RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13445
(115 letters)
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 44.3 bits (105), Expect = 2e-07
Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
Query: 60 YVCCICDYKSYKKSHMRDHIQSH---LGDKPFVCEHCFSNFARLRRLKEHILRMHPE 113
C IC + +K+ + H + H + F CE C F + + H + HP
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPA 64
Score = 26.6 bits (59), Expect = 0.90
Identities = 8/30 (26%), Positives = 9/30 (30%), Gaps = 1/30 (3%)
Query: 82 HLGDKPFVCEHCFSNFARLRRLKEHILRMH 111
G CE C + L H R H
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQ-RKH 30
Score = 24.3 bits (53), Expect = 5.7
Identities = 4/34 (11%), Positives = 8/34 (23%)
Query: 60 YVCCICDYKSYKKSHMRDHIQSHLGDKPFVCEHC 93
+ C C + K + H +
Sbjct: 39 FPCEFCGKRFEKPDSVAAHRSKSHPALLLAPQES 72
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 42.0 bits (98), Expect = 1e-06
Identities = 14/54 (25%), Positives = 26/54 (48%)
Query: 60 YVCCICDYKSYKKSHMRDHIQSHLGDKPFVCEHCFSNFARLRRLKEHILRMHPE 113
Y+C C + K S ++ HI++H +P+ C +C +F L +H+
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHS 55
Score = 25.4 bits (55), Expect = 1.6
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 60 YVCCICDYKSYKKSHMRDHIQSHLGDK 86
Y C C++ K ++ H++S K
Sbjct: 30 YHCTYCNFSFKTKGNLTKHMKSKAHSK 56
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 41.4 bits (98), Expect = 2e-06
Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 60 YVCCICDYKSYKKSHMRDHIQSHLG--DKPFVCEHCFSNFARLRRLKEHILRMH 111
Y C IC + + M+ HI F C HC + AR L H+ + H
Sbjct: 16 YECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQH 69
Score = 34.4 bits (80), Expect = 9e-04
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 5/40 (12%)
Query: 72 KSHMRDHIQSHLGDKPFVCEHCFSNFARLRRLKEHILRMH 111
S R +H G+KP+ C C + F + +K HI
Sbjct: 4 GSSGR----THSGEKPYECYICHARFTQSGTMKMHI-LQK 38
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 40.6 bits (96), Expect = 4e-06
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 60 YVCCICDYKSYKKSHMRDHIQSHLGDKPFVCEHCFSNFARLRRLKEHILRMH 111
C C Y K+ +R H + H D+PF C +C + + L +H ++
Sbjct: 10 EKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKH-MKKF 60
Score = 26.3 bits (59), Expect = 0.77
Identities = 6/29 (20%), Positives = 14/29 (48%)
Query: 60 YVCCICDYKSYKKSHMRDHIQSHLGDKPF 88
+ C C + + + S++ H++ GD
Sbjct: 38 FKCNYCSFDTKQPSNLSKHMKKFHGDMSG 66
Score = 25.2 bits (56), Expect = 2.5
Identities = 8/31 (25%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 81 SHLGDKPFVCEHCFSNFARLRRLKEHILRMH 111
S P C C + + L+ H R+H
Sbjct: 3 SGSSGHPEKCSECSYSCSSKAALRIH-ERIH 32
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 39.0 bits (92), Expect = 1e-05
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 60 YVCCICDYKSY-KKSHMRDHIQSHLGDKPFVCEHCFSNFARLRRLKEHILRMH 111
+VC +C +++ ++ H++ H +SH +KP+ C C F R L H ++H
Sbjct: 3 FVCEVCT-RAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 37.5 bits (88), Expect = 6e-05
Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 5/55 (9%)
Query: 60 YVCCICDYKSYK-KSHMRDH--IQSHLGDKPFVCEHCFSNFARLRRLKEHILRMH 111
Y C +C + Y S+ H K + C CF F R + H+ ++
Sbjct: 11 YRCKVCS-RVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHV-KII 63
Score = 27.5 bits (62), Expect = 0.34
Identities = 5/30 (16%), Positives = 11/30 (36%)
Query: 82 HLGDKPFVCEHCFSNFARLRRLKEHILRMH 111
G+ + C+ C + + H + H
Sbjct: 5 KEGEHTYRCKVCSRVYTHISNFCRHYVTSH 34
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 37.9 bits (89), Expect = 6e-05
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 60 YVCCICDYKSY-KKSHMRDHIQSHLGDKPFVCEHCFSNFARLRRLKEHILRMHPE 113
+ C IC +++ + H+ HI++H G+KPF C+ C FAR K H +
Sbjct: 4 FQCRICM-RNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHR-DIQHI 56
Score = 31.7 bits (73), Expect = 0.014
Identities = 8/51 (15%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
Query: 60 YVCCICDYKSYKKSHMRDHIQSHLGDKPFVCEHCFSNFARLRRLKEHILRM 110
+ C IC K + + H P + + ++ L+ + R+
Sbjct: 32 FACDICGRKFARSDERKRHRDIQ-HILPILEDKVEELLSKNYHLENEVARL 81
Score = 25.5 bits (57), Expect = 2.5
Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 86 KPFVCEHCFSNFARLRRLKEHILRMH 111
KPF C C NF+R L HI R H
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHI-RTH 26
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 37.4 bits (87), Expect = 7e-05
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
Query: 45 SRKCASAHRPDKSYNYVCCI--CDYKSYKKSHMRDHIQSHLGDKPFVCEH--CFSNFARL 100
S + +++C C +K SH++ H ++H G+KPF C C FAR
Sbjct: 3 SGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARS 62
Query: 101 RRLKEHILRMH 111
L H R H
Sbjct: 63 DELSRH-RRTH 72
Score = 26.6 bits (59), Expect = 0.70
Identities = 9/42 (21%), Positives = 13/42 (30%), Gaps = 3/42 (7%)
Query: 72 KSHMRDHIQSHLGDKPFVCEH--CFSNFARLRRLKEHILRMH 111
S + +C H C + + LK H R H
Sbjct: 2 SSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAH-TRTH 42
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 36.1 bits (84), Expect = 2e-04
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 51 AHRPDKSYNYVCCI--CDYKSYKKSHMRDHIQSHLGDKPFVCEHCFSNFARLRRLKEHIL 108
+ K Y C + CD + + + HI+ H G KPF C C NF+R L HI
Sbjct: 11 NYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI- 69
Query: 109 RMH 111
R H
Sbjct: 70 RTH 72
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 35.9 bits (84), Expect = 3e-04
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 60 YVCCICDYKSY-KKSHMRDHIQSHLGDKPFVCEHCFSNFARLRRLKEHILRMH 111
+ C IC +++ + H+ HI++H G+KPF C+ C FAR K H ++H
Sbjct: 35 FQCRICM-RNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHT-KIH 85
Score = 35.5 bits (83), Expect = 4e-04
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 73 SHMRDHIQSHLGDKPFVCEHCFSNFARLRRLKEHILRMH 111
+ HI+ H G KPF C C NF+R L HI R H
Sbjct: 20 GSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI-RTH 57
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 34.0 bits (79), Expect = 6e-04
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 78 HIQSHLGDKPFVCEHCFSNFARLRRLKEHILRMH 111
S G+KP+ CE C + F L+ LK H+ R+H
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHL-RIH 34
Score = 24.0 bits (53), Expect = 3.9
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 60 YVCCICDYKSYK-KSHMRDHIQSHLGDKPF 88
Y C IC ++ ++ H++ H G P
Sbjct: 12 YPCEICG-TRFRHLQTLKSHLRIHTGSGPS 40
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 35.6 bits (83), Expect = 8e-04
Identities = 14/52 (26%), Positives = 29/52 (55%)
Query: 60 YVCCICDYKSYKKSHMRDHIQSHLGDKPFVCEHCFSNFARLRRLKEHILRMH 111
+ C +C ++ +R H+ SH G+ P+ C C F + + L+ H++++H
Sbjct: 67 FTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLH 118
Score = 30.9 bits (71), Expect = 0.036
Identities = 16/47 (34%), Positives = 22/47 (46%)
Query: 60 YVCCICDYKSYKKSHMRDHIQSHLGDKPFVCEHCFSNFARLRRLKEH 106
C C K K +++ H + H G+KPF C C + R L EH
Sbjct: 8 VECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEH 54
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 35.1 bits (80), Expect = 8e-04
Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 4/75 (5%)
Query: 42 LLHSRKCASAHRPDKSYNYVCCICDYKSYKKSHMRDHIQS-HLG---DKPFVCEHCFSNF 97
+ H + Y C C +++ + H+ S H + +VC C
Sbjct: 1 MAHHHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLT 60
Query: 98 ARLRRLKEHILRMHP 112
R L EH L+ HP
Sbjct: 61 KRYDALSEHNLKYHP 75
Score = 26.3 bits (57), Expect = 1.6
Identities = 8/43 (18%), Positives = 17/43 (39%)
Query: 73 SHMRDHIQSHLGDKPFVCEHCFSNFARLRRLKEHILRMHPELI 115
H + Q+ + + C++C L H+ HP ++
Sbjct: 4 HHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVV 46
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 34.8 bits (81), Expect = 0.001
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 73 SHMRDHIQSHLGDKPFVCEHCFSNFARLRRLKEHILRMH 111
++ H + H G KPF C+ C F+R LK H R H
Sbjct: 52 DQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHT-RTH 89
Score = 32.9 bits (76), Expect = 0.007
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 60 YVCCICDYKSYKKSHMRDHIQSHLGDKPFVCE--HCFSNFARLRRLKEHILRMH 111
+ C C K + H++ H ++H G+KPF C C FAR L H MH
Sbjct: 67 FQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHH-NMH 119
Score = 31.0 bits (71), Expect = 0.037
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 71 KKSHMRDHIQSHLGDKPFVCE--HCFSNFARLRRLKEHILRMH 111
K SH++ H + H G+KP+ C+ C F+R +LK H R H
Sbjct: 20 KLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQ-RRH 61
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 34.2 bits (78), Expect = 0.002
Identities = 10/67 (14%), Positives = 21/67 (31%), Gaps = 4/67 (5%)
Query: 27 CHHCEQFLPSSVDDLLLHSRKCASAHRPDKSYN---YVCCICDYKSYKKSHMRDHIQSHL 83
C++ + +L+ H ++ C K + +HI+ H
Sbjct: 28 KKSCDRTFSTM-HELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHT 86
Query: 84 GDKPFVC 90
G+K
Sbjct: 87 GEKSGPS 93
Score = 26.9 bits (59), Expect = 0.78
Identities = 5/30 (16%), Positives = 9/30 (30%)
Query: 82 HLGDKPFVCEHCFSNFARLRRLKEHILRMH 111
+ C F+ + L H+ H
Sbjct: 20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEH 49
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 33.8 bits (78), Expect = 0.002
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 73 SHMRDHIQSHLGDKPFVCEHCFSNFARLRRLKEHILRMH 111
+ H + H G KPF C C +F+R L H+ + H
Sbjct: 61 DELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHM-KRH 98
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 32.6 bits (75), Expect = 0.003
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 78 HIQSHLGDKPFVCEHCFSNFARLRRLKEHILRMH 111
S KP++C+ C F+R L HI ++H
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVH 36
Score = 30.6 bits (70), Expect = 0.014
