BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13446
(121 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5R1P0|NMDZ1_CANFA Glutamate receptor ionotropic, NMDA 1 OS=Canis familiaris GN=GRIN1
PE=2 SV=2
Length = 943
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 41/84 (48%), Gaps = 8/84 (9%)
Query: 25 ISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFYRYLRNVS-VEGDT 83
IS A+ V A V + + N++ + C G + WKTG F R L + +G T
Sbjct: 302 ISDAVGVVAQAVHELLEKE---NIT-DPPRGCVG-NTNIWKTGPLFKRVLMSSKYADGVT 356
Query: 84 GKPNVEFTADGVLKAAELKIMNLR 107
G+ VEF DG K A IMNL+
Sbjct: 357 GR--VEFNEDGDRKFANYSIMNLQ 378
>sp|P35438|NMDZ1_MOUSE Glutamate receptor ionotropic, NMDA 1 OS=Mus musculus GN=Grin1 PE=1
SV=1
Length = 938
Score = 32.7 bits (73), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 41/84 (48%), Gaps = 8/84 (9%)
Query: 25 ISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFYRYLRNVS-VEGDT 83
IS A+ V A V + + N++ + C G + WKTG F R L + +G T
Sbjct: 281 ISDAVGVVAQAVHELLEKE---NIT-DPPRGCVG-NTNIWKTGPLFKRVLMSSKYADGVT 335
Query: 84 GKPNVEFTADGVLKAAELKIMNLR 107
G+ VEF DG K A IMNL+
Sbjct: 336 GR--VEFNEDGDRKFANYSIMNLQ 357
>sp|Q05586|NMDZ1_HUMAN Glutamate receptor ionotropic, NMDA 1 OS=Homo sapiens GN=GRIN1 PE=1
SV=1
Length = 938
Score = 32.7 bits (73), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 41/84 (48%), Gaps = 8/84 (9%)
Query: 25 ISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFYRYLRNVS-VEGDT 83
IS A+ V A V + + N++ + C G + WKTG F R L + +G T
Sbjct: 281 ISDAVGVVAQAVHELLEKE---NIT-DPPRGCVG-NTNIWKTGPLFKRVLMSSKYADGVT 335
Query: 84 GKPNVEFTADGVLKAAELKIMNLR 107
G+ VEF DG K A IMNL+
Sbjct: 336 GR--VEFNEDGDRKFANYSIMNLQ 357
>sp|Q2JA12|CH603_FRASC 60 kDa chaperonin 3 OS=Frankia sp. (strain CcI3) GN=groL3 PE=3 SV=1
Length = 549
Score = 32.7 bits (73), Expect = 0.66, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 75 RNVSVEGDTGKPNVEFTADGVLKAAELKIMNLRPNLGSQLKWEEST 120
RN +E TG P + T DGV A E+++ N N+G+QL E +T
Sbjct: 35 RNAVIEKLTGPPTI--TNDGVTIAREIQLRNPFANMGAQLVKEVAT 78
>sp|P35439|NMDZ1_RAT Glutamate receptor ionotropic, NMDA 1 OS=Rattus norvegicus GN=Grin1
PE=1 SV=1
Length = 938
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 41/84 (48%), Gaps = 8/84 (9%)
Query: 25 ISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFYRYLRNVS-VEGDT 83
IS A+ V A V + + N++ + C G + WKTG F R L + +G T
Sbjct: 281 ISDAVGVVAQAVHELLEKE---NIT-DPPRGCVG-NTNIWKTGPLFKRVLMSSKYADGVT 335
Query: 84 GKPNVEFTADGVLKAAELKIMNLR 107
G+ VEF DG K A IMNL+
Sbjct: 336 GR--VEFNEDGDRKFANYSIMNLQ 357
>sp|B4MU83|NMDA1_DROWI Glutamate [NMDA] receptor subunit 1 OS=Drosophila willistoni
GN=Nmdar1 PE=3 SV=1
Length = 982
Score = 32.3 bits (72), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 64 WKTGDRFYRYLRNVSVEGDTGKPNVEFTADGVLKAAELKIMNLRPN 109
