKP 87
Y C IC KKS + H Q H G+KP
Sbjct: 13 YECSICGKSFTKKSQLHVHQQIHTGEKP 40
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Zinc Finger Protein 24
Length = 72
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 60 YVCCICDYKSYKKSHMRDHIQSHLGDKPFVCEHCFSNFARLRRLKEHILRMH 111
Y C C + S + H + H G+KP+ C C F++ L H R+H
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH-QRIH 65
>pdb|2EOS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
626- 654) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 85 DKPFVCEHCFSNFARLRRLKEHILRMH 111
+KP+ CE C + F L+ LK H LR+H
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSH-LRIH 34
>pdb|2EN2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
598- 626) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 85 DKPFVCEHCFSNFARLRRLKEHIL 108
+KP+ CE C + F ++ L+ H+L
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHVL 32
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2
Domain Of Zinc Finger Protein 435
Length = 77
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 60 YVCCICDYKSYKKSHMRDHIQSHLGDKPFVCEHCFSNF 97
Y C C S + H ++H G+KP+ C+ C F
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAF 56
>pdb|1X5W|A Chain A, Solution Structure Of The C2h2 Type Zinc-Binding Domain Of
Human Zinc Finger Protein 64, Isoforms 1 And 2
Length = 70
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 24/43 (55%)
Query: 72 KSHMRDHIQSHLGDKPFVCEHCFSNFARLRRLKEHILRMHPEL 114
K+ +R H + H D+PF C +C + + L +H+ + H ++
Sbjct: 22 KAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDM 64
>pdb|1O8X|A Chain A, Mutant Tryparedoxin-I Cys43ala
Length = 146
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 15 SKIVFFYSSGVWCHHCEQFLPSSVD 39
K+VFFY S WC F P ++
Sbjct: 28 GKLVFFYFSASWCPPARGFTPQLIE 52
>pdb|2D9H|A Chain A, Solution Structure Of The Forth And Fifth Zf-C2h2 Domains
Of Zinc Finger Protein 692
Length = 78
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Query: 57 SYNYVCCICDYKSYKKS----HMRDHIQSHLGDKPFVCEHCFSNFARLRRLKEHILRMHP 112
S C IC + +K+ H R H ++ + F CE C F + + H + HP
Sbjct: 5 SSGLQCEICGFTCRQKASLNWHQRKHAETVAALR-FPCEFCGKRFEKPDSVAAHRSKSHP 63
Query: 113 ELI 115
L+
Sbjct: 64 ALL 66
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 60 YVCCICDYKSYKKSHMRDHIQSHLGDKP 87
Y+C C +KSH+ H + H G+KP
Sbjct: 13 YICNECGKSFIQKSHLNRHRRIHTGEKP 40
>pdb|3E15|A Chain A, 6-Phosphogluconolactonase From Plasmodium Vivax
pdb|3E15|B Chain B, 6-Phosphogluconolactonase From Plasmodium Vivax
pdb|3E15|C Chain C, 6-Phosphogluconolactonase From Plasmodium Vivax
pdb|3E15|D Chain D, 6-Phosphogluconolactonase From Plasmodium Vivax
Length = 312
Score = 26.2 bits (56), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Query: 9 NFRICYSKIVFFYSSGVWCHHCEQFLPSSVDDLLLHSRKCASA---HRPDKSYNYVCCIC 65
+ +I SK++FF + +F + L S K +RPD S N V C+
Sbjct: 84 DIKIDTSKLIFFIIDERYKRDDHKFSNYNNIKFLFESLKINEKEQLYRPDTSKNIVECVR 143
Query: 66 DYKSYKKSHMRDHIQSHLG 84
DY K+ ++ + + +
Sbjct: 144 DYNEKIKNXVKKYTKVDIA 162
>pdb|1O73|A Chain A, Tryparedoxin From Trypanosoma Brucei
Length = 144
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 10/21 (47%)
Query: 15 SKIVFFYSSGVWCHHCEQFLP 35
K VF Y S WC C F P
Sbjct: 28 GKTVFLYFSASWCPPCRGFTP 48
>pdb|2EOO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
425- 457) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 85 DKPFVCEHCFSNFARLRRLKEHILR 109
++P+ C C NF R L EH+ R
Sbjct: 10 ERPYGCNECGKNFGRHSHLIEHLKR 34
>pdb|1NCS|A Chain A, Nmr Study Of Swi5 Zinc Finger Domain 1
Length = 47
Score = 25.8 bits (55), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 54 PDKSYNYVCCICDYKSYKKSHMRDHIQSHLGDK 86
PDK++ + C ++ ++R HIQ+HL D+
Sbjct: 15 PDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 25.8 bits (55), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 60 YVCCICDYKSYKKSHMRDHIQSHLGDKP 87
Y C +C + + SH++ H + H G+KP
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
>pdb|2LVU|A Chain A, Solution Structure Of Miz-1 Zinc Finger 10
Length = 26
Score = 25.4 bits (54), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 86 KPFVCEHCFSNFARLRRLKEHI 107
KP+VCE C F + +L HI
Sbjct: 1 KPYVCERCGKRFVQSSQLANHI 22
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.331 0.140 0.481
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,690,014
Number of Sequences: 62578
Number of extensions: 133573
Number of successful extensions: 560
Number of sequences better than 100.0: 99
Number of HSP's better than 100.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 399
Number of HSP's gapped (non-prelim): 167
length of query: 115
length of database: 14,973,337
effective HSP length: 78
effective length of query: 37
effective length of database: 10,092,253
effective search space: 373413361
effective search space used: 373413361
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 45 (21.9 bits)