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 6/42 (14%)
Query: 60 YVCCICDYKSYK-KSHMRDHIQS-HLGDKPFVCEHC---FSN 96
Y+C C K + H+ HI+ H ++P C+ S+
Sbjct: 13 YICQSCG-KGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 34.1 bits (79), Expect = 0.003
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 73 SHMRDHIQSHLGDKPFVCEH--CFSNFARLRRLKEHILRMH 111
+++ H++SH G+KP++CEH C F+ +H R H
Sbjct: 83 ENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTH 123
Score = 27.2 bits (61), Expect = 0.88
Identities = 14/60 (23%), Positives = 19/60 (31%), Gaps = 9/60 (15%)
Query: 60 YVCCICDYKSYKKSHMRDHIQS---HLGDKPFVCEHCFSN-----FARLRRLKEHILRMH 111
C + + + HI S H K FVC + F L H+ R H
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHM-RRH 62
Score = 26.8 bits (60), Expect = 1.5
Identities = 6/26 (23%), Positives = 8/26 (30%)
Query: 86 KPFVCEHCFSNFARLRRLKEHILRMH 111
+ C F +L HI H
Sbjct: 2 TDCRWDGCSQEFDSQEQLVHHINSEH 27
Score = 24.5 bits (54), Expect = 8.0
Identities = 10/45 (22%), Positives = 21/45 (46%), Gaps = 6/45 (13%)
Query: 69 SYKKSHMRDHIQSHLGDKPFVCEH--CFSNFARLRRLKEHILRMH 111
S + H ++H +KP+VC+ C + L++H+ +
Sbjct: 113 SDRAKHQN---RTHSNEKPYVCKLPGCTKRYTDPSSLRKHV-KTV 153
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 33.6 bits (76), Expect = 0.005
Identities = 15/87 (17%), Positives = 32/87 (36%), Gaps = 4/87 (4%)
Query: 27 CHHCEQFLPSSVDDLLLHSRKCASAHRPDKSY-NYVCCICDYKSYKKSHMRDHIQSHLGD 85
C C + V+ L +H + + H D ++ + +K + +
Sbjct: 22 CKDCSAAYDTLVE-LTVHMNE--TGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQ 78
Query: 86 KPFVCEHCFSNFARLRRLKEHILRMHP 112
K C +C +F L+ L H+++
Sbjct: 79 KVLKCMYCGHSFESLQDLSVHMIKTKH 105
Score = 27.4 bits (60), Expect = 0.77
Identities = 8/34 (23%), Positives = 13/34 (38%)
Query: 73 SHMRDHIQSHLGDKPFVCEHCFSNFARLRRLKEH 106
S + + G F C+ C + + L L H
Sbjct: 5 SSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVH 38
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 31.8 bits (72), Expect = 0.006
Identities = 10/35 (28%), Positives = 13/35 (37%)
Query: 59 NYVCCICDYKSYKKSHMRDHIQSHLGDKPFVCEHC 93
C IC H+ H SH G+KP+
Sbjct: 12 QVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 24.5 bits (53), Expect = 3.5
Identities = 9/28 (32%), Positives = 10/28 (35%)
Query: 81 SHLGDKPFVCEHCFSNFARLRRLKEHIL 108
S K CE C F + L H L
Sbjct: 6 SGRTRKQVACEICGKIFRDVYHLNRHKL 33
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 31.3 bits (72), Expect = 0.007
Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 78 HIQSHLGDKPFVCEHCFSNFARLRRLKEHILRMH 111
S G+KP+ CE C + F ++ L+ H+ +H
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHV-LIH 34
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 32.5 bits (75), Expect = 0.007
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 60 YVCCICDYKSYK-KSHMRDHIQSHLGDKPFVCEHCFSNFARLRRLKEHILRMH 111
C IC K ++ H+ H SH G+KP+ C C F R R+ H+ R H
Sbjct: 8 VACEICG-KIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHV-RSH 58
Score = 30.9 bits (71), Expect = 0.023
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 60 YVCCICDYKSYK-KSHMRDHIQSHLG--DKPFVCEHCFSNFARLRRLKEHILRMH 111
Y C +C +K K M H++SH G KP++C+ C F+R L HI ++H
Sbjct: 36 YSCPVCG-LRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVH 89
Score = 24.4 bits (54), Expect = 6.5
Identities = 8/30 (26%), Positives = 9/30 (30%), Gaps = 1/30 (3%)
Query: 82 HLGDKPFVCEHCFSNFARLRRLKEHILRMH 111
G CE C F + L H H
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRH-KLSH 30
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 30.8 bits (70), Expect = 0.010
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 78 HIQSHLGDKPFVCEHCFSNFARLRRLKEHILR 109
+ G KPF C C +F+R L H R
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKR 33
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 30.6 bits (70), Expect = 0.013
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 78 HIQSHLGDKPFVCEHCFSNFARLRRLKEHILRMH 111
S G+KPF C+ C NF+ L +H LR H
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKH-LRSH 35
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 30.7 bits (70), Expect = 0.014
Identities = 13/36 (36%), Positives = 15/36 (41%), Gaps = 3/36 (8%)
Query: 78 HIQSHLGDKPFVCEH--CFSNFARLRRLKEHILRMH 111
S G+KPF C C F+R L H R H
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRH-RRSH 37
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692,
structural genomics, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 79
Score = 31.0 bits (71), Expect = 0.021
Identities = 6/22 (27%), Positives = 14/22 (63%)
Query: 72 KSHMRDHIQSHLGDKPFVCEHC 93
K H+++H++ H + ++CE
Sbjct: 53 KKHLKEHMKLHSDTRDYICEFS 74
Score = 29.1 bits (66), Expect = 0.11
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 6/46 (13%)
Query: 68 KSYKKSHMRDHIQSHLGDKPFVCEH--CFSNFARLRRLKEHILRMH 111
+ Y H + H+ K F C C +F + LKEH+ ++H
Sbjct: 22 RQYLNHHKK---YQHIHQKSFSCPEPACGKSFNFKKHLKEHM-KLH 63
Score = 23.7 bits (52), Expect = 9.7
Identities = 7/32 (21%), Positives = 10/32 (31%), Gaps = 2/32 (6%)
Query: 82 HLGDKPFVCEH--CFSNFARLRRLKEHILRMH 111
G C+ C F+ + L H H
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQH 33
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 31.1 bits (71), Expect = 0.021
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 68 KSYKK-SHMRDHIQSHLGDKPFVCEH--CFSNFARLRRLKEH 106
K++KK + ++ H SH P+ C H C F+ RLK H
Sbjct: 11 KAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRH 52
Score = 27.6 bits (62), Expect = 0.36
Identities = 7/39 (17%), Positives = 13/39 (33%)
Query: 73 SHMRDHIQSHLGDKPFVCEHCFSNFARLRRLKEHILRMH 111
S ++ H + H G + C +H+ H
Sbjct: 47 SRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 85
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 31.2 bits (72), Expect = 0.022
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 60 YVCCICDYKSYKKSHMRDHIQSHLGDKPFVCEHCFSNFARLRRLKEHILRMH 111
+ C +C +K ++ H++ H G KP+ C+ C A L +H LR+H
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKH-LRIH 59
Score = 30.5 bits (70), Expect = 0.039
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 60 YVCCICDYKSYKKSHMRDHIQSHLGDKPFVCEHCFSNFARLRRLKEHILRMH 111
Y C CDY + S + H++ H ++PF C+ C +L H LR H
Sbjct: 37 YKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVH-LRSH 87
Score = 26.6 bits (60), Expect = 1.0
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 60 YVCCICDYKSYKKSHMRDHIQSHLGDKPFVC 90
+ C IC Y S S + H++SH GD
Sbjct: 65 FKCQICPYASRNSSQLTVHLRSHTGDSGPSS 95
Score = 25.1 bits (56), Expect = 3.5
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 81 SHLGDKPFVCEHCFSNFARLRRLKEHILRMH 111
S P CE C F+R +LK H+ R H
Sbjct: 2 SSGSSGPHKCEVCGKCFSRKDKLKTHM-RCH 31
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 31.9 bits (73), Expect = 0.023
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 72 KSHMRDHIQSHLGDKPFVCEH--CFSNFARLRRLKEHILRMH 111
K + +HI+ H G+KPF C C FAR LK H R H
Sbjct: 75 KYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIH-KRTH 115
Score = 29.6 bits (67), Expect = 0.14
Identities = 6/44 (13%), Positives = 11/44 (25%), Gaps = 2/44 (4%)
Query: 68 KSYKKSHMRDHIQSHLGDKPFVCEHCFSNFARLRRLKEHILRMH 111
K + + C F+ + L H+ M
Sbjct: 7 GQPIKQELS-CKWIDEAQLSRPKKSCDRTFSTMHELVTHV-TME 48
Score = 27.3 bits (61), Expect = 0.89
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 73 SHMRDHIQSHLGDKPFVCEH--CFSNFARLRRLKEHILRMH 111
+++ H ++H G+KPF CE C FA K+H+ +H
Sbjct: 106 ENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHM-HVH 145
Score = 27.3 bits (61), Expect = 0.92
Identities = 11/61 (18%), Positives = 16/61 (26%), Gaps = 10/61 (16%)
Query: 60 YVCCICDYKSYKKSHMRDHIQSHLGDKPFV---------CEHCFSNFARLRRLKEHILRM 110
CD + H+ P C +F +L HI R+
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHI-RV 84
Query: 111 H 111
H
Sbjct: 85 H 85
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 31.0 bits (71), Expect = 0.024
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 73 SHMRDHIQSHLGDKPFVCEHCFSNFARLRRLKEHILRMH 111
+ H + H G +PF C+ C F+R L H+ + H
Sbjct: 51 DELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHM-KRH 88
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 31.3 bits (72), Expect = 0.024
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 72 KSHMRDHIQSHLGDKPFVCEHCFSNFARLRRLKEHILRMH 111
S MR H+ +H G + VC C F +LK H +H
Sbjct: 20 NSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQ-LVH 57
Score = 28.6 bits (65), Expect = 0.23
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 72 KSHMRDHIQSHLGDKPFVCEH--CFSNFARLRRLKEHILRMH 111
++R H++ H GD+P+VC C FA+ LK HI H
Sbjct: 77 DFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHI-LTH 117
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 30.5 bits (70), Expect = 0.028
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 60 YVCCICDYKSYK-KSHMRDHIQSHLGDKPFVCEHCFSNFARLRRLKEHILRMH 111
Y C C S++ K ++ H H G+KP+ C C + F R LK H R+H
Sbjct: 18 YKCDRCQ-ASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTH-TRIH 68
Score = 28.2 bits (64), Expect = 0.20
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 73 SHMRDHIQSHLGDKPFVCEHCFSNFARLRRLKEH 106
H H DKP+ C+ C ++F L H
Sbjct: 3 HHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASH 36
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 31.1 bits (69), Expect = 0.038
Identities = 17/85 (20%), Positives = 27/85 (31%), Gaps = 10/85 (11%)
Query: 27 CHHCEQFLPSSVDDLLLHSRKCASAHRPDKSYNYVCCICDYKSYKKSHMRDHIQSHLGDK 86
H Q L S L + K +VC +C ++ HI+ +
Sbjct: 50 LIHNPQLLDESSYLYRLLASK--------AISQFVCPLCLMPFSSSVSLKQHIRYT--EH 99
Query: 87 PFVCEHCFSNFARLRRLKEHILRMH 111
VC C F +H+ + H
Sbjct: 100 TKVCPVCKKEFTSTDSALDHVCKKH 124