W++G R ++YL+ ++ G+TG+ V F +G A ++N+R N
Sbjct: 320 WESGKRLFQYLKTRNITGETGQ--VAFDDNGDRIYAGYDVINIREN 363
>sp|Q26473|SEM1A_SCHAM Semaphorin-1A OS=Schistocerca americana GN=SEMA-1A PE=1 SV=1
Length = 730
Score = 32.3 bits (72), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Query: 51 NTQLSCDGVGESRWKTGDRFYRYLRNVSV---EGDTGKPNVEFTADGV 95
N +L C VG W G R R+++N+S+ + G+P E A V
Sbjct: 516 NVELKCTAVGSPDWSAGKR--RFIQNISLGEHKACGGRPQTEIVASPV 561
>sp|Q8BMF5|GRIK4_MOUSE Glutamate receptor ionotropic, kainate 4 OS=Mus musculus GN=Grik4
PE=2 SV=2
Length = 956
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 64 WKTGDRFYRYLRNVSVEGDTGKPNVEFTADGVLKAAELKIMNLRPNLGSQL-KW 116
W+ G YLR V +EG TG ++EF + G LKI+ N Q+ +W
Sbjct: 341 WQHGTSLMNYLRMVELEGLTG--HIEFNSKGQRSNYALKILQFTRNGFQQIGQW 392
>sp|A9GBQ2|CH602_SORC5 60 kDa chaperonin 2 OS=Sorangium cellulosum (strain So ce56)
GN=groL2 PE=3 SV=1
Length = 542
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 75 RNVSVEGDTGKPNVEFTADGVLKAAELKIMNLRPNLGSQLKWE 117
RNV +E G P V T DGV A E+++ N N+G+Q+ E
Sbjct: 36 RNVVIEKSFGSPTV--TKDGVTVAKEIELENRFENMGAQMVRE 76
>sp|Q2S0Q3|CH602_SALRD 60 kDa chaperonin 2 OS=Salinibacter ruber (strain DSM 13855 / M31)
GN=groL2 PE=3 SV=1
Length = 560
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 75 RNVSVEGDTGKPNVEFTADGVLKAAELKIMNLRPNLGSQLKWEEST 120
RNV +E G P + T DGV A E+++ PN+G+Q+ E ++
Sbjct: 35 RNVVLEKSFGAPTI--TKDGVTVAKEIELEERLPNIGAQVLKEAAS 78
>sp|Q2S5Z8|CH601_SALRD 60 kDa chaperonin 1 OS=Salinibacter ruber (strain DSM 13855 / M31)
GN=groL1 PE=3 SV=1
Length = 570
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 75 RNVSVEGDTGKPNVEFTADGVLKAAELKIMNLRPNLGSQLKWEEST 120
RNV +E G P + T DGV A E+++ PN+G+Q+ E ++
Sbjct: 48 RNVVLEKSFGAPTI--TKDGVTVAKEIELEERLPNIGAQVLKEAAS 91
>sp|A8M497|CH602_SALAI 60 kDa chaperonin 2 OS=Salinispora arenicola (strain CNS-205)
GN=groL2 PE=3 SV=1
Length = 545
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 75 RNVSVEGDTGKPNVEFTADGVLKAAELKIMNLRPNLGSQLKWEEST 120
RNV ++ G P + T DGV A E+++ N NLG+QL E +T
Sbjct: 35 RNVVLDKKFGAPTI--TNDGVTIAKEIELTNPYENLGAQLVKEVAT 78
>sp|A9WJN7|CH601_CHLAA 60 kDa chaperonin 1 OS=Chloroflexus aurantiacus (strain ATCC 29366
/ DSM 635 / J-10-fl) GN=groL1 PE=3 SV=1
Length = 544
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 75 RNVSVEGDTGKPNVEFTADGVLKAAELKIMNLRPNLGSQLKWEEST 120
RNV+++ G P V T DGV A E+++ + N+G+QL E +T
Sbjct: 35 RNVAIDKKFGSPTV--THDGVTVAKEIELKDPFENMGAQLLKEAAT 78
>sp|B5YJN3|CH60_THEYD 60 kDa chaperonin OS=Thermodesulfovibrio yellowstonii (strain ATCC
51303 / DSM 11347 / YP87) GN=groL PE=3 SV=1
Length = 540
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 75 RNVSVEGDTGKPNVEFTADGVLKAAELKIMNLRPNLGSQLKWEEST 120
