RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13445
(115 letters)
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 35.3 bits (82), Expect = 8e-05
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 82 HLGDKPFVCEHCFSNFARLRRLKEHILRMHPE 113
H G+KP+ C C + F + +K HIL+ H E
Sbjct: 3 HSGEKPYECYICHARFTQSGTMKMHILQKHTE 34
Score = 22.2 bits (48), Expect = 5.3
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 60 YVCCICDYKSYKKSHMRDHIQSH 82
Y C IC + + M+ HI
Sbjct: 9 YECYICHARFTQSGTMKMHILQK 31
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 31.5 bits (72), Expect = 0.002
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 60 YVCCICDYKSYKKSHMRDHIQS-HLGDKPFVCE 91
Y+C C + H+ HI+ H ++P C+
Sbjct: 6 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ 38
Score = 28.4 bits (64), Expect = 0.026
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 85 DKPFVCEHCFSNFARLRRLKEHILRMH 111
KP++C+ C F+R L HI ++H
Sbjct: 3 GKPYICQSCGKGFSRPDHLNGHIKQVH 29
>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing
protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}
Length = 38
Score = 29.4 bits (66), Expect = 0.012
Identities = 7/34 (20%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 78 HIQSHLGDKPFVCEHCFSNFARLRRLKEHILRMH 111
+ + C+ C +F+ L +H R H
Sbjct: 3 SEWQQRERRRYKCDECGKSFSHSSDLSKH-RRTH 35
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 29.1 bits (66), Expect = 0.013
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 82 HLGDKPFVCEHCFSNFARLRRLKEHILRMH 111
H G+KP+ C C F+R L +H R+H
Sbjct: 2 HSGEKPYGCVECGKAFSRSSILVQH-QRVH 30
Score = 22.2 bits (48), Expect = 5.8
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 60 YVCCICDYKSYKKSHMRDHIQSHLG 84
Y C C + S + H + H G
Sbjct: 8 YGCVECGKAFSRSSILVQHQRVHTG 32
>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 28.9 bits (65), Expect = 0.019
Identities = 8/35 (22%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 59 NYVC--CICDYKSYKKSHMRDHIQSHLGDKPFVCE 91
++ C C K H+++H++ H + ++CE
Sbjct: 1 SFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICE 35
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 37
Score = 28.2 bits (63), Expect = 0.032
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 78 HIQSHLGDKPFVCEHCFSNFARLRRLKEHILRMH 111
+ G KPF C C +F+R L H + H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHR-KRH 34
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 27.7 bits (62), Expect = 0.048
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 82 HLGDKPFVCEHCFSNFARLRRLKEHILRMHPE 113
H G+KP+ C HC F + + L H R H
Sbjct: 3 HTGEKPYACSHCDKTFRQKQLLDMHFKRYHDP 34
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 35
Score = 27.4 bits (61), Expect = 0.061
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 82 HLGDKPFVCEHCFSNFARLRRLKEHILRMHPE 113
G +PFVC C S F H L++H +
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARH-LKVHTD 32
>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 47
Score = 26.4 bits (58), Expect = 0.18
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 52 HRPDKSYNYVCCICDYKSYKKSHMRDHIQSHLGDK 86
PDK++ + C ++ ++R HIQ+HL D+
Sbjct: 13 EMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
Score = 23.7 bits (51), Expect = 2.2
Identities = 9/43 (20%), Positives = 18/43 (41%), Gaps = 4/43 (9%)
Query: 71 KKSHMRDHIQSHLGDKPFVCEHCFSN--FARLRRLKEHILRMH 111
+ + +++ + DK F C F R ++ HI + H
Sbjct: 3 PRGSIDKYVK-EMPDKTFECLFPGCTKTFKRRYNIRSHI-QTH 43
>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 26.6 bits (58), Expect = 0.19
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 63 CICDYKSYKKSHMRDHIQSHLGDKPFVCEHCFSNFARLRRLKEHILRMH 111
C C KS H+ HLG +P+ C C F L H +++H
Sbjct: 6 CQCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGH-MKIH 53
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B
[TaxId: 5061]}
Length = 359
Score = 27.4 bits (60), Expect = 0.34
Identities = 11/62 (17%), Positives = 17/62 (27%), Gaps = 7/62 (11%)