Score = 28.7 bits (63), Expect = 0.24
Identities = 13/75 (17%), Positives = 27/75 (36%), Gaps = 1/75 (1%)
Query: 37 SVDDLLLHSRKCASAHRPDKSYNYVCCICDYKSYKKSHMRDHIQSHLGDKPFVCEHCFSN 96
++++L + + R ++ + S++ + S FVC C
Sbjct: 25 TLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAI-SQFVCPLCLMP 83
Query: 97 FARLRRLKEHILRMH 111
F+ LK+HI
Sbjct: 84 FSSSVSLKQHIRYTE 98
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 30.6 bits (68), Expect = 0.045
Identities = 19/87 (21%), Positives = 31/87 (35%), Gaps = 10/87 (11%)
Query: 27 CHHCEQFLPSSVDDLLLHSRKCASAHRPDKSYNYVCCICDYKSYKKSHMRDHIQSHLGDK 86
C C L S ++ H R C +A VC C + + ++H +S K
Sbjct: 19 CRLCNAKLSSLLE-QGSHERLCRNA--------AVCPYCSLRFFSPELKQEH-ESKCEYK 68
Query: 87 PFVCEHCFSNFARLRRLKEHILRMHPE 113
C C F + H + +H +
Sbjct: 69 KLTCLECMRTFKSSFSIWRHQVEVHNQ 95
Score = 25.2 bits (54), Expect = 3.7
Identities = 13/58 (22%), Positives = 20/58 (34%), Gaps = 3/58 (5%)
Query: 50 SAHRPDKSYN-YVCCICDYKSYKKSHMRDHIQSHLGDKPFVCEHCFSNFARLRRLKEH 106
S P ++ Y C +C+ K H + VC +C F +EH
Sbjct: 6 SGASPVENKEVYQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEH 61
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 29.8 bits (68), Expect = 0.060
Identities = 13/56 (23%), Positives = 17/56 (30%), Gaps = 5/56 (8%)
Query: 60 YVCCICD----YKSYKKSHMRDHIQSHLGDKPFVCEHCFSNFARLRRLKEHILRMH 111
Y C CD K H + + + FVC C F R + H
Sbjct: 16 YACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARH-ADNC 70
Score = 28.6 bits (65), Expect = 0.14
Identities = 7/34 (20%), Positives = 13/34 (38%)
Query: 60 YVCCICDYKSYKKSHMRDHIQSHLGDKPFVCEHC 93
+VC C +++ M H + G E+
Sbjct: 48 FVCSKCGKTFTRRNTMARHADNCAGPDGVEGENS 81
Score = 27.1 bits (61), Expect = 0.53
Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 74 HMRDHIQSHLGDKPFVCEHCFSNFARLRRLKEHILRMH 111
++H G+KP+ C HC F + + L H + +
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMH-FKRY 38
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 28.7 bits (64), Expect = 0.079
Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 78 HIQSHLGDKPFVCEHCFSNFARLRRLKEHILRMH 111
S G+ PF C C F + L +H R H
Sbjct: 3 SGSSGAGENPFKCSKCDRVFTQRNYLVQH-ERTH 35
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin,
endoplasmic reticulum, oxidoreducta; 2.40A {Mus
musculus}
Length = 780
Score = 30.5 bits (68), Expect = 0.095
Identities = 6/29 (20%), Positives = 9/29 (31%), Gaps = 4/29 (13%)
Query: 9 NFRICYSKIVF--FYSSGVWCHHCEQFLP 35
NF + F++ W LP
Sbjct: 449 NFPASDKEPWLVDFFAP--WSPPSRALLP 475
Score = 26.6 bits (58), Expect = 2.1
Identities = 6/19 (31%), Positives = 9/19 (47%), Gaps = 2/19 (10%)
Query: 17 IVFFYSSGVWCHHCEQFLP 35
+V FY+ W + F P
Sbjct: 679 VVDFYAP--WSGPSQNFAP 695
Score = 25.5 bits (55), Expect = 5.8
Identities = 7/19 (36%), Positives = 10/19 (52%), Gaps = 2/19 (10%)
Query: 17 IVFFYSSGVWCHHCEQFLP 35
+V FYS W H + +P
Sbjct: 567 MVDFYSP--WSHPSQVLMP 583
>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold,
structural genomics, PSI-2, protein structu initiative;
2.00A {Bacteroides fragilis}
Length = 142
Score = 29.6 bits (67), Expect = 0.13
Identities = 6/31 (19%), Positives = 11/31 (35%), Gaps = 2/31 (6%)
Query: 17 IVFFYSSGVWCHHCEQFLPSSVDDLLLHSRK 47
++FFY C +C +F +
Sbjct: 31 MLFFYDP--DCSNCRKFEKLFAEIPAFVEMV 59
>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin,
thioredoxin fold, oxidoreductase, reductive
methylation; HET: MLY; 2.05A {Homo sapiens}
Length = 244
Score = 30.0 bits (67), Expect = 0.14
Identities = 9/22 (40%), Positives = 12/22 (54%), Gaps = 2/22 (9%)
Query: 14 YSKIVFFYSSGVWCHHCEQFLP 35
+ V F++S WC HC F P
Sbjct: 31 SAWAVEFFAS--WCGHCIAFAP 50
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 29.3 bits (67), Expect = 0.16
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 60 YVCCICDYKSY-KKSHMRDHIQSHLGDKPFVCEHCFSNFARLRRLKEHILRMH 111
Y C C KS+ + H+ +H ++H G+KP+ C C +F+ + L H R H
Sbjct: 22 YACPECG-KSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRH-QRTH 72
Score = 28.6 bits (65), Expect = 0.36
Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
Query: 60 YVCCICDYKSY-KKSHMRDHIQSHLGDKPFVCEHCFSNFARLRRLKEHILRMH 111
Y C C KS+ +++++R H ++H G+KP+ C C +F++L L+ H R H
Sbjct: 78 YKCPECG-KSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAH-QRTH 128
Score = 27.8 bits (63), Expect = 0.65
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 60 YVCCICDYKSYKKSHMRDHIQSHLGDKPFVCEHCFSNFARLRRLKEHILRMH 111
Y C C + +H+R H ++H G+KP+ C C +F+R L H R H
Sbjct: 106 YACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTH-QRTH 156
Score = 27.4 bits (62), Expect = 0.94
Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 72 KSHMRDHIQSHLGDKPFVCEHCFSNFARLRRLKEHILRMH 111
S G+KP+ C C +F+R L EH R H
Sbjct: 6 SSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEH-QRTH 44
Score = 27.0 bits (61), Expect = 1.2
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 60 YVCCICDYKSYKKSHMRDHIQSHLGDKPFVCEHCFSNFARLRRLKEHILRMH 111
Y C C ++ ++ H ++H G+KP+ C C +F+R L H R H
Sbjct: 134 YKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVH-QRTH 184
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 27.9 bits (62), Expect = 0.16
Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 54 PDKSYNYVCCI--CDYKSYKKSHMRDHIQSHLGDK 86
+ C C ++ ++R HIQ+HL D+
Sbjct: 13 EMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural
genomics, protein S initiative, midwest center for
structural genomics; HET: MSE; 1.30A {Bacteroides
fragilis}
Length = 142
Score = 29.2 bits (66), Expect = 0.19
Identities = 4/31 (12%), Positives = 12/31 (38%), Gaps = 2/31 (6%)
Query: 17 IVFFYSSGVWCHHCEQFLPSSVDDLLLHSRK 47
++F + CH C + + +++
Sbjct: 35 LLFINNP--GCHACAEMIEGLKASPVINGFT 63
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 28.6 bits (65), Expect = 0.24
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 60 YVCCICDYKSY-KKSHMRDHIQSHLGDKPFVCEHCFSNFARLRRLKEHILRMH 111
Y C IC K++ ++ H+RDH H +KPF C+ C F + R L H +H
Sbjct: 46 YTCDICH-KAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVH-KTLH 96
Score = 27.0 bits (61), Expect = 0.79
Identities = 10/40 (25%), Positives = 14/40 (35%), Gaps = 1/40 (2%)
Query: 72 KSHMRDHIQSHLGDKPFVCEHCFSNFARLRRLKEHILRMH 111
S K F+C+ C +F + L H R H
Sbjct: 2 SSGSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIH-ERTH 40
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 29.4 bits (65), Expect = 0.27
Identities = 6/41 (14%), Positives = 10/41 (24%), Gaps = 1/41 (2%)
Query: 71 KKSHMRDHIQSHLGDKPFVCEHCFSNFARLRRLKEHILRMH 111
K + + C C + L H + H
Sbjct: 164 KHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAH-VASH 203
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 28.3 bits (62), Expect = 0.29
Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 2/56 (3%)
Query: 60 YVCCICDYKSYKK-SHMRDHIQSHLGDKPFVCEHCFSNFARLRRLKEHILRMHPEL 114
C C K ++ H+++ + F C HC L +K H++ H L
Sbjct: 35 VSCPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVMANHNSL 89
>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide
bond, endoplasmic reticulum isomerase, redox-active
center; 1.95A {Homo sapiens} PDB: 2dj2_A
Length = 241
Score = 28.7 bits (64), Expect = 0.32
Identities = 9/19 (47%), Positives = 13/19 (68%), Gaps = 2/19 (10%)
Query: 17 IVFFYSSGVWCHHCEQFLP 35
++ FY+ WC HC+QF P
Sbjct: 36 LLEFYAP--WCGHCKQFAP 52
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 26.7 bits (58), Expect = 0.36
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 60 YVCCICDYKSYKKSHMRDHIQSHLGDK 86
Y C C Y S K+++ H++ H G+K
Sbjct: 10 YKCPQCSYASAIKANLNVHLRKHTGEK 36
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 26.5 bits (59), Expect = 0.37
Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 86 KPFVCEHCFSNFARLRRLKEHILRMH 111
+ FVCE C FAR LK H R H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHY-RSH 25
Score = 23.0 bits (50), Expect = 6.9
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 60 YVCCICDYKSYKKSHMRDHIQSHLGDK 86
+VC +C ++ H++ H +SH +K
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEK 29
>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A
{Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A
Length = 361
Score = 28.9 bits (64), Expect = 0.37
Identities = 9/19 (47%), Positives = 11/19 (57%), Gaps = 2/19 (10%)
Query: 17 IVFFYSSGVWCHHCEQFLP 35
V FY+ WC HC+Q P
Sbjct: 271 FVEFYAP--WCGHCKQLAP 287
>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation,
disulfide bonds tryparedoxin, thioredoxin, trypanosome;
1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB:
1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A
Length = 146
Score = 28.1 bits (63), Expect = 0.39
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 16 KIVFFYSSGVWCHHCEQFLPSSVD 39
K+VFFY S WC F P ++
Sbjct: 29 KLVFFYFSASWCPPARGFTPQLIE 52
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.7 bits (60), Expect = 0.43
Identities = 13/33 (39%), Positives = 15/33 (45%)
Query: 60 YVCCICDYKSYKKSHMRDHIQSHLGDKPFVCEH 92
Y C IC KKS + H Q H G+KP
Sbjct: 13 YECSICGKSFTKKSQLHVHQQIHTGEKPSGPSS 45
Score = 23.7 bits (52), Expect = 4.8
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 78 HIQSHLGDKPFVCEHCFSNFARLRRLKEH 106
S G+KP+ C C +F + +L H
Sbjct: 3 SGSSGTGEKPYECSICGKSFTKKSQLHVH 31
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 27.8 bits (63), Expect = 0.46
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 72 KSHMRDHIQSHLGDKPFVCEHCFSNFARLRRLKEHILRMH 111
KS H+ HLG +P+ C C F L H +++H
Sbjct: 22 KSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGH-MKIH 60
Score = 27.0 bits (61), Expect = 0.73
Identities = 15/48 (31%), Positives = 21/48 (43%)
Query: 60 YVCCICDYKSYKKSHMRDHIQSHLGDKPFVCEHCFSNFARLRRLKEHI 107
Y C +C K K H+ H++ H G KP+ C C F H+