RNV +E G PNV T DGV A E+ + N+G+QL E ++
Sbjct: 36 RNVVIERKFGSPNV--TKDGVTVAKEIDLKEPFENMGAQLVREVAS 79
>sp|Q16099|GRIK4_HUMAN Glutamate receptor ionotropic, kainate 4 OS=Homo sapiens GN=GRIK4
PE=2 SV=2
Length = 956
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 64 WKTGDRFYRYLRNVSVEGDTGKPNVEFTADGVLKAAELKIMNLRPNLGSQL-KWE 117
W+ G YLR V +EG TG ++EF + G LKI+ N Q+ +W
Sbjct: 341 WQHGTSLMNYLRMVELEGLTG--HIEFNSKGQRSNYALKILQFTRNGFRQIGQWH 393
>sp|Q5IS46|GRIK4_PANTR Glutamate receptor ionotropic, kainate 4 OS=Pan troglodytes
GN=GRIK4 PE=2 SV=1
Length = 956
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 64 WKTGDRFYRYLRNVSVEGDTGKPNVEFTADGVLKAAELKIMNLRPNLGSQL-KWE 117
W+ G YLR V +EG TG ++EF + G LKI+ N Q+ +W
Sbjct: 341 WQHGTSLMNYLRMVELEGLTG--HIEFNSKGQRSNYALKILQFTRNGFRQIGQWH 393
>sp|A7HAD3|CH601_ANADF 60 kDa chaperonin 1 OS=Anaeromyxobacter sp. (strain Fw109-5)
GN=groL1 PE=3 SV=1
Length = 547
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 75 RNVSVEGDTGKPNVEFTADGVLKAAELKIMNLRPNLGSQL 114
RNV +E G P + T DGV A E+++ N N+G+Q+
Sbjct: 36 RNVVIEKSFGSPTI--TKDGVTVAKEIEVENKFENMGAQM 73
>sp|B4LZB5|NMDA1_DROVI Glutamate [NMDA] receptor subunit 1 OS=Drosophila virilis GN=Nmdar1
PE=3 SV=1
Length = 984
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 64 WKTGDRFYRYLRNVSVEGDTGKPNVEFTADGVLKAAELKIMNLRPNLGSQL 114
W++G R ++YL++ ++ G+TG+ V F +G A ++N+R + L
Sbjct: 328 WESGKRLFQYLKSRNITGETGQ--VAFDDNGDRIYAGYDVINIREHQKQHL 376
>sp|Q296F7|NMDA1_DROPS Glutamate [NMDA] receptor subunit 1 OS=Drosophila pseudoobscura
pseudoobscura GN=Nmdar1 PE=3 SV=1
Length = 1004
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 64 WKTGDRFYRYLRNVSVEGDTGKPNVEFTADGVLKAAELKIMNLR 107
W++G R ++YL++ ++ G+TG+ V F +G A ++N+R
Sbjct: 343 WESGKRLFQYLKSRNITGETGQ--VAFDDNGDRIYAGYDVINIR 384
>sp|Q24418|NMDA1_DROME Glutamate [NMDA] receptor subunit 1 OS=Drosophila melanogaster
GN=Nmdar1 PE=1 SV=1
Length = 997
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 64 WKTGDRFYRYLRNVSVEGDTGKPNVEFTADGVLKAAELKIMNLR 107
W++G R ++YL++ ++ G+TG+ V F +G A ++N+R
Sbjct: 331 WESGKRLFQYLKSRNITGETGQ--VAFDDNGDRIYAGYDVINIR 372
>sp|B4GF83|NMDA1_DROPE Glutamate [NMDA] receptor subunit 1 OS=Drosophila persimilis
GN=Nmdar1 PE=3 SV=1
Length = 1004
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 64 WKTGDRFYRYLRNVSVEGDTGKPNVEFTADGVLKAAELKIMNLR 107
W++G R ++YL++ ++ G+TG+ V F +G A ++N+R
Sbjct: 343 WESGKRLFQYLKSRNITGETGQ--VAFDDNGDRIYAGYDVINIR 384
>sp|B4JHV0|NMDA1_DROGR Glutamate [NMDA] receptor subunit 1 OS=Drosophila grimshawi
GN=Nmdar1 PE=3 SV=1
Length = 982
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 64 WKTGDRFYRYLRNVSVEGDTGKPNVEFTADGVLKAAELKIMNLR 107
W++G R ++YL++ ++ G+TG+ V F +G A ++N+R