Query: 17 IVFFYSSGVWCHHCEQFLPSSVDDLLLHSRKCASAHRPDKSYNYVCCICDYKSYKKSHMR 76
I S VW H ++ + +R SY+ I Y +
Sbjct: 156 ITVDDSDLVWIDHVT--TARIGRQHIVLGTS--ADNRVTISYSL---IDGRSDYSATCNG 208
Query: 77 DH 78
H
Sbjct: 209 HH 210
>d2hy5a1 c.114.1.1 (A:1-130) Sulfurtransferase DsrE {Chromatium
vinosum [TaxId: 1049]}
Length = 130
Score = 26.9 bits (59), Expect = 0.35
Identities = 11/48 (22%), Positives = 15/48 (31%), Gaps = 3/48 (6%)
Query: 18 VFFYSSGVWCHHCEQFLPSSVDDLLLHSRKCASAHRPDKSYNYVCCIC 65
VFFY GV P ++ + A + D VC
Sbjct: 37 VFFYHDGVNNSTRLTTPPQDDRHIVNRWAELAEQYELDM---VVCVAA 81
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 25.0 bits (55), Expect = 0.52
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 60 YVCCICDYKSYKKSHMRDHIQSHLGDK 86
+ C C + + H+ HI++H K
Sbjct: 3 FACPECPKRFMRSDHLSKHIKTHQNKK 29
Score = 23.8 bits (52), Expect = 1.1
Identities = 10/26 (38%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 86 KPFVCEHCFSNFARLRRLKEHILRMH 111
K F C C F R L +HI + H
Sbjct: 1 KKFACPECPKRFMRSDHLSKHI-KTH 25
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 29
Score = 24.9 bits (55), Expect = 0.56
Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 86 KPFVCEHCFSNFARLRRLKEHILRMH 111
+ FVCE C FAR LK H R H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHY-RSH 25
Score = 24.1 bits (53), Expect = 1.2
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 60 YVCCICDYKSYKKSHMRDHIQSHLGDK 86
+VC +C ++ H++ H +SH +K
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEK 29
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A
[TaxId: 5061]}
Length = 359
Score = 25.9 bits (56), Expect = 1.2
Identities = 10/68 (14%), Positives = 16/68 (23%), Gaps = 10/68 (14%)
Query: 17 IVFFYSSGVWCHHCEQFLPSSVDDLLLHSRKCASAHRPDKSYNY------VCCICDYKSY 70
I VW H + + +R + NY CD Y
Sbjct: 156 ITLDDCDLVWIDHVT--TARIGRQHYVLGTS--ADNRVSLTNNYIDGVSDYSATCDGYHY 211
Query: 71 KKSHMRDH 78
++
Sbjct: 212 WAIYLDGD 219
>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS)
{Thermus thermophilus [TaxId: 274]}
Length = 494
Score = 26.1 bits (56), Expect = 1.3
Identities = 8/95 (8%), Positives = 17/95 (17%)
Query: 17 IVFFYSSGVWCHHCEQFLPSSVDDLLLHSRKCASAHRPDKSYNYVCCICDYKSYKKSHMR 76
WC C+ L + R + + + I Y +
Sbjct: 149 AYRAKGLVNWCPKCQTVLANEQVVEGRCWRHEDTPVEKRELEQWYLRITAYAERLLKDLE 208
Query: 77 DHIQSHLGDKPFVCEHCFSNFARLRRLKEHILRMH 111
+ R + +
Sbjct: 209 GLNWPEKVKAMQRAWIGRLRDWLISRQRYWGTPIP 243
>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 29
Score = 23.8 bits (51), Expect = 1.5
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 60 YVCCICDYKSYKKSHMRDHIQSHLGD 85
+ C IC Y S S + H++SH GD
Sbjct: 4 FKCQICPYASRNSSQLTVHLRSHTGD 29
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 23.3 bits (51), Expect = 1.7
Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 86 KPFVCEHCFSNFARLRRLKEHILRMH 111
KPF C C NF+R L HI R H
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHI-RTH 26
>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 23.2 bits (50), Expect = 2.1
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 85 DKPFVCEHCFSNFARLRRLKEH 106
+KPF C+ C FAR K H
Sbjct: 1 EKPFACDICGRKFARSDERKRH 22
>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE
{Salmonella typhimurium [TaxId: 90371]}
Length = 119
Score = 24.6 bits (53), Expect = 2.3
Identities = 1/20 (5%), Positives = 3/20 (15%)
Query: 16 KIVFFYSSGVWCHHCEQFLP 35
++ S
Sbjct: 31 GVILLSSDPRRTPEVSDNPV 50
>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like
protein {Archaeon Methanobacterium thermoautotrophicum
[TaxId: 145262]}
Length = 85
Score = 23.9 bits (51), Expect = 2.9
Identities = 5/20 (25%), Positives = 7/20 (35%), Gaps = 2/20 (10%)
Query: 16 KIVFFYSSGVWCHHCEQFLP 35
I F S C +C +
Sbjct: 4 NIEVFTSP--TCPYCPMAIE 21
>d1fy7a_ d.108.1.1 (A:) Histone acetyltransferase ESA1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 273
Score = 24.4 bits (53), Expect = 4.2
Identities = 2/25 (8%), Positives = 10/25 (40%)
Query: 85 DKPFVCEHCFSNFARLRRLKEHILR 109
D ++ + F ++ + + +