Sbjct: 38 YGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHV 85
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 26.4 bits (59), Expect = 0.47
Identities = 8/30 (26%), Positives = 10/30 (33%)
Query: 77 DHIQSHLGDKPFVCEHCFSNFARLRRLKEH 106
S K + C C F R+ L H
Sbjct: 2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRH 31
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 26.3 bits (59), Expect = 0.48
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 78 HIQSHLGDKPFVCEHCFSNFARLRRLKEHILRMH 111
S G P+ C C +F+ RL H RMH
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVH-QRMH 35
Score = 24.8 bits (55), Expect = 2.1
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 60 YVCCICDYKSY-KKSHMRDHIQSHLGDKPFVC 90
Y C C+ KS+ K + H + H +KP
Sbjct: 13 YKCSQCE-KSFSGKLRLLVHQRMHTREKPSGP 43
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 27.6 bits (60), Expect = 0.53
Identities = 12/57 (21%), Positives = 20/57 (35%), Gaps = 2/57 (3%)
Query: 60 YVCCICDYKSYKKSH-MRDHIQS-HLGDKPFVCEHCFSNFARLRRLKEHILRMHPEL 114
VC C+ + K ++ H++ C+HC F L H + H
Sbjct: 25 AVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAK 81
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 26.9 bits (59), Expect = 0.56
Identities = 9/34 (26%), Positives = 11/34 (32%)
Query: 73 SHMRDHIQSHLGDKPFVCEHCFSNFARLRRLKEH 106
+ HLGD+ C C F R L
Sbjct: 4 GSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRR 37
Score = 23.9 bits (51), Expect = 7.8
Identities = 5/29 (17%), Positives = 10/29 (34%)
Query: 78 HIQSHLGDKPFVCEHCFSNFARLRRLKEH 106
+ K +CE C + + L +
Sbjct: 30 RRSTLSRRKTPMCEKCRKDSCQEAALNKD 58
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 27.9 bits (63), Expect = 0.59
Identities = 8/45 (17%), Positives = 15/45 (33%), Gaps = 6/45 (13%)
Query: 72 KSHMRDHIQSHLGD---KPFVCEHCFSNFARLRRLKEHILRMHPE 113
S ++ H + H G K C + + H+ H +
Sbjct: 149 PSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLK---HVAECHQD 190
Score = 27.9 bits (63), Expect = 0.60
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 71 KKSHMRDHIQSHLGDKPFVCEH--CFSNFARLRRLKEHILRMH 111
K ++ H+ H G+KPF C+ C F L L H H
Sbjct: 26 KNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHS-LTH 67
Score = 26.4 bits (59), Expect = 2.1
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
Query: 72 KSHMRDHIQSHLGDKPFVCEH--CFSNFARLRRLKEHILRMH 111
H+ H +H G+K F C+ C F +K+H
Sbjct: 57 LHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHF-NRF 97
Score = 26.0 bits (58), Expect = 2.7
Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 4/55 (7%)
Query: 56 KSYNYVCCI--CDYKSYKKSHMRDHIQSHLGDKPFVCEH--CFSNFARLRRLKEH 106
K YVC C K + ++ H SH P+ C H C F+ RLK H
Sbjct: 101 KICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRH 155
>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus
musculus} PDB: 3t59_A*
Length = 519
Score = 28.0 bits (61), Expect = 0.63
Identities = 8/22 (36%), Positives = 11/22 (50%), Gaps = 2/22 (9%)
Query: 14 YSKIVFFYSSGVWCHHCEQFLP 35
+ V F++S WC H F P
Sbjct: 31 SAWAVEFFAS--WCGHAIAFAP 50
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 27.7 bits (61), Expect = 0.65
Identities = 14/68 (20%), Positives = 21/68 (30%), Gaps = 13/68 (19%)
Query: 46 RKCASAHRPDKSYNYVCCICDYKSYKKSHMRDHIQSHLGDKPFVCEHCFSNFARLRRLKE 105
K A P+ + C C K Y + + GD VC C L +
Sbjct: 8 DKRAGRRGPNLNIVLTCPEC--KVYPPKIVERFSE---GD--VVCALCGL------VLSD 54
Query: 106 HILRMHPE 113
++ E
Sbjct: 55 KLVDTRSE 62
>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 133
Score = 27.3 bits (61), Expect = 0.71
Identities = 8/19 (42%), Positives = 12/19 (63%), Gaps = 2/19 (10%)
Query: 17 IVFFYSSGVWCHHCEQFLP 35
++ FY+ WC HC+Q P
Sbjct: 29 LIEFYAP--WCGHCKQLEP 45
>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola
insolens} SCOP: c.47.1.2 PDB: 2kp1_A
Length = 121
Score = 27.3 bits (61), Expect = 0.76
Identities = 7/19 (36%), Positives = 11/19 (57%), Gaps = 2/19 (10%)
Query: 17 IVFFYSSGVWCHHCEQFLP 35
++ FY+ WC HC+ P
Sbjct: 29 LIEFYAP--WCGHCKALAP 45
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 42
Score = 26.0 bits (58), Expect = 0.77
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 78 HIQSHLGDKPFVCEHCFSNFARLRRLKEHILRMH 111
S G+KP+ C+ C F++ L HI R+H
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHI-RVH 34
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.9 bits (61), Expect = 0.79
Identities = 17/117 (14%), Positives = 33/117 (28%), Gaps = 39/117 (33%)
Query: 33 FLPSSVDDLLLHSRKCASAHRPDK---SYNYVCCICDYKSYKKSHMRDHIQSHLG----- 84
+PS +L + + HR YN D ++ + SH+G
Sbjct: 427 SIPSIYLELKVKLENEYALHR--SIVDHYNIPKTF-DSDDLIPPYLDQYFYSHIGHHLKN 483
Query: 85 ----DKPFVCEHCFSNF------------------------ARLRRLKEHILRMHPE 113
++ + F +F +L+ K +I P+
Sbjct: 484 IEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPK 540
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 25.7 bits (57), Expect = 0.85
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 81 SHLGDKPFVCEHCFSNFARLRRLKEHILRMH 111
G+KP+ C C F+ RL +H +MH
Sbjct: 4 GSSGEKPYSCAECKETFSDNNRLVQHQ-KMH 33
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.0 bits (58), Expect = 0.90
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 60 YVCCICDYKSYKKSHMRDHIQSHLGDKPFVCEH 92
Y C C KKS + H + H G+ P
Sbjct: 13 YECSDCGKSFIKKSQLHVHQRIHTGENPSGPSS 45
Score = 23.7 bits (52), Expect = 5.4
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 78 HIQSHLGDKPFVCEHCFSNFARLRRLKEH 106
S G+KP+ C C +F + +L H
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVH 31
>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia
fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A
1oc9_B 1fg4_A 1oc9_A
Length = 144
Score = 27.4 bits (61), Expect = 0.91
Identities = 10/20 (50%), Positives = 10/20 (50%)
Query: 16 KIVFFYSSGVWCHHCEQFLP 35
K VFFY S WC F P
Sbjct: 29 KTVFFYFSASWCPPSRAFTP 48
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 26.6 bits (60), Expect = 0.92
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 72 KSHMRDHIQSHLGDKPFVCEHCFSNFARLRRLKEHILRMH 111
KS M+ H H G+KP C+ C F++ L H R H
Sbjct: 42 KSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITH-SRKH 80
Score = 25.8 bits (58), Expect = 1.4
Identities = 10/40 (25%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 72 KSHMRDHIQSHLGDKPFVCEHCFSNFARLRRLKEHILRMH 111
S + H+ H +P+ C++C F + +K+H +H
Sbjct: 14 SSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHT-FIH 52
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 25.6 bits (57), Expect = 0.97
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 78 HIQSHLGDKPFVCEHCFSNFARLRRLKEHILRMH 111
S G++P+ C C NF R L EH L+ H
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEH-LKRH 35
Score = 23.2 bits (51), Expect = 6.9
Identities = 5/19 (26%), Positives = 10/19 (52%)
Query: 72 KSHMRDHIQSHLGDKPFVC 90
SH+ +H++ H +K
Sbjct: 25 HSHLIEHLKRHFREKSSGP 43
>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius
rotundicauda}
Length = 143
Score = 27.0 bits (60), Expect = 0.98
Identities = 10/24 (41%), Positives = 11/24 (45%)
Query: 16 KIVFFYSSGVWCHHCEQFLPSSVD 39
I+ FY S WC C F P D
Sbjct: 27 DIIGFYFSAHWCPPCRGFTPILAD 50
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat,
lysine dimethylation, protein binding; HET: MLY; 1.80A
{Escherichia coli} PDB: 3qdn_A*
Length = 287
Score = 27.5 bits (61), Expect = 1.00
Identities = 6/19 (31%), Positives = 9/19 (47%), Gaps = 2/19 (10%)
Query: 17 IVFFYSSGVWCHHCEQFLP 35
+ +F+S HC Q P
Sbjct: 30 LFYFWSE--RSQHCLQLTP 46
>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 43
Score = 25.6 bits (55), Expect = 1.0
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 81 SHLGDKPFVCEHCFSNFARLRRLKEHILRMHPE 113
G+ F C C F+ LK H L+ H +
Sbjct: 4 GSSGNGAFFCNECDCRFSEEASLKRHTLQTHSD 36
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 26.3 bits (59), Expect = 1.1
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 72 KSHMRDHIQSHLGDKPFVCEHCFSNFARLRRLKEHILRMH 111
S + H + H G+KP+ C C F++ L H R+H
Sbjct: 27 SSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH-QRIH 65
Score = 23.6 bits (52), Expect = 9.0
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 82 HLGDKPFVCEHCFSNFARLRRLKEHILRMH 111
H G+KP+ C C F+R L +H R+H
Sbjct: 9 HSGEKPYGCVECGKAFSRSSILVQH-QRVH 37
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 25.6 bits (57), Expect = 1.1
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 78 HIQSHLGDKPFVCEHCFSNFARLRRLKEH 106
S +G+K + C C F++ L+ H
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLH 31
Score = 24.4 bits (54), Expect = 2.5
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 60 YVCCICDYKSY-KKSHMRDHIQSHLGDKPFVC 90
+ C CD + + S +R H H+G+KP
Sbjct: 13 WKCRECD-MCFSQASSLRLHQNVHVGEKPSGP 43
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 25.2 bits (54), Expect = 1.2
Identities = 8/27 (29%), Positives = 17/27 (62%)
Query: 60 YVCCICDYKSYKKSHMRDHIQSHLGDK 86
+ C +C+Y + KS+++ H+ H +K
Sbjct: 10 FKCSLCEYATRSKSNLKAHMNRHSTEK 36
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 25.6 bits (57), Expect = 1.2
Identities = 7/29 (24%), Positives = 8/29 (27%)
Query: 78 HIQSHLGDKPFVCEHCFSNFARLRRLKEH 106
S K C C F L +H
Sbjct: 3 SGSSGSSTKSHQCHECGRGFTLKSHLNQH 31
>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase,
carbamoyl phosphate, transferas catalytic cycle; 2.10A
{Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A
Length = 304
Score = 27.1 bits (61), Expect = 1.2
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 96 NFARLRRLKEHILRMHP 112
R R+K H + MHP
Sbjct: 233 TVERAERMKRHAIIMHP 249
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 25.5 bits (57), Expect = 1.2