Sbjct: 326 WESGKRLFQYLKSRNITGETGQ--VAFDDNGDRIYAGYDVINIR 367
>sp|Q01812|GRIK4_RAT Glutamate receptor ionotropic, kainate 4 OS=Rattus norvegicus
GN=Grik4 PE=2 SV=1
Length = 956
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 64 WKTGDRFYRYLRNVSVEGDTGKPNVEFTADGVLKAAELKIMNLRPNLGSQL-KWE 117
W+ G YLR V +EG TG ++EF + G LKI+ N Q+ +W
Sbjct: 341 WQHGTSLMNYLRMVELEGLTG--HIEFNSKGQRSNYALKILQFTRNGFRQIGQWH 393
>sp|B4QWW7|NMDA1_DROSI Glutamate [NMDA] receptor subunit 1 OS=Drosophila simulans
GN=Nmdar1 PE=3 SV=1
Length = 997
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 64 WKTGDRFYRYLRNVSVEGDTGKPNVEFTADGVLKAAELKIMNLR 107
W++G R ++YL++ ++ G+TG+ V F +G A ++N+R
Sbjct: 331 WESGKRLFQYLKSRNITGETGQ--VAFDDNGDRIYAGYDVINIR 372
>sp|B4I414|NMDA1_DROSE Glutamate [NMDA] receptor subunit 1 OS=Drosophila sechellia
GN=Nmdar1 PE=3 SV=1
Length = 997
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 64 WKTGDRFYRYLRNVSVEGDTGKPNVEFTADGVLKAAELKIMNLR 107
W++G R ++YL++ ++ G+TG+ V F +G A ++N+R
Sbjct: 331 WESGKRLFQYLKSRNITGETGQ--VAFDDNGDRIYAGYDVINIR 372
>sp|B3LZ39|NMDA1_DROAN Glutamate [NMDA] receptor subunit 1 OS=Drosophila ananassae
GN=Nmdar1 PE=3 SV=1
Length = 994
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 64 WKTGDRFYRYLRNVSVEGDTGKPNVEFTADGVLKAAELKIMNLR 107
W++G R ++YL++ ++ G+TG+ V F +G A ++N+R
Sbjct: 328 WESGKRLFQYLKSRNITGETGQ--VAFDDNGDRIYAGYDVINIR 369
>sp|B4KD90|NMDA1_DROMO Glutamate [NMDA] receptor subunit 1 OS=Drosophila mojavensis
GN=Nmdar1 PE=3 SV=1
Length = 980
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 64 WKTGDRFYRYLRNVSVEGDTGKPNVEFTADGVLKAAELKIMNLR 107
W++G R ++YL++ ++ G+TG+ V F +G A ++N+R
Sbjct: 328 WESGKRLFQYLKSRNITGETGQ--VAFDDNGDRIYAGYDVINIR 369
>sp|B3P2E5|NMDA1_DROER Glutamate [NMDA] receptor subunit 1 OS=Drosophila erecta GN=Nmdar1
PE=3 SV=1
Length = 997
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 64 WKTGDRFYRYLRNVSVEGDTGKPNVEFTADGVLKAAELKIMNLR 107
W++G R ++YL++ ++ G+TG+ V F +G A ++N+R
Sbjct: 331 WESGKRLFQYLKSRNITGETGQ--VAFDDNGDRIYAGYDVINIR 372
>sp|B4PVB0|NMDA1_DROYA Glutamate [NMDA] receptor subunit 1 OS=Drosophila yakuba GN=Nmdar1
PE=3 SV=1
Length = 997
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 64 WKTGDRFYRYLRNVSVEGDTGKPNVEFTADGVLKAAELKIMNLR 107
W++G R ++YL++ ++ G+TG+ V F +G A ++N+R
Sbjct: 331 WESGKRLFQYLKSRNITGETGQ--VAFDDNGDRIYAGYDVINIR 372
>sp|A7HGP8|CH602_ANADF 60 kDa chaperonin 2 OS=Anaeromyxobacter sp. (strain Fw109-5)
GN=groL2 PE=3 SV=1
Length = 547
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 75 RNVSVEGDTGKPNVEFTADGVLKAAELKIMNLRPNLGSQLKWE 117
RNV +E G P + T DGV A E+++ N N+G+Q+ E
Sbjct: 36 RNVVIEKSFGSPTI--TKDGVTVAKEIELENKFENMGAQMVKE 76
>sp|Q2IFK0|CH602_ANADE 60 kDa chaperonin 2 OS=Anaeromyxobacter dehalogenans (strain 2CP-C)