Sbjct: 32 DFIYIDDFTLQYFGSKKQYERYRKK 56
>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like
protein {Archaeon Methanococcus jannaschii [TaxId:
2190]}
Length = 85
Score = 23.7 bits (50), Expect = 4.5
Identities = 7/55 (12%), Positives = 10/55 (18%), Gaps = 2/55 (3%)
Query: 16 KIVFFYSSGVWCHHCEQFLPSSVDDLLLHSRKCASAHRPDKSYNYVCCICDYKSY 70
KI F S C HC + + +
Sbjct: 5 KIELFTSP--MCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQKAMEYGIMAV 57
>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 166
Score = 24.2 bits (51), Expect = 4.7
Identities = 4/22 (18%), Positives = 8/22 (36%)
Query: 14 YSKIVFFYSSGVWCHHCEQFLP 35
+ + +WC C+ L
Sbjct: 53 ERRYRLLVAGEMWCPDCQINLA 74
>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 28
Score = 22.1 bits (47), Expect = 4.9
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 60 YVCCICDYKSYKKSHMRDHIQSHLGDK 86
Y+C C ++ K S ++ HI++H +
Sbjct: 2 YICEECGIRAKKPSMLKKHIRTHTDVR 28
>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE
{Escherichia coli [TaxId: 562]}
Length = 132
Score = 23.9 bits (51), Expect = 5.0
Identities = 2/20 (10%), Positives = 3/20 (15%)
Query: 16 KIVFFYSSGVWCHHCEQFLP 35
+V S
Sbjct: 37 GVVLLSSDPKRTPEVSDNPV 56
>d2giva1 d.108.1.1 (A:4-274) Probable histone acetyltransferase
MYST1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 271
Score = 24.0 bits (52), Expect = 5.6
Identities = 5/25 (20%), Positives = 12/25 (48%)
Query: 85 DKPFVCEHCFSNFARLRRLKEHILR 109
K ++CE+C + + H+ +
Sbjct: 29 PKLWLCEYCLKYMKYEKSYRFHLGQ 53
>d2ozua1 d.108.1.1 (A:507-776) Histone acetyltransferase MYST3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 270
Score = 24.0 bits (52), Expect = 6.0
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 85 DKPFVCEHCFSNFARLRRLKEHILR 109
K ++CE C L++H+ +
Sbjct: 29 PKLYLCEFCLKYMKSRTILQQHMKK 53
>d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase
{Escherichia coli [TaxId: 562]}
Length = 183
Score = 23.6 bits (50), Expect = 6.4
Identities = 7/109 (6%), Positives = 26/109 (23%), Gaps = 3/109 (2%)
Query: 1 MVMSSYGMNFRICYSKIVF---FYSSGVWCHHCEQFLPSSVDDLLLHSRKCASAHRPDKS 57
+ G++ R+ + + + + ++ + + + A D
Sbjct: 24 EAAALTGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADFIYTDVW 83
Query: 58 YNYVCCICDYKSYKKSHMRDHIQSHLGDKPFVCEHCFSNFARLRRLKEH 106
+ + + S + E F + +
Sbjct: 84 VSMGEAKEKWAERIALLREYQVNSKMMQLTGNPEVKFLHCLPAFHDDQT 132
>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 21.6 bits (45), Expect = 8.6
Identities = 7/22 (31%), Positives = 15/22 (68%)
Query: 60 YVCCICDYKSYKKSHMRDHIQS 81
Y C C+++S S+++ HI++
Sbjct: 3 YQCQYCEFRSADSSNLKTHIKT 24
>d1hara_ e.8.1.2 (A:) HIV-1 reverse transcriptase {Human
immunodeficiency virus type 1 [TaxId: 11676]}
Length = 216
Score = 23.4 bits (50), Expect = 9.1
Identities = 8/53 (15%), Positives = 17/53 (32%)
Query: 1 MVMSSYGMNFRICYSKIVFFYSSGVWCHHCEQFLPSSVDDLLLHSRKCASAHR 53
V+ + + + + + + +DDL + S AHR
Sbjct: 147 NVLPQGWKGSPAIFQSSMTKILAPFKAANPDIVIYQYMDDLYVGSDLAIGAHR 199
>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing
protein C330018D20Rik {Mouse (Mus musculus) [TaxId:
10090]}
Length = 100
Score = 22.8 bits (48), Expect = 9.3
Identities = 7/52 (13%), Positives = 12/52 (23%), Gaps = 5/52 (9%)
Query: 16 KIVFFYSSGVWCHHCEQFLPSS---VDDLLLHSRKCASAHRPDKSYNYVCCI 64
+ F + C C++ D +L Y I
Sbjct: 18 VLTLFTKA--PCPLCDEAKEVLQPYKDRFILQEVDITLPENSTWYERYKFDI 67
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.331 0.140 0.481
Gapped
Lambda K H
0.267 0.0611 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 485,255
Number of extensions: 21368
Number of successful extensions: 211
Number of sequences better than 10.0: 1
Number of HSP's gapped: 206
Number of HSP's successfully gapped: 102
Length of query: 115
Length of database: 2,407,596
Length adjustment: 73
Effective length of query: 42
Effective length of database: 1,405,306
Effective search space: 59022852
Effective search space used: 59022852
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 47 (22.1 bits)