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 78 HIQSHLGDKPFVCEHCFSNFARLRRLKEH 106
S +KP+ CE C + R L H
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMH 31
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 45
Score = 25.6 bits (57), Expect = 1.2
Identities = 11/29 (37%), Positives = 12/29 (41%)
Query: 78 HIQSHLGDKPFVCEHCFSNFARLRRLKEH 106
S G KPF C HC +F L H
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTH 31
>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone,
endoplasmic reticulum, S response; 2.60A {Homo sapiens}
Length = 382
Score = 27.3 bits (60), Expect = 1.3
Identities = 6/18 (33%), Positives = 8/18 (44%), Gaps = 2/18 (11%)
Query: 18 VFFYSSGVWCHHCEQFLP 35
V FY+ WC + P
Sbjct: 27 VNFYAD--WCRFSQMLHP 42
>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin
fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A
{Trypanosoma brucei} PDB: 3qd9_A*
Length = 470
Score = 27.3 bits (59), Expect = 1.3
Identities = 6/21 (28%), Positives = 9/21 (42%), Gaps = 2/21 (9%)
Query: 15 SKIVFFYSSGVWCHHCEQFLP 35
IV FY+ C C ++
Sbjct: 44 PWIVLFYND--GCGACRRYAS 62
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.5 bits (57), Expect = 1.3
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 60 YVCCICDYKSYKKSHMRDHIQSHLGDKPFVC 90
Y C C +KS + H QSH G++
Sbjct: 13 YKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 24.4 bits (54), Expect = 2.6
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 78 HIQSHLGDKPFVCEHCFSNFARLRRLKEH 106
S G+KP+ C C F R L H
Sbjct: 3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIH 31
>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum,
glycoprotein, immunoglobulin domain, microsome, protein
disulfide isomerase, thioredoxin-like FO like domain;
HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A
Length = 481
Score = 27.1 bits (59), Expect = 1.3
Identities = 6/19 (31%), Positives = 11/19 (57%), Gaps = 2/19 (10%)
Query: 17 IVFFYSSGVWCHHCEQFLP 35
+V F++ WC H ++ P
Sbjct: 25 LVEFFAP--WCGHAKRLAP 41
Score = 26.7 bits (58), Expect = 1.8
Identities = 7/19 (36%), Positives = 11/19 (57%), Gaps = 2/19 (10%)
Query: 17 IVFFYSSGVWCHHCEQFLP 35
++ FY+ WC HC+ P
Sbjct: 374 LIEFYAP--WCGHCKNLEP 390
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 25.2 bits (56), Expect = 1.4
Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 78 HIQSHLGDKPFVCEHCFSNFARLRRLKEHILRMH 111
S G++PF C C F R L H LR+H
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGH-LRLH 35
Score = 23.6 bits (52), Expect = 5.9
Identities = 7/31 (22%), Positives = 14/31 (45%)
Query: 60 YVCCICDYKSYKKSHMRDHIQSHLGDKPFVC 90
+ C C ++SH+ H++ H +K
Sbjct: 13 FKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19,
structural genomics, PSI, protein structure initiative;
1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A
Length = 164
Score = 26.9 bits (59), Expect = 1.5
Identities = 6/24 (25%), Positives = 10/24 (41%), Gaps = 2/24 (8%)
Query: 17 IVFFYSSGVWCHHCEQFLPSSVDD 40
+V + S WC C+ P +
Sbjct: 50 MVIIHKS--WCGACKALKPKFAES 71
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 25.2 bits (56), Expect = 1.5
Identities = 10/32 (31%), Positives = 13/32 (40%)
Query: 60 YVCCICDYKSYKKSHMRDHIQSHLGDKPFVCE 91
+ C C Y S H +SH G+KP
Sbjct: 13 FKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS 44
Score = 24.8 bits (55), Expect = 2.1
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 78 HIQSHLGDKPFVCEHCFSNFARLRRLKEH 106
S G+KPF CE C F + H
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSH 31
>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin;
2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10
Length = 144
Score = 26.5 bits (59), Expect = 1.5
Identities = 10/24 (41%), Positives = 11/24 (45%)
Query: 16 KIVFFYSSGVWCHHCEQFLPSSVD 39
K VF Y S WC C F P +
Sbjct: 29 KTVFLYFSASWCPPCRGFTPVLAE 52
>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron
transport; 1.80A {Leishmania major}
Length = 165
Score = 26.7 bits (59), Expect = 1.5
Identities = 11/20 (55%), Positives = 11/20 (55%)
Query: 16 KIVFFYSSGVWCHHCEQFLP 35
K VFFY S WC C F P
Sbjct: 49 KTVFFYFSASWCPPCRGFTP 68
>1zma_A Bacterocin transport accessory protein;
alpha-beta-alpha-sandwich, structural genomics, PSI,
protein structure initiative; HET: MSE; 1.25A
{Streptococcus pneumoniae} SCOP: c.47.1.1
Length = 118
Score = 26.5 bits (58), Expect = 1.5
Identities = 4/19 (21%), Positives = 6/19 (31%), Gaps = 2/19 (10%)
Query: 17 IVFFYSSGVWCHHCEQFLP 35
F C +C +F
Sbjct: 33 TFFIGRK--TCPYCRKFAG 49
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Length = 42
Score = 24.9 bits (55), Expect = 1.5
Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 78 HIQSHLGDKPFVCEHCFSNFARLRRLKEHILRMH 111
S G+ P++C C +F + L H R
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVH-QRSC 34
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.2 bits (56), Expect = 1.5
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 60 YVCCICDYKSYKKSHMRDHIQSHLGDKPFVCE 91
Y C C KS++ H+++H G+KP
Sbjct: 13 YGCSECGKAFSSKSYLIIHMRTHSGEKPSGPS 44
Score = 24.0 bits (53), Expect = 3.9
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 78 HIQSHLGDKPFVCEHCFSNFARLRRLKEHILRMH 111
S G+KP+ C C F+ L H+ R H
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHM-RTH 35
>3q4u_A Activin receptor type-1; structural genomics consortium, SGC,
protein kinase, transfe; HET: LDN FLC; 1.82A {Homo
sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*
Length = 301
Score = 26.9 bits (60), Expect = 1.6
Identities = 14/36 (38%), Positives = 14/36 (38%), Gaps = 12/36 (33%)
Query: 43 LHSR------KCASAHRPDKSYN------YVCCICD 66
LH K A AHR KS N CCI D
Sbjct: 121 LHIEIFGTQGKPAIAHRDLKSKNILVKKNGQCCIAD 156
>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC,
endoplasmic reticulum, glycoprotein, redox-active
center; 2.00A {Saccharomyces cerevisiae}
Length = 298
Score = 27.0 bits (59), Expect = 1.6
Identities = 7/19 (36%), Positives = 11/19 (57%), Gaps = 2/19 (10%)
Query: 17 IVFFYSSGVWCHHCEQFLP 35
+V FY+ WC HC++
Sbjct: 39 LVEFYAP--WCGHCKKLSS 55
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 25.2 bits (56), Expect = 1.6
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 60 YVCCICDYKSYKKSHMRDHIQSHLGDKPFVC 90
+ C C+ KS++ H Q+H +KP
Sbjct: 11 FGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae}
SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A
Length = 504
Score = 26.7 bits (58), Expect = 1.7
Identities = 6/19 (31%), Positives = 10/19 (52%), Gaps = 2/19 (10%)
Query: 17 IVFFYSSGVWCHHCEQFLP 35
+ F++ WC HC+ P
Sbjct: 35 LAEFFAP--WCGHCKNMAP 51
Score = 26.7 bits (58), Expect = 1.8
Identities = 7/19 (36%), Positives = 12/19 (63%), Gaps = 2/19 (10%)
Query: 17 IVFFYSSGVWCHHCEQFLP 35
+V +Y+ WC HC++ P
Sbjct: 380 LVLYYAP--WCGHCKRLAP 396
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 1.8
Identities = 9/29 (31%), Positives = 11/29 (37%)
Query: 78 HIQSHLGDKPFVCEHCFSNFARLRRLKEH 106
S G+KP C C F +L H
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMH 31
Score = 24.8 bits (55), Expect = 2.1
Identities = 8/31 (25%), Positives = 12/31 (38%)
Query: 60 YVCCICDYKSYKKSHMRDHIQSHLGDKPFVC 90
C C KS + H ++H+ DK
Sbjct: 13 CKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 1.9
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 78 HIQSHLGDKPFVCEHCFSNFARLRRLKEHILRMH 111
S G KP+ C+ C F ++ L +H R+H
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQH-KRVH 35
Score = 23.3 bits (51), Expect = 8.9
Identities = 4/20 (20%), Positives = 8/20 (40%)
Query: 72 KSHMRDHIQSHLGDKPFVCE 91
H+ H + H G++
Sbjct: 25 IGHLNQHKRVHTGERSSGPS 44
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 1.9
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 78 HIQSHLGDKPFVCEHCFSNFARLRRLKEH 106
S G+KP++C C +F + L H
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRH 31
Score = 24.0 bits (53), Expect = 4.2
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 60 YVCCICDYKSYKKSHMRDHIQSHLGDKPFVCE 91
Y+C C +KSH+ H + H G+KP
Sbjct: 13 YICNECGKSFIQKSHLNRHRRIHTGEKPSGPS 44
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 1.9
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 78 HIQSHLGDKPFVCEHCFSNFARLRRLKEH 106
S G+KP+ C C F R L EH
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEH 31
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 2.1
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 78 HIQSHLGDKPFVCEHCFSNFARLRRLKEH 106
S G+K + C+ C +F+R L +H
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKH 31
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 2.1
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 78 HIQSHLGDKPFVCEHCFSNFARLRRLKEH 106
S G+KP+VC++C F L H
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRH 31
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 2.1
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 77 DHIQSHLGDKPFVCEHCFSNFARLRRLKEH 106
S G+KP+ C C + R L H
Sbjct: 2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFH 31
>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding,
endonuclease, HEL hydrolase, nucleotide-binding,
phosphoprotein, RN binding; HET: MSE; 1.68A {Mus
musculus} PDB: 3c4t_A 2eb1_A
Length = 265
Score = 26.3 bits (58), Expect = 2.1
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 89 VCEHCFSNFARLRRLKEHILRMHPEL 114
V F++ A ++ + PEL
Sbjct: 89 VNNTIFASLAVKYDYHKYFKAVSPEL 114
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 24.8 bits (55), Expect = 2.2
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 78 HIQSHLGDKPFVCEHCFSNFARLRRLKEHILRMH 111
S G+K + C C F+R +L +H ++H
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQH-QKIH 35
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 30