GN=groL2 PE=3 SV=1
Length = 547
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 75 RNVSVEGDTGKPNVEFTADGVLKAAELKIMNLRPNLGSQLKWE 117
RNV +E G P + T DGV A E+++ N N+G+Q+ E
Sbjct: 36 RNVVIEKSFGSPTI--TKDGVTVAKEIELENKFENMGAQMVKE 76
>sp|Q1D2S1|CH602_MYXXD 60 kDa chaperonin 2 OS=Myxococcus xanthus (strain DK 1622) GN=groL2
PE=3 SV=1
Length = 549
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 75 RNVSVEGDTGKPNVEFTADGVLKAAELKIMNLRPNLGSQL 114
RNV +E G P + T DGV A E+++ N N+G+Q+
Sbjct: 35 RNVVIEKSFGSPTI--TKDGVTVAKEIELENKFENMGAQM 72
>sp|B8ER20|CH60_METSB 60 kDa chaperonin OS=Methylocella silvestris (strain BL2 / DSM
15510 / NCIMB 13906) GN=groL PE=3 SV=1
Length = 547
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 75 RNVSVEGDTGKPNVEFTADGVLKAAELKIMNLRPNLGSQLKWE 117
RNV +E G P + T DGV A E+++ + NLG+QL E
Sbjct: 36 RNVVIEKSFGAPRI--TKDGVTVAKEIELSDKFENLGAQLIRE 76
>sp|A4XBH2|CH602_SALTO 60 kDa chaperonin 2 OS=Salinispora tropica (strain ATCC BAA-916 /
DSM 44818 / CNB-440) GN=groL2 PE=3 SV=1
Length = 543
Score = 30.4 bits (67), Expect = 3.4, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 75 RNVSVEGDTGKPNVEFTADGVLKAAELKIMNLRPNLGSQLKWEEST 120
RNV ++ G P + T DGV A E+++ + NLG+QL E +T
Sbjct: 35 RNVVLDKKFGAPTI--TNDGVTIAKEIELTDPHENLGAQLVKEVAT 78
>sp|B2ICU4|CH60_BEII9 60 kDa chaperonin OS=Beijerinckia indica subsp. indica (strain ATCC
9039 / DSM 1715 / NCIB 8712) GN=groL PE=3 SV=1
Length = 548
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 75 RNVSVEGDTGKPNVEFTADGVLKAAELKIMNLRPNLGSQLKWE 117
RNV +E G P + T DGV A E+++ + NLG+QL E
Sbjct: 36 RNVVIEKSFGAPRI--TKDGVSVAKEIELADKFENLGAQLVRE 76
>sp|A5EET6|CH602_BRASB 60 kDa chaperonin 2 OS=Bradyrhizobium sp. (strain BTAi1 / ATCC
BAA-1182) GN=groL2 PE=3 SV=1
Length = 541
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 75 RNVSVEGDTGKPNVEFTADGVLKAAELKIMNLRPNLGSQL 114
RNV +E G P + T DGV A E+++ + NLG+QL
Sbjct: 36 RNVLIEKSFGAPRI--TKDGVTVAKEIELEDKYENLGAQL 73
>sp|Q052X9|CH60_LEPBL 60 kDa chaperonin OS=Leptospira borgpetersenii serovar Hardjo-bovis
(strain L550) GN=groL PE=3 SV=1
Length = 546
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 75 RNVSVEGDTGKPNVEFTADGVLKAAELKIMNLRPNLGSQLKWEEST 120
RNV ++ G P + T DGV A E+++ + N+G+Q+ E ST
Sbjct: 35 RNVVIDKKFGAPTI--TKDGVTVAKEIELEDALENMGAQMVKEVST 78
>sp|Q04S01|CH60_LEPBJ 60 kDa chaperonin OS=Leptospira borgpetersenii serovar Hardjo-bovis
(strain JB197) GN=groL PE=3 SV=1
Length = 546
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 75 RNVSVEGDTGKPNVEFTADGVLKAAELKIMNLRPNLGSQLKWEEST 120
RNV ++ G P + T DGV A E+++ + N+G+Q+ E ST
Sbjct: 35 RNVVIDKKFGAPTI--TKDGVTVAKEIELEDALENMGAQMVKEVST 78
>sp|A5V0S2|CH602_ROSS1 60 kDa chaperonin 2 OS=Roseiflexus sp. (strain RS-1) GN=groL2 PE=3