Score = 24.4 bits (53), Expect = 2.3
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 86 KPFVCEHCFSNFARLRRLKEHILRMH 111
K + C C F R L H ++H
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQKIH 26
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 24.9 bits (55), Expect = 2.3
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 78 HIQSHLGDKPFVCEHCFSNFARLRRLKEH 106
S G+K C+ C NF + L+ H
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIH 31
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 2.3
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 60 YVCCICDYKSYKKSHMRDHIQSHLGDKPFVC 90
Y C C KS +R H + H G++
Sbjct: 13 YKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 24.4 bits (54), Expect = 3.4
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 78 HIQSHLGDKPFVCEHCFSNFARLRRLKEH 106
S G+KP+ C C +F RL+ H
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIH 31
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 2.4
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 60 YVCCICDYKSYKKSHMRDHIQSHLGDKPFVCE 91
Y C +C +K+H+ H ++H G+KP
Sbjct: 13 YECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
Score = 23.6 bits (52), Expect = 5.0
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 78 HIQSHLGDKPFVCEHCFSNFARLRRLKEH 106
S G+KP+ C+ C F + L +H
Sbjct: 3 SGSSGTGEKPYECKVCSKAFTQKAHLAQH 31
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 2.4
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 78 HIQSHLGDKPFVCEHCFSNFARLRRLKEH 106
S G+KP++C C F L +H
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKH 31
Score = 23.6 bits (52), Expect = 5.7
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 60 YVCCICDYKSYKKSHMRDHIQSHLGDKPFVCEH 92
Y+C C +S++ H + H KP
Sbjct: 13 YICAECGKAFTIRSNLIKHQKIHTKQKPSGPSS 45
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 24.8 bits (55), Expect = 2.4
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 77 DHIQSHLGDKPFVCEHCFSNFARLRRLKEH 106
S G+KP+ CE C F R L H
Sbjct: 2 SSGSSGTGEKPYKCEECGKGFICRRDLYTH 31
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 2.5
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 60 YVCCICDYKSYKKSHMRDHIQSHLGDKPFVCEH 92
Y C C +S++ H + H G+KP
Sbjct: 13 YRCAECGKAFTDRSNLFTHQKIHTGEKPSGPSS 45
Score = 23.6 bits (52), Expect = 4.8
Identities = 9/30 (30%), Positives = 11/30 (36%)
Query: 77 DHIQSHLGDKPFVCEHCFSNFARLRRLKEH 106
S G+KP+ C C F L H
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTH 31
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 2.5
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 78 HIQSHLGDKPFVCEHCFSNFARLRRLKEH 106
S G+KPF C+ C +F RL H
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRH 31
Score = 24.0 bits (53), Expect = 4.3
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 60 YVCCICDYKSY-KKSHMRDHIQSHLGDKPFVCE 91
+ C IC KS+ +S + H H +KP
Sbjct: 13 FKCDICG-KSFCGRSRLNRHSMVHTAEKPSGPS 44
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 2.5
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 60 YVCCICDYKSYKKSHMRDHIQSHLGDKPFVCE 91
Y C C +KS + H ++H G+KP
Sbjct: 13 YGCNECGKTFSQKSILSAHQRTHTGEKPSGPS 44
Score = 24.0 bits (53), Expect = 4.3
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 78 HIQSHLGDKPFVCEHCFSNFARLRRLKEH 106
S G+KP+ C C F++ L H
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAH 31
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 24.4 bits (54), Expect = 2.6
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 60 YVCCICDYKSYKKSHMRDHIQSHLGDKPFVC 90
YVC C KS++ H ++H G+
Sbjct: 13 YVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 24.0 bits (53), Expect = 3.5
Identities = 12/34 (35%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 78 HIQSHLGDKPFVCEHCFSNFARLRRLKEHILRMH 111
S G KP+VC C F L H R H
Sbjct: 3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHT-RTH 35
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 2.6
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 78 HIQSHLGDKPFVCEHCFSNFARLRRLKEHILRMH 111
S G+KP+ C C F L +H LR+H
Sbjct: 3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQH-LRVH 35
Score = 23.6 bits (52), Expect = 6.1
Identities = 6/33 (18%), Positives = 12/33 (36%)
Query: 60 YVCCICDYKSYKKSHMRDHIQSHLGDKPFVCEH 92
Y C +C +H+ H++ H +
Sbjct: 13 YSCNVCGKAFVLSAHLNQHLRVHTQETLSGPSS 45
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 24.4 bits (54), Expect = 2.8
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 77 DHIQSHLGDKPFVCEHCFSNFARLRRLKEH 106
S G+KPF C C F+R L H
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVH 31
Score = 23.6 bits (52), Expect = 5.3
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 60 YVCCICDYKSYKKSHMRDHIQSHLGDKPFVCEH 92
+ C C ++S + H + H G+KP
Sbjct: 13 FKCVECGKGFSRRSALNVHHKLHTGEKPSGPSS 45
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 2.8
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 77 DHIQSHLGDKPFVCEHCFSNFARLRRLKEHILRMH 111
S G+KPF CE C F + L H R+H
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSH-QRVH 35
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 24.5 bits (54), Expect = 2.9
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 78 HIQSHLGDKPFVCEHCFSNFARLRRLKEH 106
S G+KP+ C+ C +F L +H
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKH 31
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 2.9
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 78 HIQSHLGDKPFVCEHCFSNFARLRRLKEH 106
S G+KP+ CE C F +L+EH
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEH 31
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 3.0
Identities = 9/29 (31%), Positives = 11/29 (37%)
Query: 78 HIQSHLGDKPFVCEHCFSNFARLRRLKEH 106
S G+KP+ C C F L H
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTH 31
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 25.1 bits (56), Expect = 3.0
Identities = 7/41 (17%), Positives = 13/41 (31%), Gaps = 1/41 (2%)
Query: 71 KKSHMRDHIQSHLGDKPFVCEHCFSNFARLRRLKEHILRMH 111
+ + C+ C +F+ L +H R H
Sbjct: 2 SSGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKH-RRTH 41
Score = 24.7 bits (55), Expect = 3.4
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 72 KSHMRDHIQSHLGDKPFVCEHCFSNFARLRRLKEH 106
S + H ++H G+KP+ C+ C F + L H
Sbjct: 31 SSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGH 65
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 3.0
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 60 YVCCICDYKSYKKSHMRDHIQSHLGDKPFVCEH 92
+ C C +KS + H + H G+KP
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKPSGPSS 45
Score = 24.4 bits (54), Expect = 3.2
Identities = 10/29 (34%), Positives = 10/29 (34%)
Query: 78 HIQSHLGDKPFVCEHCFSNFARLRRLKEH 106
S G K F C C F R L H
Sbjct: 3 SGSSGTGGKHFECTECGKAFTRKSTLSMH 31
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 24.4 bits (54), Expect = 3.1
Identities = 11/31 (35%), Positives = 13/31 (41%)
Query: 60 YVCCICDYKSYKKSHMRDHIQSHLGDKPFVC 90
Y C C KS + H +SH G KP
Sbjct: 13 YGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 23.6 bits (52), Expect = 5.0
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 78 HIQSHLGDKPFVCEHCFSNFARLRRLKEH 106
S G KP+ C C F+ +L H
Sbjct: 3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVH 31
>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines
missing, unknown funct; 1.50A {Trypanosoma cruzi}
Length = 127
Score = 25.4 bits (56), Expect = 3.2
Identities = 6/23 (26%), Positives = 8/23 (34%), Gaps = 4/23 (17%)
Query: 15 SKIVF--FYSSGVWCHHCEQFLP 35
K VF +Y W H +
Sbjct: 33 EKDVFVLYYVP--WSRHSVAAMR 53
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 3.3
Identities = 9/29 (31%), Positives = 11/29 (37%)
Query: 78 HIQSHLGDKPFVCEHCFSNFARLRRLKEH 106
S G+ PF+C C F L H
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIH 31
Score = 22.8 bits (50), Expect = 9.8
Identities = 7/31 (22%), Positives = 15/31 (48%)
Query: 60 YVCCICDYKSYKKSHMRDHIQSHLGDKPFVC 90
++C C K+++ H + H G++P
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 3.3
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 78 HIQSHLGDKPFVCEHCFSNFARLRRLKEHILRMH 111
S G+KPF C+ C F + L H LR+H
Sbjct: 3 SGSSGSGEKPFKCKECGKAFRQNIHLASH-LRIH 35
>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing
protein 7, endoplasmic reticulum, redox-active center,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 130
Score = 25.4 bits (56), Expect = 3.3
Identities = 8/19 (42%), Positives = 12/19 (63%), Gaps = 2/19 (10%)
Query: 17 IVFFYSSGVWCHHCEQFLP 35
+V FY+ WC HC++ P
Sbjct: 39 LVEFYAP--WCGHCQRLTP 55
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 3.4
Identities = 8/33 (24%), Positives = 12/33 (36%)
Query: 60 YVCCICDYKSYKKSHMRDHIQSHLGDKPFVCEH 92
Y C +C + + H + H G KP
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSS 45
Score = 23.2 bits (51), Expect = 8.4
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 78 HIQSHLGDKPFVCEHCFSNFARLRRLKEH 106
S G+KP+ C C F+ + L H
Sbjct: 3 SGSSGTGEKPYECSVCGKAFSHRQSLSVH 31
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.0 bits (53), Expect = 3.5
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 78 HIQSHLGDKPFVCEHCFSNFARLRRLKEH 106
S G+KP+ C C +F+ RL +H
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQH 31
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 24.0 bits (53), Expect = 3.5
Identities = 6/29 (20%), Positives = 10/29 (34%)
Query: 78 HIQSHLGDKPFVCEHCFSNFARLRRLKEH 106
S G++ C C F + +H
Sbjct: 3 SGSSGHGERGHRCSDCGKFFLQASNFIQH 31
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.0 bits (53), Expect = 3.5
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 60 YVCCICDYKSYKKSHMRDHIQSHLGDKPFVCEH 92
Y C C +KS + H + H G+KP