SV=1
Length = 544
Score = 30.4 bits (67), Expect = 3.8, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 75 RNVSVEGDTGKPNVEFTADGVLKAAELKIMNLRPNLGSQLKWEEST 120
RNVS++ G P V T DGV A E+++ + N+G++L E +T
Sbjct: 35 RNVSIDKKFGAPTV--THDGVTVAKEIELKDPFENMGARLLVEVAT 78
>sp|Q1D3Y5|CH601_MYXXD 60 kDa chaperonin 1 OS=Myxococcus xanthus (strain DK 1622) GN=groL1
PE=3 SV=1
Length = 547
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 75 RNVSVEGDTGKPNVEFTADGVLKAAELKIMNLRPNLGSQLKWE 117
RNV +E G P + T DGV A E+ + N N+G+Q+ E
Sbjct: 36 RNVVIEKSFGSPTI--TKDGVTVAKEIDLENKFENMGAQMVKE 76
>sp|Q73NH7|CH60_TREDE 60 kDa chaperonin OS=Treponema denticola (strain ATCC 35405 / CIP
103919 / DSM 14222) GN=groL PE=3 SV=1
Length = 544
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 75 RNVSVEGDTGKPNVEFTADGVLKAAELKIMNLRPNLGSQLKWEEST 120
RNV ++ G P V T DGV A E+++ N N+G+QL E +T
Sbjct: 35 RNVLIDKSFGAPTV--TKDGVSVAREVELENKFENMGAQLLKEVAT 78
>sp|A7NIK8|CH601_ROSCS 60 kDa chaperonin 1 OS=Roseiflexus castenholzii (strain DSM 13941 /
HLO8) GN=groL1 PE=3 SV=1
Length = 543
Score = 30.0 bits (66), Expect = 3.9, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 75 RNVSVEGDTGKPNVEFTADGVLKAAELKIMNLRPNLGSQLKWEEST 120
RNVS++ G P V T DGV A E+++ + N+G++L E +T
Sbjct: 35 RNVSIDKKFGAPTV--THDGVTVAKEIELKDPFENMGARLLVEVAT 78
>sp|B0SKU2|CH60_LEPBP 60 kDa chaperonin OS=Leptospira biflexa serovar Patoc (strain Patoc
1 / ATCC 23582 / Paris) GN=groL PE=3 SV=1
Length = 549
Score = 30.0 bits (66), Expect = 4.3, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 75 RNVSVEGDTGKPNVEFTADGVLKAAELKIMNLRPNLGSQLKWEEST 120
RNV ++ G P + T DGV A E+++ + N+G+Q+ E ST
Sbjct: 35 RNVVIDKKFGSPTI--TKDGVTVAKEIELEDAIENMGAQMVKEVST 78
>sp|B0SCC0|CH60_LEPBA 60 kDa chaperonin OS=Leptospira biflexa serovar Patoc (strain Patoc
1 / Ames) GN=groL PE=3 SV=1
Length = 549
Score = 30.0 bits (66), Expect = 4.3, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 75 RNVSVEGDTGKPNVEFTADGVLKAAELKIMNLRPNLGSQLKWEEST 120
RNV ++ G P + T DGV A E+++ + N+G+Q+ E ST
Sbjct: 35 RNVVIDKKFGSPTI--TKDGVTVAKEIELEDAIENMGAQMVKEVST 78
>sp|A1R074|CH60_BORT9 60 kDa chaperonin OS=Borrelia turicatae (strain 91E135) GN=groL
PE=3 SV=1
Length = 544
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 75 RNVSVEGDTGKPNVEFTADGVLKAAELKIMNLRPNLGSQLKWE 117
RNV ++ G P V T DGV A E+++ N N+G+QL E
Sbjct: 35 RNVLIDKKFGSPTV--TKDGVSVAREIELDNALENMGAQLLKE 75
>sp|A6Q2B4|CH60_NITSB 60 kDa chaperonin OS=Nitratiruptor sp. (strain SB155-2) GN=groL
PE=3 SV=1
Length = 547
Score = 30.0 bits (66), Expect = 4.4, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 75 RNVSVEGDTGKPNVEFTADGVLKAAELKIMNLRPNLGSQL 114
RNV ++ G P++ T DGV A E+++ N N+G+QL
Sbjct: 36 RNVLIQKSFGSPSI--TKDGVSVAKEIELPNTVENMGAQL 73
>sp|Q00960|NMDE2_RAT Glutamate receptor ionotropic, NMDA 2B OS=Rattus norvegicus
GN=Grin2b PE=1 SV=1
Length = 1482
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 41/106 (38%), Gaps = 11/106 (10%)
Query: 12 VHFDTSSASLVQGISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFY 71
V +D L + I + D +S+ S + SC E R +
Sbjct: 280 VSYDEWDYGLPARVRDGIAIITTAASDMLSEHS---FIPEPKSSCYNTHEKRIYQSNMLN 336
Query: 72 RYLRNVSVEGDTGKPNVEFTADGVLKAAELKIMNLRPNLGSQLKWE 117
RYL NV+ EG N+ F+ DG +L I+ L + KWE
Sbjct: 337 RYLINVTFEGR----NLSFSEDGYQMHPKLVII----LLNKERKWE 374
>sp|A8I5R5|CH602_AZOC5 60 kDa chaperonin 2 OS=Azorhizobium caulinodans (strain ATCC 43989
/ DSM 5975 / ORS 571) GN=groL2 PE=3 SV=1
Length = 542
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 75 RNVSVEGDTGKPNVEFTADGVLKAAELKIMNLRPNLGSQLKWE 117
RNV +E G P + T DGV A E+++ + NLG+QL E
Sbjct: 36 RNVVIEKSFGAPRI--TKDGVSVAKEIELEDKFENLGAQLVRE 76
>sp|Q5R1P3|NMDE2_CANFA Glutamate receptor ionotropic, NMDA 2B OS=Canis familiaris
GN=GRIN2B PE=2 SV=1
Length = 1485
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 41/106 (38%), Gaps = 11/106 (10%)
Query: 12 VHFDTSSASLVQGISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFY 71
V +D L + I + D +S+ S + SC E R +
Sbjct: 280 VSYDEWDYGLPARVRDGIAIITTAASDMLSEHS---FIPEPKSSCYNTHEKRIYQSNMLN 336
Query: 72 RYLRNVSVEGDTGKPNVEFTADGVLKAAELKIMNLRPNLGSQLKWE 117
RYL NV+ EG N+ F+ DG +L I+ L + KWE
Sbjct: 337 RYLINVTFEGR----NLSFSEDGYQMHPKLVII----LLNKERKWE 374
>sp|Q13224|NMDE2_HUMAN Glutamate receptor ionotropic, NMDA 2B OS=Homo sapiens GN=GRIN2B
PE=1 SV=3
Length = 1484
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 41/106 (38%), Gaps = 11/106 (10%)
Query: 12 VHFDTSSASLVQGISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFY 71
V +D L + I + D +S+ S + SC E R +
Sbjct: 280 VSYDEWDYGLPARVRDGIAIITTAASDMLSEHS---FIPEPKSSCYNTHEKRIYQSNMLN 336
Query: 72 RYLRNVSVEGDTGKPNVEFTADGVLKAAELKIMNLRPNLGSQLKWE 117
RYL NV+ EG N+ F+ DG +L I+ L + KWE
Sbjct: 337 RYLINVTFEGR----NLSFSEDGYQMHPKLVII----LLNKERKWE 374
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.129 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,570,031
Number of Sequences: 539616
Number of extensions: 1586713
Number of successful extensions: 3541
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 236
Number of HSP's that attempted gapping in prelim test: 3468
Number of HSP's gapped (non-prelim): 244
length of query: 121
length of database: 191,569,459
effective HSP length: 88
effective length of query: 33
effective length of database: 144,083,251
effective search space: 4754747283
effective search space used: 4754747283
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)