Sbjct: 13 YECSECGKAFIQKSTLSMHQRIHRGEKPSGPSS 45
Score = 23.3 bits (51), Expect = 7.3
Identities = 7/29 (24%), Positives = 11/29 (37%)
Query: 78 HIQSHLGDKPFVCEHCFSNFARLRRLKEH 106
S G++ + C C F + L H
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMH 31
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.0 bits (53), Expect = 3.5
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 78 HIQSHLGDKPFVCEHCFSNFARLRRLKEH 106
S G++ + C C FAR L H
Sbjct: 3 SGSSGTGERHYECSECGKAFARKSTLIMH 31
Score = 24.0 bits (53), Expect = 4.2
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 60 YVCCICDYKSYKKSHMRDHIQSHLGDKPFVCEH 92
Y C C +KS + H + H G+KP
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEKPSGPSS 45
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 24.0 bits (53), Expect = 3.5
Identities = 8/33 (24%), Positives = 12/33 (36%)
Query: 60 YVCCICDYKSYKKSHMRDHIQSHLGDKPFVCEH 92
+ C C S + H + H G+KP
Sbjct: 13 FECAECGKSFSISSQLATHQRIHTGEKPSGPSS 45
Score = 24.0 bits (53), Expect = 4.1
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 78 HIQSHLGDKPFVCEHCFSNFARLRRLKEH 106
S G+KPF C C +F+ +L H
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATH 31
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 44
Score = 24.0 bits (53), Expect = 3.9
Identities = 9/29 (31%), Positives = 11/29 (37%)
Query: 78 HIQSHLGDKPFVCEHCFSNFARLRRLKEH 106
S G+KP+ C C F L H
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWKSLLIVH 31
>3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel,
pyridoxal 5-phosphate synthase, PLP G3 SNO1,
biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces
cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A
Length = 291
Score = 25.9 bits (56), Expect = 3.9
Identities = 10/30 (33%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 76 RDHIQSHLGDKPFVCEHCFSNFARLRRLKE 105
HI+ PFVC LRR+ E
Sbjct: 106 THHIEKDKFKVPFVCG-AKDLGEALRRINE 134
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.0 bits (53), Expect = 3.9
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 77 DHIQSHLGDKPFVCEHCFSNFARLRRLKEH 106
S G+KPF CE C F + +L H
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSH 31
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.0 bits (53), Expect = 4.0
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 60 YVCCICDYKSYKKSHMRDHIQSHLGDKPFVCE 91
+ C C KS++ H ++H G+KP
Sbjct: 13 FECSECQKAFNTKSNLIVHQRTHTGEKPSGPS 44
Score = 23.6 bits (52), Expect = 4.9
Identities = 10/29 (34%), Positives = 11/29 (37%)
Query: 78 HIQSHLGDKPFVCEHCFSNFARLRRLKEH 106
S G+KPF C C F L H
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNLIVH 31
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.0 bits (53), Expect = 4.1
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 78 HIQSHLGDKPFVCEHCFSNFARLRRLKEH 106
S +G+K + C+ C F++ L+ H
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTH 31
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 24.0 bits (53), Expect = 4.1
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 78 HIQSHLGDKPFVCEHCFSNFARLRRLKEH 106
S G+ P+ C C F+R +L H
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSH 31
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.0 bits (53), Expect = 4.1
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 60 YVCCICDYKSYKKSHMRDHIQSHLGDKPFVCEH 92
Y C C + SH+ H H G+KP
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEKPSGPSS 45
Score = 23.2 bits (51), Expect = 8.7
Identities = 10/34 (29%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 78 HIQSHLGDKPFVCEHCFSNFARLRRLKEHILRMH 111
S G KP+ C C F + L H +H
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARH-RGIH 35
>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 126
Score = 25.0 bits (55), Expect = 4.4
Identities = 8/29 (27%), Positives = 11/29 (37%), Gaps = 4/29 (13%)
Query: 9 NFRICYSKIVF--FYSSGVWCHHCEQFLP 35
N+R FY+ WC C+ P
Sbjct: 16 NWRELLEGDWMIEFYAP--WCPACQNLQP 42
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 24.0 bits (53), Expect = 4.4
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 78 HIQSHLGDKPFVCEHCFSNFARLRRLKEH 106
S G+KPF C C F+ L +H
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQH 31
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.1 bits (53), Expect = 4.4
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 78 HIQSHLGDKPFVCEHCFSNFARLRRLKEH 106
S G+KP+ C C F +H
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQH 31
Score = 23.3 bits (51), Expect = 8.6
Identities = 8/33 (24%), Positives = 10/33 (30%)
Query: 60 YVCCICDYKSYKKSHMRDHIQSHLGDKPFVCEH 92
Y C C S H + H G +P
Sbjct: 13 YKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSS 45
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.0 bits (53), Expect = 4.6
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 60 YVCCICDYKSYKKSHMRDHIQSHLGDKPFVCEH 92
Y C C +K + H ++H G+KP
Sbjct: 13 YECHECGKAFSRKYQLISHQRTHAGEKPSGPSS 45
Score = 23.6 bits (52), Expect = 5.4
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 78 HIQSHLGDKPFVCEHCFSNFARLRRLKEH 106
S G+ P+ C C F+R +L H
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISH 31
>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga
hutchinsoni structural genomics, PSI-2, protein
structure initiative; 1.88A {Cytophaga hutchinsonii}
Length = 148
Score = 25.4 bits (56), Expect = 4.7
Identities = 9/19 (47%), Positives = 12/19 (63%), Gaps = 2/19 (10%)
Query: 17 IVFFYSSGVWCHHCEQFLP 35
I+FF+ S C HC+Q P
Sbjct: 35 ILFFWDS--QCGHCQQETP 51
>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform;
glycoprotein, calcium-binding, muscle protein, metal
binding protein; 2.40A {Canis lupus familiaris} PDB:
2vaf_A
Length = 350
Score = 25.4 bits (55), Expect = 4.9
Identities = 1/18 (5%), Positives = 3/18 (16%), Gaps = 2/18 (11%)
Query: 18 VFFYSSGVWCHHCEQFLP 35
+Y +
Sbjct: 32 CLYYHE--SVSSDKVAQK 47
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.6 bits (52), Expect = 5.0
Identities = 9/29 (31%), Positives = 11/29 (37%)
Query: 78 HIQSHLGDKPFVCEHCFSNFARLRRLKEH 106
S G+KP+ C C F L H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRH 31
>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus
cuniculus} PDB: 1a8y_A 3trq_A* 3trp_A* 3uom_A
Length = 367
Score = 25.4 bits (55), Expect = 5.2
Identities = 0/14 (0%), Positives = 3/14 (21%), Gaps = 2/14 (14%)
Query: 17 IVFFYSSGVWCHHC 30
+ ++
Sbjct: 34 ALLYHEP--PEDDK 45
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.6 bits (52), Expect = 5.4
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 78 HIQSHLGDKPFVCEHCFSNFARLRRLKEH 106
S G+KP+ C C F R L H
Sbjct: 3 SGSSGTGEKPYKCHECGKVFRRNSHLARH 31
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.6 bits (52), Expect = 5.4
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 72 KSHMRDHIQSHLGDKPFVCEH 92
SH+ H + H G KP
Sbjct: 25 NSHLARHRRVHTGGKPSGPSS 45
Score = 23.2 bits (51), Expect = 7.9
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 78 HIQSHLGDKPFVCEHCFSNFARLRRLKEHILRMH 111
S G+KP+ C C F + L H R+H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARH-RRVH 35
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.6 bits (52), Expect = 5.5
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 60 YVCCICDYKSYKKSHMRDHIQSHLGDKPFVCEH 92
Y C C + SH+ H H G+KP
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEKPSGPSS 45
Score = 23.2 bits (51), Expect = 7.0
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 78 HIQSHLGDKPFVCEHCFSNFARLRRLKEH 106
S G+KP+ C C F + L H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARH 31
>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura
genomics, PSI, protein structure initiative; 1.50A
{Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A
Length = 167
Score = 25.0 bits (54), Expect = 5.6
Identities = 4/20 (20%), Positives = 8/20 (40%)
Query: 16 KIVFFYSSGVWCHHCEQFLP 35
+ + +WC C+ L
Sbjct: 55 RYRLLVAGEMWCPDCQINLA 74
>3mdy_A Bone morphogenetic protein receptor type-1B; complex
(isomerase-protein kinase), receptor serine/threonin
structural genomics consortium, SGC; HET: LDN; 2.05A
{Homo sapiens}
Length = 337
Score = 25.5 bits (56), Expect = 5.6
Identities = 14/36 (38%), Positives = 15/36 (41%), Gaps = 12/36 (33%)
Query: 43 LHSR------KCASAHRPDKSYN------YVCCICD 66
LH+ K A AHR KS N CCI D
Sbjct: 150 LHTEIFSTQGKPAIAHRDLKSKNILVKKNGTCCIAD 185
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 37
Score = 23.7 bits (50), Expect = 5.6
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 86 KPFVCEHCFSNFARLRRLKEHILRMHPEL 114
+ + C C +F+ R +K HI HPE+
Sbjct: 8 RSYSCPVCEKSFSEDRLIKSHIKTNHPEV 36
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation,
transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus}
PDB: 1tbn_A 1tbo_A 2e73_A
Length = 674
Score = 25.4 bits (55), Expect = 5.7
Identities = 16/85 (18%), Positives = 26/85 (30%), Gaps = 14/85 (16%)
Query: 17 IVFFYSSGVWCHHCEQFLPSSVDDLLLHSRKCAS----AHRPDKSYNYVCCIC---DYKS 69
F+ +C HC F+ +C H+ + + +V C D
Sbjct: 41 TARFFKQPTFCSHCTDFIWG----FGKQGFQCQVCSFVVHK--RCHEFVTFSCPGADKGP 94
Query: 70 YKKSHMRDH-IQSHLGDKPFVCEHC 93
H + H P C+HC
Sbjct: 95 ASDDPRSKHKFKIHTYSSPTFCDHC 119
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC,
gtpas activation, metal-binding, phorbol-ester binding,
SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Length = 463
Score = 25.2 bits (55), Expect = 5.9
Identities = 14/73 (19%), Positives = 27/73 (36%), Gaps = 3/73 (4%)
Query: 26 WCHHCEQFLPSSVDDLLLHSRKCASAHRPDKSYNYVCCICDYKSYKK---SHMRDHIQSH 82
WC +C F+ + + + + H+ C D K KK + +++H
Sbjct: 222 WCEYCANFMWGLIAQGVKCADCGLNVHKQCSKMVPNDCKPDLKHVKKVYSCDLTTLVKAH 281
Query: 83 LGDKPFVCEHCFS 95
+P V + C
Sbjct: 282 TTKRPMVVDMCIR 294
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 23.6 bits (52), Expect = 5.9
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 78 HIQSHLGDKPFVCEHCFSNFARLRRLKEH 106
S G+KP+ C+ C F++ L +H
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQH 31
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC),
C2H2, APO metal-binding, nucleus, phosphoprotein,
transcription, TRAN regulation; 1.80A {Homo sapiens}
Length = 48
Score = 23.6 bits (50), Expect = 6.0
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 85 DKPFVCEHCFSNFARLRRLKEHILRMHPE 113
DKP+ C+ C + L H H
Sbjct: 5 DKPYACDICGKRYKNRPGLSYHYAHSHLA 33
>3gxj_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline,
aortic aneurysm, ATP-binding, craniosynostosis, disease
mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens}
PDB: 1vjy_A* 3gxl_A* 3hmm_A* 2wot_A* 2wou_A* 1py5_A*
1rw8_A*
Length = 303
Score = 25.0 bits (55), Expect = 6.0
Identities = 14/36 (38%), Positives = 14/36 (38%), Gaps = 12/36 (33%)
Query: 43 LHSR------KCASAHRPDKSYN------YVCCICD 66
LH K A AHR KS N CCI D
Sbjct: 116 LHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIAD 151
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 23.6 bits (52), Expect = 6.0
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 78 HIQSHLGDKPFVCEHCFSNFARLRRLKEHILRMH 111
S G+KP+ C+ C F L +H +H
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQH-HSVH 35
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 23.6 bits (52), Expect = 6.2
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 78 HIQSHLGDKPFVCEHCFSNFARLRRLKEH 106
S G+KP+ C C FA+ L +H
Sbjct: 3 SGSSGTGEKPYRCGECGKAFAQKANLTQH 31
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.6 bits (52), Expect = 6.4
Identities = 9/33 (27%), Positives = 11/33 (33%)
Query: 60 YVCCICDYKSYKKSHMRDHIQSHLGDKPFVCEH 92
Y C C +S + H H G KP
Sbjct: 13 YECNQCGKAFSVRSSLTTHQAIHTGKKPSGPSS 45
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.6 bits (52), Expect = 6.5
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 78 HIQSHLGDKPFVCEHCFSNFARLRRLKEHILRMH 111
S G+KP+ C C F + L H R+H
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNH-WRIH 35
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.6 bits (52), Expect = 6.5
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 78 HIQSHLGDKPFVCEHCFSNFARLRRLKEH 106
S G+KP+ CE C + L H
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMH 31
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 23.3 bits (51), Expect = 6.5
Identities = 10/34 (29%), Positives = 12/34 (35%)
Query: 78 HIQSHLGDKPFVCEHCFSNFARLRRLKEHILRMH 111
S G KP+ C C F + L H H
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYH 36
>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein
disulfide isomerase, endoplasmic R isomerase; 1.83A
{Homo sapiens}
Length = 151
Score = 24.6 bits (53), Expect = 6.9
Identities = 2/24 (8%), Positives = 7/24 (29%), Gaps = 2/24 (8%)
Query: 17 IVFFYSSGVWCHHCEQFLPSSVDD 40
+V + C + + +
Sbjct: 48 MVIHHLE--DCQYSQALKKVFAQN 69
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.2 bits (51), Expect = 7.0
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 78 HIQSHLGDKPFVCEHCFSNFARLRRLKEH 106
S G+KP+ C+ C F+ L +H
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQH 31
Score = 23.2 bits (51), Expect = 8.7
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 60 YVCCICDYKSYKKSHMRDHIQSHLGDKPFVCEH 92
Y C +C + + H + H G+KP
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVHSGEKPSGPSS 45
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 23.2 bits (51), Expect = 7.2
Identities = 9/29 (31%), Positives = 11/29 (37%)
Query: 78 HIQSHLGDKPFVCEHCFSNFARLRRLKEH 106
S G+KP+ C C F L H
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVH 31
Score = 23.2 bits (51), Expect = 7.4
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 60 YVCCICDYKSYKKSHMRDHIQSHLGDKPFVC 90
Y C C KS++ H ++H G+
Sbjct: 13 YECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 23.2 bits (51), Expect = 7.3
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 78 HIQSHLGDKPFVCEHCFSNFARLRRLKEH 106
S G++P C C +F + L +H
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQH 31
>3q8d_A DNA repair protein RECO; OB-fold, recombination initation, recom
initiation, SSB, RECR; HET: DNA CPS; 2.30A {Escherichia
coli}
Length = 242
Score = 24.8 bits (54), Expect = 7.4
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 75 MRDHIQSHLGDKPFVCEHCFSNFARLRRLKEH 106
R ++ +LG KP F F R +K H
Sbjct: 209 TRMALKPYLGGKPLKSRELFRQFMPKRTVKTH 240
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain,
endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Length = 210
Score = 24.8 bits (54), Expect = 7.4
Identities = 8/20 (40%), Positives = 9/20 (45%), Gaps = 2/20 (10%)
Query: 17 IVFFYSSGVWCHHCEQFLPS 36
V FYS C HC P+
Sbjct: 118 FVNFYSP--GCSHCHDLAPT 135
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 23.2 bits (51), Expect = 7.5
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 78 HIQSHLGDKPFVCEHCFSNFARLRRLKEH 106
S G+KPF C C ++ + L +H
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQH 31
>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul
structural genomics, PSI-2, protein structure
initiative; 1.30A {Xylella fastidiosa}
Length = 133
Score = 24.5 bits (53), Expect = 7.5
Identities = 5/25 (20%), Positives = 6/25 (24%)
Query: 16 KIVFFYSSGVWCHHCEQFLPSSVDD 40
K WC C S +
Sbjct: 30 KPTLLVFGANWCTDCRALDKSLRNQ 54
>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin
like domain, redox, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 133
Score = 24.7 bits (54), Expect = 7.7
Identities = 8/19 (42%), Positives = 11/19 (57%), Gaps = 2/19 (10%)
Query: 17 IVFFYSSGVWCHHCEQFLP 35
+V FY+ WC HC+ P
Sbjct: 29 MVEFYAP--WCGHCKNLEP 45
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.2 bits (51), Expect = 8.0
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 60 YVCCICDYKSYKKSHMRDHIQSHLGDKPFVCEH 92
Y+C +C +S++ H + H G+KP
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSS 45
>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold,
isomerase; 2.00A {Homo sapiens} PDB: 2diz_A
Length = 111
Score = 24.2 bits (53), Expect = 8.3
Identities = 7/19 (36%), Positives = 10/19 (52%), Gaps = 2/19 (10%)
Query: 17 IVFFYSSGVWCHHCEQFLP 35
+ FY+ WC HC+ P
Sbjct: 25 FIKFYAP--WCGHCKTLAP 41
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 23.2 bits (51), Expect = 8.5
Identities = 7/31 (22%), Positives = 12/31 (38%)
Query: 60 YVCCICDYKSYKKSHMRDHIQSHLGDKPFVC 90
Y C C +K + H ++H G+
Sbjct: 11 YECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 23.2 bits (51), Expect = 8.5
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 80 QSHLGDKPFVCEHCFSNFARLRRLKEH 106
G+ P+ C C F R +L H
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISH 29
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.2 bits (51), Expect = 8.6
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 72 KSHMRDHIQSHLGDKPFVCEH 92
SH+ H H G+KP
Sbjct: 25 NSHLVRHRGIHTGEKPSGPSS 45
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 23.1 bits (50), Expect = 8.6
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 5/28 (17%)
Query: 64 ICDY----KSYKK-SHMRDHIQSHLGDK 86
IC K Y K SH+R H++ H G++
Sbjct: 10 ICHIQGCGKVYGKTSHLRAHLRWHTGER 37
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.2 bits (51), Expect = 9.0
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 78 HIQSHLGDKPFVCEHCFSNFARLRRLKEH 106
S G+KP+ C+ C +F L H
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVH 31
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.2 bits (51), Expect = 9.0
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 78 HIQSHLGDKPFVCEHCFSNFARLRRLKEH 106
S G+KP+ C C F++ +L H
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLARH 31
Score = 22.9 bits (50), Expect = 9.4
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 72 KSHMRDHIQSHLGDKPFVCEH 92
S + H + H G+KP
Sbjct: 25 TSKLARHQRIHTGEKPSGPSS 45
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 22.9 bits (50), Expect = 9.4
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 78 HIQSHLGDKPFVCEHCFSNFARLRRLKEH 106
S G KP++C C F+ L H
Sbjct: 3 SGSSGTGVKPYMCNECGKAFSVYSSLTTH 31
>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 140
Score = 24.3 bits (53), Expect = 9.6
Identities = 9/19 (47%), Positives = 13/19 (68%), Gaps = 2/19 (10%)
Query: 17 IVFFYSSGVWCHHCEQFLP 35
++ FY+ WC HC+QF P
Sbjct: 38 LLEFYAP--WCGHCKQFAP 54
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 22.9 bits (50), Expect = 9.7
Identities = 8/29 (27%), Positives = 10/29 (34%)
Query: 78 HIQSHLGDKPFVCEHCFSNFARLRRLKEH 106
S G +P+ C C F L H
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICH 31
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 22.9 bits (50), Expect = 9.8
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 78 HIQSHLGDKPFVCEHCFSNFARLRRLKEH 106
S G+KP+ C C F + L H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANH 31
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.331 0.140 0.481
Gapped
Lambda K H
0.267 0.0478 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,838,860
Number of extensions: 94941
Number of successful extensions: 922
Number of sequences better than 10.0: 1
Number of HSP's gapped: 889
Number of HSP's successfully gapped: 416
Length of query: 115
Length of database: 6,701,793
Length adjustment: 78
Effective length of query: 37
Effective length of database: 4,523,955
Effective search space: 167386335
Effective search space used: 167386335
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 51 (24.0 bits)